BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1294 (PAB1294) DE:Hypothetical protein
         (595 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75008 hypothetical protein PAB1294 - Pyrococcus abyssi (st...  1159  0.0
pir||E71146 hypothetical protein PH0383 - Pyrococcus horikoshii ...   346  4e-94

>pir||F75008 hypothetical protein PAB1294 - Pyrococcus abyssi (strain Orsay)
           >gi|5459022|emb|CAB50508.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 595
           
 Score = 1159 bits (2966), Expect = 0.0
 Identities = 595/595 (100%), Positives = 595/595 (100%)

Query: 1   MRRILISMLIITLMFPIVHGDPRTLKVEDVKMSDKGLYEFFSYILDLASESLDQIIEQSN 60
           MRRILISMLIITLMFPIVHGDPRTLKVEDVKMSDKGLYEFFSYILDLASESLDQIIEQSN
Sbjct: 1   MRRILISMLIITLMFPIVHGDPRTLKVEDVKMSDKGLYEFFSYILDLASESLDQIIEQSN 60

Query: 61  STSYIELSRILNKTRDEAYIYKSRGIETKVLDVLPPFLKLSEGIGNILKGRSSFLMYYSM 120
           STSYIELSRILNKTRDEAYIYKSRGIETKVLDVLPPFLKLSEGIGNILKGRSSFLMYYSM
Sbjct: 61  STSYIELSRILNKTRDEAYIYKSRGIETKVLDVLPPFLKLSEGIGNILKGRSSFLMYYSM 120

Query: 121 FKNNEMPELITAMEESLIIMDDGIKEAKLALIRISKIEFSGAGKLDVNDILEKLNKLERE 180
           FKNNEMPELITAMEESLIIMDDGIKEAKLALIRISKIEFSGAGKLDVNDILEKLNKLERE
Sbjct: 121 FKNNEMPELITAMEESLIIMDDGIKEAKLALIRISKIEFSGAGKLDVNDILEKLNKLERE 180

Query: 181 SSYYHKILERLKSRVTYPRKGLILFVSNANPYVLENVTFYGFAKNASSVQILINGSILKA 240
           SSYYHKILERLKSRVTYPRKGLILFVSNANPYVLENVTFYGFAKNASSVQILINGSILKA
Sbjct: 181 SSYYHKILERLKSRVTYPRKGLILFVSNANPYVLENVTFYGFAKNASSVQILINGSILKA 240

Query: 241 NVDNGFFSVNYSFPLPGIYSAVAKSGNLTSNTVIINVSKRKTVFVVPSEVYGRIGETVVI 300
           NVDNGFFSVNYSFPLPGIYSAVAKSGNLTSNTVIINVSKRKTVFVVPSEVYGRIGETVVI
Sbjct: 241 NVDNGFFSVNYSFPLPGIYSAVAKSGNLTSNTVIINVSKRKTVFVVPSEVYGRIGETVVI 300

Query: 301 SGFLRDNLGYGVPGKEIVIDYKGKATKLITGENGNFSIKVKESEWGSYKLFLVFRGDEIY 360
           SGFLRDNLGYGVPGKEIVIDYKGKATKLITGENGNFSIKVKESEWGSYKLFLVFRGDEIY
Sbjct: 301 SGFLRDNLGYGVPGKEIVIDYKGKATKLITGENGNFSIKVKESEWGSYKLFLVFRGDEIY 360

Query: 361 EGSYSEVNVIFLRLPVTLKISGKDKVRIGEEITIKGYTSVPGIPLNVIVDGKLNKTIYST 420
           EGSYSEVNVIFLRLPVTLKISGKDKVRIGEEITIKGYTSVPGIPLNVIVDGKLNKTIYST
Sbjct: 361 EGSYSEVNVIFLRLPVTLKISGKDKVRIGEEITIKGYTSVPGIPLNVIVDGKLNKTIYST 420

Query: 421 GNSFSFTLVFKDRGRHEIMVSFSGDSTYSPATSNKLVITVYALSESEISIILGTLVVVLL 480
           GNSFSFTLVFKDRGRHEIMVSFSGDSTYSPATSNKLVITVYALSESEISIILGTLVVVLL
Sbjct: 421 GNSFSFTLVFKDRGRHEIMVSFSGDSTYSPATSNKLVITVYALSESEISIILGTLVVVLL 480

Query: 481 LLLFGVPRRRKLSILDQAGIEALKDFIKKESTPRSLGVREWYRKIYYKLIEVNKLPRSTT 540
           LLLFGVPRRRKLSILDQAGIEALKDFIKKESTPRSLGVREWYRKIYYKLIEVNKLPRSTT
Sbjct: 481 LLLFGVPRRRKLSILDQAGIEALKDFIKKESTPRSLGVREWYRKIYYKLIEVNKLPRSTT 540

Query: 541 PRELASIMNEEPLRYATYIHEKAVYGMKKLSNSEIVSFLKAVSRVLLNIIFGEGV 595
           PRELASIMNEEPLRYATYIHEKAVYGMKKLSNSEIVSFLKAVSRVLLNIIFGEGV
Sbjct: 541 PRELASIMNEEPLRYATYIHEKAVYGMKKLSNSEIVSFLKAVSRVLLNIIFGEGV 595


>pir||E71146 hypothetical protein PH0383 - Pyrococcus horikoshii
           >gi|3256775|dbj|BAA29458.1| (AP000002) 633aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 633
           
 Score =  346 bits (878), Expect = 4e-94
 Identities = 225/610 (36%), Positives = 347/610 (56%), Gaps = 47/610 (7%)

Query: 1   MRRILISMLIITLMFPIVHGDPRTLKVEDVKMSDKGLYEFFSYILDLASESLDQIIEQS- 59
           MR++L  +L+  L+ P+V  + R + + +V+ +D+G Y FFS +L L+ E+L+ + E++ 
Sbjct: 54  MRKLLALLLLTVLIGPVV-AEVRQVPLSEVRENDEGYYLFFSTLLKLSGEALEDVAEENL 112

Query: 60  NSTSYIELSRILNKTRDEAYIYKSRGIETKVLDVLPPFLKLSEGIGNILKGRSSFLMYYS 119
           NST    +  I+N T  E+ +Y S  IE    D LPPF+ L EGI  I  G+   L    
Sbjct: 113 NSTLPQRIQGIINATLVESQLYGSSRIE----DFLPPFITLGEGIMEISDGQRMIL---- 164

Query: 120 MFKNNEMPELITAMEESLIIMDDGIKEAKLALIRISKIEF---SGAGK-LDVNDILEKLN 175
              +  +PE ++ +     +M  G+++ ++++  IS ++F   +G  K LDV+ + ++L+
Sbjct: 165 --NSTSLPEKLSGLS----MMSKGVEKCEISISEISGLKFKMSNGTFKYLDVSKVKDELD 218

Query: 176 KLERESSYYHKILERLKSRVTYPRKGLILFVSNANPYVLENVTFYGFAKNASSVQILING 235
           K++     Y  IL+R +       K  +L+ S+ NP+VLENV+FYGFA N S V I I  
Sbjct: 219 KVKDLVRTYSFILQRREG------KEFVLYTSDLNPFVLENVSFYGFAPNFSRVTIFIGN 272

Query: 236 SILKANVDNGFFSVNYSFPLPGIYSAVA-----KSGNLTSNTVIINVSKRKTVFVVPSEV 290
             L+A + N  F  NY+F  PG+Y   A         +TSN++ +NV++  T  VVP  V
Sbjct: 273 ESLEAELRNDRFYANYTFLKPGLYRVYALGVKENKSLVTSNSLTLNVTRISTRIVVPRLV 332

Query: 291 YGRIGETVVISGFLRDNLGYGVPGKEIVIDYKGKATKLITGENGNFSIKVKESEWGSYKL 350
             RI E   ++G L D  G  V G   V    GK  ++    NG FSI+   S++G+Y +
Sbjct: 333 TARIFENFTVNGSLVDYYGRYVSGSIFV---NGKELRV----NGTFSIRFSFSKYGNYSI 385

Query: 351 FLVFRGDEIYEGSYSEVNVIFLRLPVTLKIS-GKDKVRIGEEITIKGYTSVPGIPLNVIV 409
            + + G E+Y  S +EV +  LRLPV L IS  KDKVR GE I ++G  S+ G+P+ V V
Sbjct: 386 TIFYPGSEVYSPSKAEVKLTILRLPVNLSISVDKDKVRKGESIRVEGNISLGGVPVKVCV 445

Query: 410 DGKLNKTIYSTGNSFSFTLVFKDRGRHEIMVSFSGDSTYSPATSNKLVITVYALSESEIS 469
           D +   T+   G  F+ T+   + G HEI   F G   Y PA SN + + VY+    E+S
Sbjct: 446 DEECFSTLSREG-KFNATVKMNETGSHEIYAVFEGSELYEPAKSNVVEVEVYSYPILEVS 504

Query: 470 IILGTLVVVLLLLLFGVPRRRKLSIL-DQAGIEALKDFIKKESTPRSLGVREWYRKIYYK 528
           ++L +L +  LLL   +P+RR+  I+ D   I+AL    KKE   R  G+R++YR +Y++
Sbjct: 505 LVLASLFLGYLLL--NLPKRRRRGIIVDYEEIKALLKEEKKEEIERRKGIRDYYRNLYFR 562

Query: 529 LIEVNKLPRSTTPRELASIMN----EEPLRYATYIHEKAVYGMKKLSNSEIVSFLKAVSR 584
           LI+   L RSTTPREL S+       E LR  T IHE++VYGMK+L   E+  F +A++ 
Sbjct: 563 LIKTLNLSRSTTPRELLSLFKGKEIYEGLREVTLIHERSVYGMKRLRVEEVKRFFRALAS 622

Query: 585 VLLNIIFGEG 594
           V++++I GEG
Sbjct: 623 VIISLILGEG 632


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.139    0.381 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206357603
Number of Sequences: 2977
Number of extensions: 8783183
Number of successful extensions: 28398
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28380
Number of HSP's gapped (non-prelim): 2
length of query: 595
length of database: 189,106,746
effective HSP length: 60
effective length of query: 535
effective length of database: 153,197,526
effective search space: 81960676410
effective search space used: 81960676410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 168 (69.9 bits)