BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1297 (PAB1297) DE:Hypothetical protein
(411 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75008 hypothetical protein PAB1297 - Pyrococcus abyssi (st... 803 0.0
pir||A71147 hypothetical protein PH0387 - Pyrococcus horikoshii ... 382 e-105
dbj|BAB04451.1| (AP001509) unknown conserved protein in others [... 76 7e-13
pir||D83106 hypothetical protein PA4323 [imported] - Pseudomonas... 75 2e-12
>pir||C75008 hypothetical protein PAB1297 - Pyrococcus abyssi (strain Orsay)
>gi|5459019|emb|CAB50505.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 411
Score = 803 bits (2051), Expect = 0.0
Identities = 411/411 (100%), Positives = 411/411 (100%)
Query: 1 MKRETYLWTLIVLGLLHSYLSASVFGALLSLSIFMYLYYSRMSFNPDIRSSLLVKRISLE 60
MKRETYLWTLIVLGLLHSYLSASVFGALLSLSIFMYLYYSRMSFNPDIRSSLLVKRISLE
Sbjct: 1 MKRETYLWTLIVLGLLHSYLSASVFGALLSLSIFMYLYYSRMSFNPDIRSSLLVKRISLE 60
Query: 61 EGKVGSVKISLENRGSPVYVNFKYQRIRLERGEKRIVTIPVLGKEKGIFDIDVDATVEDI 120
EGKVGSVKISLENRGSPVYVNFKYQRIRLERGEKRIVTIPVLGKEKGIFDIDVDATVEDI
Sbjct: 61 EGKVGSVKISLENRGSPVYVNFKYQRIRLERGEKRIVTIPVLGKEKGIFDIDVDATVEDI 120
Query: 121 FGIYEEKLKVGTITLEVLPSIDSIRKAAMEDYNIRLKEKYKKSLIGSLSLEIGGLREYYP 180
FGIYEEKLKVGTITLEVLPSIDSIRKAAMEDYNIRLKEKYKKSLIGSLSLEIGGLREYYP
Sbjct: 121 FGIYEEKLKVGTITLEVLPSIDSIRKAAMEDYNIRLKEKYKKSLIGSLSLEIGGLREYYP 180
Query: 181 GDDVRRIDWKASARLQKLIVREFLKEADADVYIVLDQSREMRKGKVDYASTLALYLATLL 240
GDDVRRIDWKASARLQKLIVREFLKEADADVYIVLDQSREMRKGKVDYASTLALYLATLL
Sbjct: 181 GDDVRRIDWKASARLQKLIVREFLKEADADVYIVLDQSREMRKGKVDYASTLALYLATLL 240
Query: 241 IRRGYKVGLIRYWESGFRKIDPGKGGAQLDKIRKELKFRRERGLLSTRLGVSRLGEKAIR 300
IRRGYKVGLIRYWESGFRKIDPGKGGAQLDKIRKELKFRRERGLLSTRLGVSRLGEKAIR
Sbjct: 241 IRRGYKVGLIRYWESGFRKIDPGKGGAQLDKIRKELKFRRERGLLSTRLGVSRLGEKAIR 300
Query: 301 FLKKVYPKGRGIREALLEIKTPSYIILISDLMTQTPLLYSLILMVRKKHKIIIVSPNPIL 360
FLKKVYPKGRGIREALLEIKTPSYIILISDLMTQTPLLYSLILMVRKKHKIIIVSPNPIL
Sbjct: 301 FLKKVYPKGRGIREALLEIKTPSYIILISDLMTQTPLLYSLILMVRKKHKIIIVSPNPIL 360
Query: 361 FYRGELNKDTLLKLYERYVMREKNLKKFSSLVPVVDVGPSDYVKEVLRGLQ 411
FYRGELNKDTLLKLYERYVMREKNLKKFSSLVPVVDVGPSDYVKEVLRGLQ
Sbjct: 361 FYRGELNKDTLLKLYERYVMREKNLKKFSSLVPVVDVGPSDYVKEVLRGLQ 411
>pir||A71147 hypothetical protein PH0387 - Pyrococcus horikoshii
>gi|3256779|dbj|BAA29462.1| (AP000002) 422aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 422
Score = 382 bits (970), Expect = e-105
Identities = 208/425 (48%), Positives = 293/425 (68%), Gaps = 18/425 (4%)
Query: 1 MKRETYLWTLIVLGLLHSYLSASVFGALLSLSIFMYLYYSRMSFNPDIRSSLLVKRISLE 60
MKRE L TLI + LL+ YLS ++ +L + +F+Y+ + R++FNP + + + LE
Sbjct: 1 MKREDALLTLIGVDLLYGYLSNNLASSLFAFLLFLYILHERINFNPKVDVEVKLPE-RLE 59
Query: 61 EGKVGSVKISLENRGSPVYVNFKYQ---------RIRLERGEKRIVTIPVLGKEKGIFDI 111
EGK+ V + + NRGS + K + R++L+ GEK +V + V KG +
Sbjct: 60 EGKITEVNVVVRNRGSKGILEVKIEGEDLIGEAKRVKLDSGEK-LVKLSVKPLNKGDKVL 118
Query: 112 DVDATVEDIFGIYEEKLKVGTITLEVLPSIDSIRKAAMEDYNIRLKEKYKKSLIGSLSLE 171
V A ED +Y ++ +++VLPS+DSIR+AA E+ +IR++E KK IG S E
Sbjct: 119 KVKALFEDELNLYYSEVYEAEFSIQVLPSVDSIREAAREEVSIRMREALKKGKIGVESTE 178
Query: 172 IGGLREYYPGDDVRRIDWKASARLQKLIVREFLKEADADVYIVLDQSREMRK----GKVD 227
+ GLREY PGDDVRRIDWKA+ RL+KLIV+EF++E++ DVYIVLD +REMRK K+D
Sbjct: 179 LYGLREYLPGDDVRRIDWKATTRLRKLIVKEFMRESEGDVYIVLDATREMRKRIRRSKID 238
Query: 228 YASTLALYLATLLIRRGYKVGLIRYWESGFRKIDPGKGGAQLDKIRKELKFRRERGLLST 287
YAS+L LY+AT+LIR +VGLI + E F+ + P KG QL++IR+ L+F+ +GL S
Sbjct: 239 YASSLVLYIATILIRSNKRVGLILFSEDEFKVVKPEKGSEQLERIRETLRFKPLKGLTSF 298
Query: 288 RLGVSRLGEKAIRFLKKVYP-KGRGIREALLEIKTPSYIILISDLMTQTPLLYSLILMVR 346
+ V RL K FL+K++P K RG+ EALL I+ PSY+ILI+DLM+ TP LYS + MV+
Sbjct: 299 KGEVGRL--KTWDFLRKLFPRKRRGVEEALLSIRNPSYVILITDLMSNTPRLYSAVSMVK 356
Query: 347 KKHKIIIVSPNPILFYRGELNKDTLLKLYERYVMREKNLKKFSSLVPVVDVGPSDYVKEV 406
KKHK+II+SPNP+LFY GEL+++TL LYE+Y RE+ L+KF+SLVP VD+GPSDY +EV
Sbjct: 357 KKHKVIILSPNPVLFYSGELDEETLRFLYEKYRERERILRKFNSLVPTVDLGPSDYGREV 416
Query: 407 LRGLQ 411
L L+
Sbjct: 417 LEVLE 421
>dbj|BAB04451.1| (AP001509) unknown conserved protein in others [Bacillus
halodurans]
Length = 457
Score = 76.1 bits (184), Expect = 7e-13
Identities = 72/276 (26%), Positives = 130/276 (47%), Gaps = 35/276 (12%)
Query: 91 RGEKRIVTIPVLGKEKGIFDID-VDATVEDIFGIYEEKLKVGTIT-LEVLPSIDSIRK-- 146
+G+ + GKE+G + + ++ FG++ ++ KV +++ P + +R
Sbjct: 132 QGKTATIAYTTAGKERGNYPFSYLRIRLKGPFGLWMKQTKVSIEQEMKIFPDLSGVRGIL 191
Query: 147 AAMED-YNIRLKEKYKKSLIGSLSLEIGGLREYYPGDDVRRIDWKASARLQKLIVREFLK 205
A+M++ + + K+ +K GS E+ +REY P DD R I+WKA+AR L+ EF
Sbjct: 192 ASMQNQFMLEGKKVNRKERTGS---ELHAIREYIPDDDPRLINWKATARTGTLMTSEFRP 248
Query: 206 EADADVYIVLDQSREM-----RKGKVDYASTLALYLATLLIRRGYKVGLIRYWESGFRKI 260
E V ++LD R M + K+D AL LA + +++G KVG+I + +
Sbjct: 249 ERGKVVMLMLDCGRMMGIELNNRTKLDATIEAALSLAAVALKQGDKVGVIAFSNEIKAYV 308
Query: 261 DPGKGGAQLDKIRKELKFRRERGLLSTRLGVSRLGEKAIRFLKKVYPKGRGIREALLEIK 320
P G QL ++ E + + + A+++L KV K
Sbjct: 309 PPATGMKQL-QVMTEAIYDLKSDFVEASYSF------ALQYLMKVQ-------------K 348
Query: 321 TPSYIILISDLMTQ--TPLLYSLILMVRKKHKIIIV 354
S I+L SD+ L SL+L +R++H ++++
Sbjct: 349 KRSLIVLFSDMDNYMFDSGLRSLLLRIRRQHYLLLL 384
>pir||D83106 hypothetical protein PA4323 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9950547|gb|AAG07711.1|AE004848_10
(AE004848) hypothetical protein [Pseudomonas aeruginosa]
Length = 443
Score = 74.5 bits (180), Expect = 2e-12
Identities = 43/107 (40%), Positives = 59/107 (54%), Gaps = 5/107 (4%)
Query: 168 LSLEIGGLREYYPGDDVRRIDWKASARLQKLIVREFLKEADADVYIVLDQSREMRK---- 223
L LE LRE+ GD +R+IDWKA+AR + I RE+ E D + +LD R MR
Sbjct: 198 LGLEFHQLREFRDGDTLRQIDWKATARKRTPIAREYQDERDQQILFLLDCGRRMRSQDGD 257
Query: 224 -GKVDYASTLALYLATLLIRRGYKVGLIRYWESGFRKIDPGKGGAQL 269
D+A +L LA + +R+G VG + + R + PGKG AQL
Sbjct: 258 LSHFDHALNASLLLAYVALRQGDAVGAMTFAGDDRRHLPPGKGSAQL 304
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.142 0.396
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143633734
Number of Sequences: 2977
Number of extensions: 5979535
Number of successful extensions: 14793
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14785
Number of HSP's gapped (non-prelim): 4
length of query: 411
length of database: 189,106,746
effective HSP length: 57
effective length of query: 354
effective length of database: 154,992,987
effective search space: 54867517398
effective search space used: 54867517398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)