BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1301 (PAB1301) DE:LPS BIOSYNTHESIS RFBU RELATED PROTEIN
(330 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75007 lps biosynthesis rfbu related protein PAB1301 - Pyro... 650 0.0
pir||C71154 hypothetical protein PH0434 - Pyrococcus horikoshii ... 390 e-107
pir||H64446 probable hexosyltransferase (EC 2.4.1.-) MJ1178 [sim... 147 1e-34
pir||A75033 probable hexosyltransferase (EC 2.4.1.-) PAB0827 [si... 120 3e-26
pir||C69098 probable hexosyltransferase (EC 2.4.1.-) MTH173 - Me... 116 3e-25
pir||G75058 probable hexosyltransferase (EC 2.4.1.-) PAB1410 [si... 102 4e-21
dbj|BAB05402.1| (AP001512) unknown conserved protein [Bacillus h... 102 7e-21
pir||F71196 probable hexosyltransferase (EC 2.4.1.-) PH1844 - Py... 100 3e-20
sp|P42982|YPJH_BACSU HYPOTHETICAL 42.0 KDA PROTEIN IN DAPB-PAPS ... 99 8e-20
gb|AAA92877.1| (L38424) unknown [Bacillus subtilis] 99 8e-20
gb|AAB84956.1| (AE000829) LPS biosynthesis RfbU related protein ... 98 1e-19
pir||H69158 LPS biosynthesis RfbU related protein - Methanobacte... 98 1e-19
emb|CAB50741.1| (AJ243803) putative glycosyl transferase [Strept... 97 3e-19
gi|11499317 galactosyltransferase [Archaeoglobus fulgidus] >gi|7... 96 6e-19
dbj|BAB05134.1| (AP001512) unknown conserved protein in others [... 96 6e-19
pir||F64500 probable hexosyltransferase (EC 2.4.1.-) MJ1607 - Me... 94 2e-18
gi|11498225 LPS biosynthesis protein, putative [Archaeoglobus fu... 93 5e-18
pir||T40367 n-acetylglucosaminyl-phosphatidylinositol - fission ... 89 5e-17
pir||E75381 conserved hypothetical protein - Deinococcus radiodu... 89 7e-17
pir||C72354 conserved hypothetical protein - Thermotoga maritima... 88 1e-16
pir||B70610 hypothetical protein Rv1212c - Mycobacterium tubercu... 86 5e-16
pir||S76126 hypothetical protein - Synechocystis sp. (strain PCC... 84 2e-15
pir||F69142 probable hexosyltransferase (EC 2.4.1.-) MTH332 [sim... 83 3e-15
pir||C72340 probable hexosyltransferase (EC 2.4.1.-) TM0744 - Th... 83 4e-15
gb|AAF14309.1| (U45308) SqdX [Synechococcus PCC7942] 82 1e-14
gi|11497939 conserved hypothetical protein [Archaeoglobus fulgid... 80 4e-14
emb|CAB70927.1| (AL137778) putative sugar transferase [Streptomy... 80 4e-14
emb|CAC11484.1| (AL445064) conserved hypothetical protein [Therm... 80 4e-14
pir||A75059 probable hexosyltransferase (EC 2.4.1.-) PAB0973 [si... 80 5e-14
pir||D69143 LPS biosynthesis RfbU related protein - Methanobacte... 78 1e-13
sp|Q11152|Y486_MYCTU HYPOTHETICAL 50.5 KDA PROTEIN RV0486 >gi|74... 78 2e-13
pir||D72511 probable hexosyltransferase (EC 2.4.1.-) APE2066 [si... 75 1e-12
emb|CAC12195.1| (AL445066) N-acetylglucosaminyl-phosphatidylinos... 75 1e-12
gi|11497659 conserved hypothetical protein [Archaeoglobus fulgid... 75 1e-12
sp|P54138|Y486_MYCLE HYPOTHETICAL 43.5 KDA PROTEIN U2168F >gi|21... 74 2e-12
emb|CAB43611.1| (AJ239004) galactosyl transferase [Streptococcus... 74 2e-12
gb|AAK42884.1| Glycosyltransferase, putative [Sulfolobus solfata... 74 3e-12
pir||F70937 hypothetical protein Rv2188c - Mycobacterium tubercu... 74 3e-12
emb|CAB63280.1| (AJ251713) mannosyltransferase-like protein [Yer... 73 4e-12
emb|CAB63299.1| (AJ251712) mannosyltransferase-like protein [Yer... 73 5e-12
pir||T45962 hypothetical protein F7J8.200 - Arabidopsis thaliana... 73 6e-12
pir||F70441 capsular polysaccharide biosynthsis protein - Aquife... 73 6e-12
sp|Q48453|YC07_KLEPN HYPOTHETICAL 41.2 KD PROTEIN IN CPS REGION ... 72 8e-12
pir||E72354 probable hexosyltransferase (EC 2.4.1.-) TM0622 - Th... 72 1e-11
gb|AAD50490.1|AF172324_8 (AF172324) WbnE [Escherichia coli] 72 1e-11
pir||S74777 hypothetical protein slr1076 - Synechocystis sp. (st... 70 3e-11
sp|P54490|YQGM_BACSU HYPOTHETICAL 40.8 KDA PROTEIN IN SODA-COMGA... 70 4e-11
pir||C72590 probable hexosyltransferase (EC 2.4.1.-) APE1191 [si... 69 5e-11
sp|Q48454|YC08_KLEPN HYPOTHETICAL 42.6 KD PROTEIN IN CPS REGION ... 69 7e-11
pir||S77553 probable hexosyltransferase (EC 2.4.1.-) sll1971 [si... 69 9e-11
>pir||G75007 lps biosynthesis rfbu related protein PAB1301 - Pyrococcus abyssi
(strain Orsay) >gi|5459015|emb|CAB50501.1| (AJ248288)
LPS BIOSYNTHESIS RFBU RELATED PROTEIN [Pyrococcus
abyssi]
Length = 330
Score = 650 bits (1659), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MRILMVGHYPPHRGGVARHLKEVVERLRRRHSVDVLTYGTVATDVYSVKVPNVFGLRGIS 60
MRILMVGHYPPHRGGVARHLKEVVERLRRRHSVDVLTYGTVATDVYSVKVPNVFGLRGIS
Sbjct: 1 MRILMVGHYPPHRGGVARHLKEVVERLRRRHSVDVLTYGTVATDVYSVKVPNVFGLRGIS 60
Query: 61 FSFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMSKLP 120
FSFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMSKLP
Sbjct: 61 FSFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMSKLP 120
Query: 121 LGRYFVKASLREADAVTAVSHFLAKRAISLGAKSVEVISNGVSTCGDRVSKKYIVFLGKV 180
LGRYFVKASLREADAVTAVSHFLAKRAISLGAKSVEVISNGVSTCGDRVSKKYIVFLGKV
Sbjct: 121 LGRYFVKASLREADAVTAVSHFLAKRAISLGAKSVEVISNGVSTCGDRVSKKYIVFLGKV 180
Query: 181 SKYKGIDEFLELARRFPELEFLIAGEGNLRELPSNVKFLGYVNPDDVLSRALALVLPSKR 240
SKYKGIDEFLELARRFPELEFLIAGEGNLRELPSNVKFLGYVNPDDVLSRALALVLPSKR
Sbjct: 181 SKYKGIDEFLELARRFPELEFLIAGEGNLRELPSNVKFLGYVNPDDVLSRALALVLPSKR 240
Query: 241 EGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFLFDSIDEAEKFLRVLLDLKVNAKV 300
EGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFLFDSIDEAEKFLRVLLDLKVNAKV
Sbjct: 241 EGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFLFDSIDEAEKFLRVLLDLKVNAKV 300
Query: 301 GALGKRVASLYSWDDVAIRYERLYRRVLER 330
GALGKRVASLYSWDDVAIRYERLYRRVLER
Sbjct: 301 GALGKRVASLYSWDDVAIRYERLYRRVLER 330
>pir||C71154 hypothetical protein PH0434 - Pyrococcus horikoshii
>gi|3256837|dbj|BAA29520.1| (AP000002) 336aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 336
Score = 390 bits (991), Expect = e-107
Identities = 195/336 (58%), Positives = 260/336 (77%), Gaps = 9/336 (2%)
Query: 1 MRILMVGHYPPHRGGVARHLKEVVERLRRRHSVDVLTYGTV---ATDVYSVKVPNVFGLR 57
MRILM+GHYPPHRGGVARH+K++V+ L R H V V+TYGTV +V VKVPN+FGLR
Sbjct: 1 MRILMIGHYPPHRGGVARHVKDLVDYLSREHEVHVITYGTVKGKGENVSYVKVPNIFGLR 60
Query: 58 GISFSFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMS 117
G SF+ LASK V+LH++ N+DLIHAHYVGTTS+AGVL K + G+PLVVTAHGSDL+F S
Sbjct: 61 GTSFTLLASKLGVKLHKKLNFDLIHAHYVGTTSYAGVLIKERTGLPLVVTAHGSDLDFTS 120
Query: 118 KLPLGRYFVKASLREADAVTAVSHFLAKRAISLGAKSVEVISNGVSTCGDRVSKKYIVFL 177
KLPLG Y+VK SL +A+AV AVSH+L +A LGA++V+VI N V+ G + +YI F+
Sbjct: 121 KLPLGSYYVKKSLIKANAVIAVSHYLGVKAKMLGAENVKVIPNWVTKTG-KSRGEYIAFI 179
Query: 178 GKVSKYKGIDEFLELARRFPELEFLIAGEGNL-----RELPSNVKFLGYVNPDDVLSRAL 232
G++++YKG+++F+ELA+ FP+ +F++AGEG L +E P NVKFLGY +DVLS+A
Sbjct: 180 GRLTEYKGVEDFIELAKLFPQEKFVVAGEGPLLKKLMKESPKNVKFLGYKPSEDVLSKAK 239
Query: 233 ALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFLFDSIDEAEKFLRVLL 292
L+LPSKREGFG+VILEANSF VP+LGR+VGGI E+IRDGKNG+ F ++DEA ++L+ LL
Sbjct: 240 VLILPSKREGFGLVILEANSFKVPSLGRRVGGIREIIRDGKNGYTFSALDEAYEYLKELL 299
Query: 293 DLKVNAKVGALGKRVASLYSWDDVAIRYERLYRRVL 328
+ K K GA+ R++ YS ++ R ++Y V+
Sbjct: 300 NPKKGRKAGAISYRISRFYSMEESCKRILKVYEEVV 335
>pir||H64446 probable hexosyltransferase (EC 2.4.1.-) MJ1178 [similarity] -
Methanococcus jannaschii >gi|1591805|gb|AAB99181.1|
(U67559) conserved hypothetical protein [Methanococcus
jannaschii]
Length = 351
Score = 147 bits (368), Expect = 1e-34
Identities = 102/348 (29%), Positives = 170/348 (48%), Gaps = 23/348 (6%)
Query: 1 MRILMVGHYPPHRGGVARHLKEVVERLRRRHSVDVLTYGTVATDVYSV----KVPNVFGL 56
M++LM Y P+ GG+ H++ +V+RL+ +LTY + + Y VP++
Sbjct: 4 MKVLMPSIYYPYIGGITLHVENLVKRLKDIE-FHILTYDSYEENEYKNVIIHNVPHLKKF 62
Query: 57 RGISFSFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFM 116
RGIS+ A K + E DLIH+HY G L K KL IP ++T HGSD +
Sbjct: 63 RGISYLINAYKIGKNIIESEGIDLIHSHYAFPQGCVGALLKNKLSIPHILTLHGSDALIL 122
Query: 117 SKLPLGRYFVKASLREADAVTAVSHFLAKRAISLGAKSVEVISNGVS--TCGDRVSKKYI 174
GRYF K + +D + VS ++ + VI NGV+ + +
Sbjct: 123 KNSIKGRYFFKYATTNSDKIICVSKYIKNQLDENLKNRAIVIYNGVNKEILYNEGDYNFG 182
Query: 175 VFLGKVSKYKGIDEFLELARRFPELEFLIAGEGNL---------RELPSNVKFLGYVNPD 225
+F+G KG+D ++ + + F + G+G L + S+++ LG + D
Sbjct: 183 LFVGAFVPQKGVDILIDAIKDI-DFNFKLIGDGKLYKKIENFVVKNNLSHIELLGRKSFD 241
Query: 226 DVLS---RALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFLFDS-- 280
+V S + LV+PS+ EGFGMV +E + S P + +VGG+ E++ DG NG L +
Sbjct: 242 EVASFMRKCSFLVVPSRSEGFGMVAVEGMACSKPVIATRVGGLGEIVIDGYNGLLAEKNN 301
Query: 281 -IDEAEKFLRVLLDLKVNAKVGALGKRVASLYSWDDVAIRYERLYRRV 327
D EK L ++ + ++ +G GK + +SW+ + ++Y +
Sbjct: 302 PNDLKEKILELINNEELRKTLGENGKEFSKKFSWEKCVMGVRKVYEEL 349
>pir||A75033 probable hexosyltransferase (EC 2.4.1.-) PAB0827 [similarity] -
Pyrococcus abyssi (strain Orsay)
>gi|5458671|emb|CAB50158.1| (AJ248287)
GALACTOSYLTRANSFERASE or LPS BIOSYNTHESIS RFBU RELATED
PROTEIN [Pyrococcus abyssi]
Length = 371
Score = 120 bits (297), Expect = 3e-26
Identities = 106/352 (30%), Positives = 166/352 (47%), Gaps = 38/352 (10%)
Query: 9 YPPHRGGVARHLKEVVERLRRR-HSVDVLTYGTV-----ATDVYSVKVPNVFGL--RGIS 60
Y P GGVA H+ + LR+ H V ++T Y + + V GL GI+
Sbjct: 13 YFPKIGGVAIHVHNLAIHLRKMGHEVSIVTNALTNGKEGELQKYGIDLIKVPGLIKDGIN 72
Query: 61 FSFLASKKIVELHEERNYDLIHAHYVGTT-SFAGVLAKRKLGIPLVVTAHGSDLEFMSKL 119
S +A + + +D++HA + T S + A K+G +VT H + E S L
Sbjct: 73 LSMIAKSSNSLVEYLKGFDVVHAQHAFTPLSLKSIPAGNKVGALTLVTNHSVEFENFSIL 132
Query: 120 ----PLGRYFVKASLREADAVTAVSHFLAKRAISLGAKSVEVISNGVST-----CGDRVS 170
+ + K L + VS + I NGV+ G
Sbjct: 133 NGFSKMSYSYFKMYLGQVKVGIGVSKASVSFLRKFTNAPIVEIPNGVNIERFNGRGREWG 192
Query: 171 KKYIVFLGKVSKYKGIDEFLELARRFPELEFLIAGEGNLREL----------PSNVKFLG 220
+ I+++G++ KG++ +L A +F E + I G+G++R++ V+FLG
Sbjct: 193 TRNILYVGRLEPRKGVN-YLISAMKFVEGKLTIVGDGSMRKVLKMQAKKLGVEDKVEFLG 251
Query: 221 YVNPDDVL---SRALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFL 277
+++ ++++ ++ VLPS E FG+V+LEA + VP +G VGGIPE+I D G +
Sbjct: 252 FISQEELILLYKKSEVFVLPSLSEAFGIVLLEAMASEVPVIGTSVGGIPEIIGDA--GII 309
Query: 278 F---DSIDEAEKFLRVLLDLKVNAKVGALG-KRVASLYSWDDVAIRYERLYR 325
DS A +L + K ++G LG KRV LYSWD VA R ERLYR
Sbjct: 310 VPPRDSKALANAINAILSNQKTAKRLGKLGRKRVERLYSWDVVAERTERLYR 361
>pir||C69098 probable hexosyltransferase (EC 2.4.1.-) MTH173 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621216|gb|AAB84679.1| (AE000805) LPS biosynthesis
RfbU related protein [Methanobacterium
thermoautotrophicum]
Length = 382
Score = 116 bits (288), Expect = 3e-25
Identities = 115/382 (30%), Positives = 175/382 (45%), Gaps = 59/382 (15%)
Query: 1 MRILMVGHY--PPHRGGVARHLKEVVERL-RRRHSVDVLTYGTVATDVYS---------- 47
MRIL+V + P + GG R E+ RL R H VDV++ G Y
Sbjct: 4 MRILIVSDFFVPHYNGGGERRYFEIARRLVERGHVVDVISMGIHGVGEYEEVSGVRVHHL 63
Query: 48 ---VKVPNVFGLRGISFSFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPL 104
++ P + G A+ + V H+ YD+I A LA R G P+
Sbjct: 64 GPRIRKPPLRGPLDFIRFMAAAFRWVMTHD---YDIIDAQTYAPL-LPAFLASRIHGTPM 119
Query: 105 VVT------AHGSDLEFMSKLP--LGRYFVKASLREADAVTAVSHFLAKRAISLGAKS-- 154
V T AHG SK L R ++ D V VS A L ++
Sbjct: 120 VATIHDVSSAHGDQWLQSSKTATILERVLMRLPY---DGVITVSRSTASALTELHGRNPD 176
Query: 155 -VEVISNGVST-CGDRVSK---KYIVFLGKVSKYKGIDEFLELARR----FPELEFLIAG 205
+ +I NGV D V+ YI+F+G+++ +K +D +E+ + FP+L I G
Sbjct: 177 GIHIIPNGVDPELIDSVTPATGNYIIFVGRLAPHKHVDHLIEVFSKLVIDFPDLRLEIIG 236
Query: 206 EGNLRE----------LPSNVKFLGYVNPDDVLSR---ALALVLPSKREGFGMVILEANS 252
+G R + +V F ++ +V+SR A LVLPS REGFGMV+ EA +
Sbjct: 237 DGVERARLKAMVDECGIRDSVTFHHNLSYPEVISRIRGARVLVLPSTREGFGMVLAEAGA 296
Query: 253 FSVPALGRKVGGIPELIRDGKNGFLFDSIDEA---EKFLRVLLDLKVNAKVGALG-KRVA 308
VPA+ + GG+ E+I DG+NGFL + D+ +K ++ D ++ ++G+ G K+V
Sbjct: 297 CGVPAVAYRSGGVVEVIDDGENGFLVEPCDKEALHDKIKLLISDDELRDRMGSQGRKKVE 356
Query: 309 SLYSWDDVAIRYERLYRRVLER 330
+ WD V ER Y ++ R
Sbjct: 357 EEFIWDRVVDEVERTYSFIIAR 378
>pir||G75058 probable hexosyltransferase (EC 2.4.1.-) PAB1410 [similarity] -
Pyrococcus abyssi (strain Orsay)
>gi|5458877|emb|CAB50364.1| (AJ248287) LPS BIOSYNTHESIS
RFBU RELATED PROTEIN. [Pyrococcus abyssi]
Length = 368
Score = 102 bits (253), Expect = 4e-21
Identities = 104/359 (28%), Positives = 161/359 (43%), Gaps = 43/359 (11%)
Query: 9 YPPHRGGVARHLKEVVERLRRRHSVD--VLTYGTVATDVYSVKVPNVFGL-----RGISF 61
YP +GGV + + E+ RL ++H V L +G + KV L R I
Sbjct: 11 YPFVKGGVEKRVYEIGTRLSKKHEVHWISLDWGGNIPSIKLQKVGRGVSLYSGQRRSIRE 70
Query: 62 SFLASKKIVELHEERNYDLIHAH-YVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMSKL- 119
+ S K++ L + +YD+I + F+ + +P+V+T H E+ K
Sbjct: 71 ALYFSAKVL-LKAKWDYDIIDCQQFPYLPCFSSKVHSILRNVPMVITWHEIWKEYWKKYL 129
Query: 120 ----PLGRYFVKASLREADAVTAVSHFLAKRAISLGAKSVEVISNGVSTCGDRVSKKY-- 173
+G K R +VS KR S+G S +I NG+ + KK
Sbjct: 130 GNMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDSA-LIPNGIDFKRIQRVKKLPQ 188
Query: 174 ---IVFLGKVSKYKGIDEFLELARRF----PELEFLIAGEGNLR----------ELPSNV 216
++F+G++ K K +D L + P+L+ LI GEG + EL NV
Sbjct: 189 EYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLELTENV 248
Query: 217 KFLGYVNPDDVLSRAL----ALVLPSKREGFGMVILEANSFSVP--ALGRKVGGIPELIR 270
KF+ ++N + L L VLPSKREGFG+++LEAN+ VP L + +LI
Sbjct: 249 KFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPLNASRDLIT 308
Query: 271 DGKNGFLF-DSIDEAEKFLRVLLDLKVNAKVGALGKRVASLYSWDDVAIRYERLYRRVL 328
G NGF+ + +++ + L L K + + A Y WD++ ERLY RVL
Sbjct: 309 HGYNGFISPPNPSSLAEYIELSLSLGKKFKRNCI--KNARRYDWDNITQLTERLYERVL 365
>dbj|BAB05402.1| (AP001512) unknown conserved protein [Bacillus halodurans]
Length = 375
Score = 102 bits (251), Expect = 7e-21
Identities = 78/305 (25%), Positives = 148/305 (47%), Gaps = 38/305 (12%)
Query: 61 FSFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLG--IPLVVTAHGSDLEFMSK 118
+ S K+ E+ + + DL+H HY + +LAK+ +G + +V T HG+D+ +
Sbjct: 70 YDLTLSSKMAEVAKRQELDLLHVHYAVPHAICAILAKQMVGDSLKVVTTLHGTDITVLGY 129
Query: 119 LPLGRYFVKASLREADAVTAVSHFLAKRAISL--GAKSVEVISNGV-------------- 162
P +K + ++D VTAVS L K+ +L K +E + N V
Sbjct: 130 DPALAEIIKFGIEKSDLVTAVSDDLVKQTKTLLHTEKPIETVYNFVDPREYYRKDVSELK 189
Query: 163 STCGDRVSKKYIVFLGKVSKYKGIDEFLE---LARRFPELEFLIAGEG----------NL 209
+T G +K +V + + K + + + + R + + L+ G+G
Sbjct: 190 ATYGIGEDEKVVVHVSNFRRVKRVPDIIRCFRIIREHVKAKLLLIGDGPDATLACHLIKE 249
Query: 210 RELPSNVKFLG-YVNPDDVLSRALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPEL 268
+L +V LG + +++S + ++L S++E FG+V LEA + VP +G +GGIPE+
Sbjct: 250 LDLKDDVLMLGNQKHIPELMSLSDVMLLLSEKESFGLVALEAMACGVPVIGANIGGIPEV 309
Query: 269 IRDGKNGFLFDSIDEAEKFLRVLLDLKVNAK-----VGALGKRVASLYSWDDVAIRYERL 323
I D + G++ + I + + + ++L N + A R A+++S + + +YE L
Sbjct: 310 IVDEETGYICE-IGDIQGVAQKAIELLTNKRRHEMFAEASINRAATVFSSEQIVRQYEDL 368
Query: 324 YRRVL 328
Y ++L
Sbjct: 369 YEQLL 373
>pir||F71196 probable hexosyltransferase (EC 2.4.1.-) PH1844 - Pyrococcus
horikoshii >gi|3258282|dbj|BAA30965.1| (AP000007) 381aa
long hypothetical protein [Pyrococcus horikoshii]
Length = 381
Score = 100 bits (246), Expect = 3e-20
Identities = 104/380 (27%), Positives = 171/380 (44%), Gaps = 55/380 (14%)
Query: 1 MRILMVGH-YPPHRGGVARHLKEVVERLRRR-HSVDVLTYGTVATDVYSVKVPNV--FGL 56
M+I +V Y P GGVA H+ + +LR R H V ++T +K + +
Sbjct: 4 MKIALVSDWYYPKIGGVATHMHNLAIKLRERGHEVGIVTNNRPTGKEEELKRYGIELIKI 63
Query: 57 RGISFSFL------ASKKIVELHEE-RNYDLIHAHYVGTT-SFAGVLAKRKLGIPLVVTA 108
GI FL K EL+E +++D+IH+H+ T S + A + + ++T
Sbjct: 64 PGIISPFLDVNLTYGLKSSEELNEFLKDFDIIHSHHAFTPLSLKALKAGKNMEKGTLLTT 123
Query: 109 HGSDLEFMSKL--------PLGRYFVKASLREADAVTAVSHFLAKRAISLGAKSVEVISN 160
H SKL PL + ++K S R + AVS + V ++ N
Sbjct: 124 HSISFAHESKLWDTLGFTIPLFKSYLKYSHR----IIAVSKAAKSFIEHFTSVPVLIVPN 179
Query: 161 GV-------STCGDRVSKKY------IVFLGKVSKYKGIDEFLELARRFPELEFLIAGEG 207
GV + +++ K+ ++++ ++S KG L + + ++ G G
Sbjct: 180 GVDDERFFPARDKEKIKAKFGLEGNVVLYVSRMSYRKGPHVLLNAFSKIEDATLVMVGNG 239
Query: 208 NLRE-LPSNVKFLGYVN--------PDDVLSRALAL----VLPS-KREGFGMVILEANSF 253
+ L + KFLG N PDD+L + VLPS E FG+VILEA +
Sbjct: 240 EMLPFLKAQTKFLGIENKVVFMGYVPDDILPEVFRMADVFVLPSISSEAFGIVILEAMAS 299
Query: 254 SVPALGRKVGGIPELIRDGKNGFLFDSIDE---AEKFLRVLLDLKVNAKVGALGKR-VAS 309
VP + VGGIPE+I++ G L +E E ++L + ++ G G+R V
Sbjct: 300 GVPIIATDVGGIPEVIKENSAGLLVPPGNELKLREAIEKLLKNEELRKWYGNNGRRSVEE 359
Query: 310 LYSWDDVAIRYERLYRRVLE 329
YSW+ + ++ ER+Y VL+
Sbjct: 360 KYSWNKIVVKIERIYNEVLQ 379
>sp|P42982|YPJH_BACSU HYPOTHETICAL 42.0 KDA PROTEIN IN DAPB-PAPS INTERGENIC REGION
>gi|7475602|pir||G69937 lipopolysaccharide
biosynthesis-related pr homolog ypjH - Bacillus subtilis
>gi|1146237|gb|AAB38445.1| (L47709) 21.4% of identity to
trans-acting transcription factor of Sacharomyces
cerevisiae; 25% of identity to sucrose synthase of Zea
mays; putative [Bacillus subtilis]
>gi|2634664|emb|CAB14162.1| (Z99115) alternate gene
name: jojH~similar to lipopolysaccharide
biosynthesis-related protein [Bacillus subtilis]
Length = 377
Score = 98.7 bits (242), Expect = 8e-20
Identities = 81/305 (26%), Positives = 139/305 (45%), Gaps = 36/305 (11%)
Query: 61 FSFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKL--GIPLVVTAHGSDLEFMSK 118
+ + KI E+ E N D+IHAHY + LAK+ L I +V T HG+D+ +
Sbjct: 71 YDLTLASKIAEVAERENLDIIHAHYALPHAVCAYLAKQMLKRNIGIVTTLHGTDITVLGY 130
Query: 119 LPLGRYFVKASLREADAVTAVSHFLAKRAISL--GAKSVEVISNGVSTC----------- 165
P + ++ ++ +D VTAVS LA L K +E I N +
Sbjct: 131 DPSLKDLIRFAIESSDRVTAVSSALAAETYDLIKPEKKIETIYNFIDERVYLKKNTAAIK 190
Query: 166 ---GDRVSKKYIVFLGKVSKYKGIDEFLELARRFP---ELEFLIAGEGNLRE-------- 211
G +K ++ + K K + + + + R + + L+ G+G +
Sbjct: 191 EKHGILPDEKVVIHVSNFRKVKRVQDVIRVFRNIAGKTKAKLLLVGDGPEKSTACELIRK 250
Query: 212 --LPSNVKFLGYVNP-DDVLSRALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPEL 268
L V LG + +D+ S + +L S++E FG+V+LEA + VP +G +GGIPE+
Sbjct: 251 YGLEDQVLMLGNQDRVEDLYSISDLKLLLSEKESFGLVLLEAMACGVPCIGTNIGGIPEV 310
Query: 269 IRDGKNGFLFDSIDEAEKFLRVLLDLK----VNAKVGALGKRVASLYSWDDVAIRYERLY 324
I++ +GFL D D R + L+ N A + + + +S + +YE++Y
Sbjct: 311 IKNNVSGFLVDVGDVTAATARAMSILEDEQLSNRFTKAAIEMLENEFSSKKIVSQYEQIY 370
Query: 325 RRVLE 329
+ E
Sbjct: 371 ADLAE 375
>gb|AAA92877.1| (L38424) unknown [Bacillus subtilis]
Length = 357
Score = 98.7 bits (242), Expect = 8e-20
Identities = 81/305 (26%), Positives = 139/305 (45%), Gaps = 36/305 (11%)
Query: 61 FSFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKL--GIPLVVTAHGSDLEFMSK 118
+ + KI E+ E N D+IHAHY + LAK+ L I +V T HG+D+ +
Sbjct: 51 YDLTLASKIAEVAERENLDIIHAHYALPHAVCAYLAKQMLKRNIGIVTTLHGTDITVLGY 110
Query: 119 LPLGRYFVKASLREADAVTAVSHFLAKRAISL--GAKSVEVISNGVSTC----------- 165
P + ++ ++ +D VTAVS LA L K +E I N +
Sbjct: 111 DPSLKDLIRFAIESSDRVTAVSSALAAETYDLIKPEKKIETIYNFIDERVYLKKNTAAIK 170
Query: 166 ---GDRVSKKYIVFLGKVSKYKGIDEFLELARRFP---ELEFLIAGEGNLRE-------- 211
G +K ++ + K K + + + + R + + L+ G+G +
Sbjct: 171 EKHGILPDEKVVIHVSNFRKVKRVQDVIRVFRNIAGKTKAKLLLVGDGPEKSTACELIRK 230
Query: 212 --LPSNVKFLGYVNP-DDVLSRALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPEL 268
L V LG + +D+ S + +L S++E FG+V+LEA + VP +G +GGIPE+
Sbjct: 231 YGLEDQVLMLGNQDRVEDLYSISDLKLLLSEKESFGLVLLEAMACGVPCIGTNIGGIPEV 290
Query: 269 IRDGKNGFLFDSIDEAEKFLRVLLDLK----VNAKVGALGKRVASLYSWDDVAIRYERLY 324
I++ +GFL D D R + L+ N A + + + +S + +YE++Y
Sbjct: 291 IKNNVSGFLVDVGDVTAATARAMSILEDEQLSNRFTKAAIEMLENEFSSKKIVSQYEQIY 350
Query: 325 RRVLE 329
+ E
Sbjct: 351 ADLAE 355
>gb|AAB84956.1| (AE000829) LPS biosynthesis RfbU related protein [Methanobacterium
thermoautotrophicum]
Length = 411
Score = 98.3 bits (241), Expect = 1e-19
Identities = 88/290 (30%), Positives = 137/290 (46%), Gaps = 41/290 (14%)
Query: 78 YDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMS-KLPLGRYFVKASLREADAV 136
+D+IHAHY+ T F G+L G PLVVT HGSD+ ++ K L LR AV
Sbjct: 122 FDVIHAHYLFPTGFIGLLCHWISGKPLVVTVHGSDVNKLARKNSLLSKISGFILRRTSAV 181
Query: 137 TAVSHFLAKRAIS---LGAKSVEVISNGVST----------CGDRVSK----KYIVFLGK 179
AVS L ++ ++ + V VI+ GV T C +R+ + ++F+G
Sbjct: 182 IAVSRDLGEKVVNEFGVDRGKVHVINMGVDTDIFMPLDRDECRERLGLPLKGRVVLFVGN 241
Query: 180 VSKYKGIDEFLELARRFP-------------ELEFLIAGEGNLRELPSNVKFLGYVNPDD 226
+ KG+ +E + + E+L G + S+V+F G V +
Sbjct: 242 IIPSKGVYYLIESLKDLELDDVKCIILGAPVDEEYLRTLRGLAESMDSDVEFFGPVPYTE 301
Query: 227 V---LSRALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFLF---DS 280
V ++ A VLPS EGFG+V LEA + P + GGI E +RD + G+ DS
Sbjct: 302 VPTWMNAADVFVLPSLEEGFGLVALEALACGTPVIATATGGIMEFVRDSETGYTVPPGDS 361
Query: 281 IDEAEKFLRVLLDLKVNAKVGAL---GKRVASLYSWDDVAIRYERLYRRV 327
A++ R+ LD + A+V ++ G R+A +S + +YR+V
Sbjct: 362 RAIADRIKRI-LDPENRAEVESMRERGMRLAESFSTIKQIEKVLEVYRQV 410
>pir||H69158 LPS biosynthesis RfbU related protein - Methanobacterium
thermoautotrophicum (strain Delta H)
Length = 411
Score = 98.3 bits (241), Expect = 1e-19
Identities = 88/290 (30%), Positives = 137/290 (46%), Gaps = 41/290 (14%)
Query: 78 YDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMS-KLPLGRYFVKASLREADAV 136
+D+IHAHY+ T F G+L G PLVVT HGSD+ ++ K L LR AV
Sbjct: 122 FDVIHAHYLFPTGFIGLLCHWISGKPLVVTVHGSDVNKLARKNSLLSKISGFILRRTSAV 181
Query: 137 TAVSHFLAKRAIS---LGAKSVEVISNGVST----------CGDRVSK----KYIVFLGK 179
AVS L ++ ++ + V VI+ GV T C +R+ + ++F+G
Sbjct: 182 IAVSRDLGEKVVNEFGVDRGKVHVINMGVDTDIFMPLDRDECRERLGLPLKGRVVLFVGN 241
Query: 180 VSKYKGIDEFLELARRFP-------------ELEFLIAGEGNLRELPSNVKFLGYVNPDD 226
+ KG+ +E + + E+L G + S+V+F G V +
Sbjct: 242 IIPSKGVYYLIESLKDLELDDVKCIILGAPVDEEYLRTLRGLAESMDSDVEFFGPVPYTE 301
Query: 227 V---LSRALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFLF---DS 280
V ++ A VLPS EGFG+V LEA + P + GGI E +RD + G+ DS
Sbjct: 302 VPTWMNAADVFVLPSLEEGFGLVALEALACGTPVIATATGGIMEFVRDSETGYTVPPGDS 361
Query: 281 IDEAEKFLRVLLDLKVNAKVGAL---GKRVASLYSWDDVAIRYERLYRRV 327
A++ R+ LD + A+V ++ G R+A +S + +YR+V
Sbjct: 362 RAIADRIKRI-LDPENRAEVESMRERGMRLAESFSTIKQIEKVLEVYRQV 410
>emb|CAB50741.1| (AJ243803) putative glycosyl transferase [Streptomyces coelicolor
A3(2)] >gi|6522847|emb|CAB61928.1| (AL133278) putative
glycosyl transferase [Streptomyces coelicolor A3(2)]
Length = 387
Score = 96.7 bits (237), Expect = 3e-19
Identities = 112/389 (28%), Positives = 168/389 (42%), Gaps = 62/389 (15%)
Query: 1 MRI-LMVGHYPPH-RGGVARHLKEVVERLRRRHSVDVLTYGTVATDVYSVKVP--NVFGL 56
MR+ L+ +PP GG H++ + L R +DV ++G TD P + G
Sbjct: 1 MRVGLLSREFPPDVYGGAGVHVEFLARELARLVDLDVHSWGEGRTDGVLRHRPWSALDGA 60
Query: 57 RGISFSFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDL--- 113
+F + E R +L+H+H + G LAK G+P VVTAH +
Sbjct: 61 NDALRTFSVDLAMTAALEGR--ELVHSH-TWYANLGGHLAKLLHGVPHVVTAHSLEPLRP 117
Query: 114 ----EFMSKLPLGRYFVKASLREADAVTAVSHFLAKRAIS----LGAKSVEVISNGVST- 164
+ L + + + ADAV AVS + + + L A V V+ NG+ T
Sbjct: 118 WKAEQLGGGYELSGWAERTAFEAADAVIAVSGAMREDILGCYPDLDASRVHVVHNGIDTR 177
Query: 165 ---------CGDRV----SKKYIVFLGKVSKYKGIDEFLELARRF--------------- 196
DRV S+ Y++F+G++++ KG+ + L R
Sbjct: 178 LYRPDHGTDVLDRVGLDRSRPYVLFVGRITRQKGVPQLLRAVRDIDPAAQVVLCAGAPDT 237
Query: 197 PEL--EF--LIAGEGNLRELPSNV-KFLGYVNPDDVLSRALALVLPSKREGFGMVILEAN 251
PE+ EF L AG RE + + L +L+ A V PS E G+V LEA
Sbjct: 238 PEIDQEFRDLFAGLSRAREGVHWIPRMLPRTEVIQLLTHAAVFVCPSVYEPLGIVNLEAM 297
Query: 252 SFSVPALGRKVGGIPELIRDGKNGFLF---DSIDEA-EKFLRVLLDLKVNAKVGA--LGK 305
+ P + +VGGIPE++ DG G L D D+A E L LD + GA +G+
Sbjct: 298 ACGTPVVASRVGGIPEVVTDGVTGVLVPREDGADDAFEAGLARALDSVLGDPAGARRMGE 357
Query: 306 ----RVASLYSWDDVAIRYERLYRRVLER 330
R + WD VA R RLY +L++
Sbjct: 358 AGRARAVEEFGWDAVARRTVRLYEEILKQ 386
>gi|11499317 galactosyltransferase [Archaeoglobus fulgidus]
>gi|7433881|pir||G69465 probable hexosyltransferase (EC
2.4.1.-) AF1728 - Archaeoglobus fulgidus
>gi|2648819|gb|AAB89517.1| (AE000983)
galactosyltransferase [Archaeoglobus fulgidus]
Length = 356
Score = 96.0 bits (235), Expect = 6e-19
Identities = 104/363 (28%), Positives = 166/363 (45%), Gaps = 47/363 (12%)
Query: 3 ILMVGHYPPHRGGVARHLKEVVERLRRR-HSVDVLTYGTVATDVYSVKVPNVFGLRGISF 61
+L+ ++PPH GGV H++ + L RR V V+T + + +V V + I +
Sbjct: 4 VLLSSYFPPHIGGVEVHVERIAHHLHRRGFEVVVVTSTASGREKFPFRVEYVPSI-PIPY 62
Query: 62 SFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMSK--- 118
S + + + E+ + D+ H+H F+ L K P V+T H D+E K
Sbjct: 63 SPI-TPFLGRFLEKIDGDIFHSH-TPPPFFSCSLRKS----PHVITYH-CDIEIPEKYGR 115
Query: 119 LPLGRYFVKASLR-----------EADAVTAVSHFLAKRAISLGAKSVEVISNGVSTC-- 165
P+ R K +R ADA+ A + A+ + L + VI NG+
Sbjct: 116 FPIPRALSKLIIRRTDDMLSEALDRADAIVATTKSYAETSRLLAGRDYHVIPNGIELSEF 175
Query: 166 -GDRVSKK-YIVFLGKVSKYKGIDEFLELARRFP-ELEFLIAGEGN--------LRELPS 214
G K+ ++FLG+++ KG+D L+ + E +I G+G REL
Sbjct: 176 EGVEAEKEPTVLFLGRLAATKGVDVLLKAMKHVDVEARCVIIGDGEERSSLERLARELEV 235
Query: 215 NVKFLGYVNPDDV---LSRALALVLP--SKREGFGMVILEANSFSVPALGRKVGGIPELI 269
N +F G++ V LSRA LVLP S+ E FG+V+LEA + P + G+ ++
Sbjct: 236 NAEFTGFLPRKKVIEYLSRASLLVLPSLSRLEAFGIVLLEAMACGTPVAASDLPGVRDVA 295
Query: 270 RDGKNGFLF---DSIDEAEKFLRVLLDLKVNAKVGALGKR-VASLYSWDDVAIRYERLYR 325
+ GF+F D + +E VL D + +G G+R V YSWD V RLY
Sbjct: 296 SEA--GFVFPPGDYMRLSEIINEVLSDERKVKAIGESGRRIVREKYSWDVVVKSLIRLYE 353
Query: 326 RVL 328
++
Sbjct: 354 SLI 356
>dbj|BAB05134.1| (AP001512) unknown conserved protein in others [Bacillus
halodurans]
Length = 923
Score = 96.0 bits (235), Expect = 6e-19
Identities = 98/381 (25%), Positives = 172/381 (44%), Gaps = 54/381 (14%)
Query: 3 ILMVGHYPPHR-GGVARHLKEVVERLRRR-HSVDVLTYGTVATDVYS----VKVPNVFGL 56
+++ YPPH GG++RH+ + + L ++ H + V+T Y V + V GL
Sbjct: 540 LMLSWEYPPHVVGGLSRHVDALSQALAKKGHEIHVVTAAMDGAPEYEKNGEVHIHRVSGL 599
Query: 57 RG---------ISFSFLASKKIVELHEERNYDLIHAH---YVGTTSFAGVLAKRKLGIPL 104
+ S + + + +L+ R +D+IHAH G L + L +
Sbjct: 600 QPEREPFLDWVASLNLAMFEHVKKLYRFRPFDVIHAHDWLVSGAALALKHLFQTSLMATI 659
Query: 105 VVTAHGSDLEFMSKLPLGRYFVKASL-READAVTAVSHFLAKRAISL---GAKSVEVISN 160
T HG + ++L + + L EAD + S F+ + SL V VI+N
Sbjct: 660 HATEHGRNQGIHTELQQAIHEQEMKLVTEADQIIVCSQFMKEHVQSLFVPNPDKVAVIAN 719
Query: 161 GVSTCGDRVSK--------KYIVF-LGKVSKYKGIDEFLELARRFPEL----EFLIAGEG 207
GV+ ++ ++IVF +G++ + KG +E A + EL +F++AG G
Sbjct: 720 GVAREQIEAARLQTISPENRFIVFSVGRIVQEKGFSLLIEAAAKCKELGEPIQFVVAGHG 779
Query: 208 NL----------RELPSNVKFLGYVNP---DDVLSRALALVLPSKREGFGMVILEANSFS 254
L R L + + F+GY++ ++ RA + PS E FG+V LEA +
Sbjct: 780 PLLADYQQQVKERHLEAWISFVGYISDSERNEWYHRADVCIFPSLYEPFGIVALEAMAAG 839
Query: 255 VPALGRKVGGIPELIRDGKNGFLFDSIDEAEKFLRVLLDL----KVNAKVGALGKR-VAS 309
P + GG+ E++ G NG + D + + LL L + A++G G + V
Sbjct: 840 TPTIVSDTGGLAEIVEHGDNGLKVPTGD-VDAIVAQLLSLYHKPLLRAQIGFKGSQDVIE 898
Query: 310 LYSWDDVAIRYERLYRRVLER 330
YSW+ +A + E + + ++R
Sbjct: 899 QYSWETIADQTEAILVKKMKR 919
>pir||F64500 probable hexosyltransferase (EC 2.4.1.-) MJ1607 - Methanococcus
jannaschii >gi|1500505|gb|AAB99629.1| (U67601) LPS
biosynthesis protein, putative [Methanococcus
jannaschii]
Length = 390
Score = 94.4 bits (231), Expect = 2e-18
Identities = 113/390 (28%), Positives = 171/390 (42%), Gaps = 65/390 (16%)
Query: 1 MRILMVG-HYPPHR-GGVARHLKEVVERL-RRRHSVDVLTYGTVATDVYSVKVPNVFGLR 57
M+I MV YPP GG+A H K + E L R H VDV+T G + ++ NV+ +R
Sbjct: 1 MKIAMVTWEYPPRIVGGLAIHCKGLAEGLVRNGHEVDVITVGYDLPEYENINGVNVYRVR 60
Query: 58 GISFS-------FLAS---KKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVT 107
IS F+A KK+ L ++ YD+IH H T F G K +P V +
Sbjct: 61 PISHPHFLTWAMFMAEEMEKKLGILGVDK-YDVIHCHD-WMTHFVGANLKHICRMPYVQS 118
Query: 108 AHGSDLE-----FMSKLPLGRYFVKASLREADAVTAVSHFLAKRAISL---GAKSVEVIS 159
H +++ + S E+ V VS L + S+ V+VI
Sbjct: 119 IHSTEIGRCGGLYSDDSKAIHAMEYLSTYESCQVITVSKSLKEEVCSIFNTPEDKVKVIY 178
Query: 160 NGVS------------------TCGDRVSKKYIVFLGKVSKYKGIDEFLELARRFPE--- 198
NG++ + G + +K I+F+G+++ KGI+ + + E
Sbjct: 179 NGINPWEFDINLSWEEKINFRRSIGVQDDEKMILFVGRLTYQKGIEYLIRAMPKILERHN 238
Query: 199 LEFLIAGEGNLRE----------LPSNVKFLGYVNPDDV---LSRALALVLPSKREGFGM 245
+ +IAG G++R+ + V FLG+VN D + A +V+PS E FG+
Sbjct: 239 AKLVIAGSGDMRDYLEDLCYQLGVRHKVVFLGFVNGDTLKKLYKSADVVVIPSVYEPFGI 298
Query: 246 VILEANSFSVPALGRKVGGIPELIRDGKNGFLF-----DSIDEAEKFLRVLLDLKVNAK- 299
V LEA + P + VGG+ E+I+ NG DSI A RVL D
Sbjct: 299 VALEAMAAGTPVVVSSVGGLMEIIKHEVNGIWVYPKNPDSI--AWGVDRVLSDWGFREYI 356
Query: 300 VGALGKRVASLYSWDDVAIRYERLYRRVLE 329
V K V YSWD++A +Y+ +E
Sbjct: 357 VNNAKKDVYEKYSWDNIAKETVNVYKIAME 386
>gi|11498225 LPS biosynthesis protein, putative [Archaeoglobus fulgidus]
>gi|7483856|pir||A69327 probable hexosyltransferase (EC
2.4.1.-) AF0617 - Archaeoglobus fulgidus
>gi|2650003|gb|AAB90623.1| (AE001062) LPS biosynthesis
protein, putative [Archaeoglobus fulgidus]
Length = 358
Score = 92.8 bits (227), Expect = 5e-18
Identities = 95/355 (26%), Positives = 153/355 (42%), Gaps = 53/355 (14%)
Query: 11 PHRGGVARHLKEVVERLRRRHSVDVLTYGTVATDVYS--VKVPNVFGLRGISFSFLASKK 68
PH GGV H+ E+ R+ ++ V+VLT TD KV + GL F LA +
Sbjct: 12 PHIGGVETHVYEIASRIAKKFDVEVLT-----TDPGGKLPKVEEIDGLTVRRFKSLAPSE 66
Query: 69 IV----ELHE-----ERNYDLIHAH-YVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMSK 118
EL++ +YD++HAH Y + L K K + HGS F
Sbjct: 67 AYYFSPELYDYLKKNSSDYDVVHAHNYHAFPALFAALTKGKNKLIFTPHYHGSGHSFFRN 126
Query: 119 LPLGRY--FVKASLREADAVTAVSHF---LAKRAISLGAKSVEVISNGVS---------- 163
+ Y F + + ADA+ VS++ L + + VI NG++
Sbjct: 127 VLHKPYKIFGRKIFKRADAIVCVSNYEKNLVLKNFKVAEDRTYVIPNGINLDEFKDIEKI 186
Query: 164 TCGDRVSKKYIVFLGKVSKYKGIDEFLELARRFPE-LEFLIAGEGNLR----------EL 212
KK I+++G+V KYKG+D ++ + P+ + G+G+ + ++
Sbjct: 187 KRNKESWKKTILYVGRVEKYKGLDYVVKSLKHLPDNFTLEVVGKGSYKSKIVEMAKKLDV 246
Query: 213 PSNVKFLGYVNPDDVLSR---ALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELI 269
++F ++ +++ R A LVL SK E +G+V+ EA + P + + E I
Sbjct: 247 IDRIRFYQDLSRKELIDRYAKADVLVLLSKHEAYGIVVAEALAAKTPCIVANTSALSEWI 306
Query: 270 RDGKNGFLFDSIDEAEKFLRVLLDLKVNAKVGALGKRVASLYSWDDVAIRYERLY 324
D KN F D + R L++ N K G + L WDDV R R+Y
Sbjct: 307 -DNKNVFGIDYPINVSELAR-LIERVSNVKAGDM-----KLLDWDDVNERLIRIY 354
>pir||T40367 n-acetylglucosaminyl-phosphatidylinositol - fission yeast
(Schizosaccharomyces pombe) >gi|2117303|emb|CAB09127.1|
(Z95620) n-acetylglucosaminyl-phosphatidylinositol
[Schizosaccharomyces pombe]
Length = 456
Score = 89.3 bits (218), Expect = 5e-17
Identities = 100/359 (27%), Positives = 157/359 (42%), Gaps = 49/359 (13%)
Query: 11 PHRGGVARHLKEVVERL-RRRHSVDVLT----------YGTVATDVYSVKVPNVFGLRGI 59
P GG+ H+ ++ +RL H V V+T Y T VY V + V+
Sbjct: 8 PQPGGIESHIFQLSQRLIDLGHKVIVITHAYKDRVGVRYLTNGLTVYYVPLHTVYRETTF 67
Query: 60 S--FSFLASKKIVELHEERNYDLIHAHYVGTTSFA---GVLAKRKLGIPLVVTAHGSDLE 114
FSF + + + E N +++H H G+ SF +L R +G+ T H
Sbjct: 68 PSFFSFFPIFRNIVIRE--NIEIVHGH--GSLSFLCHDAILHARTMGLKTCFTDHSLFGF 123
Query: 115 FMSKLPLGRYFVKASLREADAVTAVSHFLAKRAIS---LGAKSVEVISNGVSTCG----- 166
+ + +K ++ + + V VSH + + L K V VI N +
Sbjct: 124 ADAGSIVTNKLLKFTMSDVNHVICVSHTCRENTVLRAVLNPKRVSVIPNALVAENFQPDP 183
Query: 167 DRVSKKY--IVFLGKVSKYKGIDEFLELARRF----PELEFLIAGEG-------NLRE-- 211
+ SK + IV + ++ KGID + + R P++ F+IAG+G +RE
Sbjct: 184 SKASKDFLTIVVISRLYYNKGIDLLIAVIPRICAQHPKVRFVIAGDGPKSIDLEQMREKY 243
Query: 212 -LPSNVKFLGYVNPD---DVLSRALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPE 267
L V+ LG V D DV+ R + PS E FG V++EA S + + KVGG+PE
Sbjct: 244 MLQDRVEMLGSVRHDQVRDVMVRGHIYLHPSLTEAFGTVLVEAASCGLYVISTKVGGVPE 303
Query: 268 LIRDGKNGFLFDSIDE-AEKFLRVLLD-LKVNAKVGALGKRVASLYSWDDVAIRYERLY 324
++ F D+ A+ V+ D L K + V +YSW DVA R E++Y
Sbjct: 304 VLPSHMTRFARPEEDDLADTLSSVITDYLDHKIKTETFHEEVKQMYSWIDVAERTEKVY 362
>pir||E75381 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6459318|gb|AAF11118.1|AE001999_2 (AE001999)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 411
Score = 88.9 bits (217), Expect = 7e-17
Identities = 84/300 (28%), Positives = 136/300 (45%), Gaps = 34/300 (11%)
Query: 65 ASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTA-HGSDLEFMSKLPLGR 123
A+ + E+ E DL HAHY + A + A+ G V+T HG+D+ + P +
Sbjct: 107 AANTLSEVILEHGVDLTHAHYAIPHASAALHARSITGKTRVLTTLHGTDVTLVGTEPAFQ 166
Query: 124 YFVKASLREADAVTAVSHFLAK--RAISLGAKSVEVISN-------------GVSTCGDR 168
+ + ++ +D VTAVSH LA R + + +EVI N GV
Sbjct: 167 HTTRHAIERSDHVTAVSHSLAAETREVFGVDRDIEVIHNFVDSDRFRRIPDPGVRARFAH 226
Query: 169 VSKKYIVFLGKVSKYKGIDEFLELARRFPE---LEFLIAGEGN--------LRELP--SN 215
+ IV + K +++ +++ R L+ G+G REL
Sbjct: 227 PEEALIVHVSNFRPIKRVEDVVQVFARIASEIPARLLMIGDGPERARAFELARELGVIGR 286
Query: 216 VKFLG-YVNPDDVLSRALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKN 274
+FLG + + VL + +L S E FG+ LEA S VP + GGIPE+++ G N
Sbjct: 287 TQFLGSFPDVQTVLGISDLFLLTSSHESFGLAALEAMSCEVPVVASNAGGIPEVVQHGVN 346
Query: 275 GFLFD--SIDE-AEKFLRVLLDLKVNAKVGALGKRVA-SLYSWDDVAIRYERLYRRVLER 330
GFL D +D+ A L++L D + ++G +R A + + +Y YRR+ E+
Sbjct: 347 GFLSDVGDVDDMAHHALKILRDQETYQQMGQAARRTAVEQFHPRLIVPQYLAAYRRLAEQ 406
>pir||C72354 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981140|gb|AAD35704.1|AE001736_2 (AE001736)
conserved hypothetical protein [Thermotoga maritima]
Length = 397
Score = 88.2 bits (215), Expect = 1e-16
Identities = 102/357 (28%), Positives = 160/357 (44%), Gaps = 58/357 (16%)
Query: 20 LKEVVERLRRRHS-------VDVLTYGTVATDVYSVKVPNVFGLRGISFSFLAS---KKI 69
+ ++E+L R HS V+ + + V+ ++ +++ +GL F+ L K I
Sbjct: 48 IASLLEKLLRGHSNKKTLEEVENVKFYPVSIEINLLRLIK-YGLLRNYFTVLCKEYKKMI 106
Query: 70 VELHEERNYDLIHAHYVGTTSFAGVLAK---RKLGIPLVVTAHGSDLEFMSKLPLGRYFV 126
E YDLIHAH + + AG+ AK K P +VT HGSD+ +P +
Sbjct: 107 EEAFNLNEYDLIHAHGMYSVP-AGLTAKILAEKYRKPFIVTLHGSDVNLF--MPHRKEIY 163
Query: 127 KASLREADAVTAVSHFLAKRAISLG--AKSVEVISNGVSTCG---------------DRV 169
+ L A A VS L ++A SLG K+ VI NG R
Sbjct: 164 VSILESASATIFVSKALLEKAKSLGFSGKNAVVIPNGYDETIFKPMDKEAVRKELGIHRE 223
Query: 170 SKKYIVFLGKVSKYKGIDEFLEL----ARRFPELEFLIAGEGNLRELPS------NVKFL 219
KY+ F+G + K D+ E+ A+ PE F+I G+G LR+ N+ F
Sbjct: 224 GYKYVGFVGNLIPIKRADKLGEIFHLIAKEIPETFFIIVGDGPLRKKIEKETKGLNIIFT 283
Query: 220 GYVNPDDVLSRALAL---VLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGF 276
G + DV A+ VLPS+ EG+ VILEA + +G GIPE I GF
Sbjct: 284 GRLPQKDVAKYMNAMDVMVLPSRNEGWPCVILEAQACGTCVIGSSNRGIPEAI-----GF 338
Query: 277 LFDSIDEAEKF-----LRVLLDLKVNAKVGALGKRVASLYSWDDVAIRYERLYRRVL 328
++E ++F RV+ L V + +R A ++W ++ + +++RV+
Sbjct: 339 PEYVVEEGDQFEERFARRVVEVLNEGYDVNRILER-AKGFTWRNIVEKEIDVHKRVV 394
>pir||B70610 hypothetical protein Rv1212c - Mycobacterium tuberculosis (strain
H37RV) >gi|1929086|emb|CAB07814.1| (Z93777) hypothetical
protein Rv1212c [Mycobacterium tuberculosis]
Length = 387
Score = 86.2 bits (210), Expect = 5e-16
Identities = 105/389 (26%), Positives = 164/389 (41%), Gaps = 66/389 (16%)
Query: 1 MRILMVGH-YPPH-RGGVARHLKEVVERLRRRHSVDVLTYGTVATDVYSVKVPNVFGLRG 58
MR+ M+ YPP GG H+ E+V LRR +VDV G ++ + G
Sbjct: 1 MRVAMLTREYPPEVYGGAGVHVTELVAYLRRLCAVDVHCMGAPRPGAFAYRPDPRLGSAN 60
Query: 59 ISFSFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSD-LEFMS 117
+ S L S +V + ++H+H T+ AG LA IP V+TAH + L
Sbjct: 61 AALSTL-SADLVMANAASAATVVHSH-TWYTALAGHLAAILYDIPHVLTAHSLEPLRPWK 118
Query: 118 KLPLG------RYFVKASLREADAVTAVSHFLAKRAI----SLGAKSVEVISNGVST--- 164
K LG + + ++ A+AV AVS + + SL V VI NG+ T
Sbjct: 119 KEQLGGGYQVSTWVEQTAVLAANAVIAVSSAMRNDMLRVYPSLDPNLVHVIRNGIDTETW 178
Query: 165 --------------CGDRVSKKYIVFLGKVSKYKGIDEFLELARRFPELEFLI--AGEGN 208
G ++ VF+G++++ KG+ + A RF L+ AG +
Sbjct: 179 YPAGPARTGSVLAELGVDPNRPMAVFVGRITRQKGVVHLVTAAHRFRSDVQLVLCAGAAD 238
Query: 209 LRELPSNVKF--------------------LGYVNPDDVLSRALALVLPSKREGFGMVIL 248
E+ V+ +G + ++LS A V PS E G+V L
Sbjct: 239 TPEVADEVRVAVAELARNRTGVFWIQDRLTIGQLR--EILSAATVFVCPSVYEPLGIVNL 296
Query: 249 EANSFSVPALGRKVGGIPELIRDGKNGFL--FDSIDE-------AEKFLRVLLDLKVNAK 299
EA + + + VGGIPE++ DG G L +D+ D AE ++ D +
Sbjct: 297 EAMACATAVVASDVGGIPEVVADGITGSLVHYDADDATGYQARLAEAVNALVADPATAER 356
Query: 300 VGALGK-RVASLYSWDDVAIRYERLYRRV 327
G G+ R +SW +A + +YR+V
Sbjct: 357 YGHAGRQRCIQEFSWAYIAEQTLDIYRKV 385
>pir||S76126 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001478|dbj|BAA10104.1| (D63999) hypothetical
protein [Synechocystis sp.]
Length = 409
Score = 83.9 bits (204), Expect = 2e-15
Identities = 79/316 (25%), Positives = 136/316 (43%), Gaps = 37/316 (11%)
Query: 1 MRI-LMVGHYPPHRGGVARHLKEVVERLRRR-HSVDVLTYGTVATDVYSVKVPNVFGLRG 58
MR+ L + P G+ LK VE L+R+ H V V + K+ V G+
Sbjct: 32 MRVALFTETFLPKIDGIVTRLKHTVENLQRQGHQVLVFCPEGGLKEYKGAKIHGVKGMPL 91
Query: 59 ISFSFLA----SKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLE 114
+ L S +I + + DLIH G+ + L IPLV + H +
Sbjct: 92 PLYPELKLAFPSPQIKQALLKFQPDLIHVVNPAVLGLGGIYYAKNLHIPLVASYHTHLPQ 151
Query: 115 FMSKLPLGRY------FVKASLREADAVTAVSHFLAKRAISLGAKSVEVISNGVST---- 164
++ LG +K + +A+ S + + ++ G + V++ GV T
Sbjct: 152 YLQHYGLGALEGVLWELLKLAHNQAELNLCTSSAMVQELVNHGIERVDLWQRGVDTELFQ 211
Query: 165 -------CGDRVSKKY-----IVFLGKVSKYKGIDEFLELARRFPELEFLIAGEGNLRE- 211
++S+ + +++G+VS K IDE + P+ I G+G R+
Sbjct: 212 PHLKSAQMRQKLSQGHPDDPLFLYVGRVSAEKQIDEIKPVLEAIPQARLAIVGDGPNRKN 271
Query: 212 -----LPSNVKFLGYVNPDDV---LSRALALVLPSKREGFGMVILEANSFSVPALGRKVG 263
+N F GY+ ++ + A A + PS+ E G+V+LEA + P + G
Sbjct: 272 LEAHFAGTNTYFAGYMQGLELAAAFASADAFIFPSRTETLGLVLLEAMAAGCPVVAAASG 331
Query: 264 GIPELIRDGKNGFLFD 279
GI +++ DG+NG+LFD
Sbjct: 332 GILDIVTDGENGYLFD 347
>pir||F69142 probable hexosyltransferase (EC 2.4.1.-) MTH332 [similarity] -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621388|gb|AAB84838.1| (AE000818) LPS biosynthesis
RfbU related protein [Methanobacterium
thermoautotrophicum]
Length = 400
Score = 83.5 bits (203), Expect = 3e-15
Identities = 103/379 (27%), Positives = 169/379 (44%), Gaps = 54/379 (14%)
Query: 1 MRILMV--GHYPPHRGGVARHLKEVVERLRRR-HSVDVLTYG---------TVATD---V 45
MRI V G YP +GGV + + E+ RL R H V G T+ D
Sbjct: 26 MRIAFVYDGAYPWIKGGVEKRVYEIGRRLAERGHDVHWYCVGWWLPDNGERTIEIDGIKY 85
Query: 46 YSVKVP---NVFGLRGISFSFLASKKIVELHEERNYDLIHAHYVGTTS-FAGVLAK--RK 99
++V P V G R I + S + +D+I S F+ LA K
Sbjct: 86 HAVCEPLEIYVNGRRSIKAAIKFSISLTRPLLREKFDIIDCQQFPYFSCFSAKLASLVNK 145
Query: 100 LGIPLVVTAHGSDL--EFMSKLPL-GRYFVKASLR-EADAVTAVSHFLAKRAISLGAKSV 155
+ + V + D E++ K+ + G+ + + +D +T SH + +S S+
Sbjct: 146 SSLIITVLEYWGDYWYEYLGKVGIFGKIVERLTFNLTSDYITISSH--VRNYLSFCKDSI 203
Query: 156 EVISNGVSTCGDRV-----SKKYIVFLGKVSKYKGIDEFLELARRFPE----LEFLIAGE 206
++ +GV R K ++F+G++ K+K +D L+ + L +I G+
Sbjct: 204 HIVPDGVPFNKIRKIKPSSEKANLIFVGRLIKHKNVDVLLKALHLLRDDGFKLTCIIIGD 263
Query: 207 GNLRE----------LPSNVKFLGYVNPDDVLSRALA----LVLPSKREGFGMVILEANS 252
G +E L + VKF+G V DD + + + V PS REG G+V LEAN+
Sbjct: 264 GPEKENLMKITRDLGLEAQVKFMGRVPSDDEVYKYMKSCNIFVFPSSREGAGLVTLEANA 323
Query: 253 FSVPAL--GRKVGGIPELIRDGKNGFLFDSIDEAEKFLRVLLDLKVNAKVGALGKRVASL 310
+P + K+ ELI +GKNG LF ++D + +++L + + K+ + A
Sbjct: 324 AGLPVITTNHKLNASRELI-NGKNGVLF-NLDPHDLKEKIILIMNEHEKLRKDCIKFAES 381
Query: 311 YSWDDVAIRYERLYRRVLE 329
YSWD +A E +Y VL+
Sbjct: 382 YSWDKIADLTENVYLEVLK 400
>pir||C72340 probable hexosyltransferase (EC 2.4.1.-) TM0744 - Thermotoga
maritima (strain MSB8)
>gi|4981269|gb|AAD35825.1|AE001744_15 (AE001744)
conserved hypothetical protein [Thermotoga maritima]
Length = 406
Score = 83.1 bits (202), Expect = 4e-15
Identities = 87/369 (23%), Positives = 157/369 (41%), Gaps = 54/369 (14%)
Query: 9 YPPHRGGVARHLKEVVERLRRR-HSVDVLTYGTVATDVYSVKVPNVFGLRGISFSF---- 63
Y P GVA ++ ++L R H V V+ + +VF +R I F F
Sbjct: 10 YAPQINGVATSIRVYKKKLTERGHKVVVVAPSAPEEE------KDVFVVRSIPFPFEPQH 63
Query: 64 ----LASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMSKL 119
++K I+E E N +IH+H F + + ++G+P V T H E+ +
Sbjct: 64 RISIASTKNILEFMRENNVQIIHSHSPFFIGFKALRVQEEMGLPHVHTYHTLLPEYRHYI 123
Query: 120 P--------LGRYFVKASLREADAVTAVSHFLAKRAISLGAK-SVEVISNGVSTCGDRV- 169
P L +F + V A + + + S G K +EV+ G+ V
Sbjct: 124 PKPFTPPKRLVEHFSAWFCNMTNVVIAPTEDIKRELESYGVKRPIEVLPTGIEVEKFEVE 183
Query: 170 ------------SKKYIVFLGKVSKYKGIDEFLEL--ARRFPELEFLIAGEGNLRELPS- 214
KK +++ G+++K K +D L + + P + F++ G+G RE
Sbjct: 184 APEELKRKWNPEGKKVVLYAGRIAKEKNLDFLLRVFESLNAPGIAFIMVGDGPEREEVEE 243
Query: 215 -------NVKFLGYVNPDDV---LSRALALVLPSKREGFGMVILEANSFSVPALGRKVGG 264
++K G+V D++ V SK E G+V+LEA + +P + K G
Sbjct: 244 FAKEKGLDLKITGFVPHDEIPLYYKLGDVFVFASKTETQGLVLLEALASGLPVVALKWKG 303
Query: 265 IPELIRDGKNGFLFDSIDE---AEKFLRVLLDLKVNAKVGALGKR-VASLYSWDDVAIRY 320
+ +++++ + L + +E AEK +L + ++ ++ G+ V +S D R
Sbjct: 304 VKDVLKNCEAAVLIEEENERLFAEKIKHILKNDRLREELSTKGREFVRKEWSVDRFVQRL 363
Query: 321 ERLYRRVLE 329
E +Y R +E
Sbjct: 364 EEIYTRAIE 372
>gb|AAF14309.1| (U45308) SqdX [Synechococcus PCC7942]
Length = 377
Score = 81.5 bits (198), Expect = 1e-14
Identities = 88/371 (23%), Positives = 150/371 (39%), Gaps = 46/371 (12%)
Query: 1 MRI-LMVGHYPPHRGGVARHLKEVVERLRRR-HSVDVLTYGTVATDVYSVKVPNVFGLRG 58
MRI L + P G+ L+ V+ L+R H+V V + K V+G++G
Sbjct: 1 MRIALFTETFLPKVDGIVTRLRHTVDHLQRLGHTVMVFCPDG---GLREHKGARVYGVKG 57
Query: 59 ISFSFLASKKIV-------ELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGS 111
K+ + E DLIH G+ + L +PLV + H
Sbjct: 58 FPLPLYPELKLAFPLPKVGKALERFRPDLIHVVNPAVLGLGGIYYAKALNVPLVASYHTH 117
Query: 112 DLEFMSKLPLGRY------FVKASLREADAVTAVSHFLAKRAISLGAKSVEVISNGVST- 164
+++ LG +K + +A S + + G + + GV T
Sbjct: 118 LPKYLEHYGLGVLEGVLWELLKLAHNQAAINLCTSTAMVQELTDHGIEHCCLWQRGVDTE 177
Query: 165 ---------------CGDRVSKKYIVFLGKVSKYKGIDEFLELARRFPELEFLIAGEGNL 209
G + + ++++G++S K ID + PE + G+G
Sbjct: 178 TFRPDLATAAMRDRLSGGKPTAPLLLYVGRLSAEKQIDRLRPILDANPEACLALVGDGPH 237
Query: 210 R-ELP-----SNVKFLGYVNPDDV---LSRALALVLPSKREGFGMVILEANSFSVPALGR 260
R EL + +F+GY++ + + + A A V PS+ E G+V+LEA + P +
Sbjct: 238 RAELEQLFAGTQTQFIGYLHGEQLGAAYASADAFVFPSRTETLGLVLLEAMAAGCPVVAA 297
Query: 261 KVGGIPELIRDGKNGFLFDSIDE---AEKFLRVLLDLKVNAKVGALGKRVASLYSWDDVA 317
GGIP+++ DG NGFLFD DE R+L + + ++ A +SW+
Sbjct: 298 NSGGIPDIVSDGINGFLFDPEDEQGAIAAIQRLLANPAEREILRQAARQEAERWSWNAAT 357
Query: 318 IRYERLYRRVL 328
+ + Y VL
Sbjct: 358 RQLQDYYCEVL 368
>gi|11497939 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451323|pir||G69290 probable hexosyltransferase (EC
2.4.1.-) AF0327 [similarity] - Archaeoglobus fulgidus
>gi|2650310|gb|AAB90909.1| (AE001082) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 357
Score = 80.0 bits (194), Expect = 4e-14
Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 17/157 (10%)
Query: 136 VTAVSHFLAKRAISLGAKSVEVISNGVSTCGDRVSKKY-----IVFLGKVSKYKGIDEFL 190
+ AVS A+ ++LG K+VEVI NG+ R + +VF G++ K KG D +
Sbjct: 150 MVAVSETTARNLLNLGVKNVEVIPNGIDFEFIRRVEASEESLDVVFAGRLIKEKGADLLI 209
Query: 191 ELARRFPELEFLIAGEGN-----LRELPSNVKFLGYVNPDDV---LSRALALVLPSKREG 242
+ + P+ LI GEG ++ P NVKF G++N + L A VLPS+REG
Sbjct: 210 KAMKLLPDYSCLIVGEGPEKASLIKSAPENVKFAGFMNYGYLIATLKSAKVFVLPSRREG 269
Query: 243 FGMVILEANSFSVP--ALGRKVGGIPELIRDGKNGFL 277
FG+ LEAN+ +P + + + E+ R+ GF+
Sbjct: 270 FGIAALEANACGLPVVTINHPMNAVVEIARE--TGFI 304
>emb|CAB70927.1| (AL137778) putative sugar transferase [Streptomyces coelicolor
A3(2)]
Length = 387
Score = 80.0 bits (194), Expect = 4e-14
Identities = 96/353 (27%), Positives = 157/353 (44%), Gaps = 44/353 (12%)
Query: 14 GGVARHLKEVVER-LRRRHSVDVLTYGTVATDV--------YSVKVPNVFGLRGISFSFL 64
GGV H++++ E +R H V VL T + +V VP + ++F FL
Sbjct: 15 GGVQFHIRDLAEYFVRLGHEVSVLAPADDDTPLPPYVVSAGRAVPVPYNGSVARLNFGFL 74
Query: 65 ASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMSKLPLGRY 124
++ ++ E +D+IH H + S G+L P+V T H S+ S+ + Y
Sbjct: 75 SAARVRRWLHEGGFDVIHIHEPTSPSL-GLLTCWAAQGPIVATFHTSNPR--SRAMIAAY 131
Query: 125 FV-KASLREADAVTAVSHFLAKRAIS-LGAKSVEVISNGVST--CGDRVSKKY-----IV 175
+ +A+L + A AVS + + + LG +V VI NGV D K I
Sbjct: 132 AILQAALEKISARIAVSEYARRTLVEHLGGDAV-VIPNGVDVDFFADAEPKPEWQGDTIG 190
Query: 176 FLGKVSK-YKGIDEFLE-----LARRFPELEFLIAGEGNL--------RELPSNVKFLGY 221
F+G++ + KG+ + LA R P+ L+AG G+ +EL S V+FLG
Sbjct: 191 FIGRIDEPRKGLPVLMRALPAILAAR-PQTRLLVAGRGDEEEAVESLPKELRSRVEFLGM 249
Query: 222 VNPDD----VLSRALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFL 277
++ +D + S L + + E FG+V++EA S P L + +++ G G L
Sbjct: 250 ISDEDKARFLRSVDLYVAPNTGGESFGIVLVEAMSAGAPVLASDLDAFAQVLDQGAAGEL 309
Query: 278 FDSIDE---AEKFLRVLLDLKVNAKVGALGKRVASLYSWDDVAIRYERLYRRV 327
F + D AE +R+L D + A + G + W V +Y V
Sbjct: 310 FPNEDADALAEAAVRLLADPERRAALRERGSAHVRRFDWSTVGADILSVYETV 362
>emb|CAC11484.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 388
Score = 80.0 bits (194), Expect = 4e-14
Identities = 73/287 (25%), Positives = 131/287 (45%), Gaps = 33/287 (11%)
Query: 68 KIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLE---FMSKLPLGRY 124
++VE + D++H H T S AG+ + K GIPLVVT H ++ + F +
Sbjct: 102 RVVEQFDPDGVDVVHCHDWITFS-AGLRIREKYGIPLVVTFHSTEFDRSAFFNPQERIMS 160
Query: 125 FVKASLREADAVTAVSHFLAKRAI-SLGAKSVEV--ISNGVS-----TCGDRVSKKYIVF 176
+ R AD + VS+ + + + GA ++ I NGV + D ++ +++
Sbjct: 161 IERDGARNADRIICVSNLTRRMIVENYGADDTKIRTIYNGVDPYPYLSHPDEKRERDVLY 220
Query: 177 LGKVSKYKGIDEFLELARRFPELE----FLIAGEGNLRELP------------SNVKFLG 220
G+V+ KG F+E+A++ EL+ F +AG G L LP +++ F G
Sbjct: 221 FGRVTSQKGPKFFMEVAKKVLELDGSVKFTVAGTGEL--LPEMKRYAFENGFLNHMDFTG 278
Query: 221 YVNPDDVLS---RALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFL 277
+V+ +S R+ ++P+ E FGM +LEA P + K G+ E + +
Sbjct: 279 FVSFRRAISYYKRSSVFIIPAVSEPFGMTVLEAMISGTPVILSKTTGVGEALNHVLSADF 338
Query: 278 FDSIDEAEKFLRVLLDLKVNAKVGALGKRVASLYSWDDVAIRYERLY 324
+D+ A + +L + + GK A ++W A+ +Y
Sbjct: 339 WDTDKMALYTISILNHRGLLKTLSEYGKMEAMRFTWRRAALSTMEVY 385
>pir||A75059 probable hexosyltransferase (EC 2.4.1.-) PAB0973 [similarity] -
Pyrococcus abyssi (strain Orsay)
>gi|5458879|emb|CAB50366.1| (AJ248287) LPS BIOSYNTHESIS
RFBU RELATED PROTEIN [Pyrococcus abyssi]
Length = 390
Score = 79.6 bits (193), Expect = 5e-14
Identities = 92/381 (24%), Positives = 161/381 (42%), Gaps = 60/381 (15%)
Query: 1 MRILMVGHY-PPHRGGVARHLKEVVERL-RRRHSVDVLTYGTVATDVYSVKVPNV----- 53
M++LM+ Y P GG+ ++ + L R V V+T + +++ V
Sbjct: 1 MKLLMITPYFYPEGGGLEKYAYMIARGLVERGWEVKVITASRKGNSLENLEGIEVIRLAP 60
Query: 54 -FGLRGISFSFLASKKIVELHEERNYDLIHAH-----YVGTTSFAGVLAKRKLGIPLVVT 107
F + SF K++++ +E + +I+AH Y +++ + K P V+T
Sbjct: 61 HFIVSNTPISFNLPLKLIKVFKEEQFSVINAHTPVPYYADVSAWVNNVLKGSNKTPFVLT 120
Query: 108 AHGSDLEFMSKLPLGRYFVKASLRE-----ADAVTAVSHFL--AKRAISLGAKSVEVISN 160
H ++ L Y SL+ +D + S + + + K + I
Sbjct: 121 YHNDLVKEGFPLDKVAYLYNLSLQRGLLLLSDTIITPSPYCYYESKLLRRFKKKLIWIPP 180
Query: 161 GVSTCGDRVSKKY--------------IVFLGKVSK---YKGIDEFLE----LARRFPEL 199
GV T K Y ++F+G +++ +KG+ L+ +A + +
Sbjct: 181 GVDTERYFPGKSYRLHSIYNLPRSAKIVMFIGTMNRGHAHKGVPYLLKAFKYVATQVKDS 240
Query: 200 EFLIAGEGNLRE----------LPSNVKFLGYVNPD---DVLSRALALVLPSK--REGFG 244
++ G G++ + V F GYV D + + +VLPS +EGFG
Sbjct: 241 YLVLVGRGDMIPEYKKMCMSLGISKRVIFTGYVEEDILPEFYRSSDVIVLPSTTVQEGFG 300
Query: 245 MVILEANSFSVPALGRKVGGIPELIRDGKNGFLF---DSIDEAEKFLRVLLDLKVNAKVG 301
MV++EA + P +G VGGI +I +GK G L D AE + +L D + K+G
Sbjct: 301 MVLIEAGASGKPVIGTNVGGIKHVIENGKTGILVPPKDPFRLAEAIVTLLTDDNLARKIG 360
Query: 302 ALGKR-VASLYSWDDVAIRYE 321
G+R V YSWD + + E
Sbjct: 361 KTGRRLVEREYSWDKIVEKTE 381
>pir||D69143 LPS biosynthesis RfbU related protein - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621394|gb|AAB84844.1| (AE000818) LPS biosynthesis
RfbU related protein [Methanobacterium
thermoautotrophicum]
Length = 350
Score = 78.4 bits (190), Expect = 1e-13
Identities = 86/317 (27%), Positives = 136/317 (42%), Gaps = 54/317 (17%)
Query: 60 SFSFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAH---------- 109
+F+ KI + + DL+H H G S + G+P+V TAH
Sbjct: 40 TFNLRLKNKIRTILLDEKPDLVHVHNFGGLSTLLFNEIKNNGLPVVFTAHDYSVICPKAN 99
Query: 110 -----GSDLEFMSKLPLGRYFVKASLR--EADAVTAVSHFLAKRAISLGA-------KSV 155
S E S + LG +K L D V + S FL + K
Sbjct: 100 LLRSDNSICEEGSLICLGYAKIKKFLLGGAVDVVISPSQFLINKLRENNIFNETEMIKLP 159
Query: 156 EVISNGVSTCGDRV--SKKYIVFLGKVSKYKGIDEFLELARRFPELEFLI------AGEG 207
I G ++ + K ++++G++SK+KG+ +E +R + + E
Sbjct: 160 NPIELGETSPSSKPYHKKLMLLYVGELSKHKGLHILIEALKRIDDENICVDIYGRGVHED 219
Query: 208 NLRELPS--NVKFLGYVNPDDVLSRAL----ALVLPSK-REGFGMVILEANSFSVPALGR 260
+ + NV F GY N + L +A V+PS E FGM+ILE+ S P +
Sbjct: 220 YFKSISKDLNVFFRGYANGFEELKKAYQNANVTVVPSICYEVFGMIILESFMNSTPVIAS 279
Query: 261 KVGGIPELIRDGKNGFLF--DSIDEAEKFLR-------VLLDLKVNAKVGALGKRVASLY 311
++GGIPE++RDG NGFLF S++ + L +L +L+ NA + G Y
Sbjct: 280 RIGGIPEVVRDGYNGFLFKPGSVNGLRRILERISEHPSILKELERNAYKSSQG------Y 333
Query: 312 SWDDVAIRYERLYRRVL 328
S +D + E +YR +L
Sbjct: 334 SIEDHVKKLEEIYRGLL 350
>sp|Q11152|Y486_MYCTU HYPOTHETICAL 50.5 KDA PROTEIN RV0486 >gi|7476374|pir||A70744
probable hexosyltransferase (EC 2.4.1.-) Rv0486
[similarity] - Mycobacterium tuberculosis (strain H37RV)
>gi|1449284|emb|CAB00947.1| (Z77162) hypothetical
protein Rv0486 [Mycobacterium tuberculosis]
Length = 480
Score = 77.6 bits (188), Expect = 2e-13
Identities = 83/306 (27%), Positives = 133/306 (43%), Gaps = 51/306 (16%)
Query: 72 LHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMSKL--------PLGR 123
+HE YD++H+HY + G LA+ + +PLV TAH + L PL
Sbjct: 142 VHEPGYYDIVHSHY-WLSGQVGWLARDRWAVPLVHTAHTLAAVKNAALADGDGPEPPLRT 200
Query: 124 YFVKASLREADAVTAVSHFLAKRAISL-GA--KSVEVISNGVS----TCGDR-------- 168
+ + EAD + + A++ ISL GA ++V+ GV GDR
Sbjct: 201 VGEQQVVDEADRLIVNTDDEARQVISLHGADPARIDVVHPGVDLDVFRPGDRRAARAALG 260
Query: 169 --VSKKYIVFLGKVSKYKGIDEFLELARRFPELEFLIAG----------EGNLR-----E 211
V ++ + F+G++ K D L A + P + ++AG +G +R
Sbjct: 261 LPVDERVVAFVGRIQPLKAPDIVLRAAAKLPGVRIIVAGGPSGSGLASPDGLVRLADELG 320
Query: 212 LPSNVKFLGYVNPDDV--LSRALALV-LPSKREGFGMVILEANSFSVPALGRKVGGIPEL 268
+ + V FL + D+ L RA LV +PS E FG+V +EA + P + VGG+P
Sbjct: 321 ISARVTFLPPQSHTDLATLFRAADLVAVPSYSESFGLVAVEAQACGTPVVAAAVGGLPVA 380
Query: 269 IRDGKNGFLFDS------IDEAEKFLRVLLDLKVNAKVGALGKRVASLYSWDDVAIRYER 322
+RDG G L D + LR+ + A + A+ +SW++
Sbjct: 381 VRDGITGTLVSGHEVGQWADAIDHLLRLCAGPRGRVMSRAAARHAAT-FSWENTTDALLA 439
Query: 323 LYRRVL 328
YRR +
Sbjct: 440 SYRRAI 445
>pir||D72511 probable hexosyltransferase (EC 2.4.1.-) APE2066 [similarity] -
Aeropyrum pernix (strain K1) >gi|5105764|dbj|BAA81076.1|
(AP000063) 392aa long hypothetical
N-acetylglucosaminyl-phosphatidylinositol biosynthetic
protein [Aeropyrum pernix]
Length = 392
Score = 74.9 bits (181), Expect = 1e-12
Identities = 90/369 (24%), Positives = 159/369 (42%), Gaps = 44/369 (11%)
Query: 3 ILMVGHYPPHRGGVARHLKEVVERLRR-RHSVDVLTYGTVATDVYSVK------VPNVFG 55
++++ +P GGV H++++ L+ + V +++ DV ++ V +F
Sbjct: 23 VMVMDFHPSSVGGVQSHVRDLTRLLQDFGYDVVIVSRALGKGDVKDLEAEGHYIVKPLFP 82
Query: 56 LRGISFSFLASKKIVELHEERNYDLIHAHYVGT-TSFAGVLAKRKLGIPLVVTAHGSDLE 114
L I S E+ E D++H+H++ T TS + A R LG+P + T H L
Sbjct: 83 LEIIFVPPDPSDLRREI-ESLKPDVVHSHHIYTLTSLLALKAARDLGLPRIATNHSIFLA 141
Query: 115 FMSKLPLGRYF-----VKASLREADAVTAVSHFLAKRAISLGAKSVE--VISNGVST--- 164
+ K+ L R + L A AV +VS K + SV+ +I NGV
Sbjct: 142 Y-DKVALWRIASIVLPTRYLLPNAQAVISVSTAADKMVEGIVGDSVDRYIIPNGVDVERF 200
Query: 165 --CGDRVSKKYIVFLGKVSKYKG----IDEFLELARRFPELEFLIAGEGNLRE------- 211
+ ++FLG++ KG + F + + + I G+G
Sbjct: 201 KPSTPKADYPLVLFLGRLVWRKGAHVLVRAFRHVVDEIRDAKLYIGGKGEFEPIIKLLIA 260
Query: 212 ---LPSNVKFLGYVNPDD---VLSRALALVLPS-KREGFGMVILEANSFSVPALGRKVGG 264
L +NVK LG V + + S A +PS E FG+V LE+ S P + + GG
Sbjct: 261 RYGLENNVKMLGVVPESEKPSLYSSAWVTAVPSIVNESFGIVALESLSSGTPVVASRQGG 320
Query: 265 IPELIRDGKNGFLF---DSIDEAEKFLRVLLDLKVNAKVGALGKR-VASLYSWDDVAIRY 320
+ ++++ GK G L S + A+ + +L D + ++ ++ V Y W V +
Sbjct: 321 LKDVVKHGKTGLLVKPGSSKELAKALITLLQDSGLRKRMSEEARKIVLERYDWRKVVPQI 380
Query: 321 ERLYRRVLE 329
++Y +E
Sbjct: 381 LKVYGHYME 389
>emb|CAC12195.1| (AL445066) N-acetylglucosaminyl-phosphatidylinositol biosynthetic
protein related protein [Thermoplasma acidophilum]
Length = 381
Score = 74.9 bits (181), Expect = 1e-12
Identities = 91/336 (27%), Positives = 143/336 (42%), Gaps = 59/336 (17%)
Query: 1 MRIL-MVGHYPPHRGGVARHLKEVVERLR---------------RRHSVDVLTYGTVATD 44
MRIL Y P GV+ +LKEV ++L R H+V V Y
Sbjct: 1 MRILYFTDTYYPTPDGVSVYLKEVKQKLEDEGHEVMIFSVTGDSREHNVYVPKYTAPFLP 60
Query: 45 VYSVKVPNVFGLRGISFSFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPL 104
+VP F F ++ +E N D++H H S G L R++G+P
Sbjct: 61 YPQYRVPVSF------IPFRVFRRALEF----NPDIVHLHNAFYMSSVGYLVARRIGVPP 110
Query: 105 VVTAHGSDLEFMSK----------LPLGRYFVKASLREADAVTAVSHFLAKRAISLGAKS 154
V T H +D+ M + LG + R+ V A S + + G K+
Sbjct: 111 VATFH-TDVSRMKESINMPFKNLAFDLGERYSLFLYRKCRMVMAPSATVEEYLKIRGVKN 169
Query: 155 VEVISNGVSTCGDRV-----SKKYIVFLGKVSKYKGIDEFLELAR--RFPELEFLIAGEG 207
V + V T R ++YI++LG+++ KGI L+LA + ++ F IAG G
Sbjct: 170 VVTLPLFVDTDKYRYVPADSGERYILYLGRITVDKGIYRVLDLAEAMKSEDVRFKIAGVG 229
Query: 208 ----NLREL-----PSNVKFLGYVNPD---DVLSRALALVLPSKREGFGMVILEANSFSV 255
+R + NV+ LGYV+ D+++ A V PS + FG+ + EA + V
Sbjct: 230 PELDRIRRIVKYHGMKNVEILGYVDDQRKMDLMANASLFVYPSSADTFGISVFEALASGV 289
Query: 256 PALGRK---VGGIPELIRDGKNGFLFDSIDEAEKFL 288
P + + V E I K G + +++ AE+ L
Sbjct: 290 PVMVSEDFPVKENTEAISYVKFGDIRSAVETAERIL 325
>gi|11497659 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451322|pir||F69254 probable hexosyltransferase (EC
2.4.1.-) AF0038 [similarity] - Archaeoglobus fulgidus
>gi|2650614|gb|AAB91191.1| (AE001104) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 361
Score = 74.9 bits (181), Expect = 1e-12
Identities = 92/352 (26%), Positives = 157/352 (44%), Gaps = 44/352 (12%)
Query: 9 YPPHRGGVARHLKEVVERLRRRHSVDVLTYGTVATD---------VYSVKVPNVF--GLR 57
YP +GGV R L EV RL H+V L G + + K ++ G R
Sbjct: 11 YPWTKGGVERRLHEVGRRLSNEHNVKWLCVGWWGKEKRIQEGVELIPVCKAQQLYSRGRR 70
Query: 58 GISFSFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHG--SDL-- 113
I + + + +++ + D+I S +++L V+T H D
Sbjct: 71 TIREAMIFAASLLKKSRIKA-DVIDCQVFPYLSVFPFATRKEL----VLTWHEFWGDYWY 125
Query: 114 EFMSKLPLGRYFVKASLREADAVT-AVSHFLAKRAISLGAKSVEVISNGV-----STCGD 167
E++ K V+ + + A T AVS K SLG ++ VI NGV S
Sbjct: 126 EYLGKAGFFGKAVERIVAKLKARTIAVSETTRKALESLGIRAT-VIPNGVDFPRISEIPA 184
Query: 168 RVSKKYIVFLGKVSKYKGIDEFLELARRFPELEFLIAGEGNLRE-----LPSNVKF---L 219
+ ++F+G++ + K ++ + + PEL L+ G+G RE P+NV F L
Sbjct: 185 SSEEWDVIFVGRLIREKNLELLFDAMKLLPELNCLVVGDGPERERLSKIAPANVDFGGSL 244
Query: 220 GYVNPDDVLSRALALVLPSKREGFGMVILEANSFSVP--ALGRKVGGIPELIRDGKNGFL 277
GY ++ + +PS+REGFG+ LEAN+ +P + ++ + E+ K GF+
Sbjct: 245 GYEEVISMMKSSKVFAIPSRREGFGISALEANACGLPVVTIRHQMNAVVEIAE--KTGFV 302
Query: 278 FD--SIDEAEKFLRVLLDLKVNAKVGALGKRVASLYSWDDVAIRYERLYRRV 327
+ + D AEK +R+ L+++ + + A + W+ +A R E Y V
Sbjct: 303 AEPHARDFAEK-IRLALEMRREMREKCI--NFAKNFDWEVIARRLEEFYEGV 351
>sp|P54138|Y486_MYCLE HYPOTHETICAL 43.5 KDA PROTEIN U2168F >gi|2145762|pir||S72892
probable hexosyltransferase (EC 2.4.1.-) B2168_C2_201
[similarity] - Mycobacterium leprae
>gi|467044|gb|AAA17228.1| (U00018) u2168f; B2168_C2_201
[Mycobacterium leprae]
Length = 409
Score = 74.1 bits (179), Expect = 2e-12
Identities = 79/311 (25%), Positives = 128/311 (40%), Gaps = 63/311 (20%)
Query: 73 HEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMSKL--------PLGRY 124
HE YD++H+HY + G LA+ + +PLV TAH + L PL
Sbjct: 76 HEPGYYDIVHSHY-WLSGQVGWLARDRWAVPLVHTAHTLAAVKNAALADGDAAEPPLRSV 134
Query: 125 FVKASLREADAVTAVSHFLAKRAISL---GAKSVEVISNGVS----TCGDR--------- 168
+ + EAD + + A++ IS+ ++V GV GDR
Sbjct: 135 GEQQVVDEADRMIVNTDDEARQLISIHRADPAKIDVAHPGVDLDMFRPGDRRAARAALGL 194
Query: 169 -VSKKYIVFLGKVSKYKGIDEFLELARRFPELEFLIAG----------EGNLR-----EL 212
+ + F+G++ K D L A + P++ ++AG +G +R +
Sbjct: 195 PLDGNVVAFVGRIQPLKAPDIVLRAAAKLPQVRIVVAGGPSGSGLASPDGLVRLADELGI 254
Query: 213 PSNVKFL---GYVNPDDVLSRALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELI 269
+ V FL N V A + +PS E FG+V +EA + P + VGG+P +
Sbjct: 255 TARVTFLPPQSRTNLATVFQAADLVAVPSYSESFGLVAVEAQACGTPVVAAAVGGLPVAV 314
Query: 270 RDGKNGFLF---------DSIDEAEKFLRVLLDLKVNAKVGALGKRV---ASLYSWDDVA 317
RDG G L D++D+ LL L + A+ + A+ +SWD+
Sbjct: 315 RDGVTGTLVFGHNVGHWADAVDQ-------LLRLSAGPQARAISRAAVVHAAQFSWDNTT 367
Query: 318 IRYERLYRRVL 328
YRR +
Sbjct: 368 DALLASYRRAI 378
>emb|CAB43611.1| (AJ239004) galactosyl transferase [Streptococcus pneumoniae]
Length = 354
Score = 74.1 bits (179), Expect = 2e-12
Identities = 84/293 (28%), Positives = 134/293 (45%), Gaps = 49/293 (16%)
Query: 77 NYDLIHAHYVGTTSFAGVLAKRKLGIPL--------VVTAHGSDLE-FMSKLP-LGRYFV 126
NYD+ H H T+ G ++ L + L ++ HG++ + F LP + V
Sbjct: 68 NYDIYHIH----TATRGSCWRKLLYLKLLKSKNKKAILHIHGAEFQIFYDSLPEYKKNKV 123
Query: 127 KASLREADAVTAVSH----FLAKRAISLGAKSVEVISNGVSTCGDRVSKKYI-----VFL 177
+ L +D V +S F + I++ AK V ++ NGV T KK I +FL
Sbjct: 124 REMLELSDYVIVLSQTWYDFFSN--ININAKIV-IVENGVDTSFYVEKKKSITSNNFLFL 180
Query: 178 GKVSKYKG----IDEFLELARRFPELEFLIAGEGNLRELPSNVKFLG---------YVNP 224
G++ K KG ID + P L +AG+G L ++ + L +VN
Sbjct: 181 GRMGKRKGAYDLIDAMNQAVAINPNLHLTMAGDGELEDIRQKISNLNLTDHITIYDWVNQ 240
Query: 225 DD--VLSRA-LALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFLFDSI 281
D +L +A L+LPS EG M ILEA + + + VGGIPE+I + NG+L
Sbjct: 241 RDKKILFQANQTLILPSYNEGLPMAILEAMASGLAIISTPVGGIPEIIHE-DNGWLIQPG 299
Query: 282 DEAEKFLRVLLDLKVNAKVGAL-----GKRVASLYSWDDVAIRYERLYRRVLE 329
D + ++L+ N V +L K V YS+ + + +++Y +LE
Sbjct: 300 D-ISQLSNIILEASYNPDVVSLMGSNNHKLVEEKYSFHSMHGKIKKIYNTLLE 351
>gb|AAK42884.1| Glycosyltransferase, putative [Sulfolobus solfataricus]
Length = 349
Score = 73.7 bits (178), Expect = 3e-12
Identities = 71/278 (25%), Positives = 135/278 (48%), Gaps = 24/278 (8%)
Query: 74 EERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMSKLPLGRY--FVKASLR 131
E R ++++ F L + I LV H +++ + R F + S+
Sbjct: 74 EARRHEIVIDSVAHAVPFYSYLVNKN-AIALVHHVHQDVVKYELNPIMARAVAFSERSVS 132
Query: 132 EADAVTAVSHFLAKRAIS-LGAKS--VEVISNGVS----TCGDRVSKKYIVFLGKVSKYK 184
++ AVS+ + + L AK +EVI NG+ G + S+ I+++G++ KYK
Sbjct: 133 NYKSIIAVSNTTKRDLVERLKAKEDRIEVIHNGIDHNIYRPGKKASEPTILWIGRLKKYK 192
Query: 185 GIDEFLELARRFPELEFLIAGEGNLR-ELPSNVK-----FLGYVNPDDVL---SRALALV 235
+ +++A+R + + ++AG G+L E+ +K +LG V+ +D + A ++
Sbjct: 193 NPLDAIDVAKRV-KAKLVMAGGGDLENEVVQKIKTINGEYLGRVSEEDKIRLYQSAWIVI 251
Query: 236 LPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFL--FDSIDEAEKFLRVLLD 293
+ S EG+ MV +EAN+ P + G +PE+I++G NG++ + I+ K + L++
Sbjct: 252 VTSFIEGWSMVTVEANACGTPVIAYNKGSLPEIIKNGVNGYIVNYKDIEAMSKIINELIE 311
Query: 294 LKVNAKVGALGKRVASL-YSWDDVAIR-YERLYRRVLE 329
+ K SL Y WD + + Y L R+ L+
Sbjct: 312 DEKRIKELWKSSYEESLNYDWDKSSEKYYNYLIRKALD 349
>pir||F70937 hypothetical protein Rv2188c - Mycobacterium tuberculosis (strain
H37RV) >gi|2911108|emb|CAA17492.1| (AL021957)
hypothetical protein Rv2188c [Mycobacterium
tuberculosis]
Length = 399
Score = 73.7 bits (178), Expect = 3e-12
Identities = 100/377 (26%), Positives = 160/377 (41%), Gaps = 68/377 (18%)
Query: 3 ILMVGHYPPHRGGVARHLKEVVERL--RRRHSVDVLTYGTVATDVYS----------VKV 50
+L+ +PP RGG+ +L E V RL R H++ V D + V+
Sbjct: 19 LLVTNDFPPRRGGIQSYLGEFVGRLVGSRAHAMTVYAPQWKGADAFDDAARAAGYRVVRH 78
Query: 51 PNVFGLRGISFSFLASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKL---GIPLVVT 107
P+ L G + + I E H+ I + G + +LA R ++ +
Sbjct: 79 PSTVMLPGPTVDVRMRRLIAE-HD------IETVWFGAAAPLALLAPRARLAGASRVLAS 131
Query: 108 AHGSDLEFMSKLPLGRYFVKASLREADAVTAVSHFLAKRAISL--GAKSVEVISNGVSTC 165
HG ++ + S LP+ R ++ D VT VS + R S A S+E + GV T
Sbjct: 132 THGHEVGW-SMLPVARSVLRRIGDGTDVVTFVSSYTRSRFASAFGPAASLEYLPPGVDTD 190
Query: 166 GDR--------VSKKY-------IVFLGKVSKYKGIDEFL----ELARRFPELEFLIAGE 206
R + K+Y +V L ++ KG D + + RR +I G
Sbjct: 191 RFRPDPAARAELRKRYRLGERPTVVCLSRLVPRKGQDTLVTALPSIRRRVDGAALVIVGG 250
Query: 207 G----NLRELP------SNVKFLGYVNPDDVLSR-ALALV--LPSKR-------EGFGMV 246
G LR+L +V F G V D++ + ALA V +P + EG G+V
Sbjct: 251 GPYLETLRKLAHDCGVADHVTFTGGVATDELPAHHALADVFAMPCRTRGAGMDVEGLGIV 310
Query: 247 ILEANSFSVPALGRKVGGIPELIRDGKNGFLFD--SIDE-AEKFLRVLLDLKVNAKVGAL 303
LEA++ VP + GG PE ++ K G + D S+D A+ +L+D +GA
Sbjct: 311 FLEASAAGVPVIAGNSGGAPETVQHNKTGLVVDGRSVDRVADAVAELLIDRDRAVAMGAA 370
Query: 304 GKR-VASLYSWDDVAIR 319
G+ V + + WD +A +
Sbjct: 371 GREWVTAQWRWDTLAAK 387
>emb|CAB63280.1| (AJ251713) mannosyltransferase-like protein [Yersinia pestis]
Length = 337
Score = 73.4 bits (177), Expect = 4e-12
Identities = 84/325 (25%), Positives = 129/325 (38%), Gaps = 42/325 (12%)
Query: 14 GGVARHLKEVVERLRRRHSVDVLTYGTVATDVYSVKVPNVFGLRGISFSFLASKKIVELH 73
GGV + E+V RL ATD Y + G+ + S+ L
Sbjct: 16 GGVTVYFSELVSRLP-------------ATDFYWYSYADEISGFGVGNVKIKSRL---LE 59
Query: 74 EERNYDLIHAHYVGTTSF-AGVLAKRKLGIPLVVTAHGSDLEFMSKLP---LGRYFVKAS 129
RN+ L +Y + F + IP+V T H E P + + +
Sbjct: 60 RYRNFSLDTINYNSLSVFHSSYYRLPDFDIPIVTTVHDFTYEKFVNGPAKWVHSWQKNRA 119
Query: 130 LREADAVTAVSHFLAKRA---ISLGAKSVEVISNGVSTC-----GDRVSKKYIVFLGKVS 181
+ +D + VS AK S+ + + VI NGVS G +++ ++F+G
Sbjct: 120 VNNSDLIICVSENTAKDLQMYCSVPSNKIRVIYNGVSDKYHYIKGVKITTNKVIFVGARG 179
Query: 182 KYKGIDEFLELARRFPELEFLIAGEGNLRE---------LPSNVKFLGYVNPD---DVLS 229
YK D ++ + P LE + G G LP LG ++ + + +
Sbjct: 180 GYKNFDIAVKAISKTPHLELSVVGGGAFTSKELSLLNHYLPGRYHGLGRLSDEALNEAYN 239
Query: 230 RALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFLFDSIDEAEKFLR 289
A AL+ PS EGFG+ ILEA S P + V IPE+ D +IDE L
Sbjct: 240 SAYALLYPSSYEGFGIPILEAMSAGCPVISVNVSSIPEVAGDAAILVQKPTIDELVDGL- 298
Query: 290 VLLDLKVNAKVGALGKRVASLYSWD 314
L +K+ G + A+ +SWD
Sbjct: 299 -LAVESERSKLIGYGMKQAAKFSWD 322
>emb|CAB63299.1| (AJ251712) mannosyltransferase-like protein [Yersinia
pseudotuberculosis]
Length = 337
Score = 73.0 bits (176), Expect = 5e-12
Identities = 83/325 (25%), Positives = 129/325 (39%), Gaps = 42/325 (12%)
Query: 14 GGVARHLKEVVERLRRRHSVDVLTYGTVATDVYSVKVPNVFGLRGISFSFLASKKIVELH 73
GGV + E+V RL ATD Y + G+ + S+ L
Sbjct: 16 GGVTVYFSELVSRLP-------------ATDFYWYSYADEISGFGVGNVKIKSRL---LE 59
Query: 74 EERNYDLIHAHYVGTTSF-AGVLAKRKLGIPLVVTAHGSDLEFMSKLP---LGRYFVKAS 129
RN+ L +Y + F + IP+V T H E P + + +
Sbjct: 60 RYRNFSLDTINYNSLSVFHSSYYRLPDFDIPIVTTVHDFTYEKFVNGPAKWVHSWQKNRA 119
Query: 130 LREADAVTAVSHFLAKRA---ISLGAKSVEVISNGVSTC-----GDRVSKKYIVFLGKVS 181
+ +D + VS AK S+ + + VI NGVS G +++ ++F+G
Sbjct: 120 VNNSDLIICVSENTAKDLQMYCSVPSNKIRVIYNGVSDKYHYIKGVKITTNKVIFVGARG 179
Query: 182 KYKGIDEFLELARRFPELEFLIAGEGNLRE---------LPSNVKFLGYVNPD---DVLS 229
YK D ++ + P LE + G G LP LG ++ + + +
Sbjct: 180 GYKNFDIAVKAISKTPHLELSVVGGGAFTSKELSLLNHYLPGRYHGLGRLSDEALNEAYN 239
Query: 230 RALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFLFDSIDEAEKFLR 289
A AL+ PS EGFG+ ILEA S P + V IPE+ D ++DE L
Sbjct: 240 SAYALLYPSSYEGFGIPILEAMSAGCPVISVNVSSIPEVAGDAAILVQKPTVDELVDGL- 298
Query: 290 VLLDLKVNAKVGALGKRVASLYSWD 314
L +K+ G + A+ +SWD
Sbjct: 299 -LAVESERSKLIGYGMKQAAKFSWD 322
>pir||T45962 hypothetical protein F7J8.200 - Arabidopsis thaliana
>gi|6759445|emb|CAB69850.1| (AL137189) putative protein
[Arabidopsis thaliana]
Length = 470
Score = 72.6 bits (175), Expect = 6e-12
Identities = 76/327 (23%), Positives = 137/327 (41%), Gaps = 62/327 (18%)
Query: 18 RHLKEVVERLRRRHSVDVLTYGTVATDVYSVKVPNVFGLRG--------ISFSFLASKKI 69
R+L+E+ + + + V T+ V + Y +V G R + S S +I
Sbjct: 130 RYLREMGDEV-----IVVTTHEGVPEEFYGARV---IGSRSFPCPYYQKVPLSLALSPRI 181
Query: 70 VELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAH-----GSDLEFMSKLPLGRY 124
+ D+IHA G F + + L +P+V++ H +DL + +G+
Sbjct: 182 ISEIARFKPDIIHASSPGVMVFGALAIAKMLSVPIVMSYHTHVPVAADLTLVPSAAIGKD 241
Query: 125 FVKASLREADAVTAVSHFLAKRAISLGAKSVEVISNGVSTCGDRVSKKYIVFLGKVSKYK 184
+ A A+ + + + + + +S E+ GV K
Sbjct: 242 LIAAGATAANQLRLWNKGVDSESFNPRFRSQEMRRIGVE--------------------K 281
Query: 185 GIDEFLELARRFPELEFLIAGEGNLRE--------LPSNVKFLGYVNPDDVLSRALA--- 233
++ + + PE G+G +E +P+ F G + D+ LS+A A
Sbjct: 282 SLELLKSVMDKLPEARIAFIGDGPYKEDLEKLFTGMPA--VFTGTLQGDE-LSQAYASGD 338
Query: 234 -LVLPSKREGFGMVILEANSFSVPALGRKVGGIPELI---RDGKNGFLFD--SIDEAEKF 287
V+PS+ E G+V+LEA S +P + + GGIP++I ++GK GFLF+ +++
Sbjct: 339 VFVMPSESETLGLVVLEAMSSGLPVVAARAGGIPDIIPEDQEGKTGFLFNPGDVEDCVTK 398
Query: 288 LRVLL-DLKVNAKVGALGKRVASLYSW 313
LR LL D + +G + Y W
Sbjct: 399 LRTLLHDRETREIIGKAAREETEKYDW 425
>pir||F70441 capsular polysaccharide biosynthsis protein - Aquifex aeolicus
>gi|2983976|gb|AAC07522.1| (AE000749) capsular
polysaccharide biosynthsis protein [Aquifex aeolicus]
Length = 316
Score = 72.6 bits (175), Expect = 6e-12
Identities = 64/263 (24%), Positives = 123/263 (46%), Gaps = 39/263 (14%)
Query: 66 SKKIVELHEERNYDLIHAHYVGTTSFAGVLA--KRKLGIPLVVTAHGSDLEF----MSKL 119
+K++ E+ + D+++A + ++ G+ ++ G + + H +D + +
Sbjct: 21 AKRLSEVIKSEKPDIVYAFFRSMSTILGLSTFFGKETGTIYLGSVHNTDNYIKYGSLKHI 80
Query: 120 PLGRYFVKASLREADAVTAVSHFLA---KRAISLGAKSVEVISNGVSTCGDRVSKK---- 172
P R +K L + D + VS+ + K+ + ++V+ N + D++ K+
Sbjct: 81 PY-RVMIKVLLEKLDGIVCVSNTVKRDLKQTFWIKDDKLKVVYNLIDI--DKIRKQADES 137
Query: 173 ------YIVFLGKVSKYKGIDEFLE----LARRFPELEFLIAGEGNLRE----------L 212
YI+ +G++ KG L ++ +F +L LI GEG+ + L
Sbjct: 138 INVDFDYIIAVGRLEDQKGYPYMLRAFKLISEKFKDLHLLIIGEGSKKNQVEKLIEELGL 197
Query: 213 PSNVKFLGY-VNPDDVLSRALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRD 271
+ V LGY +NP + RA A ++ S EGFG+V++EA + +P + + + E++ D
Sbjct: 198 KNKVHLLGYQLNPYKYIKRAKAYLMTSIYEGFGLVLVEAMALGIPVIAFDIPAVREVLND 257
Query: 272 GKNGFL--FDSIDEAEKFLRVLL 292
GK G L F I+ K L LL
Sbjct: 258 GKAGVLVPFGDINAFAKGLEKLL 280
>sp|Q48453|YC07_KLEPN HYPOTHETICAL 41.2 KD PROTEIN IN CPS REGION (ORF7)
>gi|747666|dbj|BAA04778.1| (D21242) ORF7 [Klebsiella
pneumoniae]
Length = 358
Score = 72.2 bits (174), Expect = 8e-12
Identities = 81/357 (22%), Positives = 159/357 (43%), Gaps = 55/357 (15%)
Query: 13 RGGVARHLKEVVERLRRRHSVD--VLTYGTVATDVYSVKVPNVFGLRGISFSFLASK--K 68
+GGVA V+ L + +D V+ + + ++Y + +F G + S L+S
Sbjct: 11 KGGVAT----VINNLTENNEIDSHVICPESQSKEIYCAQ-KTLFSRTGRNISSLSSLFLV 65
Query: 69 IVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLV--------VTAHGSDLEFMSKLP 120
I++ + +D+IH H +SFAG + + L+ T H +K
Sbjct: 66 IIKTLKYNKFDVIHLH----SSFAGFIVRALFAFKLINKKKYKVIYTPHCFSFIMDTKKW 121
Query: 121 LGRYFV---KASLREADAVTAVSHFLAKRAISLGAKS--VEVISNGVSTCGD-------- 167
+ ++ + ++ D + A S++ K A+ G ++V+ N VS G
Sbjct: 122 KKKVYIYIERILAKQTDCIIANSYYEYKCAVDAGISKNKIKVVYNAVSLDGQEKLERIKK 181
Query: 168 ------RVSKKYIVFLGKVSKYKGIDEFLELAR--RFPELEFLIAGEGNLREL-----PS 214
+ K I+F+G+ K KG D L + + + F I G+ ++ ++
Sbjct: 182 CNENEVQKEKINILFVGRFDKQKGYDYLLNVIKVADVSKYTFNIIGD-SVHDVFEKIEKE 240
Query: 215 NVKFLGYVNPDDVLSRAL---ALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRD 271
NV + G+V+ ++ + L++PS+ E FG+V +EA + VP + V +PE+I D
Sbjct: 241 NVVYYGWVDNKELPAYFCENDVLLMPSRWESFGLVAVEAQLYGVPVIANNVASLPEVISD 300
Query: 272 GKNGFLFDSIDEAEKFLRVLLDLKV---NAKVGALGKRVASLYSWDDVAIRYERLYR 325
G G L + ++A K + ++ + N K A + ++ + D+ Y ++Y+
Sbjct: 301 GLTGMLV-NFEDANKVVEIMDSHTIHFWNEKKEACREFASNKFRKSDMVNSYVQIYK 356
>pir||E72354 probable hexosyltransferase (EC 2.4.1.-) TM0622 - Thermotoga
maritima (strain MSB8)
>gi|4981142|gb|AAD35706.1|AE001736_4 (AE001736)
lipopolysaccharide biosynthesis protein, putative
[Thermotoga maritima]
Length = 388
Score = 71.8 bits (173), Expect = 1e-11
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 21/180 (11%)
Query: 171 KKYIVFLGKVSKYKG----IDEFLELARRFPELEFLIAGEGNLRE----------LPSNV 216
K ++ + ++S+ K + F + + P LE + G+G LR L V
Sbjct: 196 KTILINVARLSREKNHALLVRAFSKAVQSCPNLELWLVGDGELRRDIEELVKQLGLEEKV 255
Query: 217 KFLGYVNPD--DVLSRALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKN 274
KF G V D ++LS+A VL S EGFG+V+ EA + +P + +GGIPE++ G+
Sbjct: 256 KFFG-VRSDVPELLSQADIFVLSSDYEGFGLVVAEAMAAGLPVIATAIGGIPEILEGGRA 314
Query: 275 GFLFDSIDE---AEKFLRVLLDLKVNAKVGALGKR-VASLYSWDDVAIRYERLYRRVLER 330
G L D A+ + + D K A++ G++ VA + YE+LY +LE+
Sbjct: 315 GILVPPKDVDALAKAIVELARDEKKRAELSDYGRKLVAERFDIRRTVREYEKLYLELLEK 374
>gb|AAD50490.1|AF172324_8 (AF172324) WbnE [Escherichia coli]
Length = 392
Score = 71.8 bits (173), Expect = 1e-11
Identities = 70/259 (27%), Positives = 121/259 (46%), Gaps = 44/259 (16%)
Query: 64 LASKKIVELHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVV-TAHGSDLEFMSKLPLG 122
+A KI + + + D++H H+ T F G +A + GIPL+V T HG + +K
Sbjct: 72 IALYKIYKFLKANDIDIVHTHFA-KTGFLGRVAAKLAGIPLIVHTVHGFPFD-SAKNKYI 129
Query: 123 RYFVKA----SLREADAVTAV---SHFLAKRAISLGAKSVEVISNGV--------STCGD 167
+F K S R AD + + K+ + + V V+ NG+ S C
Sbjct: 130 AFFYKVLEFISARFADIIICLHDGDKETCKKLLHVPESKVLVLPNGIAFTEFFRLSECDK 189
Query: 168 R-------VSKKYIVF--LGKVSKYKG----IDEFLELARRFP--ELEFLIAGEGNLRE- 211
+ + + +VF +G++ + K I+ E+ +P ++ FL+ G+G LR+
Sbjct: 190 KKARTILGIPESSLVFTMVGRLWEQKNPLLLINAAKEVINEYPSDDIIFLLIGDGFLRKE 249
Query: 212 ---------LPSNVKFLGYVNP-DDVLSRALALVLPSKREGFGMVILEANSFSVPALGRK 261
+ + LG+ D+LS + VLPS+ EG + ILEA + +P +
Sbjct: 250 IERIAEREIYHNKIVLLGWRKDIPDILSCSDVFVLPSRWEGMPLAILEAQATGLPCIVSD 309
Query: 262 VGGIPELIRDGKNGFLFDS 280
+ G L++DG NG+LF+S
Sbjct: 310 IPGNNNLVKDGVNGYLFES 328
>pir||S74777 hypothetical protein slr1076 - Synechocystis sp. (strain PCC 6803)
>gi|1652002|dbj|BAA16928.1| (D90901) hypothetical
protein [Synechocystis sp.]
Length = 381
Score = 70.2 bits (169), Expect = 3e-11
Identities = 74/285 (25%), Positives = 123/285 (42%), Gaps = 52/285 (18%)
Query: 75 ERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMSKLPLGRYFVKASLREAD 134
++ DLI + T A L +R +GI AHG D L + +LR AD
Sbjct: 88 QKRPDLIICGHANFTPVAH-LVQRLMGISYWTVAHGVDA-----WNLQNPHIIQALRHAD 141
Query: 135 AVTAVSHFLAKRAI---SLGAKSVEVISNGVSTCGDRVSKKYIVFLGKVS---------- 181
+ AVSH+ R + +L + V V+ N T +++ K L K +
Sbjct: 142 RILAVSHYTRDRLLQEQALDPEKVVVLPNTFDTSRFQIAPKPQSLLEKYNLTPDQQVILT 201
Query: 182 --------KYKGIDEFL----ELARRFPELEFLIAGEGNLR----------ELPSNVKFL 219
+YKG D+ + E+ + P + +LI G+G R +L V
Sbjct: 202 IARLAGEERYKGYDQIIRALPEIIKTIPNIHYLIGGKGGDRPRIEKLIQDLDLEDYVTLA 261
Query: 220 GYVNPDDVLSRALAL----VLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKNG 275
G++ PD+ L+ L +PSK EGFG+V LEA + P +G G + + +G+ G
Sbjct: 262 GFI-PDEELADHYNLCDVFAMPSKGEGFGIVYLEAMACGKPTIGGNQDGAIDALCNGELG 320
Query: 276 FLF--DSIDEAEKFLRVLLD----LKVNAKVGALGKRVASLYSWD 314
L D +DE + +L+ L + + L ++V +Y ++
Sbjct: 321 VLVNPDDLDEISTVITQILEKTYPLPILYQPETLRQKVIEIYGFE 365
>sp|P54490|YQGM_BACSU HYPOTHETICAL 40.8 KDA PROTEIN IN SODA-COMGA INTERGENIC REGION
>gi|7474699|pir||G69956 conserved hypothetical protein
yqgM - Bacillus subtilis >gi|1303860|dbj|BAA12516.1|
(D84432) YqgM [Bacillus subtilis]
>gi|2634924|emb|CAB14421.1| (Z99116) similar to
hypothetical proteins [Bacillus subtilis]
Length = 359
Score = 69.9 bits (168), Expect = 4e-11
Identities = 72/288 (25%), Positives = 124/288 (43%), Gaps = 33/288 (11%)
Query: 72 LHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFM-----SKLPLGRYFV 126
L + +DLIHAH TT+ A K++LG+PL T HG + E + P
Sbjct: 66 LSHNKRFDLIHAHD-DTTAPAAQYLKQRLGLPLAATIHGLESERKKVCREAPHPYRLMTE 124
Query: 127 KASLREADAVTAVSHFLAKRAISLGAKSVEVISNGVSTCGDR------VSKKYIVFLGKV 180
+ + ADA+ +S F+ + K + VI + S ++ ++++++ G+
Sbjct: 125 RLLIESADALIVLSTFMKRSLDKAAHKKITVIPSPASMEEEKGKIPRSMNRRFLFSYGRF 184
Query: 181 SKYKGIDEFLE----LARRFPELEFLIAGEG----------NLRELPSNVKFLGYVNPDD 226
KG+ + L+ L +R P+L ++AGEG L + FL ++N D
Sbjct: 185 VPEKGLSQLLKVFAILKQRQPDLYLVLAGEGPSLSCYEKLAAAYNLKDRIMFLPFLNRKD 244
Query: 227 V---LSRALALVLPSKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFL--FDSI 281
+ LS V PS E FG+ E+ V + + GG + K + F +
Sbjct: 245 IRTLLSHCEMAVFPSSYEPFGLAAQESMEQGVLTVVSQSGGFCDYAVHDKTAIIADFTLV 304
Query: 282 DEAEKFL-RVLLDLKVNAKVGALGK-RVASLYSWDDVAIRYERLYRRV 327
EA L L D + ++ G+ +V L+ + Y +LY R+
Sbjct: 305 QEAADLLDSFLKDREKARRIKEAGRQQVFKLHHPRLIMSSYLQLYERI 352
>pir||C72590 probable hexosyltransferase (EC 2.4.1.-) APE1191 [similarity] -
Aeropyrum pernix (strain K1) >gi|5104863|dbj|BAA80177.1|
(AP000061) 363aa long hypothetical capM protein
[Aeropyrum pernix]
Length = 363
Score = 69.5 bits (167), Expect = 5e-11
Identities = 56/201 (27%), Positives = 99/201 (48%), Gaps = 24/201 (11%)
Query: 143 LAKRAISLGAKSVEVISNGVST----CGDRVSKKYIVFLGKVSKYKGIDEFLELAR---- 194
LAKR + + + V+ NGV G + + I++ G++ YK +D L+ R
Sbjct: 154 LAKR-LGIDPDRIAVVPNGVDLEKYRPGSKDPRPTILWAGRIKMYKNLDHLLKAYRIVKQ 212
Query: 195 RFPELEFLIAGEGN----LREL-----PSNVKFLGYVNPDDVL---SRALALVLPSKREG 242
P+ + +I G G+ +REL P +V FLG ++ + + RA +V S EG
Sbjct: 213 EIPDAQLIIIGTGDQEQKMRELAKKLEPRDVHFLGKMSEQEKIMWMQRAWIIVSTSMIEG 272
Query: 243 FGMVILEANSFSVPALGRKVGGIPELIRDGKNGFLFD--SIDEAEKFLRVLL-DLKVNAK 299
+G+ I EA + +PA+ V G+ + ++ + G L + +I++ K + LL D + K
Sbjct: 273 WGITITEAAACKIPAIAYNVPGLRDSVKHMETGILVEPGNIEQLAKAIAWLLTDNSLRNK 332
Query: 300 VGALGKRVASLYSWDDVAIRY 320
+ A +SWD+ AI +
Sbjct: 333 LSENAYNYAQSFSWDNTAITF 353
>sp|Q48454|YC08_KLEPN HYPOTHETICAL 42.6 KD PROTEIN IN CPS REGION (ORF8)
>gi|747667|dbj|BAA04779.1| (D21242) ORF8 [Klebsiella
pneumoniae]
Length = 373
Score = 69.1 bits (166), Expect = 7e-11
Identities = 65/229 (28%), Positives = 105/229 (45%), Gaps = 33/229 (14%)
Query: 72 LHEERNYDLIHAHYVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMSKLPLGRYFVKASLR 131
+H R+Y LIH + K G + V + L +SK LG+
Sbjct: 132 IHTSRDYYLIHPN----------CKLYKNGSEMSVKSIAVSLWSLSKKILGK-------- 173
Query: 132 EADAVTAVSHFLAKRAISLGA-KSVEV------ISNGVSTCGDRVSKKYIVFLGKVSKYK 184
D +S+++ + I G KS E + + V + K + F+G+++ K
Sbjct: 174 NVDVYVGISNYIKDKHIEAGFFKSTEKYTIYNSVKSNVILDLTAANDKRLGFIGRLTYEK 233
Query: 185 GIDEFLELARRFPELEFLIAGE-----GNLRE--LPSNVKFLGYVNPDDVLSRALALVLP 237
G D+F +LA+ +F+ AGE +L++ L SNV+ LGY DD + + +VLP
Sbjct: 234 GFDQFCKLAQLNKTKKFIAAGEFDKNSASLKQLALDSNVELLGYCPVDDFMQKVDIIVLP 293
Query: 238 SK-REGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFLFDSIDEAE 285
K +E FG V++EA L +VGGI EL R N + + I + +
Sbjct: 294 IKWQEPFGRVVVEAIFAGKVVLTNRVGGITELSRILPNIYFLEDIQDID 342
>pir||S77553 probable hexosyltransferase (EC 2.4.1.-) sll1971 [similarity] -
Synechocystis sp. (strain PCC 6803)
>gi|1652478|dbj|BAA17400.1| (D90905) hypothetical
protein [Synechocystis sp.]
Length = 404
Score = 68.7 bits (165), Expect = 9e-11
Identities = 95/397 (23%), Positives = 171/397 (42%), Gaps = 77/397 (19%)
Query: 1 MRILMVG-HYPPHR-GGVARHLKEVV-ERLRRRHSVDVLTYGTVATD---------VYSV 48
M+IL++ +PP GG+ARH+ E+ E +++ + + ++T T + +Y V
Sbjct: 10 MKILVLAWEFPPRIVGGIARHVAELYPELVQQGYEIHLITVATEESPSQEMVDGIHIYRV 69
Query: 49 KVP---NVFGLRGISFSFLASKKIVELHEERNYDLIHAH--YVGTTSFAGVLAKRKLGIP 103
VP + F + + E++ +D+IHAH VG + + K IP
Sbjct: 70 PVPPSNDFFQWVDNMNRAMEQRGQALFQEQKKFDVIHAHDWLVGDVA---INLKHHGKIP 126
Query: 104 LVVTAHGSDLEFMSKL--PLGRYFVKAS---LREADAVTAVSHFL---AKRAISLGAKSV 155
LVVT H ++ + L RY + V S+++ +RA +
Sbjct: 127 LVVTIHATEYGRYNGLYNDTQRYIAGKEGILIYNGWRVIVCSNYMRHELERAFGTPWDKI 186
Query: 156 EVISNGVSTCGDRVSKKY---------------------IVFLGKVSKYKGIDEFLELAR 194
+VI NG+ R KK+ + ++G+++ KGI L A
Sbjct: 187 DVIYNGI-----RPEKKHRRPDFDYRNFRRKFAEDGEKIVYYVGRMTYEKGISVLLTAAP 241
Query: 195 RFPE-----LEFLIAGEGN---LRELPSNVK------FLGYVNPDDV---LSRALALVLP 237
+ E ++F+I G GN L++L N+ F G+++ +D+ + A V P
Sbjct: 242 QVLEALNDQVKFVIIGGGNTDRLKQLAWNLGIWEHCFFTGFMSDEDLDKFQTIADCAVFP 301
Query: 238 SKREGFGMVILEANSFSVPALGRKVGGIPELIRDGKNGFLFDSIDEAEKFLRVLLDLKVN 297
S E FG+V LE+ + VP + GG+ E++R G + + + + +L++ N
Sbjct: 302 SLYEPFGIVALESFAARVPVVVSNTGGLAEVVRHHSTGIVTQT-NNPDSLAHGILEILSN 360
Query: 298 AK-----VGALGKRVASLYSWDDVAIRYERLYRRVLE 329
V A K + ++W +A +Y RV+E
Sbjct: 361 PSLAKQLVEAAYKDLGIRFNWSKLAKETAAIYERVVE 397
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.141 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113948973
Number of Sequences: 2977
Number of extensions: 4556779
Number of successful extensions: 11521
Number of sequences better than 1.0e-10: 50
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 11431
Number of HSP's gapped (non-prelim): 55
length of query: 330
length of database: 189,106,746
effective HSP length: 56
effective length of query: 274
effective length of database: 155,591,474
effective search space: 42632063876
effective search space used: 42632063876
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)