BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1295 (PAB1295) DE:Hypothetical protein
(342 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75008 hypothetical protein PAB1295 - Pyrococcus abyssi (st... 677 0.0
pir||F71146 hypothetical protein PH0384 - Pyrococcus horikoshii ... 388 e-107
sp|P25769|YNI3_METTL HYPOTHETICAL PROTEIN IN NIFH1 5'REGION >gi|... 75 1e-12
>pir||E75008 hypothetical protein PAB1295 - Pyrococcus abyssi (strain Orsay)
>gi|5459021|emb|CAB50507.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 342
Score = 677 bits (1729), Expect = 0.0
Identities = 342/342 (100%), Positives = 342/342 (100%)
Query: 1 MRRVVYFTLLAIGVAFLIMPVSIPVILTNVEFSIFNTGWNGCSSFAKLLYQGGEIVPVFY 60
MRRVVYFTLLAIGVAFLIMPVSIPVILTNVEFSIFNTGWNGCSSFAKLLYQGGEIVPVFY
Sbjct: 1 MRRVVYFTLLAIGVAFLIMPVSIPVILTNVEFSIFNTGWNGCSSFAKLLYQGGEIVPVFY 60
Query: 61 PLNSVSLGEEGTLLIIGPDLSYSTFEIERIRSFVLNGGTLILIDDFGTGNEILSGLNLTV 120
PLNSVSLGEEGTLLIIGPDLSYSTFEIERIRSFVLNGGTLILIDDFGTGNEILSGLNLTV
Sbjct: 61 PLNSVSLGEEGTLLIIGPDLSYSTFEIERIRSFVLNGGTLILIDDFGTGNEILSGLNLTV 120
Query: 121 RFSKKVPISIFYFKDYRLPEVIYIDDPYLSVGVEKLILNVPSVLIGANGSAYTSRITLLG 180
RFSKKVPISIFYFKDYRLPEVIYIDDPYLSVGVEKLILNVPSVLIGANGSAYTSRITLLG
Sbjct: 121 RFSKKVPISIFYFKDYRLPEVIYIDDPYLSVGVEKLILNVPSVLIGANGSAYTSRITLLG 180
Query: 181 RNLKSYPILSEIRYGKGRIILFSDPSVFTNEMMTYNRKFVENFISKYVSYPVYIDEAHHS 240
RNLKSYPILSEIRYGKGRIILFSDPSVFTNEMMTYNRKFVENFISKYVSYPVYIDEAHHS
Sbjct: 181 RNLKSYPILSEIRYGKGRIILFSDPSVFTNEMMTYNRKFVENFISKYVSYPVYIDEAHHS 240
Query: 241 NFNPYHVGTVVIRRSLNKERVFYVTAFVAVIMLLVESGLAMNVILTIIEKLYNITLKLFG 300
NFNPYHVGTVVIRRSLNKERVFYVTAFVAVIMLLVESGLAMNVILTIIEKLYNITLKLFG
Sbjct: 241 NFNPYHVGTVVIRRSLNKERVFYVTAFVAVIMLLVESGLAMNVILTIIEKLYNITLKLFG 300
Query: 301 EVEEEDLGKVIEELEKKGFDRRILDRIIKEVKVAGGLENEWA 342
EVEEEDLGKVIEELEKKGFDRRILDRIIKEVKVAGGLENEWA
Sbjct: 301 EVEEEDLGKVIEELEKKGFDRRILDRIIKEVKVAGGLENEWA 342
>pir||F71146 hypothetical protein PH0384 - Pyrococcus horikoshii
>gi|3256776|dbj|BAA29459.1| (AP000002) 330aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 330
Score = 388 bits (987), Expect = e-107
Identities = 190/333 (57%), Positives = 255/333 (76%), Gaps = 7/333 (2%)
Query: 1 MRRVVYFTLLAIGVAFLIMPVSIPVILTNVEFSIFNTGWNGCSSFAKLLYQG-GEIVPVF 59
MRR +Y L+ G+ FLI PVSIP+ L+N EFS+ NT WNG SSFAK++Y+ G ++P+
Sbjct: 1 MRRALYVILVIFGITFLITPVSIPLFLSNAEFSMLNTKWNGISSFAKMIYERKGLVIPLM 60
Query: 60 YPLNSVSLGEEGTLLIIGPDLSYSTFEIERIRSFVLNGGTLILIDDFGTGNEILSGLNLT 119
LN+V L + GTLLI+GPDL YS+ EIE+IR F+ GGTLIL+DDFGTGNEIL GLNL+
Sbjct: 61 DSLNNVEL-KGGTLLIVGPDLRYSSLEIEKIRDFLNEGGTLILMDDFGTGNEILKGLNLS 119
Query: 120 VRFSKKVPISIFYFKDYRLPEVIYIDDPYLSVGVEKLILNVPSVLIG-ANGSAYTSRITL 178
+RFS+KVP+ FYFKDYRLP V I DP LS V ++LN P+V++G G+ YTSR+TL
Sbjct: 120 IRFSRKVPVEPFYFKDYRLPIVTDIRDPVLSRNVTYIVLNYPAVIVGFGEGNVYTSRVTL 179
Query: 179 LGRNLKSYPILSEIRYGKGRIILFSDPSVFTNEMMTYNRKFVENFISKYVSYPVYIDEAH 238
LG++ +SYPIL E++YG GRI+LFSDPSVFTNEM+ NR F ENFI ++++ PVY+DEAH
Sbjct: 180 LGKDFRSYPILVELKYGNGRIVLFSDPSVFTNEMIKMNRNFAENFIDEFINPPVYVDEAH 239
Query: 239 HSNFNPYHVGTVVIRRSLNKERVFYVTAFVAVIMLLVESGLAMNVILTIIEKLYNITLKL 298
HSNFNPY+ GT+V+RRSL++E+ FYV VA + L VESGLA + +I ++ +K+
Sbjct: 240 HSNFNPYYAGTIVVRRSLDREKSFYVVLAVAGLALFVESGLAFELFNLVI----SLAIKI 295
Query: 299 FGEVEEEDLGKVIEELEKKGFDRRILDRIIKEV 331
F E+ + V+E+L K+G+DR+IL+RI++EV
Sbjct: 296 FVRGEKVRVEDVVEKLAKEGYDRKILERIVREV 328
>sp|P25769|YNI3_METTL HYPOTHETICAL PROTEIN IN NIFH1 5'REGION >gi|80956|pir||S06983
hypothetical protein (nifH1 5' region) - Methanococcus
thermolithotrophicus (fragment)
>gi|44624|emb|CAA32054.1| (X13830) ORF 96 (AA 1 - 97)
[Methanococcus thermolithotrophicus]
Length = 97
Score = 74.9 bits (181), Expect = 1e-12
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 6 YFTLLAIGVAFLIMPVSIPVILTNVEFSIFNTGWNGCSSFAKLLYQGGEIVPVFYPLNSV 65
Y L+ I V F+ MP+ IP I T +SIFNT NGCS+F KL++ I P+ YP +
Sbjct: 6 YIILMVILVGFVTMPLLIPTIKTTQTYSIFNTQENGCSNFLKLMHNSNTIKPLIYPYS-- 63
Query: 66 SLGEEGTLLIIGPDLSYSTFEIERIRSFVLNG 97
+L + L IIGPD+ +S E +R++V G
Sbjct: 64 NLRDNSILFIIGPDVEFSEDEGHLLRNYVYAG 95
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.144 0.411
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128808267
Number of Sequences: 2977
Number of extensions: 5765086
Number of successful extensions: 14765
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14759
Number of HSP's gapped (non-prelim): 3
length of query: 342
length of database: 189,106,746
effective HSP length: 54
effective length of query: 288
effective length of database: 156,788,448
effective search space: 45155073024
effective search space used: 45155073024
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)