BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1296 (moxR-2) DE:methanol dehydrogenase regulatory protein
(moxR-2)
(309 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75008 methanol dehydrogenase regulatory protein (moxr-2) P... 603 e-171
pir||G71146 hypothetical protein PH0385 - Pyrococcus horikoshii ... 506 e-142
pir||C75037 methanol dehydrogenase regulatory protein (moxr-3) P... 328 7e-89
pir||B71126 hypothetical protein PH0776 - Pyrococcus horikoshii ... 321 8e-87
pir||F71139 hypothetical protein PH0329 - Pyrococcus horikoshii ... 302 4e-81
pir||B75012 methanol dehydrogenase regulatory protein (moxr-1) P... 293 1e-78
pir||T35917 probable regulatory protein - Streptomyces coelicolo... 290 2e-77
pir||T34964 probable regulatory protein - Streptomyces coelicolo... 289 3e-77
dbj|BAB04323.1| (AP001509) methanol dehydrogenase regulatory pro... 288 6e-77
pir||B70947 probable moxR3 protein - Mycobacterium tuberculosis ... 285 4e-76
pir||E70792 probable regulatory protein - Mycobacterium tubercul... 283 2e-75
pir||H72289 hypothetical protein TM1132 - Thermotoga maritima (s... 282 5e-75
pir||D72767 hypothetical protein APE0127 - Aeropyrum pernix (str... 281 6e-75
dbj|BAB04450.1| (AP001509) unknown conserved protein [Bacillus h... 281 6e-75
pir||F72606 probable methanol dehydrogenase regulator APE1317 - ... 281 8e-75
emb|CAB90929.1| (AL355774) putative regulatory protein [Streptom... 277 1e-73
pir||C69791 methanol dehydrogenase regulation homolog yeaC - Bac... 271 7e-72
gi|11500001 methanol dehydrogenase regulatory protein (moxR) [Ar... 268 6e-71
pir||H70321 conserved hypothetical protein aq_240 - Aquifex aeol... 264 9e-70
emb|CAB98184.1| (AJ276161) putative regulatory protein [Streptom... 263 1e-69
pir||C83106 conserved hypothetical protein PA4322 [imported] - P... 260 1e-68
pir||S75782 methanol dehydrogenase regulatory protein - Synechoc... 259 2e-68
pir||S74593 MorR protein - Synechocystis sp. (strain PCC 6803) >... 259 2e-68
gb|AAG18829.1| (AE004987) methanol dehydrogenase regulatory prot... 259 3e-68
pir||B70874 probable moxR protein - Mycobacterium tuberculosis (... 256 3e-67
pir||H70121 methanol dehydrogenase regulator (moxR) homolog - Ly... 255 4e-67
emb|CAC12049.1| (AL445065) regulatory protein moxR related prote... 254 7e-67
pir||D75460 MoxR-related protein - Deinococcus radiodurans (stra... 252 4e-66
emb|CAA65298.1| (X96434) moxR [Borrelia burgdorferi] >gi|2689172... 252 5e-66
pir||G83261 conserved hypothetical protein PA3070 [imported] - P... 240 1e-62
pir||G82635 methanol dehydrogenase regulatory protein XF1813 [im... 236 3e-61
pir||H82493 MoxR-related protein VCA0175 [imported] - Vibrio cho... 233 2e-60
pir||H83287 conserved hypothetical protein PA2875 [imported] - P... 232 4e-60
pir||B75496 moxR protein - Deinococcus radiodurans (strain R1) >... 215 5e-55
gb|AAC46196.1| (AF002133) transcriptional regulator [Mycobacteri... 192 4e-48
gb|AAB91544.1| (AF017119) MoxR homolog [Allochromatium vinosum] 183 3e-45
gb|AAB62561.1| (AF006054) MoxR [Mycobacterium tuberculosis] 182 5e-45
pir||S43189 hypothetical protein - Pseudomonas aeruginosa >gi|46... 181 8e-45
dbj|BAA23276.1| (AB004097) ORF4 [Hyphomicrobium methylovorum] 152 4e-36
sp|P30621|MOXR_METEX MOXR PROTEIN (MXAR PROTEIN) >gi|1771259|emb... 148 7e-35
sp|P29901|MOXR_PARDE MOXR PROTEIN >gi|94691|pir||D41377 methanol... 134 2e-30
>pir||D75008 methanol dehydrogenase regulatory protein (moxr-2) PAB1296 -
Pyrococcus abyssi (strain Orsay)
>gi|5459020|emb|CAB50506.1| (AJ248288) methanol
dehydrogenase regulatory protein (moxR-2) [Pyrococcus
abyssi]
Length = 309
Score = 603 bits (1537), Expect = e-171
Identities = 309/309 (100%), Positives = 309/309 (100%)
Query: 1 MNGHEFLTLLKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALG 60
MNGHEFLTLLKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALG
Sbjct: 1 MNGHEFLTLLKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALG 60
Query: 61 LKFSRIQLTPDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLE 120
LKFSRIQLTPDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLE
Sbjct: 61 LKFSRIQLTPDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLE 120
Query: 121 AMQERQVTIEGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEEL 180
AMQERQVTIEGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEEL
Sbjct: 121 AMQERQVTIEGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEEL 180
Query: 181 EMLKRKDKGLFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGA 240
EMLKRKDKGLFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGA
Sbjct: 181 EMLKRKDKGLFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGA 240
Query: 241 SPRAAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVRE 300
SPRAAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVRE
Sbjct: 241 SPRAAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVRE 300
Query: 301 ILNKVEVPV 309
ILNKVEVPV
Sbjct: 301 ILNKVEVPV 309
>pir||G71146 hypothetical protein PH0385 - Pyrococcus horikoshii
>gi|3256777|dbj|BAA29460.1| (AP000002) 312aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 312
Score = 506 bits (1288), Expect = e-142
Identities = 244/309 (78%), Positives = 285/309 (91%)
Query: 1 MNGHEFLTLLKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALG 60
M+G +FL LLK+E+HKAVVGKDDVIELLAIALL+EGHV+IEG+PGVAKTTIAK+FAQ LG
Sbjct: 4 MDGRKFLKLLKEEVHKAVVGKDDVIELLAIALLAEGHVMIEGVPGVAKTTIAKSFAQVLG 63
Query: 61 LKFSRIQLTPDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLE 120
LKFSRIQLTPDL PADI+GTVYYDQ DG WKIKKGPIFANV+LADEINRAQPKTQSALLE
Sbjct: 64 LKFSRIQLTPDLLPADILGTVYYDQSDGLWKIKKGPIFANVVLADEINRAQPKTQSALLE 123
Query: 121 AMQERQVTIEGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEEL 180
AMQERQVTIEGRT+ LE+PF++IATKNP+EFEGVYNLPEAQ+DRFML IK+GYP++EEE+
Sbjct: 124 AMQERQVTIEGRTFPLEKPFMVIATKNPIEFEGVYNLPEAQVDRFMLNIKIGYPTREEEV 183
Query: 181 EMLKRKDKGLFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGA 240
EML++KD+G E R+FSR+QI++MI +RV+ S+EVL YLYEI+N TR D+RL+VGA
Sbjct: 184 EMLRKKDRGELGEVGRIFSREQIVRMINEVKRVKTSEEVLHYLYEIVNETRKDERLIVGA 243
Query: 241 SPRAAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVRE 300
SPRA+EHLLYASKAKAFLEGRDYVIPDD+K LAVPVLAHRLL+KAE+E+EGI GE +VRE
Sbjct: 244 SPRASEHLLYASKAKAFLEGRDYVIPDDVKFLAVPVLAHRLLIKAEHEIEGIKGEDIVRE 303
Query: 301 ILNKVEVPV 309
IL +VEVP+
Sbjct: 304 ILERVEVPI 312
>pir||C75037 methanol dehydrogenase regulatory protein (moxr-3) PAB0848 -
Pyrococcus abyssi (strain Orsay)
>gi|5458705|emb|CAB50192.1| (AJ248287) methanol
dehydrogenase regulatory protein (moxR-3) [Pyrococcus
abyssi]
Length = 314
Score = 328 bits (831), Expect = 7e-89
Identities = 162/300 (54%), Positives = 228/300 (76%), Gaps = 3/300 (1%)
Query: 12 KEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPD 71
+E+ KA+VGKD+V++L+ ++L++GH++IE +PG+AKT +AK+FA+ALGL+F R+Q TPD
Sbjct: 12 EEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQFTPD 71
Query: 72 LFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEG 131
L P+DI+G ++Q ++ KKGP+F N++LADEINRA PKTQSALLEAMQERQVTIEG
Sbjct: 72 LLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTIEG 131
Query: 132 RTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRKDKGLF 191
TY+L RPF++IAT+NP+E EG Y LPEAQLDRF+++++VGYPSKEEE E+LKR+ +
Sbjct: 132 NTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRIERKM 191
Query: 192 S--EAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKR-LLVGASPRAAEHL 248
E V S + I++M V +SD ++EY+ ++ TR DKR + VG SPR + L
Sbjct: 192 DDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRGSLAL 251
Query: 249 LYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEVP 308
L S+A A +EGRDYVIPDD+K++AVP L+HR+++K E I E ++++IL KV VP
Sbjct: 252 LKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDIIKKILEKVPVP 311
>pir||B71126 hypothetical protein PH0776 - Pyrococcus horikoshii
>gi|3257185|dbj|BAA29868.1| (AP000003) 314aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 314
Score = 321 bits (813), Expect = 8e-87
Identities = 157/300 (52%), Positives = 227/300 (75%), Gaps = 3/300 (1%)
Query: 12 KEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPD 71
+E+ KA+VGKD+V++L+ +L++GH++IE +PG+AKT +AK+FA+ALGL+F R+Q TPD
Sbjct: 12 EEVKKAIVGKDNVLKLVLATILADGHILIEDLPGLAKTLMAKSFAKALGLEFKRVQFTPD 71
Query: 72 LFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEG 131
L P+DI+G ++Q ++ KKGP+F N++LADEINRA PKTQSALLEAMQERQVTIEG
Sbjct: 72 LLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQVTIEG 131
Query: 132 RTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRK--DKG 189
TYKL +PF++IAT+NP+E EG Y LPEAQLDRF++++++GYPSK+EE E+L+R+ K
Sbjct: 132 VTYKLPKPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRMGYPSKDEEKEILRRRIERKQ 191
Query: 190 LFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKR-LLVGASPRAAEHL 248
E + V S ++KM V +SD ++EY+ ++ TR DKR + +G SPR + L
Sbjct: 192 DEVEIETVLSPKDVLKMQREVEDVYVSDAIIEYITSLVWATREDKRDIEIGVSPRGSLAL 251
Query: 249 LYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEVP 308
L S+A A +EGRDYVIPDD+K++A+P L+HR+++K E ++ E V+ +IL +V VP
Sbjct: 252 LKLSRAYAAIEGRDYVIPDDVKAVAIPALSHRIILKRELWYTRVSQESVIEKILERVPVP 311
>pir||F71139 hypothetical protein PH0329 - Pyrococcus horikoshii
>gi|3256720|dbj|BAA29403.1| (AP000002) 317aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 317
Score = 302 bits (765), Expect = 4e-81
Identities = 157/297 (52%), Positives = 214/297 (71%), Gaps = 8/297 (2%)
Query: 19 VGKDDVI-ELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPDLFPADI 77
+G +DVI ++LA+AL++ G+++ E PG+ KT +AK FA+ LGLKF RIQ TPDL PADI
Sbjct: 17 IGHEDVIRKVLAVALVN-GNILFEDYPGLGKTLLAKAFAKILGLKFKRIQFTPDLLPADI 75
Query: 78 IGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEGRTYKLE 137
IGT + G +++ KGPIF N++LADEINRA PKTQSALLEAM+ERQVTIEG T+KLE
Sbjct: 76 IGTKVWKPEKGAFEVVKGPIFTNILLADEINRAPPKTQSALLEAMEERQVTIEGETFKLE 135
Query: 138 RPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYP-SKEEELEMLKRK----DKGLFS 192
RPF +IAT+NPLE EG Y LPEAQLDRF++++ +GYP ++E+ELE+LK + S
Sbjct: 136 RPFFIIATQNPLELEGTYPLPEAQLDRFLVRLNIGYPRNEEDELEILKARLRWGKDDPTS 195
Query: 193 EAKRVFSRDQIIKM-IELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAEHLLYA 251
+ + SR+ I+M E+ R V I D++L Y+ ++ R D+R+ G SPR L+
Sbjct: 196 DISPIISREDFIRMQEEVERGVIIHDDILRYIVRLVRRIREDERIEAGPSPRGGLALMKL 255
Query: 252 SKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEVP 308
+KA AF+EGR YVIPDD+K AV LAHR+++K EY +E E ++RE+L +V VP
Sbjct: 256 AKANAFIEGRSYVIPDDVKYFAVEALAHRIVLKPEYSLERGIAEEIIREVLEEVPVP 312
>pir||B75012 methanol dehydrogenase regulatory protein (moxr-1) PAB1276 -
Pyrococcus abyssi (strain Orsay)
>gi|5459050|emb|CAB50536.1| (AJ248288) methanol
dehydrogenase regulatory protein (moxR-1) [Pyrococcus
abyssi]
Length = 317
Score = 293 bits (743), Expect = 1e-78
Identities = 153/302 (50%), Positives = 211/302 (69%), Gaps = 8/302 (2%)
Query: 14 IHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPDLF 73
I + +GK +V+ + A L G+V+ E PG+ KT +AK FA+ LGL + RIQ TPDL
Sbjct: 12 IGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLL 71
Query: 74 PADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEGRT 133
PADIIGT + G ++I KGPIF NV+LADEINRA PKTQSALLEAM+ERQVTIEG T
Sbjct: 72 PADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGET 131
Query: 134 YKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYP-SKEEELEMLKR-----KD 187
++LE+PF +IAT+NPLEFEG Y LPEAQLDRF++++ VGYP S++EE+E+LK KD
Sbjct: 132 FRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKD 191
Query: 188 KGLFSEAKRVFSRDQIIKM-IELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAE 246
+ K V S+++ ++M + V++ D++L Y+ I+ R D+R+ G SPR A
Sbjct: 192 DPTV-DLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPRGAL 250
Query: 247 HLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVE 306
L+ SKA AF+EGRD+VIPDD+K+ + L+HR+++K EY +E +V E +N+V
Sbjct: 251 ALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNEVP 310
Query: 307 VP 308
VP
Sbjct: 311 VP 312
>pir||T35917 probable regulatory protein - Streptomyces coelicolor
>gi|4160330|emb|CAA22801.1| (AL035212) putative
regulatory protein [Streptomyces coelicolor A3(2)]
Length = 332
Score = 290 bits (734), Expect = 2e-77
Identities = 143/299 (47%), Positives = 206/299 (68%), Gaps = 2/299 (0%)
Query: 12 KEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPD 71
+EI +AVVGK D +E + +A+L+ GHV++E +PG+ KT +A++FA LGL F RIQ TPD
Sbjct: 24 REIGRAVVGKPDALEHVMLAVLAGGHVLVEDLPGLGKTLLARSFATTLGLDFRRIQFTPD 83
Query: 72 LFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEG 131
L P+D+ GT YDQ G GP+F +++LADEINR PKTQ+ALLEAM E QVT++G
Sbjct: 84 LLPSDVTGTPLYDQRSGEMVFHPGPVFTHLLLADEINRTPPKTQAALLEAMAESQVTVDG 143
Query: 132 RTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRKDKGLF 191
T L PFL+IAT NP+E+EG Y+LPEAQLDRF L++++GY + EEL ML+ +
Sbjct: 144 ETRPLADPFLVIATANPVEYEGTYSLPEAQLDRFQLRVRMGYLAAREELAMLRARIDRAA 203
Query: 192 SEA--KRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAEHLL 249
EA +R+ D ++ + RV I D++LEY ++ TR ++ +GASPR L+
Sbjct: 204 PEAVLERLAGPDDVVAWRAVVERVEIDDDLLEYAVALVGATRDHPQISIGASPRGGLALV 263
Query: 250 YASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEVP 308
++A+A L+GRDYV+P+D+K LAVP LAHR+ ++ E V ++ + V+REI++ V P
Sbjct: 264 QLARARAVLDGRDYVVPEDVKGLAVPALAHRVSLRPELWVREMSTDDVLREIVDSVGTP 322
>pir||T34964 probable regulatory protein - Streptomyces coelicolor
>gi|5689966|emb|CAB52003.1| (AL109663) putative
regulatory protein [Streptomyces coelicolor A3(2)]
Length = 337
Score = 289 bits (732), Expect = 3e-77
Identities = 146/300 (48%), Positives = 202/300 (66%), Gaps = 1/300 (0%)
Query: 10 LKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLT 69
++ + + GK +V+ L LL+EGH++IE +PGV KT +AK A+++ RIQ T
Sbjct: 12 VRGSVEDVIEGKPEVVRLSLTVLLAEGHLLIEDVPGVGKTMLAKALARSIDCSVRRIQFT 71
Query: 70 PDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTI 129
PDL P+DI G +DQ +++ K G IFA V++ DEINRA PKTQSALLE+M+ERQVTI
Sbjct: 72 PDLLPSDITGVSIWDQQRRDFEFKPGAIFAQVVIGDEINRASPKTQSALLESMEERQVTI 131
Query: 130 EGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLK-RKDK 188
+G+TY+L PF+++AT+NP+E EG Y LPEAQ DRFM ++ +GYPS E EL+ML
Sbjct: 132 DGQTYELPSPFMVVATQNPVEMEGTYPLPEAQRDRFMARVSIGYPSPEAELQMLDVHGGA 191
Query: 189 GLFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAEHL 248
+ + V I+K+IE R V ++D V Y +++ TR L +GASPRA HL
Sbjct: 192 SPLDDLQPVAHAHDILKLIEAVRGVHVADPVRRYAVDLVAATRTHPDLRLGASPRATLHL 251
Query: 249 LYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEVP 308
L A+KA A L GRDY +PDD+++LAV VLAHRLL A+ ++ T E+VV+EIL + VP
Sbjct: 252 LRAAKASAALSGRDYALPDDVQALAVAVLAHRLLPTAQAQLNRRTAEQVVQEILQRTAVP 311
>dbj|BAB04323.1| (AP001509) methanol dehydrogenase regulatory protein [Bacillus
halodurans]
Length = 318
Score = 288 bits (729), Expect = 6e-77
Identities = 139/299 (46%), Positives = 208/299 (69%), Gaps = 1/299 (0%)
Query: 12 KEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPD 71
+ + + VVGK IEL +AL + GHV++E +PGV KT + K A++LG F RIQ TPD
Sbjct: 13 ENVERVVVGKRQEIELSLVALFASGHVLLEDVPGVGKTMLVKAIARSLGADFKRIQFTPD 72
Query: 72 LFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEG 131
L P+D+ G Y+Q ++ + GPI ANV+LADEINR PKTQSALLEA++E VTIEG
Sbjct: 73 LLPSDVTGVSIYNQKTQQFEFRPGPIMANVVLADEINRTSPKTQSALLEALEEGSVTIEG 132
Query: 132 RTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKR-KDKGL 190
++ L +PF ++AT+NP+E+ G Y LPEAQLDRF+ ++++GYP +EEL++LKR + K
Sbjct: 133 KSLVLSKPFFVMATQNPVEYAGTYPLPEAQLDRFLFRLQLGYPKPDEELDVLKRLEKKHP 192
Query: 191 FSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAEHLLY 250
E V +++I++ E + V + D V Y+ EI+NLTR +++ +G SPR + ++
Sbjct: 193 IQELSPVMETEEVIQLQEEIKDVFVEDNVKAYIVEIVNLTRKHQKVELGVSPRGSIAMMK 252
Query: 251 ASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEVPV 309
A++A A ++GRDYVIPDDIK+LA L+HRL++ AE ++ G E ++ ++L + +VPV
Sbjct: 253 AAQAYAMIQGRDYVIPDDIKTLAPFALSHRLILTAEAKMSGTDHEEIIHDVLQQAKVPV 311
>pir||B70947 probable moxR3 protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2827574|emb|CAA16629.1| (AL021646) moxR3
[Mycobacterium tuberculosis]
Length = 320
Score = 285 bits (722), Expect = 4e-76
Identities = 142/298 (47%), Positives = 206/298 (68%), Gaps = 2/298 (0%)
Query: 13 EIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPDL 72
EI + VVGK + L+ A+L+ GHV+IE +PG+ KT IA++FA ALGL F+R+Q TPDL
Sbjct: 18 EIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTRVQFTPDL 77
Query: 73 FPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEGR 132
PAD++G+ YD G ++ + GPIF N++LADEINR PKTQ+ALLEAM E QV+I+G+
Sbjct: 78 LPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQVSIDGQ 137
Query: 133 TYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRK-DKGLF 191
T+KL PF+++AT NP+E+EG Y LPEAQLDRF +++++ Y S+ +E ML+R+ ++G
Sbjct: 138 THKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRRLERGSA 197
Query: 192 S-EAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAEHLLY 250
+V ++ M E +V + ++VL Y+ + N TR ++ VGASPRA L+
Sbjct: 198 DPTVNQVVDCHDLLAMRESVEQVTVHEDVLHYVVSLANATRHHPQVAVGASPRAELDLVQ 257
Query: 251 ASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEVP 308
S+A+A L GRDYVIP+D+K LA +AHR+ ++ E V I G VV E+L ++ VP
Sbjct: 258 LSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSELLRRLPVP 315
>pir||E70792 probable regulatory protein - Mycobacterium tuberculosis (strain
H37RV) >gi|2960116|emb|CAA18014.1| (AL022121) moxR2
[Mycobacterium tuberculosis]
Length = 358
Score = 283 bits (716), Expect = 2e-75
Identities = 144/311 (46%), Positives = 204/311 (65%), Gaps = 4/311 (1%)
Query: 2 NGHEFLTLLKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGL 61
+ + L L+ E+ KAVVG+D VI L IALL GHV++EG+PGVAKT I + + AL L
Sbjct: 47 SARDALLALRAEVAKAVVGQDGVISGLVIALLCRGHVLLEGVPGVAKTLIVRAMSAALQL 106
Query: 62 KFSRIQLTPDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEA 121
+F R+Q TPDL P D+ G++ YD + + GP+F N++LADEINR PKTQ+ALLEA
Sbjct: 107 EFKRVQFTPDLMPGDVTGSLVYDARTAEFVFRPGPVFTNLLLADEINRTPPKTQAALLEA 166
Query: 122 MQERQVTIEGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELE 181
M+ERQV++EG L PF++ AT+NP+E+EG Y LPEAQLDRF+L++ V P+++ E+
Sbjct: 167 MEERQVSVEGEPKPLPNPFIVAATQNPIEYEGTYQLPEAQLDRFLLKLNVTLPARDSEIA 226
Query: 182 MLKRKDKGL----FSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLL 237
+L R G S V ++ E R V +++EVL Y+ +I+ TR L
Sbjct: 227 ILDRHAHGFDPRDLSAINPVAGPAELAAGREAVRHVLVANEVLGYIVDIVGATRSSPALQ 286
Query: 238 VGASPRAAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERV 297
+G SPR A LL +++ A+L GRDYV PDD+K++A P L HR++++ E E+EG T + V
Sbjct: 287 LGVSPRGATALLGTARSWAWLSGRDYVTPDDVKAMARPTLRHRVMLRPEAELEGATPDGV 346
Query: 298 VREILNKVEVP 308
+ IL V VP
Sbjct: 347 LDGILASVPVP 357
>pir||H72289 hypothetical protein TM1132 - Thermotoga maritima (strain MSB8)
>gi|4981679|gb|AAD36208.1|AE001771_1 (AE001771) moxR
protein, putative [Thermotoga maritima]
Length = 305
Score = 282 bits (713), Expect = 5e-75
Identities = 139/295 (47%), Positives = 210/295 (71%), Gaps = 1/295 (0%)
Query: 14 IHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPDLF 73
I K + GK + IE++ ALL++GHV++E +PGV KT +A+ A +LG+ F R+Q TPDL
Sbjct: 9 IEKVIKGKREAIEVVVAALLAKGHVLMEDVPGVGKTMLARALALSLGVDFRRVQFTPDLL 68
Query: 74 PADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEGRT 133
P D+ G YD+ ++ KKGP+F +V+LADEINRA P+TQSALLEAM E QVT++G T
Sbjct: 69 PTDLTGLYIYDRKKEDFVFKKGPVFTDVLLADEINRATPRTQSALLEAMAEGQVTVDGVT 128
Query: 134 YKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRKDK-GLFS 192
++L F +IAT+NP+E+EG + LPEAQLDRFM+ +K+GYP +E E++ML ++K S
Sbjct: 129 HRLSERFFVIATQNPIEYEGTFPLPEAQLDRFMICVKMGYPDEEAEIQMLTSQEKEHPIS 188
Query: 193 EAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAEHLLYAS 252
+ + V + D++ ++ + R V +SDEV +Y+ +I + TR LL+G SPR + L++ S
Sbjct: 189 QLEPVMNPDELSELQKKVRNVFVSDEVKKYIVDIASATRNHPSLLLGMSPRGSIALMHFS 248
Query: 253 KAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEV 307
A AF++GRD+ +PDD+K AV V+ HR++ AE +++ E +VREIL++V+V
Sbjct: 249 MALAFMDGRDFTLPDDVKRAAVYVIPHRVIQSAESKLKREKKEDIVREILDRVKV 303
>pir||D72767 hypothetical protein APE0127 - Aeropyrum pernix (strain K1)
>gi|5103517|dbj|BAA79038.1| (AP000058) 314aa long
hypothetical protein [Aeropyrum pernix]
Length = 314
Score = 281 bits (712), Expect = 6e-75
Identities = 136/304 (44%), Positives = 212/304 (69%), Gaps = 3/304 (0%)
Query: 5 EFLTLLKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFS 64
E L +K+E+ + V+GK+ ++L ++++GH+++EG+PGVAKTT+AK A A GL+FS
Sbjct: 14 EVLARVKREVARFVIGKEREVKLALATMIAKGHLLVEGVPGVAKTTLAKALAGAFGLRFS 73
Query: 65 RIQLTPDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQE 124
RIQ TPD P+D+IGT Y + + ++GP+FANV+LADE+NRA P+TQSA LEAMQE
Sbjct: 74 RIQFTPDTLPSDVIGTHVY--VGNGFVFRRGPVFANVVLADEVNRANPRTQSAFLEAMQE 131
Query: 125 RQVTIEGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLK 184
QVT+ G T++L PF+++AT NP+E EGVY LPEAQLDRFM +I++GYP++ EE+++++
Sbjct: 132 GQVTVWGETHRLPSPFIVLATMNPIELEGVYPLPEAQLDRFMARIRLGYPTRVEEIKIIE 191
Query: 185 RKDKGLFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRA 244
+ D+ + S + + ++ + ARR+ + +++EY+ +I+ TR + + +GASPRA
Sbjct: 192 KGDEVEDLNVEPAASPEDLKRLQDTARRIYVDRKLVEYIADIVRETRRIEEVEIGASPRA 251
Query: 245 AEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNK 304
H+L S+A A + GRD+ PDD+K A L HRL ++ Y + + E +V ++L K
Sbjct: 252 GIHILKLSRALALMSGRDFATPDDVKEAARAALPHRLKLRKVY-ISKHSSEGLVEDVLKK 310
Query: 305 VEVP 308
V P
Sbjct: 311 VPPP 314
>dbj|BAB04450.1| (AP001509) unknown conserved protein [Bacillus halodurans]
Length = 308
Score = 281 bits (712), Expect = 6e-75
Identities = 134/304 (44%), Positives = 209/304 (68%), Gaps = 5/304 (1%)
Query: 10 LKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLT 69
L +++ + ++G+ I LL A L+ GHV++EG+PG+ KT + + A F R+Q T
Sbjct: 4 LLQQMDQVIIGQQKNIRLLLTAFLAGGHVLLEGVPGIGKTKMVRELADLTDGDFKRVQFT 63
Query: 70 PDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTI 129
PD+ P+D+ G V ++ D ++++ KGP+F N++LADEINR P+TQ+ALLEAM+ERQVTI
Sbjct: 64 PDMMPSDVTGNVIFNSKDNDFQMVKGPVFTNLLLADEINRTPPRTQAALLEAMEERQVTI 123
Query: 130 EGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRK--- 186
+G TY+L PF ++AT+NP+E+EG Y LPEAQLDRF+ +++V YPS E EL+++K
Sbjct: 124 QGETYQLPDPFFVVATQNPIEYEGTYPLPEAQLDRFLFKLEVTYPSLEAELQIVKGHVPF 183
Query: 187 --DKGLFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRA 244
++G ++ + FS ++ K+ + ++V + D ++EY+ II TR D+R++ GASPRA
Sbjct: 184 FVEQGNETDGRSAFSLTELRKLRQQLQQVVVEDSLMEYMVTIIRKTREDQRVMNGASPRA 243
Query: 245 AEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNK 304
L+ A++A A L+GR +V PDDIK++ VP L HRL + + E+EG T + ++E L
Sbjct: 244 GIALMMAARAWALLDGRQFVTPDDIKTITVPALRHRLQLTPQVELEGETSDHFIQETLAS 303
Query: 305 VEVP 308
V VP
Sbjct: 304 VPVP 307
>pir||F72606 probable methanol dehydrogenase regulator APE1317 - Aeropyrum
pernix (strain K1) >gi|5104994|dbj|BAA80308.1|
(AP000061) 306aa long hypothetical methanol
dehydrogenase regulator [Aeropyrum pernix]
Length = 306
Score = 281 bits (711), Expect = 8e-75
Identities = 137/299 (45%), Positives = 201/299 (66%)
Query: 10 LKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLT 69
+ +E+ K +VGK+ I L+ AL + GHV++EG+PGVAKTT+A+ A+A GL+FSRIQ T
Sbjct: 8 ISEEVSKVIVGKEREIRLVLAALAARGHVLLEGVPGVAKTTMARAIARATGLRFSRIQFT 67
Query: 70 PDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTI 129
PD+ P+D+IGT+ YDQ G + ++GP+FANV+LADE+NRA P+TQSA LEAMQE QVT+
Sbjct: 68 PDMLPSDVIGTMVYDQRTGEFVFRRGPVFANVVLADEVNRANPRTQSAFLEAMQEGQVTV 127
Query: 130 EGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRKDKG 189
G T++L PF+++AT NP+E EGVY LPEAQLDRFM ++ VG+PS EE +E++++
Sbjct: 128 WGETHRLPSPFIVLATMNPIELEGVYPLPEAQLDRFMARVVVGHPSLEELVEIMEKYRSI 187
Query: 190 LFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAEHLL 249
+ V + I+ E +V + + Y+ I+ T + +G SPRAA ++
Sbjct: 188 TEFPVEPVARPEDIVAAQEAVWKVHVDKNIKLYIARIVEETHKHPGVSLGGSPRAALSIM 247
Query: 250 YASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEVP 308
++ A L+G YV PD +K A L HRL++ E ++EG+ E VV ++L+ VE P
Sbjct: 248 MLARGLALLDGLGYVTPDHVKEAARAALPHRLILTTEAKLEGLKPESVVEDVLSSVETP 306
>emb|CAB90929.1| (AL355774) putative regulatory protein [Streptomyces coelicolor
A3(2)]
Length = 329
Score = 277 bits (701), Expect = 1e-73
Identities = 141/313 (45%), Positives = 199/313 (63%), Gaps = 6/313 (1%)
Query: 2 NGHEFLTLLKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGL 61
N L L+ EI KAVVG+D + L +ALL GHV++EG+PGVAKT + + A A L
Sbjct: 16 NARAALEALRAEIAKAVVGQDAAVTGLVVALLCRGHVLLEGVPGVAKTLLVRTLAAATEL 75
Query: 62 KFSRIQLTPDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEA 121
R+Q TPDL P+D+ G++ YD + + GP+F N++LADEINR PKTQS+LLEA
Sbjct: 76 DTKRVQFTPDLMPSDVTGSLVYDARTTEFSFQPGPVFTNLLLADEINRTPPKTQSSLLEA 135
Query: 122 MQERQVTIEGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELE 181
M+ERQVT++G L PFL+ AT+NP+E+EG Y LPEAQLDRF+L++ V P++++E++
Sbjct: 136 MEERQVTVDGTPRLLPEPFLVAATQNPVEYEGTYPLPEAQLDRFLLKLTVPLPTRQDEID 195
Query: 182 MLKRKDKGLFSEAKRVFSRDQIIKMIEL------ARRVRISDEVLEYLYEIINLTRVDKR 235
+L R G R + +L A + +S E+ Y+ +I TR
Sbjct: 196 VLTRHAAGFNPRDLRAAGVRPVASAADLEAARAEAAKTTVSPEITAYVVDICRATRESPS 255
Query: 236 LLVGASPRAAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGE 295
L +G SPR A LL ++A A+L GRDYV PDD+K+LA+P L HR+ ++ E E+EG+T +
Sbjct: 256 LTLGVSPRGATALLSTARAWAWLTGRDYVTPDDVKALALPTLRHRVQLRPEAEMEGVTAD 315
Query: 296 RVVREILNKVEVP 308
V+ IL V VP
Sbjct: 316 SVINAILAHVPVP 328
>pir||C69791 methanol dehydrogenase regulation homolog yeaC - Bacillus subtilis
>gi|1708641|gb|AAB62308.1| (U51115) YeaC [Bacillus
subtilis] >gi|2632946|emb|CAB12452.1| (Z99107) similar
to methanol dehydrogenase regulation [Bacillus subtilis]
Length = 320
Score = 271 bits (686), Expect = 7e-72
Identities = 136/299 (45%), Positives = 201/299 (66%), Gaps = 1/299 (0%)
Query: 12 KEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPD 71
+ I++ +VGK D+ L ALL++GHV++E +PGV KT + + A+++G F RIQ TPD
Sbjct: 16 EHINRVMVGKRDIAILSLAALLAKGHVLLEDVPGVGKTMMVRALAKSIGADFKRIQFTPD 75
Query: 72 LFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEG 131
L P+D+ G Y+ ++ + GPI N++LADEINR PKTQSALLEAM+E VT++G
Sbjct: 76 LLPSDVTGVSIYNAKTMEFEYRPGPIMGNIVLADEINRTSPKTQSALLEAMEEGSVTVDG 135
Query: 132 RTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRKDKGLF 191
T +L PF ++AT+NP+E+EG Y LPEAQLDRF+ ++++GYPS EEL++L ++K
Sbjct: 136 HTMQLADPFFVMATQNPVEYEGTYPLPEAQLDRFLFKLRMGYPSFNEELDVLSLQEKSHP 195
Query: 192 SEA-KRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAEHLLY 250
E + V +++ I + + VR D + EY+ EI+ TR + +G SPR + L+
Sbjct: 196 IETLEPVIAKEDFIFLQREVQNVRADDSIKEYIVEIVQKTRQHPSVQLGVSPRGSIALMK 255
Query: 251 ASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEVPV 309
A++A A L RDYVIPDDI+ LA L HR+++ E + EGI E +VREI++ V+VPV
Sbjct: 256 AAQAYALLHHRDYVIPDDIQYLAPFTLPHRMMLHPEAKFEGIQAEAIVREIMSAVKVPV 314
>gi|11500001 methanol dehydrogenase regulatory protein (moxR) [Archaeoglobus
fulgidus] >gi|7428883|pir||B69553 methanol dehydrogenase
regulatory protein (moxR) homolog - Archaeoglobus
fulgidus >gi|2650675|gb|AAB91247.1| (AE001108) methanol
dehydrogenase regulatory protein (moxR) [Archaeoglobus
fulgidus]
Length = 324
Score = 268 bits (678), Expect = 6e-71
Identities = 136/302 (45%), Positives = 202/302 (66%), Gaps = 7/302 (2%)
Query: 12 KEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPD 71
K + VG +++E + A L+ G+++ E PG+ KT +AK FA+ +G + R+Q TPD
Sbjct: 18 KAVCDVYVGDKNLVEKMLAAALTNGNILFEDYPGLGKTLLAKVFARVIGADYRRVQFTPD 77
Query: 72 LFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEG 131
L P+DIIG + ++ KGPIF NV+LADEINR+ PKTQ+ALLEAM+E+Q+T+EG
Sbjct: 78 LLPSDIIGVKIWR--GDRFEFVKGPIFTNVLLADEINRSPPKTQAALLEAMEEKQITVEG 135
Query: 132 RTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYP-SKEEELEMLKR----K 186
T+ L PF ++AT+NP+E EG Y LPEAQ+DRFML+++ GYP S EEE+E+L+R +
Sbjct: 136 ETFSLSMPFFVLATQNPIEQEGTYPLPEAQMDRFMLRMRPGYPESIEEEMEILRRRISWR 195
Query: 187 DKGLFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAE 246
+ + V S + ++ + V + +L+Y+ E++ TR + + +G+SPR
Sbjct: 196 KDDPTEDVEPVVSLETFRRIQDAVEAVYVDKSILKYISELVRATREHELVELGSSPRGGL 255
Query: 247 HLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVE 306
LL ++A A ++GRD+VIPDD+K +AV LAHR+++K EY VEG+ E VV EILN V
Sbjct: 256 ALLKLARALAVMDGRDFVIPDDVKRVAVEALAHRVILKFEYAVEGLRAEEVVEEILNSVR 315
Query: 307 VP 308
VP
Sbjct: 316 VP 317
>pir||H70321 conserved hypothetical protein aq_240 - Aquifex aeolicus
>gi|2982960|gb|AAC06575.1| (AE000680) hypothetical
protein [Aquifex aeolicus]
Length = 300
Score = 264 bits (668), Expect = 9e-70
Identities = 131/303 (43%), Positives = 200/303 (65%), Gaps = 6/303 (1%)
Query: 7 LTLLKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRI 66
+ L+ E+ K + GK++VI+ + LLS GH++IE +PG KTT+A A+ LGL FSRI
Sbjct: 3 INLIISEVSKVIKGKEEVIKNSLVCLLSGGHLLIEDVPGTGKTTLALALARVLGLSFSRI 62
Query: 67 QLTPDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQ 126
Q T DL P+DI G ++Q ++ KKGPIF+NV+LADEINR PK QSALLEAM E+Q
Sbjct: 63 QFTSDLLPSDITGVSVFNQKTREFEFKKGPIFSNVVLADEINRGTPKVQSALLEAMAEKQ 122
Query: 127 VTIEGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKR- 185
V+++G TYKL PF +IAT+NP+E+ G Y LPEAQLDRF ++I +GYPS+E+E+++++
Sbjct: 123 VSVDGNTYKLPEPFFVIATQNPIEYYGTYPLPEAQLDRFTMKISMGYPSEEDEVQIVQGI 182
Query: 186 KDKGLFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAA 245
S + S +++I+ + + + +S EV ++ I N R +++G S R
Sbjct: 183 NPMEKVSSLNVLSSPEEVIRTVNEVKEIYVSPEVARFIVNIGNEVRNHPSVILGVSTRGL 242
Query: 246 EHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKV 305
HL AS+A A+ RD+V+P+D+ L V+ HR+ V+ EG+ E V++E++++V
Sbjct: 243 IHLANASRALAYFRERDFVVPEDVLDLLKYVIPHRIKVR-----EGVKAEAVLKEVISRV 297
Query: 306 EVP 308
+P
Sbjct: 298 PIP 300
>emb|CAB98184.1| (AJ276161) putative regulatory protein [Streptomyces sparsogenes]
Length = 335
Score = 263 bits (666), Expect = 1e-69
Identities = 130/300 (43%), Positives = 194/300 (64%), Gaps = 1/300 (0%)
Query: 10 LKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLT 69
L I + V GK D +EL + L SEGH++IE +PG KTT+A+ A +L + R+Q T
Sbjct: 30 LGDNIERVVKGKRDTVELALVCLFSEGHLLIEDVPGTGKTTLARCLAASLEADWHRVQFT 89
Query: 70 PDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTI 129
PDL P+DI G Y Q G ++ GP+FAN++L DEINRA PKTQSA+LE M+ERQVT
Sbjct: 90 PDLLPSDITGVTVYRQNTGTFEFLPGPVFANIVLGDEINRASPKTQSAMLEVMEERQVTA 149
Query: 130 EGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLK-RKDK 188
+G T+ + RPF++IAT+N ++ G Y LPEAQLDRF++Q+ +GYP E+ +L +
Sbjct: 150 DGSTHPVPRPFMVIATQNSVDMGGTYPLPEAQLDRFLMQVTLGYPDHASEVAVLSGAASQ 209
Query: 189 GLFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAEHL 248
+ + + I + I++AR+++++ ++ +YL ++ TR + +GASPR + L
Sbjct: 210 TSIEQLPTIATGRHIAEFIQVARQIQVAPQLYDYLVRVVAATRSLPEVRLGASPRGSVAL 269
Query: 249 LYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEVP 308
L A + +A +GR Y +P+D+K+LA PVLAHRL++ E E+ G G V+ E L V VP
Sbjct: 270 LRAVRVRAASQGRTYALPEDVKALAGPVLAHRLILTPEAELSGRCGADVIAEALATVPVP 329
>pir||C83106 conserved hypothetical protein PA4322 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950546|gb|AAG07710.1|AE004848_9 (AE004848)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 335
Score = 260 bits (658), Expect = 1e-68
Identities = 127/305 (41%), Positives = 206/305 (66%), Gaps = 6/305 (1%)
Query: 10 LKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLT 69
L+ E+ KA++G+ VI+ + ALL+ GHV++EG+PG+ KT + + A+ F+RIQ T
Sbjct: 29 LRTELQKALIGQGAVIDDVLTALLAGGHVLVEGVPGLGKTLLVRALARCFDGGFARIQFT 88
Query: 70 PDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTI 129
PDL P+D+ G YD +K++KGP+F +++LADEINRA KTQ+ALLE MQERQVT+
Sbjct: 89 PDLMPSDVTGHAVYDLASEQFKLRKGPVFTHLLLADEINRAPAKTQAALLEVMQERQVTL 148
Query: 130 EGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRKDKG 189
EGR + +PF+++AT+NP+E EG Y LPEA+LDRFML++++ YP++ EE ++++ +
Sbjct: 149 EGRALPVPQPFMVLATQNPIEQEGTYPLPEAELDRFMLKLRIDYPAEAEEQTLVRQVTRS 208
Query: 190 LFSEAKRVFSRDQIIK------MIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPR 243
S+ V + ++K + +A + I D+VL+Y + TR L +GA PR
Sbjct: 209 ARSDMLDVANLRPLLKDKDVLALQRIASDLPIDDQVLDYAVRLARTTRNWPGLALGAGPR 268
Query: 244 AAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILN 303
A+ L+ +A+A L G ++V+PDDIK A+ VL HR+ + E ++EG++ ++V++++L+
Sbjct: 269 ASIALVRCGRARALLRGGEFVVPDDIKGCALAVLRHRVRLSPELDIEGLSVDQVLQQLLD 328
Query: 304 KVEVP 308
+V P
Sbjct: 329 QVPAP 333
>pir||S75782 methanol dehydrogenase regulatory protein - Synechocystis sp.
(strain PCC 6803) >gi|1001272|dbj|BAA10517.1| (D64003)
MoxR [Synechocystis sp.]
Length = 303
Score = 259 bits (656), Expect = 2e-68
Identities = 127/306 (41%), Positives = 204/306 (66%), Gaps = 8/306 (2%)
Query: 5 EFLTLLKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFS 64
E +++L + + + +VGKD+ I L+ +ALLS GH ++E +PGV KT +AK+ A+++ KF
Sbjct: 3 EQISVLTQNLSQTIVGKDEAIRLVLVALLSGGHALLEDVPGVGKTLLAKSLARSINGKFQ 62
Query: 65 RIQLTPDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQE 124
R+Q TPDL P DI GT ++ ++ GP FAN++LADEINRA P+TQ+ALLE M+E
Sbjct: 63 RVQCTPDLLPTDITGTNIWNPSSREFEFLPGPAFANILLADEINRATPRTQAALLEVMEE 122
Query: 125 RQVTIEGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLK 184
+QVT++G T + PF +IAT+NP+E++G + LPEAQLDRF L + +GYPS+ EEL+ML+
Sbjct: 123 KQVTVDGETRLVPHPFFVIATQNPIEYQGTFPLPEAQLDRFALSLSLGYPSEAEELKMLQ 182
Query: 185 RKDKG---LFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGAS 241
R+ + + S +++ + + R+V++++++ +YL ++ +R D+ + +G S
Sbjct: 183 RQQNPEAIAVGDLESCISLEEVEALQKAVRQVKLTEDLQQYLLRLVRASRTDEDVTLGVS 242
Query: 242 PRAAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREI 301
PR L A++A AFLE RDY I DD+K +A VLAHRL+ G + +++ +
Sbjct: 243 PRGTTALQRATQAFAFLEERDYAIDDDVKFVAPHVLAHRLI-----PASGKDPKAILQRL 297
Query: 302 LNKVEV 307
L+ V +
Sbjct: 298 LDSVPI 303
>pir||S74593 MorR protein - Synechocystis sp. (strain PCC 6803)
>gi|1651818|dbj|BAA16745.1| (D90900) MorR protein
[Synechocystis sp.]
Length = 314
Score = 259 bits (656), Expect = 2e-68
Identities = 127/305 (41%), Positives = 203/305 (65%), Gaps = 6/305 (1%)
Query: 10 LKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLT 69
L+ + +VG+ +I+ L +ALL+ GHVIIEG+PG KT + K AQ++ +F R+QLT
Sbjct: 9 LRGHLEAFLVGQPHLIQELLVALLAGGHVIIEGVPGTGKTLLVKLLAQSIQSQFRRVQLT 68
Query: 70 PDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTI 129
PD+ P+D++G +D + +K+GP+F ++LADEINR PKTQSALLEAM+E+QVT+
Sbjct: 69 PDMLPSDMVGVNVFDFNQQAFSLKQGPVFTEILLADEINRTPPKTQSALLEAMEEQQVTL 128
Query: 130 EGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRKDKG 189
+G TY L F ++AT+NPLEFEG Y LPEAQLDRF+ ++ V YP +ML +G
Sbjct: 129 DGHTYALPPLFWVVATQNPLEFEGTYPLPEAQLDRFLFKLVVDYPPPAAAKQMLVNFQQG 188
Query: 190 LFSEAK------RVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPR 243
++ + + + ++I+ + + +++L+YL ++ TR +L+GASPR
Sbjct: 189 FHAQRQDLEQLTAIATVEEILASRRSVEDIAVDEKLLDYLLALVEKTRYHPDILIGASPR 248
Query: 244 AAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILN 303
A+ L A+KA A+L G++Y++PD++K++A P+L HRL+++ E +++GI + V+ IL
Sbjct: 249 ASLRWLQAAKADAWLNGQEYLLPDNLKTVAPPLLRHRLILRPEAQLDGIGIDEVITAILE 308
Query: 304 KVEVP 308
+ VP
Sbjct: 309 QTPVP 313
>gb|AAG18829.1| (AE004987) methanol dehydrogenase regulatory protein; MoxR
[Halobacterium sp. NRC-1]
Length = 318
Score = 259 bits (655), Expect = 3e-68
Identities = 129/298 (43%), Positives = 194/298 (64%), Gaps = 2/298 (0%)
Query: 13 EIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPDL 72
E+ AV+ + +E + + L++GHV++E +PG KT A++ A ALGL+FSR+Q TPDL
Sbjct: 16 EVAAAVIADREFLETVLVGFLADGHVLLEDVPGTGKTLTARSVATALGLEFSRVQFTPDL 75
Query: 73 FPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEGR 132
P D++GT +++ ++ + GP+FANV+LADEINRA PKTQ+ALLEAM+E QVTI+G
Sbjct: 76 LPTDVLGTHVFNERSREFEFRPGPVFANVVLADEINRAPPKTQAALLEAMEEGQVTIDGE 135
Query: 133 TYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEML-KRKDKGLF 191
T L PF +IAT+NP++ EG + LPEAQLDRF++ +GYP E E+L +R +
Sbjct: 136 TMALPEPFFVIATQNPVDQEGTFPLPEAQLDRFVVSAAIGYPDAAGERELLARRASRDAR 195
Query: 192 SEAKRVFSRDQIIKMIELARR-VRISDEVLEYLYEIINLTRVDKRLLVGASPRAAEHLLY 250
S D+ ++ + A VR+ ++ EY+ + TR R+ VG SPR + L
Sbjct: 196 SPTVDAVLDDERVRALRRASEDVRVGSDLREYMVAVARATREHPRVEVGVSPRGTQRLFE 255
Query: 251 ASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEVP 308
A++A+A + GR+YV+P D+K LA VLAHRL++ + VE + +V +L++V VP
Sbjct: 256 AARARAVVAGREYVVPADVKGLAGSVLAHRLVLTPDAAVENVAKGGIVEGVLDEVPVP 313
>pir||B70874 probable moxR protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2791413|emb|CAA16007.1| (AL021184) moxR
[Mycobacterium tuberculosis]
Length = 377
Score = 256 bits (646), Expect = 3e-67
Identities = 134/305 (43%), Positives = 198/305 (63%), Gaps = 10/305 (3%)
Query: 13 EIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPDL 72
E+ + +VG+D ++E + + LLS+GHV++EG+PGVAKT + FA+ +G FSRIQ TPDL
Sbjct: 49 EVKRIIVGQDQLVERMLVGLLSKGHVLLEGVPGVAKTLAVETFARVVGGTFSRIQFTPDL 108
Query: 73 FPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEGR 132
P DIIGT Y Q + + GP+ AN +LADEINRA K QSALLE MQER V+I GR
Sbjct: 109 VPTDIIGTRIYRQGREEFDTELGPVVANFLLADEINRAPAKVQSALLEVMQERHVSIGGR 168
Query: 133 TYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRKDKGLFS 192
T+ + PFL++AT+NP+E EGVY LPEAQ DRF+ +I VGYPS EEE E++ R
Sbjct: 169 TFPMPSPFLVMATQNPIEHEGVYPLPEAQRDRFLFKINVGYPSPEEEREIIYRMGV-TPP 227
Query: 193 EAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRL---------LVGASPR 243
+AK++ S ++++ E+A + +++Y+ ++ TR ++L GASPR
Sbjct: 228 QAKQILSTGDLLRLQEIAANNFVHHALVDYVVRVVFATRKPEQLGMNDVKSWVAFGASPR 287
Query: 244 AAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILN 303
A+ ++ A+++ A + GRDYVIP D+ + VL HRL++ + + I+ E V+ +L
Sbjct: 288 ASLGIIAAARSLALVRGRDYVIPQDVIEVIPDVLRHRLVLTYDALADEISPEIVINRVLQ 347
Query: 304 KVEVP 308
V +P
Sbjct: 348 TVALP 352
>pir||H70121 methanol dehydrogenase regulator (moxR) homolog - Lyme disease
spirochete >gi|2688061|gb|AAC66559.1| (AE001128)
methanol dehydrogenase regulator (moxR) [Borrelia
burgdorferi]
Length = 337
Score = 255 bits (645), Expect = 4e-67
Identities = 130/323 (40%), Positives = 207/323 (63%), Gaps = 21/323 (6%)
Query: 2 NGHEFLTLLKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGL 61
N + ++E+ V+G+ ++I+ + + LL++GHV++EG+PG+AKT + + L L
Sbjct: 20 NALHLINKFRREVATRVLGQKEMIDAILMGLLTDGHVLLEGVPGLAKTLAIQTVSDVLDL 79
Query: 62 KFSRIQLTPDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEA 121
+F RIQ TPDL P+D+ G + Y G +K++KGP+F+NVILADEINRA K QSALLEA
Sbjct: 80 EFKRIQFTPDLLPSDLTGNMVYKSATGTFKVRKGPVFSNVILADEINRAPAKVQSALLEA 139
Query: 122 MQERQVTIEGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELE 181
M ERQVT+ T++L PF ++AT+NP+E EG YNLPE+QLDRF+L++ V YPS ++E+
Sbjct: 140 MGERQVTLGDETHRLPDPFFVLATQNPIEQEGTYNLPESQLDRFLLKVNVHYPSVQDEVR 199
Query: 182 MLKRKDKGLFS--------EAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTR-- 231
+LK +FS + +V + + + RV++ D+++ Y+ +I+ +R
Sbjct: 200 LLK-----IFSVDGRLENIKVAKVMNAYSLADIKRTVGRVKVDDKIMLYIVTLISASRER 254
Query: 232 ------VDKRLLVGASPRAAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKA 285
K + GASPRA+ LL ++ A EGR +V+P+D+K++A VL HR+
Sbjct: 255 DKKTYPFAKYIEFGASPRASLSLLKCARVNALYEGRIFVLPEDVKAVAYSVLRHRITPSY 314
Query: 286 EYEVEGITGERVVREILNKVEVP 308
E EVE ++ + ++R +L+ V +P
Sbjct: 315 EAEVEEMSIDDIIRMLLSAVALP 337
>emb|CAC12049.1| (AL445065) regulatory protein moxR related protein [Thermoplasma
acidophilum]
Length = 319
Score = 254 bits (643), Expect = 7e-67
Identities = 129/304 (42%), Positives = 198/304 (64%), Gaps = 7/304 (2%)
Query: 10 LKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLT 69
+++ I K V+G ++ + IALL+ H+++EG+PG+AKT +A FA+ +KF RIQ T
Sbjct: 17 IEESIGKRVIGSRRIVRFMFIALLTGNHILMEGVPGLAKTMLANEFARHTRMKFRRIQFT 76
Query: 70 PDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTI 129
PD+ P+D+ GT+ ++ + K+GPIFANVILADEINR PK QSALLEAM+E QVTI
Sbjct: 77 PDMLPSDVTGTIMFNIESRKMEFKEGPIFANVILADEINRTPPKVQSALLEAMEETQVTI 136
Query: 130 EGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRKDKG 189
G T+ L +PF +IAT+NP+E EG + L EA +DRF+ + + YPS+E+EL +L G
Sbjct: 137 GGETHSLPKPFFVIATQNPIEQEGTFPLAEALMDRFLFRYYLEYPSREDELNIL--NSIG 194
Query: 190 LFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAEHLL 249
+ + V D+II+ V IS+E+ +YL +++ TR + + +GASPR +
Sbjct: 195 KYDDPSLVLMPDEIIEFRSQVDNVYISEEIKQYLVDLMRRTRENDLVYLGASPRTTAKYM 254
Query: 250 YASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVE-----GITGERVVREILNK 304
A++A A + GR YVIP+DI +A +L HRL++K E ++ + +R++ +L++
Sbjct: 255 KAARANALISGRSYVIPEDITFMAFEILNHRLILKPEAIMDETDDPKLIVKRIIDRVLSE 314
Query: 305 VEVP 308
V VP
Sbjct: 315 VPVP 318
>pir||D75460 MoxR-related protein - Deinococcus radiodurans (strain R1)
>gi|6458637|gb|AAF10492.1|AE001944_3 (AE001944)
MoxR-related protein [Deinococcus radiodurans]
Length = 354
Score = 252 bits (637), Expect = 4e-66
Identities = 130/297 (43%), Positives = 193/297 (64%), Gaps = 1/297 (0%)
Query: 14 IHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPDLF 73
+ + +VGK+DV L A+L+ GHV++E PG KT +A+ A +LGL F R+Q TPDL
Sbjct: 28 VARVLVGKEDVTRLALAAILAGGHVLLEDAPGTGKTVLARALAASLGLDFRRVQFTPDLL 87
Query: 74 PADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEGRT 133
P+D+ G + G ++ GPIF ++LADEINRA PKTQSALLEAM E QV+ G T
Sbjct: 88 PSDVTGVSVFRPATGTFEFVPGPIFTGILLADEINRATPKTQSALLEAMGEGQVSESGVT 147
Query: 134 YKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKR-KDKGLFS 192
++L +PF++IAT+NP+E EG Y LPEAQLDRF+L++ VGYPS E+E+EML R +++
Sbjct: 148 HRLPQPFVVIATQNPVEHEGTYRLPEAQLDRFLLRLSVGYPSLEQEVEMLARLQERHPLQ 207
Query: 193 EAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAEHLLYAS 252
+ + V + ++ ++V +S +V YL + +R ++ +G PRA+ L +
Sbjct: 208 DLRAVAAPADLLAAQAQVQQVTVSSDVRRYLAALAARSRQHPQVTLGGGPRASLALQGVA 267
Query: 253 KAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEVPV 309
+A A+ +GR +V PDD++ A VLAHRL + E ++G++ VVRE+L VPV
Sbjct: 268 QALAWTQGRTFVTPDDVQQAAPGVLAHRLSLGIEARMQGLSAADVVREVLAAEPVPV 324
>emb|CAA65298.1| (X96434) moxR [Borrelia burgdorferi] >gi|2689172|emb|CAA06007.1|
(AJ003222) moxR [Borrelia burgdorferi]
Length = 329
Score = 252 bits (636), Expect = 5e-66
Identities = 130/322 (40%), Positives = 204/322 (62%), Gaps = 20/322 (6%)
Query: 2 NGHEFLTLLKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGL 61
N + ++E+ V+G+ ++I+ + + LL++GHV++EG+PG+AKT + + L L
Sbjct: 13 NALHLINKFRREVATRVLGQKEMIDAILMGLLTDGHVLLEGVPGLAKTLAIQTVSDVLDL 72
Query: 62 KFSRIQLTPDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEA 121
+F RIQ TPDL P+D+ G + Y G +K++KGP+F+NVILADEINRA K QSALLEA
Sbjct: 73 EFKRIQFTPDLLPSDLTGNMVYKSATGTFKVRKGPVFSNVILADEINRAPAKVQSALLEA 132
Query: 122 MQERQVTIEGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELE 181
M ERQVT+ T++L PF ++AT+NP+E EG YNLPE+QLDRF+L++ V YPS ++E+
Sbjct: 133 MGERQVTLGDETHRLPDPFFVLATQNPIEQEGTYNLPESQLDRFLLKVNVHYPSVQDEVR 192
Query: 182 MLKRKDKGLFS--------EAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVD 233
+LK +FS + +V + + + RV++ D+++ Y I D
Sbjct: 193 LLK-----IFSVDGRLENIKVAKVMNAYSLADIKRTVGRVKVDDKIMLICYFISASRERD 247
Query: 234 KR-------LLVGASPRAAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAE 286
K+ + GASPRA+ LL ++ A EGR +V+P+D+K++A VL HR+ E
Sbjct: 248 KKTYPFAKYIEFGASPRASLSLLKCARVNALYEGRIFVLPEDVKAVAYSVLRHRITPSYE 307
Query: 287 YEVEGITGERVVREILNKVEVP 308
EVE ++ + ++R +L+ V +P
Sbjct: 308 AEVEEMSIDDIIRMLLSAVALP 329
>pir||G83261 conserved hypothetical protein PA3070 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949177|gb|AAG06458.1|AE004731_6 (AE004731)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 326
Score = 240 bits (607), Expect = 1e-62
Identities = 134/309 (43%), Positives = 199/309 (64%), Gaps = 11/309 (3%)
Query: 10 LKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLT 69
LK + ++G++ +++ L IALL++GH+++EG PG+AKT K+ A+ L +F RIQ T
Sbjct: 17 LKGYLSSQILGQEKLVDRLLIALLADGHLLVEGAPGLAKTKAIKDLAEGLEAEFHRIQFT 76
Query: 70 PDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTI 129
PDL PADI GT Y G + ++GPIF +++LADEINRA K QSALLEAM ERQV++
Sbjct: 77 PDLLPADITGTEIYRPETGTFVFQQGPIFHHLVLADEINRAPAKVQSALLEAMAERQVSV 136
Query: 130 EGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKR-KDK 188
TY L + FL++AT+NP+E EG Y LPEAQLDRF++ +K+GYP E +L++ + +
Sbjct: 137 GRSTYDLPQLFLVMATQNPIEQEGTYPLPEAQLDRFLMHVKIGYPEASVERRILQQARGE 196
Query: 189 GLFSEAK--RVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKR--------LLV 238
L EA+ R +++ I + + ++D V EYL ++I TR + +
Sbjct: 197 ALNGEARPERRVTQETIFAARQEILGLYMADAVEEYLVQLIMATRTPAKHDAELAEWISY 256
Query: 239 GASPRAAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVV 298
GASPR + L ++A A+L GRD+V P+DI+++ VL HRL++ E E GI +RVV
Sbjct: 257 GASPRGSIALDRCARAHAWLGGRDFVSPEDIQAVLFDVLRHRLILTFEAEAAGIDQDRVV 316
Query: 299 REILNKVEV 307
+ IL+ V V
Sbjct: 317 QRILDVVAV 325
>pir||G82635 methanol dehydrogenase regulatory protein XF1813 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9106890|gb|AAF84619.1|AE004002_9 (AE004002) methanol
dehydrogenase regulatory protein [Xylella fastidiosa]
Length = 317
Score = 236 bits (595), Expect = 3e-61
Identities = 123/298 (41%), Positives = 190/298 (63%), Gaps = 4/298 (1%)
Query: 11 KKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTP 70
+ +++ ++GK+ + L +ALLS GH+++E +PG+ KTT+A A +LGL F R+Q T
Sbjct: 22 QNQVNTLLLGKEQEVRLAFVALLSGGHLLLEDLPGLGKTTLAHALASSLGLTFRRVQFTS 81
Query: 71 DLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIE 130
DL PAD++G Y+ ++ GP+F +V+LADEINRA P+TQSALLEAM E+QVT++
Sbjct: 82 DLLPADVLGISVYNTQTQQFEFHPGPVFTHVLLADEINRAPPRTQSALLEAMAEQQVTLD 141
Query: 131 GRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRKD-KG 189
G T L PF +IAT+NP++ G + LP++QLDRF+L++ +GYP+ E E +L D +
Sbjct: 142 GITRSLSDPFFVIATQNPVDLYGTFPLPDSQLDRFLLRLSLGYPNAEAERTLLSGMDRRE 201
Query: 190 LFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAEHLL 249
L + + +I + + V +SD ++EY+ ++ +R + VG SPRA LL
Sbjct: 202 LLTHTLPRLTEADVILLRKTVLGVHVSDALIEYVQALLLRSRQQSGVRVGLSPRAGIALL 261
Query: 250 YASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEV 307
A+KA A L GR++V+P+DI+ L V V HRL+ +AE TG + + +L V V
Sbjct: 262 RAAKAYALLSGREHVLPEDIQELFVSVAGHRLVPEAE---TSSTGAALAQTLLYTVPV 316
>pir||H82493 MoxR-related protein VCA0175 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9657565|gb|AAF96088.1| (AE004357)
MoxR-related protein [Vibrio cholerae]
Length = 318
Score = 233 bits (589), Expect = 2e-60
Identities = 124/307 (40%), Positives = 194/307 (62%), Gaps = 11/307 (3%)
Query: 10 LKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLT 69
L+ +++ V+G+ D I L IALL++GH+++EG PG+AKT K+ A + F RIQ T
Sbjct: 9 LQHYLNQQVIGQTDFINQLLIALLADGHILVEGPPGLAKTRAVKSLADCIEGDFHRIQFT 68
Query: 70 PDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTI 129
PDL PAD+ G+ Y G + + GPIF ++LADEINRA K Q+A+LEAM E+Q++
Sbjct: 69 PDLLPADLTGSDVYRPETGEFVFQSGPIFNALVLADEINRAPAKVQAAMLEAMAEKQISA 128
Query: 130 EGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEML---KRK 186
+TY+L FL++AT+NP+E EG Y LPEAQLDRF+L ++V YP+ E+EL +L + +
Sbjct: 129 GRKTYRLPELFLVMATQNPIEQEGTYPLPEAQLDRFLLHLEVNYPNAEDELAILRLNRGE 188
Query: 187 DKGLFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTR--------VDKRLLV 238
KG + K + ++ Q+ + V +++ + YL ++ TR + + L +
Sbjct: 189 AKGQQAINKPLLTQQQVFSARQEVLNVHMAEAIENYLVRLVMATRHPANYDAKLAQWLTM 248
Query: 239 GASPRAAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVV 298
G SPRA L ++A A+L+GRD+V PDD++ +A VL HRLL+ + + EGI +++
Sbjct: 249 GVSPRATIALDRCARAHAWLQGRDFVTPDDVQVMAFSVLRHRLLLSYQAQAEGIHPNKII 308
Query: 299 REILNKV 305
+L+ V
Sbjct: 309 SHLLSLV 315
>pir||H83287 conserved hypothetical protein PA2875 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948964|gb|AAG06263.1|AE004713_12 (AE004713)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 305
Score = 232 bits (586), Expect = 4e-60
Identities = 124/297 (41%), Positives = 184/297 (61%), Gaps = 7/297 (2%)
Query: 12 KEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPD 71
K + + ++GKD + L LL+ GH++IE +PG+ KTT++ A+ LGL F RIQ T D
Sbjct: 10 KAVDEILLGKDRQVRLALACLLARGHLLIEDLPGMGKTTLSHALARVLGLSFQRIQFTSD 69
Query: 72 LFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEG 131
L P DI+GT +D+ G + GPIFA ++LADEINRA PK+QSALLEAM+E QVTIEG
Sbjct: 70 LLPGDILGTSVFDKDSGQFVFHPGPIFAELVLADEINRATPKSQSALLEAMEEGQVTIEG 129
Query: 132 RTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEML---KRKDK 188
T L PF +IAT+NP G ++LPE+QLDRF++++ +GYP + E +L R+D
Sbjct: 130 ATRPLPEPFFVIATQNPASQGGTFSLPESQLDRFLMRLSLGYPGRAAERSLLLGEARRD- 188
Query: 189 GLFSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAEHL 248
L + + + ++R SD +++Y+ ++ TR +G SPR + L
Sbjct: 189 -LLPRLEPLLDHAALAAFQAEVPKIRASDALVDYVLRLVEATRTQPAFALGLSPRGSLAL 247
Query: 249 LYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKV 305
L A++A A L GRDYVIP+D++++ V HRL +A+ G G +V+ +L +V
Sbjct: 248 LAAARAWALLAGRDYVIPEDVQAVLPAVAGHRLRDQADPTGHG--GGALVQWLLREV 302
>pir||B75496 moxR protein - Deinococcus radiodurans (strain R1)
>gi|6458321|gb|AAF10200.1|AE001920_3 (AE001920) moxR
protein [Deinococcus radiodurans]
Length = 320
Score = 215 bits (542), Expect = 5e-55
Identities = 116/298 (38%), Positives = 178/298 (58%), Gaps = 5/298 (1%)
Query: 12 KEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPD 71
+++ + ++GK + L LL+ GH++IE PGV KTT+A+ A+ LGL F R+Q T D
Sbjct: 27 EQLDQVILGKPTQLRLAVACLLARGHLLIEDQPGVGKTTLAQALARTLGLGFRRVQFTSD 86
Query: 72 LFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEG 131
L PAD++G +D ++ + GPIF+ ++LADEINRA P+TQ ALLEAM+ERQV+ G
Sbjct: 87 LLPADLLGVSIWDAASSTFRYQPGPIFSELLLADEINRATPRTQGALLEAMEERQVSEGG 146
Query: 132 RTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRKDKG-L 190
T L PF +IAT+NP F G LPEAQLDRF++ + +GYP E +L+ +G
Sbjct: 147 VTRPLPDPFFVIATQNPAAFVGTSPLPEAQLDRFLMTVTLGYPDARAERTLLETGGRGQS 206
Query: 191 FSEAKRVFSRDQIIKMIELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAEHLLY 250
E V +++ V + +L+YL + TR + G SPRA LL
Sbjct: 207 VRELPAVLDAPLLLRAQAEVDAVHAAPALLDYLQLLARATREQPAIASGLSPRALLALLA 266
Query: 251 ASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVEVP 308
A++A A+L GRD V+P+D++++ + +HRL+++ G V+R +L++ +P
Sbjct: 267 AARAWAYLAGRDMVLPEDVQAVFPALASHRLVLRDPAARPG----DVIRRLLDETPIP 320
>gb|AAC46196.1| (AF002133) transcriptional regulator [Mycobacterium avium]
Length = 309
Score = 192 bits (483), Expect = 4e-48
Identities = 93/173 (53%), Positives = 125/173 (71%)
Query: 13 EIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPDL 72
E+ + +VG+D ++E + + LLS+GHV++EG+PGVAK+ + FA+ +G F+RIQ TP
Sbjct: 51 EVKRIIVGQDQLVERMLVGLLSKGHVLLEGVPGVAKSLAVETFAKVVGGTFARIQFTPRP 110
Query: 73 FPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEGR 132
P DIIGT Y Q + + GP+ N +LADEINRA K QSALLE MQER V+I G+
Sbjct: 111 VPTDIIGTRIYRQGKEEFDTELGPVVVNFLLADEINRAPAKVQSALLEVMQERHVSIGGK 170
Query: 133 TYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKR 185
T+ L PFL++AT+NP+E EGVY LPEAQ DRF+ +I VGYPS EEE E++ R
Sbjct: 171 TFPLPNPFLVMATQNPIEHEGVYPLPEAQRDRFLFKINVGYPSPEEEREIIYR 223
>gb|AAB91544.1| (AF017119) MoxR homolog [Allochromatium vinosum]
Length = 191
Score = 183 bits (459), Expect = 3e-45
Identities = 89/162 (54%), Positives = 120/162 (73%)
Query: 10 LKKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLT 69
L+ ++ +A++G+ +IE L IALL++GH+++EG PG+AKTT K+ A L F RIQ T
Sbjct: 30 LRDQVGRAILGQHGLIERLLIALLADGHLLVEGAPGLAKTTAVKHLAAGLEGDFHRIQFT 89
Query: 70 PDLFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTI 129
PDL PAD+ GT Y DG+++ +GPIF N++LADE+NRA K QSALLEAM ERQVT+
Sbjct: 90 PDLLPADLTGTEIYRPHDGSFRFDRGPIFHNLLLADEVNRAPAKVQSALLEAMGERQVTV 149
Query: 130 EGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKV 171
TY L FL++AT+NP+E EG Y LPEAQLDRF+L ++V
Sbjct: 150 GRETYPLPELFLVMATQNPIEQEGTYPLPEAQLDRFLLHVRV 191
>gb|AAB62561.1| (AF006054) MoxR [Mycobacterium tuberculosis]
Length = 211
Score = 182 bits (457), Expect = 5e-45
Identities = 89/160 (55%), Positives = 117/160 (72%)
Query: 16 KAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPDLFPA 75
+ +VG+D ++E + + LLS+GHV++EG+PGVAK+ + FA+ +G FSRIQ TPDL P
Sbjct: 51 RIIVGQDQLVERMLVGLLSKGHVLLEGVPGVAKSLAVETFARVVGGTFSRIQFTPDLVPT 110
Query: 76 DIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEGRTYK 135
DIIGT Y Q + + GP+ AN +LA EINRA K QSALLE MQER V+I GRT+
Sbjct: 111 DIIGTRIYRQGREEFDTELGPVVANFLLAVEINRAPAKVQSALLEVMQERHVSIGGRTFP 170
Query: 136 LERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPS 175
+ PFL++AT+NP+E EGVY LPEAQ DRF+ +I VG PS
Sbjct: 171 MPSPFLVMATQNPIEHEGVYPLPEAQRDRFLFKINVGIPS 210
>pir||S43189 hypothetical protein - Pseudomonas aeruginosa
>gi|469101|emb|CAA46565.1| (X65613) ORF2 [Pseudomonas
aeruginosa]
Length = 263
Score = 181 bits (455), Expect = 8e-45
Identities = 87/172 (50%), Positives = 120/172 (69%)
Query: 12 KEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPD 71
K + + ++GKD + L LL+ GH++IE +PG+ KTT++ A+ LGL F RIQ T D
Sbjct: 10 KAVDEILLGKDRQVRLALACLLARGHLLIEDLPGMGKTTLSHALARWLGLSFQRIQFTSD 69
Query: 72 LFPADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEG 131
L P DI+GT +D+ G + GPIFA ++LADEINRA PK+QSALLEAM+E QVTIEG
Sbjct: 70 LLPGDILGTSVFDKDSGQFVFHPGPIFAELVLADEINRATPKSQSALLEAMEEGQVTIEG 129
Query: 132 RTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEML 183
T L PF +IAT+NP G ++LPE+QLDRF++++ +GYP + E +L
Sbjct: 130 ATRPLPEPFFVIATQNPASQGGTFSLPESQLDRFLMRLSLGYPGRAAERSLL 181
>dbj|BAA23276.1| (AB004097) ORF4 [Hyphomicrobium methylovorum]
Length = 352
Score = 152 bits (381), Expect = 4e-36
Identities = 99/321 (30%), Positives = 176/321 (53%), Gaps = 36/321 (11%)
Query: 13 EIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPDL 72
E+ +A+VG++ I LL IA+ + GHV++EG GV KTT+ + A ALG + R++ T DL
Sbjct: 33 EVGRAIVGQERAIRLLVIAVFARGHVLLEGDVGVGKTTLLRAVAHALGGSYERVEGTIDL 92
Query: 73 FPADIIGTVYYDQLDGNWKIKKGPIF-----ANVILADEINRAQPKTQSALLEAMQERQV 127
P+D+I + ++ DG +++ GP+ +V +EINRA+P+ S LL M ER +
Sbjct: 93 MPSDMIYYTFLNE-DGKPRVEPGPVLRHGSDLSVFFFNEINRARPQVHSLLLRLMAERSI 151
Query: 128 TIEGRTYKLERPF---LLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLK 184
T + E F L+ A +N +E E + LP A DRF++++ +G P+ +E L
Sbjct: 152 T----AFNTEHFFPHVLVFADRNRIEREETFELPAAARDRFLMEVSIGSPTDDESRRALL 207
Query: 185 RK------DKGLFSEAKRVFSRDQIIKMIELAR-RVRISDEVLEYLYEI----------- 226
+ D+ + + + V QI + ++ + V +S + +Y ++
Sbjct: 208 FETRFHDVDQLIGALKEGVIDYRQINALAKIIQSSVVVSPAIEKYTLDLWKAVRDPAAAN 267
Query: 227 INLTRVDKRLLV--GASPRAAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVK 284
+++ VD LV GASPR +L+ A++ A+L GR+ V+P+DI+ + +AHR+ +
Sbjct: 268 VSIPGVDMTRLVAGGASPRGMSYLIRAARVSAWLAGREMVVPEDIRDIFYECMAHRIFLS 327
Query: 285 AEYEVEGITGERVVREILNKV 305
YE + E +VR +++++
Sbjct: 328 PVYE---LRREELVRSLIDQI 345
>sp|P30621|MOXR_METEX MOXR PROTEIN (MXAR PROTEIN) >gi|1771259|emb|CAA69191.1| (Y07864)
mxaR [Methylobacterium extorquens]
Length = 341
Score = 148 bits (370), Expect = 7e-35
Identities = 98/302 (32%), Positives = 162/302 (53%), Gaps = 25/302 (8%)
Query: 11 KKEIHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTP 70
++EI KAVVG+D I LL IA+ + GHV++EG GV KTT+ + A+ LG + R++ T
Sbjct: 22 EREIAKAVVGQDRAIRLLTIAIFARGHVMLEGDVGVGKTTLLRAVARGLGGAYERVEGTV 81
Query: 71 DLFPADIIGTVYYDQLDGNWKIKKGPIF-----ANVILADEINRAQPKTQSALLEAMQER 125
D+ P D+I Y + DG +++ GP+ +V +EINRA+P+ + LL M ER
Sbjct: 82 DMMPTDLIYHTYLGE-DGRPRVEPGPVLRRAEDLSVFFFNEINRARPQVHALLLRIMAER 140
Query: 126 QVTIEGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEML-- 183
V+ R Y+ + A +N +E E + LP A DRF+++I + P +++
Sbjct: 141 SVSAFNREYRFPN-LQVFADRNRVEREETFELPAAARDRFLMEIGMEAPRDAARRDLVFD 199
Query: 184 -KRKDKGLFSEAKRVFSRD-QIIKMIELARRVRISDEVLEYLYEI--------------I 227
+ D +E D + I I A + IS E Y + +
Sbjct: 200 PRFHDTDRLTEEVEAGVLDFERIGTIASAIQHAISAEPAIEAYVVGLWEALVRPAPPHPL 259
Query: 228 NLTRVDKRLLVGASPRAAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEY 287
R+D+ + GASPR L+ A++ +A+LEGRD+++P+DI+++ V+AHR+ ++ Y
Sbjct: 260 ARHRMDRLVQGGASPRGVAFLVRAARVRAWLEGRDWLVPEDIRAVFPEVMAHRVFLEPVY 319
Query: 288 EV 289
E+
Sbjct: 320 EM 321
>sp|P29901|MOXR_PARDE MOXR PROTEIN >gi|94691|pir||D41377 methanol dehydrogenase
regulatory protein moxR [validated] - Paracoccus
denitrificans
Length = 339
Score = 134 bits (333), Expect = 2e-30
Identities = 89/300 (29%), Positives = 154/300 (50%), Gaps = 27/300 (9%)
Query: 14 IHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPDLF 73
++ V+G+ I LL I+ L GHV++ G G KTT+ + A+ALG + R++ T DL
Sbjct: 19 LNGVVLGQARTIRLLLISALCRGHVLLAGDVGTGKTTLLRAMARALGGPYGRVEGTVDLL 78
Query: 74 PADIIGTVYYDQLDGNWKIKKGPIFAN-----VILADEINRAQPKTQSALLEAMQERQVT 128
P D+I + + + DG +I+ GP+ V +EINRA+P+ + LL M ER ++
Sbjct: 79 PTDLIYSTHIAE-DGRPRIEPGPVLEQGEDMAVFFFNEINRARPQVHALLLRLMAERSLS 137
Query: 129 IEGRTYKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYPSKEEELEMLKRKDK 188
R Y+ + A +N +E + + LP A DRF+++I V P+ E+ L + +
Sbjct: 138 AFRREYRFPH-LQVFADRNQIERDETFELPAAARDRFLMEIAVDAPAAPEDRVALAFEPR 196
Query: 189 -----GLFSEAKRVFSRDQIIKMIE--LARRVRISDEVLEYLYEIINLTR---------- 231
L +E + + + + + S + Y++++ R
Sbjct: 197 FHDTTALIAEVGQGILPYRGLNGLAAGVQSGTHASPALRRYVFDLCEALRNPASAGLALE 256
Query: 232 -VDKRLLV--GASPRAAEHLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYE 288
D L+ G SPR +HL+ A++A A+LEGR+ V+P D++++ PV+AHR+ + YE
Sbjct: 257 GADAARLIRGGVSPRGMQHLVRAARACAWLEGREAVLPQDVRAVLAPVMAHRIFLSPAYE 316
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.383
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104054554
Number of Sequences: 2977
Number of extensions: 4105745
Number of successful extensions: 12261
Number of sequences better than 1.0e-10: 41
Number of HSP's better than 0.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12178
Number of HSP's gapped (non-prelim): 44
length of query: 309
length of database: 189,106,746
effective HSP length: 58
effective length of query: 251
effective length of database: 154,394,500
effective search space: 38753019500
effective search space used: 38753019500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)