BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1291 (PAB1291) DE:Hypothetical protein
(136 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75009 hypothetical protein PAB1291 - Pyrococcus abyssi (st... 266 1e-70
pir||C71143 hypothetical protein PH0358 - Pyrococcus horikoshii ... 212 2e-54
gi|11498072 conserved hypothetical protein [Archaeoglobus fulgid... 81 5e-15
pir||H69226 conserved hypothetical protein MTH949 - Methanobacte... 80 1e-14
pir||G64452 hypothetical protein MJ1224 - Methanococcus jannasch... 70 9e-12
>pir||D75009 hypothetical protein PAB1291 - Pyrococcus abyssi (strain Orsay)
>gi|5459028|emb|CAB50514.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 136
Score = 266 bits (672), Expect = 1e-70
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MERVERIIEFEIARINSHLPRARKSLKDLLNMEEPMITLRDGSVHYFKRQELELLASLLD 60
MERVERIIEFEIARINSHLPRARKSLKDLLNMEEPMITLRDGSVHYFKRQELELLASLLD
Sbjct: 1 MERVERIIEFEIARINSHLPRARKSLKDLLNMEEPMITLRDGSVHYFKRQELELLASLLD 60
Query: 61 EEEIAMLRLPMVLEISTVERDKIIIRGKVEAKVIRKILGFEEAIIEEPILKLPRYYLPKI 120
EEEIAMLRLPMVLEISTVERDKIIIRGKVEAKVIRKILGFEEAIIEEPILKLPRYYLPKI
Sbjct: 61 EEEIAMLRLPMVLEISTVERDKIIIRGKVEAKVIRKILGFEEAIIEEPILKLPRYYLPKI 120
Query: 121 RRILPTTTVHAFIVEW 136
RRILPTTTVHAFIVEW
Sbjct: 121 RRILPTTTVHAFIVEW 136
>pir||C71143 hypothetical protein PH0358 - Pyrococcus horikoshii
>gi|3256749|dbj|BAA29432.1| (AP000002) 136aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 136
Score = 212 bits (533), Expect = 2e-54
Identities = 101/136 (74%), Positives = 124/136 (90%)
Query: 1 MERVERIIEFEIARINSHLPRARKSLKDLLNMEEPMITLRDGSVHYFKRQELELLASLLD 60
ME++E+IIEFEIARINSHLPRAR+SLK+LL M+E +TLRDGS HYFKR+EL+LLA+LLD
Sbjct: 1 MEKIEKIIEFEIARINSHLPRARRSLKELLEMKEAKVTLRDGSEHYFKREELKLLANLLD 60
Query: 61 EEEIAMLRLPMVLEISTVERDKIIIRGKVEAKVIRKILGFEEAIIEEPILKLPRYYLPKI 120
E+EI+ L+LP+V+EIST+ERDKI+IRG+VE KVI+K+LG EE +EE +LKLPRYYL +I
Sbjct: 61 EDEISKLKLPIVIEISTLERDKIMIRGRVEVKVIKKVLGLEEGYLEENVLKLPRYYLAEI 120
Query: 121 RRILPTTTVHAFIVEW 136
RR LPTTTVHAFIVEW
Sbjct: 121 RRKLPTTTVHAFIVEW 136
>gi|11498072 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7446632|pir||D69307 conserved hypothetical protein
AF0460 - Archaeoglobus fulgidus
>gi|2650169|gb|AAB90777.1| (AE001073) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 134
Score = 81.1 bits (197), Expect = 5e-15
Identities = 41/125 (32%), Positives = 77/125 (60%), Gaps = 3/125 (2%)
Query: 5 ERIIEFEIARINSHLPRARKSLKDLLNMEEPMITLRDGSVHYFKRQELELLASLLDEEEI 64
E+ + I +N H+P +SL ++L ++P I +DG+ +Y +++ELE +A +DE +
Sbjct: 3 EKTLAKMIEAVNKHMPEKTRSLAEMLKEKDPTIRAKDGNEYYIEKRELEFIAQHVDELDW 62
Query: 65 AMLRLPMVLEISTVERDKII-IRGKVEAKVIRKILGFEEAIIEEPILKLPRYYLPKIRRI 123
R+P++LE++ + +++I +R K+ A+ I++ GF+ + IL L Y LP+IRR
Sbjct: 63 PRFRIPVILEMNDIGGERVIYVRDKLHAEFIKRAFGFDRVL--NGILTLYMYELPQIRRK 120
Query: 124 LPTTT 128
L T +
Sbjct: 121 LRTAS 125
>pir||H69226 conserved hypothetical protein MTH949 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622046|gb|AAB85445.1| (AE000869) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 135
Score = 79.6 bits (193), Expect = 1e-14
Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 4/133 (3%)
Query: 2 ERVERIIEFEIARINSHLPRARKSLKDLLNMEEPMITLRDGSVHYFKRQELELLASLLDE 61
+R +R+++ EI +N HLP RK+L++LL + P +T DG+ H FK ELE L +L E
Sbjct: 4 DRSDRLMKKEIFNLNRHLPSRRKTLEELLREDRPHVTGADGTRHRFKWAELEDLRGMLTE 63
Query: 62 EEIAMLRLPMVLEISTVERDKIIIRGKVEAKVIRKILGFEEAIIEEPILKLPRYYLPKIR 121
+E LRLP+ +EI + E I G +E KV+ ++L ++ E + + R + +R
Sbjct: 64 DEARRLRLPIYIEIES-ETSGARIAGDIEVKVVSEVLERDD---EGDEIYIYRPEMRVLR 119
Query: 122 RILPTTTVHAFIV 134
PT T + F+V
Sbjct: 120 ARFPTVTQYMFLV 132
>pir||G64452 hypothetical protein MJ1224 - Methanococcus jannaschii
>gi|1591855|gb|AAB99227.1| (U67563) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 139
Score = 70.2 bits (169), Expect = 9e-12
Identities = 49/129 (37%), Positives = 76/129 (57%), Gaps = 8/129 (6%)
Query: 1 MERVERIIEFEIARINSHLPRARKSLKDLLNMEEPMITLRDGSVHYFKRQELELLASLLD 60
M VE+II+ I +N R K+L++LL+ E+P + + +G H KR+ELE L +
Sbjct: 8 MRDVEKIIKGIIKDMNPRFKR--KTLRELLSEEKPHVII-NGKRHRIKRRELEFLKEIAS 64
Query: 61 EEEIAMLRLPMVLEISTVERDKIIIRGKVEAKVIRKILGFE-EAIIEEPILKLPRYYLPK 119
E+ L++P+VLE+ + I I GK E KVI KILG E + E+ ++ + + L
Sbjct: 65 ED----LKIPIVLEVDSSLGGAIKISGKEEVKVISKILGKEIDIFSEKDVMYIYKPELKI 120
Query: 120 IRRILPTTT 128
+R+ LPTTT
Sbjct: 121 VRKELPTTT 129
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.143 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44135661
Number of Sequences: 2977
Number of extensions: 1622703
Number of successful extensions: 4026
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4021
Number of HSP's gapped (non-prelim): 5
length of query: 136
length of database: 189,106,746
effective HSP length: 54
effective length of query: 82
effective length of database: 156,788,448
effective search space: 12856652736
effective search space used: 12856652736
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 161 (67.1 bits)