BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1290 (PAB1290) DE:Hypothetical protein
(537 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75009 hypothetical protein PAB1290 - Pyrococcus abyssi (st... 1066 0.0
pir||B71143 hypothetical protein PH0357 - Pyrococcus horikoshii ... 601 e-171
>pir||E75009 hypothetical protein PAB1290 - Pyrococcus abyssi (strain Orsay)
>gi|5459029|emb|CAB50515.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 537
Score = 1066 bits (2727), Expect = 0.0
Identities = 537/537 (100%), Positives = 537/537 (100%)
Query: 1 MKGGNTMKRELILVVFVSILLIPIAHAQVSTFPVNGEIICLVNSTTSGEFGLINELPVDF 60
MKGGNTMKRELILVVFVSILLIPIAHAQVSTFPVNGEIICLVNSTTSGEFGLINELPVDF
Sbjct: 1 MKGGNTMKRELILVVFVSILLIPIAHAQVSTFPVNGEIICLVNSTTSGEFGLINELPVDF 60
Query: 61 TYVSVREIKVLDKNRNEVSGISVKLLDLIIRDWKAKDSKSIRYLAMASSNVTPGDYTLYI 120
TYVSVREIKVLDKNRNEVSGISVKLLDLIIRDWKAKDSKSIRYLAMASSNVTPGDYTLYI
Sbjct: 61 TYVSVREIKVLDKNRNEVSGISVKLLDLIIRDWKAKDSKSIRYLAMASSNVTPGDYTLYI 120
Query: 121 FMWGFTKDKMYLIRAYVPIKVSDKPLIFKDAVSFVKERPFSDVALAGDTIVVYSHVINIA 180
FMWGFTKDKMYLIRAYVPIKVSDKPLIFKDAVSFVKERPFSDVALAGDTIVVYSHVINIA
Sbjct: 121 FMWGFTKDKMYLIRAYVPIKVSDKPLIFKDAVSFVKERPFSDVALAGDTIVVYSHVINIA 180
Query: 181 STPINVTAEALLKDPLGNVIVKLKRTLSLLPGDNIIRFELQIPLNASDGRYELNYIINYE 240
STPINVTAEALLKDPLGNVIVKLKRTLSLLPGDNIIRFELQIPLNASDGRYELNYIINYE
Sbjct: 181 STPINVTAEALLKDPLGNVIVKLKRTLSLLPGDNIIRFELQIPLNASDGRYELNYIINYE 240
Query: 241 RGSYEYSKDYLVEFGVRLESFSLERTNVLEGEDNFAYIGITSDRSVDVNLTVEVYNDVLG 300
RGSYEYSKDYLVEFGVRLESFSLERTNVLEGEDNFAYIGITSDRSVDVNLTVEVYNDVLG
Sbjct: 241 RGSYEYSKDYLVEFGVRLESFSLERTNVLEGEDNFAYIGITSDRSVDVNLTVEVYNDVLG 300
Query: 301 LVYSNRSEVLIRDGPNMLKIDLPTTYPGKNTVNVRILFNGRLLGEKGGWYLVIGYPKLNV 360
LVYSNRSEVLIRDGPNMLKIDLPTTYPGKNTVNVRILFNGRLLGEKGGWYLVIGYPKLNV
Sbjct: 301 LVYSNRSEVLIRDGPNMLKIDLPTTYPGKNTVNVRILFNGRLLGEKGGWYLVIGYPKLNV 360
Query: 361 TLENKNLVITVENPNNFNIMTELGYRVEWSNGRIMKDVFSLNLDPGVRRLIIRLNGTGEF 420
TLENKNLVITVENPNNFNIMTELGYRVEWSNGRIMKDVFSLNLDPGVRRLIIRLNGTGEF
Sbjct: 361 TLENKNLVITVENPNNFNIMTELGYRVEWSNGRIMKDVFSLNLDPGVRRLIIRLNGTGEF 420
Query: 421 KYKVTLEAFGRLKTINGSGVVRAEPEPETEIVSKNMTSTTSKPSGTSTMSPTQSTTSKTS 480
KYKVTLEAFGRLKTINGSGVVRAEPEPETEIVSKNMTSTTSKPSGTSTMSPTQSTTSKTS
Sbjct: 421 KYKVTLEAFGRLKTINGSGVVRAEPEPETEIVSKNMTSTTSKPSGTSTMSPTQSTTSKTS 480
Query: 481 PAIRGNKGNTTLILAVVLGSLIIFILGLSYYYYTTNQKRRRRKRPKPRRRSPLGRVR 537
PAIRGNKGNTTLILAVVLGSLIIFILGLSYYYYTTNQKRRRRKRPKPRRRSPLGRVR
Sbjct: 481 PAIRGNKGNTTLILAVVLGSLIIFILGLSYYYYTTNQKRRRRKRPKPRRRSPLGRVR 537
>pir||B71143 hypothetical protein PH0357 - Pyrococcus horikoshii
>gi|3256748|dbj|BAA29431.1| (AP000002) 520aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 520
Score = 601 bits (1534), Expect = e-171
Identities = 287/529 (54%), Positives = 391/529 (73%), Gaps = 10/529 (1%)
Query: 9 RELILVVFVSILLIPIAHAQVSTFPVNGEIICLVNSTTSGEFGLINELPVDFTYVSVREI 68
R++++ + + +L++P+ AQV+ F VNGE++CL NSTTSGEF L+N L VDFTYVSVRE+
Sbjct: 2 RKILITIVLLLLILPLVKAQVTNFLVNGEVLCLTNSTTSGEFELVNPLSVDFTYVSVREV 61
Query: 69 KVLDKNRNEVSGISVKLLDLIIRDWKAKDSKSIRYLAMASSNVTPGDYTLYIFMWGFTKD 128
KVLD++ N+V GIS+ L+DLII++WKAK+SK+IRY A ASS+V PGDYTLY+FMWGFT++
Sbjct: 62 KVLDRDGNQVQGISINLVDLIIKNWKAKESKTIRYFAKASSDVKPGDYTLYLFMWGFTQN 121
Query: 129 KMYLIRAYVPIKVSDKPLIFKDAVSFVKERPFSDVALAGDTIVVYSHVINIASTPINVTA 188
K+YL+RAYVP+KVSDKPLIF +A SFVKE PFS+VAL G T+VVYSHV N+AS+P+NVT+
Sbjct: 122 KLYLLRAYVPLKVSDKPLIFHEATSFVKENPFSNVALTGSTLVVYSHVTNVASSPLNVTS 181
Query: 189 EALLKDPLGNVIVKLKRTLSLLPGDNIIRFELQIPLNASDGRYELNYIINYERGSYEYSK 248
EA L+D GN++VK RT++LLPGDNI+RFE+ IPL DG+YELNYII Y+RGSYE+SK
Sbjct: 182 EAYLEDSFGNIVVKSNRTITLLPGDNIVRFEIPIPLTLPDGKYELNYIIRYDRGSYEFSK 241
Query: 249 DYLVEFGVRLESFSLERTNVLEGEDNFAYIGITSDRSVDVNLTVEVYNDVLGLVYSNRSE 308
+YLVEFGV + S+ERTNVLEGE N+ Y+ I+SDR++ +NLTV VYNDV G VY NRSE
Sbjct: 242 EYLVEFGVSFKGVSIERTNVLEGEKNYVYLTISSDRNIPLNLTVRVYNDVNGFVYLNRSE 301
Query: 309 VLIRDGPNMLKIDLPTTYPGKNTVNVRILFNGRLLGEKGGWYLVIGYPKLNVTLENKNLV 368
V I G +++K+ LPT YPGKNT+ + F R +GE GWYLV+GYP++N T+++ L
Sbjct: 302 VFINKGSSIVKVKLPTDYPGKNTLIATLEFGNRTIGEGSGWYLVVGYPRINSTVKDSMLQ 361
Query: 369 ITVENPNNFNIMTELGYRVEWSNGRIMKDVFSLNLDPGVRRLIIRLNGTGEFKYKVTLEA 428
+ ++NPN F+I +L YR+EW +GRI+K + + PG + I+L G G+FKY ++L
Sbjct: 362 VLLDNPNGFSIKGKLEYRIEWEDGRIVKKSVDIEIPPGSEVITIKLEGVGKFKYNISLNV 421
Query: 429 FGRLKTINGSGVVRAEPEPETEIVSKNMTSTTSKPSGTSTMSPTQSTTSKTSPAIRGNKG 488
FG+ G+G E E TT+ T+T SP + T SKT + +K
Sbjct: 422 FGKEIRTGGTG--------EIERQKMGTFKTTTSKERTTTSSP-KITHSKTQTLVEKHKE 472
Query: 489 NTTLILAVVLGSLIIFILGLSYYYYTTNQKRRRRKRPKPRRRSPLGRVR 537
+L+L + L I+ ++ +Y + KRRR++R KP+RRSPLGRV+
Sbjct: 473 RRSLLL-IFLVVTILIVISAGILWYLKSPKRRRKRRKKPKRRSPLGRVK 520
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205061562
Number of Sequences: 2977
Number of extensions: 9174156
Number of successful extensions: 34303
Number of sequences better than 1.0e-10: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34295
Number of HSP's gapped (non-prelim): 2
length of query: 537
length of database: 189,106,746
effective HSP length: 58
effective length of query: 479
effective length of database: 154,394,500
effective search space: 73954965500
effective search space used: 73954965500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)