BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1286 (PAB1286) DE:Hypothetical protein
         (103 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75010 hypothetical protein PAB1286 - Pyrococcus abyssi (st...   213  3e-55
pir||G71141 hypothetical protein PH0346 - Pyrococcus horikoshii ...   188  2e-47

>pir||F75010 hypothetical protein PAB1286 - Pyrococcus abyssi (strain Orsay)
           >gi|5459038|emb|CAB50524.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 103
           
 Score =  213 bits (538), Expect = 3e-55
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MRRVKLGHHYYYIVTPEDLKNGKYKGKNVVLEGEIKEKPLIEFLPMELPSYRTTFEIFGF 60
           MRRVKLGHHYYYIVTPEDLKNGKYKGKNVVLEGEIKEKPLIEFLPMELPSYRTTFEIFGF
Sbjct: 1   MRRVKLGHHYYYIVTPEDLKNGKYKGKNVVLEGEIKEKPLIEFLPMELPSYRTTFEIFGF 60

Query: 61  KVEFSGTPYIKLGDKVKVYGVFVGDGIIARAIETEGAIYLTEE 103
           KVEFSGTPYIKLGDKVKVYGVFVGDGIIARAIETEGAIYLTEE
Sbjct: 61  KVEFSGTPYIKLGDKVKVYGVFVGDGIIARAIETEGAIYLTEE 103


>pir||G71141 hypothetical protein PH0346 - Pyrococcus horikoshii
           >gi|3256737|dbj|BAA29420.1| (AP000002) 103aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 103
           
 Score =  188 bits (472), Expect = 2e-47
 Identities = 85/103 (82%), Positives = 98/103 (94%)

Query: 1   MRRVKLGHHYYYIVTPEDLKNGKYKGKNVVLEGEIKEKPLIEFLPMELPSYRTTFEIFGF 60
           M RVKLGHHYYYIVTP+DL++GKYKGKN+V+EGEIK+KP+IEFLPMELPSYRT F + GF
Sbjct: 1   MSRVKLGHHYYYIVTPQDLRDGKYKGKNIVIEGEIKDKPIIEFLPMELPSYRTIFRVSGF 60

Query: 61  KVEFSGTPYIKLGDKVKVYGVFVGDGIIARAIETEGAIYLTEE 103
           KVEFSGTP +++G+KVKVYGVFVGDGIIARAIETEGAIY+TEE
Sbjct: 61  KVEFSGTPNVRMGEKVKVYGVFVGDGIIARAIETEGAIYITEE 103


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.145    0.419 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41008147
Number of Sequences: 2977
Number of extensions: 1649415
Number of successful extensions: 2976
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2974
Number of HSP's gapped (non-prelim): 2
length of query: 103
length of database: 189,106,746
effective HSP length: 49
effective length of query: 54
effective length of database: 159,780,883
effective search space: 8628167682
effective search space used: 8628167682
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 159 (66.3 bits)