BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1287 (PAB1287) DE:Hypothetical protein
(179 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75010 hypothetical protein PAB1287 - Pyrococcus abyssi (st... 355 2e-97
pir||H71141 hypothetical protein PH0347 - Pyrococcus horikoshii ... 244 4e-64
gb|AAC63656.1| (AC005170) unknown protein [Arabidopsis thaliana] 88 7e-17
gb|AAG29220.1|AC079829_17 (AC079829) hypothetical protein [Arabi... 86 2e-16
pir||T41359 hypothetical protein SPCC4G3.17 - fission yeast (Sc... 85 4e-16
gb|AAK42539.1| Conserved hypothetical protein [Sulfolobus solfat... 83 2e-15
gi|6321337 Ygl101wp [Saccharomyces cerevisiae] >gi|1723896|sp|P5... 78 5e-14
gb|AAF52408.1| (AE003614) CG11050 gene product [Drosophila melan... 78 6e-14
gi|6319719 Probable ATP/GTP-binding protein; Ybr242wp [Saccharom... 77 1e-13
gi|10803662 ORF H1364 [Halobacterium sp. NRC-1] >gi|7484085|pir|... 74 1e-12
pir||T28955 hypothetical protein F45F2.9 - Caenorhabditis elegan... 71 1e-11
>pir||E75010 hypothetical protein PAB1287 - Pyrococcus abyssi (strain Orsay)
>gi|5459037|emb|CAB50523.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 179
Score = 355 bits (901), Expect = 2e-97
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MILMIEKILLAQTLKRLPRMGWLISGIPNPESVADHSFGVAFISLLLLNKIKEEGVKIDE 60
MILMIEKILLAQTLKRLPRMGWLISGIPNPESVADHSFGVAFISLLLLNKIKEEGVKIDE
Sbjct: 1 MILMIEKILLAQTLKRLPRMGWLISGIPNPESVADHSFGVAFISLLLLNKIKEEGVKIDE 60
Query: 61 NRVLKMAIIHDIGEALITDIPLRAQKYLDKDAAEDKAVKEIFPEFYELYREYQEGKSLEA 120
NRVLKMAIIHDIGEALITDIPLRAQKYLDKDAAEDKAVKEIFPEFYELYREYQEGKSLEA
Sbjct: 61 NRVLKMAIIHDIGEALITDIPLRAQKYLDKDAAEDKAVKEIFPEFYELYREYQEGKSLEA 120
Query: 121 QLVKFADKIDMVLQAWQYELSGNKNLEDFWRALEELEKLEIARYFKELLEEVRRLKGDI 179
QLVKFADKIDMVLQAWQYELSGNKNLEDFWRALEELEKLEIARYFKELLEEVRRLKGDI
Sbjct: 121 QLVKFADKIDMVLQAWQYELSGNKNLEDFWRALEELEKLEIARYFKELLEEVRRLKGDI 179
>pir||H71141 hypothetical protein PH0347 - Pyrococcus horikoshii
>gi|3256738|dbj|BAA29421.1| (AP000002) 177aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 177
Score = 244 bits (617), Expect = 4e-64
Identities = 113/176 (64%), Positives = 148/176 (83%)
Query: 1 MILMIEKILLAQTLKRLPRMGWLISGIPNPESVADHSFGVAFISLLLLNKIKEEGVKIDE 60
M +MIEKILL QTLKRLPRMGWLI G+ PES+ADHSFGVAFI+L+L + +++ G +ID
Sbjct: 1 MKVMIEKILLVQTLKRLPRMGWLIKGVQEPESIADHSFGVAFITLVLADVLEKRGKRIDV 60
Query: 61 NRVLKMAIIHDIGEALITDIPLRAQKYLDKDAAEDKAVKEIFPEFYELYREYQEGKSLEA 120
+ LKMAI+HD+ EA+ITDIPL AQ+++DKD AE K++FPEFYELYREYQE S EA
Sbjct: 61 EKALKMAIVHDLAEAIITDIPLSAQEFVDKDKAEALVFKKVFPEFYELYREYQECSSPEA 120
Query: 121 QLVKFADKIDMVLQAWQYELSGNKNLEDFWRALEELEKLEIARYFKELLEEVRRLK 176
QLV+ ADK+DM+LQA+QYELSGNKNL++FW A+EE+++LE+++Y +++L V RLK
Sbjct: 121 QLVRIADKLDMILQAYQYELSGNKNLDEFWEAIEEIKRLELSKYLEDILNSVGRLK 176
>gb|AAC63656.1| (AC005170) unknown protein [Arabidopsis thaliana]
Length = 243
Score = 87.8 bits (214), Expect = 7e-17
Identities = 51/145 (35%), Positives = 84/145 (57%), Gaps = 15/145 (10%)
Query: 5 IEKILLAQTLKRLPRMGWLISGIPNPESVADHSFGVAFISLLLLNKIKEEGVKIDENRVL 64
I+ + L LK PR GW+ + +PES+ADH + + ++L I + ++ ++ +
Sbjct: 80 IDFLSLCTRLKTTPRAGWIKRDVKDPESIADHMYRMGLMAL-----ISSDIPGVNRDKCM 134
Query: 65 KMAIIHDIGEALITDI-PLRAQKYLDKDAAEDKAVK---------EIFPEFYELYREYQE 114
KMAI+HDI EA++ DI P +K+ E +A++ E E EL+REY+E
Sbjct: 135 KMAIVHDIAEAIVGDITPSCGISKEEKNRRESEALEHMCKLLGGGERAKEIAELWREYEE 194
Query: 115 GKSLEAQLVKFADKIDMVLQAWQYE 139
S EA++VK DK++++LQA +YE
Sbjct: 195 NSSPEAKVVKDFDKVELILQALEYE 219
>gb|AAG29220.1|AC079829_17 (AC079829) hypothetical protein [Arabidopsis thaliana]
Length = 248
Score = 86.2 bits (210), Expect = 2e-16
Identities = 52/137 (37%), Positives = 77/137 (55%), Gaps = 15/137 (10%)
Query: 24 ISGIPNPESVADHSFGVAFISLLLLNKIKEEGVKIDENRVLKMAIIHDIGEALITDI-PL 82
+ GI PES+ADH + +A ++L I + +D R +KMAI+HDI EA++ DI P
Sbjct: 85 LKGINGPESIADHMYRMALMAL-----IAGDLTGVDRERCIKMAIVHDIAEAIVGDITPS 139
Query: 83 RAQKYLDKDAAEDKAVKEIFP---------EFYELYREYQEGKSLEAQLVKFADKIDMVL 133
+K E A+KE+ E EL+ EY+ SLEA +VK DK++M+L
Sbjct: 140 DGVPKEEKSRRETAALKEMCEVLGGGLRAEEITELWLEYENNASLEANIVKDFDKVEMIL 199
Query: 134 QAWQYELSGNKNLEDFW 150
QA +YE K L++F+
Sbjct: 200 QALEYEAEHGKVLDEFF 216
>pir||T41359 hypothetical protein SPCC4G3.17 - fission yeast
(Schizosaccharomyces pombe) >gi|2213560|emb|CAB09764.1|
(Z97052) hypothetical protein [Schizosaccharomyces
pombe]
Length = 198
Score = 85.4 bits (208), Expect = 4e-16
Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 21/173 (12%)
Query: 14 LKRLPRMGWLISGIPNPESVADHSFGVAFISLLLLNKIKEEGVKIDENRVLKMAIIHDIG 73
LK PR GWL GI PES+ADH + + +++L I++ R LK+A++HD+
Sbjct: 19 LKTTPRTGWLYHGIEKPESIADHMYRMGILTMLC------NDPSINKERCLKIAVVHDMA 72
Query: 74 EALITDIP-----LRAQKYLDKDAAEDKAVKEIFP--------EFYELYREYQEGKSLEA 120
E+++ DI + +K+ + A +++ P E EL+ EY+ + EA
Sbjct: 73 ESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKELFLEYESASTPEA 132
Query: 121 QLVKFADKIDMVLQAWQYE--LSGNKNLEDFWRALEELEKLEIARYFKELLEE 171
+ VK DK +M+ Q ++YE +G K+L F A + ++ + + ++L+E
Sbjct: 133 KFVKDIDKFEMIAQMFEYERKFNGEKDLSQFTWAGKLIQHPLVKGWLNDVLQE 185
>gb|AAK42539.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 182
Score = 82.7 bits (201), Expect = 2e-15
Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 3/172 (1%)
Query: 10 LAQTLKRLPRMGWLISGIPNP--ESVADHSFGVAFISLLLLNKIKEEGVKIDENRVLKMA 67
L + K L R GW+ +GIP+ E+VA HSF + ++ +L ++K +G++I+ +A
Sbjct: 6 LLEGAKNLVRTGWMQNGIPSAMGETVASHSFEASILAYVLATELKRKGIEINPEHSALIA 65
Query: 68 IIHDIGEALITDIPLRAQKYLDKDAAEDKAVKEIFPEFYELYREYQEGKSLEAQLVKFAD 127
+ HD GE L+ D+P A ++K AE +A E+ EL+ E ++ + EA++ K +D
Sbjct: 66 LFHDAGETLLGDLPKWATSRINKRDAEVEAFDEL-GIGKELFLELKDLNTNEAKVAKLSD 124
Query: 128 KIDMVLQAWQYELSGNKNLEDFWRALEELEKLEIARYFKELLEEVRRLKGDI 179
++ LQ +Y+ G E EE++KL ++ E V R+ +
Sbjct: 125 RLSTYLQGLRYKRIGFNVDEIISSYAEEIDKLLSIEPLNQIRELVTRIMNSL 176
>gi|6321337 Ygl101wp [Saccharomyces cerevisiae]
>gi|1723896|sp|P53144|YGK1_YEAST HYPOTHETICAL 25.3 KD
PROTEIN IN RPL28-SEH1 INTERGENIC REGION
>gi|2131585|pir||S64108 hypothetical protein YGL101w -
yeast (Saccharomyces cerevisiae)
>gi|1322641|emb|CAA96807.1| (Z72623) ORF YGL101w
[Saccharomyces cerevisiae]
Length = 215
Score = 78.4 bits (190), Expect = 5e-14
Identities = 49/177 (27%), Positives = 93/177 (51%), Gaps = 21/177 (11%)
Query: 10 LAQTLKRLPRMGWLISGIPNPESVADHSFGVAFISLLLLNKIKEEGVKIDENRVLKMAII 69
+ Q LK R GW+ GI ES++DH + + ++L+ +K +D N+ +++A++
Sbjct: 35 IIQLLKTQRRTGWVDHGIDPCESISDHMYRMGLTTMLITDK------NVDRNKCIRIALV 88
Query: 70 HDIGEALITDI-PLRAQKYLDKDAAEDKAVKEIFP------------EFYELYREYQEGK 116
HD E+L+ DI P +K E + VK + E + + Y++
Sbjct: 89 HDFAESLVGDITPNDPMTKEEKHRREFETVKYLCESIIRPCSESASREILDDWLAYEKQT 148
Query: 117 SLEAQLVKFADKIDMVLQAWQYE--LSGNKNLEDFWRALEELEKLEIARYFKELLEE 171
LE + VK DK +M++Q ++YE +G K+L+ F A+ +++ E+ ++ + LLE+
Sbjct: 149 CLEGRYVKDIDKYEMLVQCFEYEQKYNGKKDLKQFLGAINDIKTDEVKKWTQSLLED 205
>gb|AAF52408.1| (AE003614) CG11050 gene product [Drosophila melanogaster]
Length = 388
Score = 78.0 bits (189), Expect = 6e-14
Identities = 46/142 (32%), Positives = 82/142 (57%), Gaps = 13/142 (9%)
Query: 10 LAQTLKRLPRMGWLISGIPNPESVADHSFGVAFISLLLLNKIKEEGVKIDENRVLKMAII 69
L LK R GW++ + + ES++ H + ++ ++ LL EG +++ R +++A++
Sbjct: 186 LIGNLKHTKRTGWVLRDVNDCESISGHMYRMSMLTFLLDGS---EG--LNQIRCMELALV 240
Query: 70 HDIGEALITDI-PLRAQKYLDKDAAEDKAVKEIFP-------EFYELYREYQEGKSLEAQ 121
HD+ E+L+ DI P DK A E KA+++I EL+ EY+ G++ E++
Sbjct: 241 HDLAESLVGDITPFCGISKDDKRAMEFKAMEDICKLIEPRGKRIMELFEEYEHGQTAESK 300
Query: 122 LVKFADKIDMVLQAWQYELSGN 143
VK D++DMV+QA++YE N
Sbjct: 301 FVKDLDRLDMVMQAFEYEKRDN 322
>gi|6319719 Probable ATP/GTP-binding protein; Ybr242wp [Saccharomyces
cerevisiae] >gi|586369|sp|P38331|YB92_YEAST HYPOTHETICAL
27.6 KD PROTEIN IN THI2-ALG7 INTERGENIC REGION
>gi|626830|pir||S46119 probable purine
nucleotide-binding protein YBR242w - yeast
(Saccharomyces cerevisiae) >gi|536651|emb|CAA85205.1|
(Z36111) ORF YBR242w [Saccharomyces cerevisiae]
Length = 238
Score = 76.9 bits (186), Expect = 1e-13
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 21/185 (11%)
Query: 10 LAQTLKRLPRMGWLISGIPNPESVADHSFGVAFISLLLLNKIKEEGVKIDENRVLKMAII 69
+ Q LK R G+L GI ES++DH + ++ I++L+ + +++ ++ +++A++
Sbjct: 54 VVQQLKIQRRTGYLDLGIKECESISDHMYRLSIITMLIKDS------RVNRDKCVRIALV 107
Query: 70 HDIGEALITDI-PLRAQKYLDKDAAEDKAVKEIFPEFYELYRE------------YQEGK 116
HDI E+L+ DI P+ +K E + +K + + Y E Y+
Sbjct: 108 HDIAESLVGDITPVDPIGKEEKHRREWETIKYLCNALIKPYNEIAAKEIMDDWLAYENVT 167
Query: 117 SLEAQLVKFADKIDMVLQAWQY--ELSGNKNLEDFWRALEELEKLEIARYFKELLEEVRR 174
SLEA+ VK DK +M++Q ++Y E G KN +DF+ A+ ++ E+ + +L+ + ++
Sbjct: 168 SLEARYVKDIDKYEMLVQCFEYEREYKGTKNFDDFFGAVASIKTDEVKGWTSDLVVQRQK 227
Query: 175 LKGDI 179
D+
Sbjct: 228 YFADL 232
>gi|10803662 ORF H1364 [Halobacterium sp. NRC-1] >gi|7484085|pir||T08332
conserved hypothetical protein H1364 - Halobacterium sp.
(strain NRC-1) plasmid pNRC100
>gi|2822393|gb|AAC82899.1| (AF016485) ORF H1364
[Halobacterium sp. NRC-1]
Length = 203
Score = 73.7 bits (178), Expect = 1e-12
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 16/158 (10%)
Query: 14 LKRLPRMGWLISGIPNPESVADHSFGVAFISLLLLNKIKEEGVKIDENRVLKMAIIHDIG 73
LK R GW + + +PESVA H++G A + LL ++ +D + + MA+IHD+G
Sbjct: 15 LKDELRTGWELRNVDSPESVAAHTWGTAALCLLYADQ-----EDVDRQKAVTMALIHDLG 69
Query: 74 EALITDIPLRAQ------KYLDKDAAEDKAVKEIF-----PEFYELYREYQEGKSLEAQL 122
EA DI RA+ +K+ AE AV ++ E L+ EY+ + AQ
Sbjct: 70 EARTGDIATRAEDGRQTIPTSEKETAERSAVTDLVGPFNDSELLSLWEEYEARDTPTAQF 129
Query: 123 VKFADKIDMVLQAWQYELSGNKNLEDFWRALEELEKLE 160
VK D +D LQA +YE + + E E L+
Sbjct: 130 VKDMDLVDNCLQALKYERQNRYDEAETTDHFTEFENLD 167
>pir||T28955 hypothetical protein F45F2.9 - Caenorhabditis elegans
>gi|1458304|gb|AAC48030.1| (U64845) F45F2.9 gene product
[Caenorhabditis elegans]
Length = 158
Score = 70.6 bits (170), Expect = 1e-11
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 28/171 (16%)
Query: 2 ILMIEKILLAQTLKRLPRMGWLISGIPNPESVADHSFGVAFISLLLLNKIKEEGVKIDEN 61
+ + E + + LK L R GW+ G+P PE+VA H + +A +++ L +I +D
Sbjct: 4 VKIFELLDVLDNLKHLKRTGWVKCGVPEPETVACHMYRMAVLAMALEGQID----GLDAI 59
Query: 62 RVLKMAI-IHDIGEALITDIPLRAQKYLDKDAAEDKAVKEIFPEFYELYREYQEGKSLEA 120
R +KMA+ I+ I V + E+ L++EY+E SL A
Sbjct: 60 RTVKMALAINTIA----------------------SFVPNVGEEWTMLWKEYEEASSLTA 97
Query: 121 QLVKFADKIDMVLQAWQYELSGNKNLEDFWRALEELEKLE-IARYFKELLE 170
++VK DK DM++QA +YE + +L+ F+ + + K+E A + +EL E
Sbjct: 98 RVVKHLDKFDMIVQADKYEKTHEIDLQQFFTSTVGVLKMEPFATWDRELRE 148
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60959474
Number of Sequences: 2977
Number of extensions: 2319829
Number of successful extensions: 8157
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 8141
Number of HSP's gapped (non-prelim): 12
length of query: 179
length of database: 189,106,746
effective HSP length: 55
effective length of query: 124
effective length of database: 156,189,961
effective search space: 19367555164
effective search space used: 19367555164
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)