BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1302 (PAB1302) DE:SUA5 RELATED PROTEIN
(340 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75007 sua5 related protein PAB1302 - Pyrococcus abyssi (st... 675 0.0
pir||D71154 hypothetical protein PH0435 - Pyrococcus horikoshii ... 553 e-156
dbj|BAB07490.1| (AP001519) unknown conserved protein [Bacillus h... 336 3e-91
sp|P39153|YWLC_BACSU HYPOTHETICAL 37.0 KD PROTEIN IN SPOIIR-GLYC... 317 1e-85
emb|CAB57638.1| (Y18930) hypothetical protein [Sulfolobus solfat... 313 2e-84
gb|AAK40968.1| SUA5 related conserved hypothetical protein [Sulf... 313 2e-84
pir||D72469 probable Sua5 protein APE2397 - Aeropyrum pernix (st... 308 7e-83
pir||E72324 conserved hypothetical protein - Thermotoga maritima... 287 1e-76
pir||T41641 translation initiation protein SUA5-YRDC-YCIO-YWLC h... 247 1e-64
gi|6321269 translation initiation protein; Sua5p [Saccharomyces ... 240 2e-62
emb|CAC11447.1| (AL445063) sua5 related protein [Thermoplasma ac... 237 1e-61
pir||T44498 hypothetical protein [imported] - Thermomonospora fu... 236 2e-61
pir||G82243 conserved hypothetical protein VC1079 [imported] - V... 224 9e-58
gi|11498387 conserved hypothetical protein [Archaeoglobus fulgid... 210 1e-53
pir||E70191 conserved hypothetical protein BB0734 - Lyme disease... 201 7e-51
pir||H71646 hypothetical protein RP848 - Rickettsia prowazekii >... 182 5e-45
gi|11497366 conserved hypothetical protein [Borrelia burgdorferi... 162 4e-39
sp|Q10618|YD01_MYCTU HYPOTHETICAL 22.6 KDA PROTEIN RV1301 >gi|74... 134 1e-30
gb|AAG20422.1| (AE005114) Vng2312c [Halobacterium sp. NRC-1] 132 5e-30
pir||C69093 conserved hypothetical protein MTH1692 - Methanobact... 131 9e-30
emb|CAB94533.1| (AL359152) conserved hypothetical protein [Strep... 130 2e-29
sp|P45831|YD01_MYCLE HYPOTHETICAL 22.7 KDA PROTEIN IN RFE-HEMK I... 121 1e-26
sp|Q60369|Y062_METJA HYPOTHETICAL PROTEIN MJ0062 >gi|2128103|pir... 111 2e-23
pir||G81704 conserved hypothetical protein TC0414 [imported] - C... 108 1e-22
pir||C83644 conserved hypothetical protein PA0022 [imported] - P... 107 2e-22
pir||B71552 probable sua5-related protein - Chlamydia trachomati... 103 3e-21
pir||E82370 Sua5/YciO/YrdC family protein VC0054 [imported] - Vi... 99 9e-20
sp|P45748|YRDC_ECOLI 20.8 KDA PROTEIN IN AROE-SMG INTERGENIC REG... 98 1e-19
gb|AAA58079.1| (U18997) ORF_f176 [Escherichia coli] 96 8e-19
pir||E70357 conserved hypothetical protein aq_651 - Aquifex aeol... 96 8e-19
sp|P44807|YRDC_HAEIN HYPOTHETICAL PROTEIN HI0656 >gi|1074469|pir... 82 1e-14
sp|P57561|Y494_BUCAI HYPOTHETICAL PROTEIN BU494 >gi|10039153|dbj... 81 2e-14
pir||D81000 conserved hypothetical protein NMB2150 [imported] - ... 80 3e-14
pir||A82018 hypothetical protein NMA0237 [imported] - Neisseria ... 80 3e-14
dbj|BAB09832.1| (AB005246) gene_id:MUP24.1~pir||T31603~similar t... 80 5e-14
pir||S74580 hypothetical protein sll0216 - Synechocystis sp. (st... 79 6e-14
pir||S75670 hypothetical protein sll1866 - Synechocystis sp. (st... 78 1e-13
pir||T31603 hypothetical protein Y48C3A.u - Caenorhabditis elega... 78 1e-13
pir||H75343 SUA5-related protein - Deinococcus radiodurans (stra... 76 6e-13
pir||A82746 conserved hypothetical protein XF0919 [imported] - X... 75 9e-13
sp|P45103|YCIO_HAEIN HYPOTHETICAL PROTEIN HI1198 >gi|1074679|pir... 75 1e-12
pir||C72098 Sua5/YciO/YrdC family protein CP0489 [imported] - Ch... 72 8e-12
pir||F64874 probable translation factor yciO - Escherichia coli ... 71 2e-11
sp|P45847|YCIO_ECOLI 23.2 KDA PROTEIN IN TRPL-BTUR INTERGENIC RE... 71 2e-11
gb|AAB59987.1| (U18111) ORF1 [Escherichia coli] 69 5e-11
pir||B83244 conserved hypothetical protein PA3199 [imported] - P... 69 7e-11
>pir||F75007 sua5 related protein PAB1302 - Pyrococcus abyssi (strain Orsay)
>gi|5459014|emb|CAB50500.1| (AJ248288) SUA5 RELATED
PROTEIN [Pyrococcus abyssi]
Length = 340
Score = 675 bits (1722), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MTIIINVRERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPA 60
MTIIINVRERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPA
Sbjct: 1 MTIIINVRERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPA 60
Query: 61 DNPLIIHIASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAV 120
DNPLIIHIASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAV
Sbjct: 61 DNPLIIHIASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAV 120
Query: 121 RMPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVE 180
RMPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVE
Sbjct: 121 RMPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVE 180
Query: 181 STVIDLTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAE 240
STVIDLTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAE
Sbjct: 181 STVIDLTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAE 240
Query: 241 VIVVEGPRDKVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKAL 300
VIVVEGPRDKVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKAL
Sbjct: 241 VIVVEGPRDKVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKAL 300
Query: 301 RHMDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRIIKV 340
RHMDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRIIKV
Sbjct: 301 RHMDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRIIKV 340
>pir||D71154 hypothetical protein PH0435 - Pyrococcus horikoshii
>gi|3256838|dbj|BAA29521.1| (AP000002) 340aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 340
Score = 553 bits (1409), Expect = e-156
Identities = 268/339 (79%), Positives = 311/339 (91%)
Query: 1 MTIIINVRERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPA 60
MTIIIN+R ++E K+RIAA IREGKLVAFPTETVYGLGA+AL+E AV+RIFEAKGRPA
Sbjct: 1 MTIIINMRSGVDEVKLRIAAKLIREGKLVAFPTETVYGLGADALNERAVRRIFEAKGRPA 60
Query: 61 DNPLIIHIASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAV 120
DNPLI+HIA F Q+ LA+E+PEEA++L +RFWPGPLT+VLP+ +VVP V TGGLDTVA+
Sbjct: 61 DNPLILHIAKFSQVYELAREVPEEAKVLVERFWPGPLTIVLPRKDVVPDVTTGGLDTVAI 120
Query: 121 RMPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVE 180
RMPA+EIALKLIELS +PIAAPSANISGKPSPTSA HVA+DFYGKIECIIDGGETRIGVE
Sbjct: 121 RMPANEIALKLIELSGKPIAAPSANISGKPSPTSAEHVADDFYGKIECIIDGGETRIGVE 180
Query: 181 STVIDLTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAE 240
STVIDLTE PPVLLRPGGLPLEEIEKVIG++RIHPAV+GK VDT K+PGMKY+HYAP+AE
Sbjct: 181 STVIDLTEHPPVLLRPGGLPLEEIEKVIGKVRIHPAVFGKKVDTPKSPGMKYKHYAPNAE 240
Query: 241 VIVVEGPRDKVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKAL 300
VIVVEGPR+KV+ KI EL+ + KE GKKVGVIGS SY+ADE F+LG +VEE+A+NLFKAL
Sbjct: 241 VIVVEGPREKVKGKITELVKELKERGKKVGVIGSESYNADEFFFLGSSVEEVAKNLFKAL 300
Query: 301 RHMDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRIIK 339
R+MD+ GVDV++AEGVEE+GLGLAVMNRLRKASGY+I+K
Sbjct: 301 RYMDKAGVDVVIAEGVEERGLGLAVMNRLRKASGYKIVK 339
>dbj|BAB07490.1| (AP001519) unknown conserved protein [Bacillus halodurans]
Length = 348
Score = 336 bits (852), Expect = 3e-91
Identities = 176/331 (53%), Positives = 230/331 (69%), Gaps = 12/331 (3%)
Query: 15 KIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQL 74
+I+ AA +I++G+LVA PTETVYGLGANAL + AV++IF AKGRP+DNPLI+HI+ EQL
Sbjct: 23 EIKEAALWIKKGELVALPTETVYGLGANALSDEAVQKIFIAKGRPSDNPLIVHISRKEQL 82
Query: 75 EVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIEL 134
L IP+ A +L FWPGPLT++ PK E V V+T GLDTVAVRMP+H +A LIE
Sbjct: 83 LRLVSHIPDSANLLINAFWPGPLTIIFPKGEEVSTVVTAGLDTVAVRMPSHPVAQALIEA 142
Query: 135 SERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLL 194
+ PIAAPSAN SGKPSPTSA HV D GKI ++DGG T GVESTVID T PP+L
Sbjct: 143 ANVPIAAPSANRSGKPSPTSATHVLADLRGKIAGVVDGGPTAEGVESTVIDCTTTPPILY 202
Query: 195 RPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVIVVEGPRDKVRRK 254
RPGG+ E++E V+G IRI PA+ GK + K+PGMKY HYAP E+ +VE +
Sbjct: 203 RPGGVTREQLEAVLGPIRIDPALLGKD-EQPKSPGMKYTHYAPEGELTLVEN-----QAA 256
Query: 255 IEELIAKFKEEGKKVGVIGSG----SYDADEVFYLG--DTVEEIARNLFKALRHMDRTGV 308
I+ + K++E+ KVG++ + YDAD + +G + + E+A NL+ LR D V
Sbjct: 257 IQTFVDKWREKQFKVGIMATDEHKQDYDADVILSVGSRNDLAEVAHNLYHVLRQFDEQKV 316
Query: 309 DVILAEGVEEKGLGLAVMNRLRKASGYRIIK 339
DVI+ E +G+G+A+MNRL KA+G RII+
Sbjct: 317 DVIIGETFPREGIGVAIMNRLEKAAGGRIIQ 347
>sp|P39153|YWLC_BACSU HYPOTHETICAL 37.0 KD PROTEIN IN SPOIIR-GLYC INTERGENIC REGION
>gi|2127244|pir||I40476 conserved hypothetical protein
ywlC - Bacillus subtilis >gi|556881|emb|CAA86105.1|
(Z38002) Similar to Saccharomyces cerevisiae SUA5
protein [Bacillus subtilis] >gi|2636220|emb|CAB15712.1|
(Z99122) alternate gene name: ipc-29d~similar to
hypothetical proteins [Bacillus subtilis]
>gi|1095419|prf||2108403D ipc-29d gene [Bacillus
subtilis]
Length = 346
Score = 317 bits (804), Expect = 1e-85
Identities = 172/332 (51%), Positives = 228/332 (67%), Gaps = 12/332 (3%)
Query: 15 KIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQL 74
+I AA +RE ++VAFPTETVYGLGANA + +AVK+I+EAKGRP+DNPLI+HIA QL
Sbjct: 20 QIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIADISQL 79
Query: 75 EVLAKEIPEEAEMLAKRFWPGPLTLVLP-KSEVVPRVITGGLDTVAVRMPAHEIALKLIE 133
E L PE+A+ L KRFWPG LTL+LP K + + +T GL+TVA+RMP H +AL LI
Sbjct: 80 EDLTGPAPEKAKTLMKRFWPGALTLILPCKPDALSPRVTAGLETVAIRMPDHPLALALIR 139
Query: 134 LSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVL 193
S PIAAPSAN+SGKPSPT A HVA D G+I I+DGG T IGVESTV+ + PVL
Sbjct: 140 ESGLPIAAPSANLSGKPSPTKAEHVAHDLDGRIAGIVDGGPTGIGVESTVLSCADDIPVL 199
Query: 194 LRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVIVVEGPRDKVRR 253
LRPGG+ E+IE VIG I + + ++ + +PGMKY HYAP+A + + EG +
Sbjct: 200 LRPGGITKEQIEAVIGPIHVDKGLSDQN-EKPISPGMKYTHYAPTAPLAICEGSPE---- 254
Query: 254 KIEELIAKFKEEGKKVGVI----GSGSYDADEVFYLG--DTVEEIARNLFKALRHMDRTG 307
+I+ LI ++++ G++VGV+ +G Y AD V G +E +A L+ ALR D
Sbjct: 255 RIQHLIQEYQQGGRRVGVLTTEEKAGVYSADYVKSCGRRAQLETVAAGLYDALRSFDENK 314
Query: 308 VDVILAEGVEEKGLGLAVMNRLRKASGYRIIK 339
VD I+AE + G+GLA+MNRL KA+G R+I+
Sbjct: 315 VDFIIAESFPDTGVGLAIMNRLMKAAGGRVIR 346
>emb|CAB57638.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 358
Score = 313 bits (793), Expect = 2e-84
Identities = 170/338 (50%), Positives = 224/338 (65%), Gaps = 24/338 (7%)
Query: 15 KIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQL 74
KI+ AA I+ G V FPTETVYGLGANALD AVK+IF AK RP DNPLI+HI++ +QL
Sbjct: 16 KIKKAANVIKAGGTVVFPTETVYGLGANALDPEAVKKIFIAKNRPMDNPLIVHISNIDQL 75
Query: 75 EVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIEL 134
+AK+IP++ L WPGPLT VL K+E VP+ TGGL+TVAVRMPAH +AL LI
Sbjct: 76 YEVAKDIPKKIINLVNIVWPGPLTFVLKKTEKVPKETTGGLETVAVRMPAHPVALALINE 135
Query: 135 SERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLL 194
S PIAAPSAN++ KPSPT HV +D YGK++ I+D GET GVESTVI++T PPVLL
Sbjct: 136 SGVPIAAPSANLATKPSPTRVEHVIDDIYGKVDVILDSGETFFGVESTVINVTVDPPVLL 195
Query: 195 RPGGLPLEEIEKVIGEIRIHPAVYGKS-VDTAKAPGMKYRHYAPSAEVIVVEGPRDKVRR 253
RPG +EE+E++ G++ + G + D A APGMKY+HYAP+ ++VVE R +R
Sbjct: 196 RPGPFSVEELERLFGKVVVPEQAKGTAEFDVALAPGMKYKHYAPTKRLLVVEN-RSVLRG 254
Query: 254 KIEELIAKF-------------KEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKAL 300
I EL + + G+K+ +I GS + + EI+RNLF +
Sbjct: 255 VINELQKRSCRIALLCASEVCKQFRGEKIEIIELGS---------ENNLYEISRNLFDSF 305
Query: 301 RHMDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRII 338
R +D++ VD+ + + EKG+GLA+MNR RKASG+ I
Sbjct: 306 RKLDKSNVDIGVIHSISEKGIGLAIMNRTRKASGFSSI 343
>gb|AAK40968.1| SUA5 related conserved hypothetical protein [Sulfolobus
solfataricus]
Length = 358
Score = 313 bits (793), Expect = 2e-84
Identities = 170/338 (50%), Positives = 224/338 (65%), Gaps = 24/338 (7%)
Query: 15 KIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQL 74
KI+ AA I+ G V FPTETVYGLGANALD AVK+IF AK RP DNPLI+HI++ +QL
Sbjct: 16 KIKKAANVIKAGGTVVFPTETVYGLGANALDPEAVKKIFIAKNRPMDNPLIVHISNIDQL 75
Query: 75 EVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIEL 134
+AK+IP++ L WPGPLT VL K+E VP+ TGGL+TVAVRMPAH +AL LI
Sbjct: 76 YEVAKDIPKKIINLVNIVWPGPLTFVLKKTEKVPKETTGGLETVAVRMPAHPVALALINE 135
Query: 135 SERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLL 194
S PIAAPSAN++ KPSPT HV +D YGK++ I+D GET GVESTVI++T PPVLL
Sbjct: 136 SGVPIAAPSANLATKPSPTRVEHVIDDIYGKVDVILDSGETFFGVESTVINVTVDPPVLL 195
Query: 195 RPGGLPLEEIEKVIGEIRIHPAVYGKS-VDTAKAPGMKYRHYAPSAEVIVVEGPRDKVRR 253
RPG +EE+E++ G++ + G + D A APGMKY+HYAP+ ++VVE R +R
Sbjct: 196 RPGPFSVEELERLFGKVVVPEQAKGTAEFDVALAPGMKYKHYAPTKRLLVVEN-RSVLRG 254
Query: 254 KIEELIAKF-------------KEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKAL 300
I EL + + G+K+ +I GS + + EI+RNLF +
Sbjct: 255 VINELQKRSCRIALLCASEVCKQFRGEKIEIIELGS---------ENNLYEISRNLFDSF 305
Query: 301 RHMDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRII 338
R +D++ VD+ + + EKG+GLA+MNR RKASG+ I
Sbjct: 306 RKLDKSNVDIGVIHSISEKGIGLAIMNRTRKASGFSSI 343
>pir||D72469 probable Sua5 protein APE2397 - Aeropyrum pernix (strain K1)
>gi|5106101|dbj|BAA81412.1| (AP000064) 367aa long
hypothetical Sua5 protein [Aeropyrum pernix]
Length = 367
Score = 308 bits (780), Expect = 7e-83
Identities = 169/348 (48%), Positives = 225/348 (64%), Gaps = 20/348 (5%)
Query: 9 ERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHI 68
ER + I AA +R G LVAFPTETVYGLGA+AL+ A RIFE KGRP DNPLI+H+
Sbjct: 19 ERPDRRAIERAAEVLRRGGLVAFPTETVYGLGADALNPRAAARIFEVKGRPPDNPLIVHV 78
Query: 69 ASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIA 128
+S E +A EIP +A L ++ WPGPLTLVLP+ VVP ++T GL+TVAVRMPAH++A
Sbjct: 79 SSLEMARTVA-EIPGKALRLVEKLWPGPLTLVLPRKPVVPDIVTAGLETVAVRMPAHKVA 137
Query: 129 LKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTE 188
L+L++ + RP+AAPSAN SG+PSPTS HV D ++ I+D GET GVEST+IDLT
Sbjct: 138 LELVKAAGRPVAAPSANPSGRPSPTSGEHVIRDLDCMVDVILDAGETYFGVESTIIDLTR 197
Query: 189 WPPVLLRPGGLPLEEIEKVIGE-IRIHPAVYG-KSVDTAKAPGMKYRHYAPSAEVIVVEG 246
PPVLLRPG +P+E +E+++ E I + P G ++ D APGMKYRHYAP +I+V+
Sbjct: 198 TPPVLLRPGPIPVEVLERLLEEKILVPPEARGLRAADRPLAPGMKYRHYAPDTPLILVDT 257
Query: 247 PRDKVRRKIEELIAKF-KEEGKKVGVIGSG-------------SYDADEVFYLGDTVEE- 291
V R +E + + + G +V ++G + +F LG +
Sbjct: 258 SPGAVERIVEAAVREVARARGLRVALVGPDELVDVVALLLRLRGVEPAAIFRLGPLADTT 317
Query: 292 -IARNLFKALRHMDRTG-VDVILAEGVEEKGLGLAVMNRLRKASGYRI 337
AR LFK LR +D G +DV + E+G+GLAVMNRLRKA+ R+
Sbjct: 318 VAARRLFKTLRRIDELGNIDVAIVLPFPERGIGLAVMNRLRKAASRRV 365
>pir||E72324 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981386|gb|AAD35934.1|AE001752_1 (AE001752)
conserved hypothetical protein [Thermotoga maritima]
Length = 335
Score = 287 bits (727), Expect = 1e-76
Identities = 162/338 (47%), Positives = 222/338 (64%), Gaps = 13/338 (3%)
Query: 1 MTIIINVRERIEEWKI-RIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRP 59
MT ++ V + K+ + AA +R G+++ FPTETVYG+GA+A +E A K+IF+ K RP
Sbjct: 1 MTRVLKVDPLFPDEKVLKEAAELLRNGEVIIFPTETVYGIGADAYNEEACKKIFKLKERP 60
Query: 60 ADNPLIIHIASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVL-PKSEVVPRVITGGLDTV 118
ADNPLI+HI SF+QLE +A+ + L K+FWPGPLT++ KSE +P V+T L TV
Sbjct: 61 ADNPLIVHIHSFKQLEEIAEGYEPHLDFL-KKFWPGPLTVIFRKKSEKIPPVVTADLPTV 119
Query: 119 AVRMPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIG 178
AVRMPAH +ALKLIEL PIAAPSANISG+PS T+ HV EDF GK++ IID G+T G
Sbjct: 120 AVRMPAHPVALKLIELFGHPIAAPSANISGRPSATNVKHVIEDFMGKVKLIIDAGDTPFG 179
Query: 179 VESTVIDLTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAV-YGKSVDTAKAPGMKYRHYAP 237
+EST++DLT+ PVLLRPG + +E ++++ E+ + V G APGMKYRHYAP
Sbjct: 180 LESTIVDLTKEKPVLLRPGPVEVERLKELFPELVVPDFVRKGNFKGRPLAPGMKYRHYAP 239
Query: 238 SAEVIVVEG--PRDKVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARN 295
+I+VE ++V +K + + EE K++ YD V IA+N
Sbjct: 240 LKPLILVEDLTKMEEVLKKYPDHVVICVEERKEL-------YDDRIVVGSLKNPYSIAQN 292
Query: 296 LFKALRHMDRTGVDVILAEGVEEKGLGLAVMNRLRKAS 333
+F ALR ++ G + I+ EG EE+G+ AVMNRLRKA+
Sbjct: 293 IFSALREAEKMGKEYIIVEGFEERGILFAVMNRLRKAA 330
>pir||T41641 translation initiation protein SUA5-YRDC-YCIO-YWLC homolog -
fission yeast (Schizosaccharomyces pombe)
>gi|4164422|emb|CAA22839.1| (AL035247) similarity to
yeast translation initiation protein Sua5p
[Schizosaccharomyces pombe]
Length = 408
Score = 247 bits (625), Expect = 1e-64
Identities = 150/344 (43%), Positives = 201/344 (57%), Gaps = 39/344 (11%)
Query: 29 VAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVL-------AKE- 80
VAFPTETVYGLGA+A AV I++AK RPADNPLI+H+AS +QL L AK
Sbjct: 56 VAFPTETVYGLGADARRTEAVLSIYKAKNRPADNPLIVHVASLDQLRRLLLSAYPKAKSE 115
Query: 81 -----------IPEEAEMLAKRFWPGPLTLVLP----KSEVVPRVITGGLDTVAVRMPAH 125
IP+ L K+FWPGPL+++LP + V ++T G T AVRMP H
Sbjct: 116 VKNQAHDSEEIIPKVYLPLIKKFWPGPLSILLPVVDEANPPVSPIVTAGQKTFAVRMPQH 175
Query: 126 EIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVID 185
+AL LI +S+ P+AAPSAN S +PSPT A HV D GKI I+DGG +GVESTV++
Sbjct: 176 PVALALISISDSPLAAPSANASTRPSPTLAKHVYNDLQGKIPLILDGGACGVGVESTVVN 235
Query: 186 LTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVD-----TAKAPGMKYRHYAPSAE 240
PPV+LRPGG+ LEEI+ G K D + PGMKYRHY+P+A+
Sbjct: 236 GLCDPPVILRPGGISLEEIQSSGGAWERTKVFVAKKSDMETDFIPQTPGMKYRHYSPTAK 295
Query: 241 VIV-VEGPRDKVRRKIEELIAK--FKEEGKKVGVIGSGSYDADE--------VFYLGDTV 289
V++ V E+ +++ +E +K+GV+ S ++ + ++G
Sbjct: 296 VLLFVNYTESDAYGVFEKYLSEQGITKEKQKIGVLCSKRWNEESFPSHCPFVFLHMGRDG 355
Query: 290 EEIARNLFKALRHMDRTGVDVILAEGVEEKGLGLAVMNRLRKAS 333
EI +NLF LR +D GVD +L EGV E+ GLA+MNRL KA+
Sbjct: 356 HEITKNLFAQLRDLDLQGVDFVLVEGVSEENEGLAIMNRLGKAA 399
>gi|6321269 translation initiation protein; Sua5p [Saccharomyces cerevisiae]
>gi|417826|sp|P32579|SUA5_YEAST SUA5 PROTEIN
>gi|542359|pir||S41991 SUA5 protein - yeast
(Saccharomyces cerevisiae) >gi|4566|emb|CAA45598.1|
(X64319) essential for normal growth and mitochondrial
function [Saccharomyces cerevisiae]
>gi|971384|emb|CAA59760.1| (X85757) G1660 [Saccharomyces
cerevisiae] >gi|1322770|emb|CAA96881.1| (Z72691) ORF
YGL169w [Saccharomyces cerevisiae]
Length = 426
Score = 240 bits (606), Expect = 2e-62
Identities = 159/372 (42%), Positives = 211/372 (55%), Gaps = 52/372 (13%)
Query: 19 AAGFIRE-GKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE-- 75
AA IR+ + VAFPTETVYGLG +AL++N+V I+ AK RP+DNPLI H++S +QL
Sbjct: 55 AARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYRAKNRPSDNPLITHVSSIDQLNRK 114
Query: 76 ----------VLAKEIPEEAEMLAKRFWPGPLTLVLP----KSEVVPRVITGGLDTVAVR 121
L IP L WPGPLT++LP + + ++ T T AVR
Sbjct: 115 VFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALSKLTTADQPTFAVR 174
Query: 122 MPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVES 181
+PA+ +A LI LS+ PIAAPSAN S +PSPT A HV D KI I+DGG ++GVES
Sbjct: 175 IPANPVARALIALSDTPIAAPSANASTRPSPTLASHVYHDLKDKIPIILDGGACKVGVES 234
Query: 182 TVIDLTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSV----DTAKAPGMKYRHYAP 237
TV+D PP LLRPGG EEI K+ GE V K + + PGMKYRHY+P
Sbjct: 235 TVVDGLCNPPTLLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKGEKVRTPGMKYRHYSP 294
Query: 238 SAEVIVV----EGP--------RDKVRRKIEELIAKFKEEGKKVGVIGSGSY-DAD---E 281
SA+V+++ EG ++++R IE + K KK+ ++ S D+D +
Sbjct: 295 SAKVVLLVPHCEGDGILKGVDRMERLKRLIETEL-KANSNIKKIAILTSLKLRDSDLQSK 353
Query: 282 VF-------------YLGDTVEEIARNLFKALRHMDRTG-VDVILAEGVEEKGLGLAVMN 327
+F LG + EEI NLF ALR +D VD+I EG+ E+G GLAVMN
Sbjct: 354 IFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFVEGINEEGEGLAVMN 413
Query: 328 RLRKASGYRIIK 339
RLRKA+ I+
Sbjct: 414 RLRKAAANNCIQ 425
>emb|CAC11447.1| (AL445063) sua5 related protein [Thermoplasma acidophilum]
Length = 352
Score = 237 bits (599), Expect = 1e-61
Identities = 154/356 (43%), Positives = 214/356 (59%), Gaps = 38/356 (10%)
Query: 1 MTIIINV-RERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRP 59
MT II++ R +I A +R G V FPTETVYGLGA A + A K+IF AKGRP
Sbjct: 1 MTRIIHIDRSDYRRDQIVDAVDALRSGGTVVFPTETVYGLGALASNPEACKKIFIAKGRP 60
Query: 60 ADNPLIIHIASFEQLEVLAKEIPEEAEMLA--KRFWPGPLTLVLPKSEVVPRVITGGLDT 117
+DNPLI+HI+S EQ + P+++ + + WPGPLT+V+ K++ + V+T GL T
Sbjct: 61 SDNPLIVHISSMEQF--FSYSDPDDSYPIEGLNKAWPGPLTVVVRKAQGISDVVTAGLPT 118
Query: 118 VAVRMPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRI 177
VA+RMP IA LIE++ PIAAPSANIS +PS T + G+++ IID G TR
Sbjct: 119 VAIRMPDDPIAHDLIEMAG-PIAAPSANISTRPSITDSRDAIRFLDGRVDVIIDAGPTRF 177
Query: 178 GVESTVIDLTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYG---KSVDTAK---APGMK 231
G+EST+ID+T+ P LLRPG +E++E V G P VYG + + AK PGMK
Sbjct: 178 GIESTIIDITKRPAELLRPGSYAIEDLEPVFG-----PIVYGDVARGLGEAKIAITPGMK 232
Query: 232 YRHYAPSAEVIVVEGPRDKVRRKI----EELIAKFKEE----GKKVGVIGSGSYDADEVF 283
YRHY+PS ++I+ E R+ R+ + E+++ EE KK +IG+ D D
Sbjct: 233 YRHYSPSTKLILAE-TREVFRQILDTVDEDMVVLATEEMVDGHKKAIIIGT---DRD--- 285
Query: 284 YLGDTVEEIARNLFKALRHMDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRIIK 339
+ +A NLF + +D VD+ L EE+G+G A+MNR+RKAS YR +K
Sbjct: 286 -----LYSVAHNLFSSFIALDDMHVDLALIHPFEERGIGFALMNRIRKAS-YRTVK 335
>pir||T44498 hypothetical protein [imported] - Thermomonospora fusca
>gi|5107073|gb|AAD39949.1|AF144563_3 (AF144563) unknown
[Thermobifida fusca]
Length = 335
Score = 236 bits (597), Expect = 2e-61
Identities = 138/326 (42%), Positives = 193/326 (58%), Gaps = 27/326 (8%)
Query: 19 AAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLA 78
A +R G LVAFPTETVYGLGA+A + AV RIF AKGRPAD+PLI+H+AS E A
Sbjct: 23 AVRVLRAGGLVAFPTETVYGLGADAANPAAVARIFAAKGRPADHPLIVHVASAESARDWA 82
Query: 79 KEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERP 138
P A LA FWPGPLTL+LP+S VP +TGG TV +R+P +AL L+E
Sbjct: 83 ATFPPLARTLADAFWPGPLTLILPRSAQVPDAVTGGRATVGLRVPDQPVALALLERFGGG 142
Query: 139 IAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLRPGG 198
IAAPSAN G+ SPT+A HVA D +++ ++DGG +GVEST++++ + +LR GG
Sbjct: 143 IAAPSANRFGRVSPTTAAHVAADLGDRVDLVLDGGPCTVGVESTIVEVADGRLTVLRTGG 202
Query: 199 LPLEEIEKVIGEIRIHPAVYGKSVDT-----AKAPGMKYRHYAPSAEVIVVEGPRDKVRR 253
+ +++ AV G VDT A+APGM HYAP+A V++ E
Sbjct: 203 ITPDDL----------AAVTGAPVDTTPTGPARAPGMLAAHYAPAARVVLAEA------A 246
Query: 254 KIEELIAKFKEEGKKVGVIGSGSYDADE------VFYLGDTVEEIARNLFKALRHMDRTG 307
+ + +A++ E+G +V V+ + + V + + AR L++ LR +D G
Sbjct: 247 EAADTVAQWVEKGHRVAVLAETATVPENLPEGVVVLPSPASARDYARVLYQRLRDVDAAG 306
Query: 308 VDVILAEGVEEKGLGLAVMNRLRKAS 333
DV++A E G+GLAV +RL +AS
Sbjct: 307 ADVVVAIPPEPAGIGLAVRDRLLRAS 332
>pir||G82243 conserved hypothetical protein VC1079 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655547|gb|AAF94238.1|
(AE004189) conserved hypothetical protein [Vibrio
cholerae]
Length = 329
Score = 224 bits (566), Expect = 9e-58
Identities = 127/321 (39%), Positives = 192/321 (59%), Gaps = 17/321 (5%)
Query: 16 IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
I AA +++G+LVA PTETVYGL A+A AVK+IF AKGRPA++PLI+H+ S EQL
Sbjct: 22 IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLS 81
Query: 76 VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELS 135
A +I EA LA+ FWPGPLTL+LPK++ V V+TGGL++V +R+PAH + L +++
Sbjct: 82 EWATDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTH 141
Query: 136 ERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLR 195
+AAPSAN K SPTSA V + G++ ++DGGE + G+EST++DLT P +LR
Sbjct: 142 RLAVAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQHGLESTIVDLTSKPFRVLR 201
Query: 196 PGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVIVVEGPRDKVRRKI 255
G + E+ V+G+ + P V+ +V PG HY P + V++ ++ +
Sbjct: 202 AGPITASELSAVLGQEVLQPQVHQVAV-----PGNVDSHYQPKTRLRVIDDLARELATQS 256
Query: 256 EELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEE---IARNLFKALRHMDRTGVDVIL 312
+EL ++ ++ + A E L +E + L+++L +D+ GVD I
Sbjct: 257 DEL---------RIALLNLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDEIW 307
Query: 313 AEGVEEKGLGLAVMNRLRKAS 333
E + LAV +RLR+A+
Sbjct: 308 LERPPQGEAWLAVHDRLRRAA 328
>gi|11498387 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429864|pir||E69347 conserved hypothetical protein
AF0781 - Archaeoglobus fulgidus
>gi|2649831|gb|AAB90461.1| (AE001051) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 309
Score = 210 bits (530), Expect = 1e-53
Identities = 122/325 (37%), Positives = 197/325 (60%), Gaps = 27/325 (8%)
Query: 16 IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
IR A +R G +VAFPTETVYG+G +A +E A++R++E KGR + P I+ + S + +
Sbjct: 12 IRKAVAVLRAGGIVAFPTETVYGMGCDATNEEALRRLYEIKGRSLNKPFIVGVWSRDYVG 71
Query: 76 VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELS 135
+A E+ E AE L + F+PGPLTLVL V+P +++ +AVRMPAHE+ L+L+E+
Sbjct: 72 KIA-EVDERAEKLMEAFFPGPLTLVLKSKGVMPSLLSPK-GKIAVRMPAHEVPLQLMEML 129
Query: 136 ERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLR 195
+PI PSAN+SG+PS HV E+ +I+ ++ GE ++GVEST++DLTE P +LR
Sbjct: 130 RKPIVVPSANLSGRPSLMRWEHVVEELGSRIDAVVK-GECKVGVESTIVDLTETPAKVLR 188
Query: 196 PGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVIVVEGPRDKVRRKI 255
G + +E I+K + E+ + P + Y+ S +V V G ++ ++I
Sbjct: 189 VGAVSVESIKKHV-EVVVEP---------------RKETYSLSCQVYVFVG--ERALQRI 230
Query: 256 EELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKALRHMDRTGVDVILAEG 315
+E + + ++ G+ V + + DE +G + EE + NLF A+R + D+I+ EG
Sbjct: 231 KEFVDEAEKRGRVVVI--AREKITDETIVIGKSAEEYSANLFSAVREAESRRPDIIVIEG 288
Query: 316 VEEKGLGLAVMNRLRKASGYRIIKV 340
VE + A+M+RLR+ +G R+ +V
Sbjct: 289 VENE----AIMDRLRRLAGERVFRV 309
>pir||E70191 conserved hypothetical protein BB0734 - Lyme disease spirochete
>gi|2688669|gb|AAC67081.1| (AE001173) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 337
Score = 201 bits (507), Expect = 7e-51
Identities = 129/336 (38%), Positives = 204/336 (60%), Gaps = 12/336 (3%)
Query: 9 ERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHI 68
E I +I+ AA I+ G+LV FPTETVYG+GANA +E+AVK IF K RP +NPLI+H+
Sbjct: 5 EIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHV 64
Query: 69 ASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIA 128
+ ++++ L++ IP+ A ML K+F PGPLT VL KS + R ++G LDTVA+R+PA++ A
Sbjct: 65 DTVKKIKELSEYIPKSALMLIKKFSPGPLTYVLKKSIKISRFVSGNLDTVAIRIPANKTA 124
Query: 129 LKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETR---IGVESTVI- 184
L LI+ S+ PI APSANIS +PS T+ ++ G + II E + IG+ESTV+
Sbjct: 125 LSLIKASKVPIVAPSANISKRPSSTNFEMALKELNGLVRGIIKPEENKDFNIGIESTVVG 184
Query: 185 -DLTEWPPVLLRPGGLPLEEIEKVI-GEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVI 242
DL + ++LRPG + + IE + G+ ++ A ++ K+PG HY P V
Sbjct: 185 FDLKD-NVLILRPGAITKKMIENELQGKYTVNYA--ETKMELEKSPGNIIEHYKPKIPVY 241
Query: 243 VVEGPRDKVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKALRH 302
+ + +D +RR + + + + + ++ + +T+EE A+NL+K L +
Sbjct: 242 LFKS-QDNIRRYLNKDTKILITKATLKSYLFNFFWNKKNITVF-NTLEEYAQNLYKELVN 299
Query: 303 MDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRII 338
+ IL+E ++++ LG ++ NR++KAS R I
Sbjct: 300 SE-NNYKQILSEFLKDEELGHSINNRIKKASSNRFI 334
>pir||H71646 hypothetical protein RP848 - Rickettsia prowazekii
>gi|3861373|emb|CAA15272.1| (AJ235273) unknown
[Rickettsia prowazekii]
Length = 313
Score = 182 bits (457), Expect = 5e-45
Identities = 124/328 (37%), Positives = 181/328 (54%), Gaps = 28/328 (8%)
Query: 16 IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
I A FI+ GK+V FPTETVYG+GA+A + A +IF+ K RPA NPLI+H+ S Q +
Sbjct: 2 INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVTSIVQAK 61
Query: 76 VLAKEIPEEAEMLAKRFWPGPLTLVLPKSE---VVPRVITGGLDTVAVRMPAHEIALKLI 132
+ E + AE +A +FWPGPL++V+P + + P V T GL+T+A+R+P++ IAL LI
Sbjct: 62 AIG-EFNKLAEKIASKFWPGPLSIVVPLKDNVNIAPSV-TAGLNTIALRIPSYPIALALI 119
Query: 133 ELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGE---TRIGVESTVIDLTEW 189
S PIAAPSAN S SPT+A HV + F E I E G+EST+ID T
Sbjct: 120 RQSVVPIAAPSANPSNYISPTNAEHVTKHFKDNREIFILAPEIYQCEYGLESTIIDTTTV 179
Query: 190 PPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVIVVEGPRD 249
P +LR G + E +E+++G ++I A S+ KAPGM +HY+P+ V
Sbjct: 180 IPTILREGFITSEILEELLG-VKILKASEINSI--VKAPGMLKKHYSPNVHV-------- 228
Query: 250 KVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKALRHMD----R 305
++ + KE G G A + G+ + E A NL+ LR +D
Sbjct: 229 ----RLNAINLNDKEIGLNFGNSNLTGKFALNLSTEGNII-EAAANLYSYLRILDDYAVS 283
Query: 306 TGVDVILAEGVEEKGLGLAVMNRLRKAS 333
++ I V +G A+ +RL++A+
Sbjct: 284 NDINCIAVAPVPLTNIGAAINDRLKRAA 311
>gi|11497366 conserved hypothetical protein [Borrelia burgdorferi]
>gi|11497448|ref|NP_051542.1| conserved hypothetical
protein [Borrelia burgdorferi]
>gi|6382387|gb|AAF07698.1|AE001582_6 (AE001582)
conserved hypothetical protein [Borrelia burgdorferi]
>gi|6435847|gb|AAF08548.1|AE001583_3 (AE001583)
conserved hypothetical protein [Borrelia burgdorferi]
Length = 330
Score = 162 bits (407), Expect = 4e-39
Identities = 110/329 (33%), Positives = 179/329 (53%), Gaps = 16/329 (4%)
Query: 11 IEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIAS 70
I E + +IA I+ G+++ FPT+TVY +GAN DE AV+ I K + + PL++++ +
Sbjct: 7 ISEDQFKIALKLIKMGEIIVFPTDTVYAIGANIYDEYAVRMINLVKKKSINEPLMLYVDT 66
Query: 71 FEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALK 130
E+++ L+ +P+ A++L ++F PGPLT VL KS +P+ I LDTVA+R+P ++ AL
Sbjct: 67 IEKIKELSSHVPKSAKILMEKFSPGPLTYVLKKSIKIPKFINNNLDTVAIRIPKNKTALN 126
Query: 131 LIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECII---DGGETRIGVESTVIDL- 186
LI + P+ SAN+S +PS TS ++ G + II ++ IG+EST+I+
Sbjct: 127 LIRKLKNPLVVSSANLSKRPSSTSFSMALKELNGLVGGIIMPKKNKDSNIGIESTIIEFD 186
Query: 187 TEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVIVVEG 246
++ ++LRPG + + IEKV+G + Y K YR P +
Sbjct: 187 SKDNVIILRPGAITKKMIEKVLGS--RYKVNYAKETKIDLKKMFSYRLRIPVHTFKRGDN 244
Query: 247 PRDKVRRKIEELIAK--FKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKALRHMD 304
R ++ + LI + FK S +D + L D++ E A NL+K L + +
Sbjct: 245 IRKYLKTNTKVLITRDTFK------FYFFSFLWDKKNII-LFDSLIEYAENLYKELVNAE 297
Query: 305 RTGVDVILAEGVEEKGLGLAVMNRLRKAS 333
D ++ E VE + LG A+ NR+ KAS
Sbjct: 298 EK-YDQVIVEIVENEELGYAINNRIVKAS 325
>sp|Q10618|YD01_MYCTU HYPOTHETICAL 22.6 KDA PROTEIN RV1301 >gi|7476716|pir||A70774
hypothetical protein Rv1301 - Mycobacterium tuberculosis
(strain H37RV) >gi|1322425|emb|CAA97734.1| (Z73419)
hypothetical protein Rv1301 [Mycobacterium tuberculosis]
Length = 217
Score = 134 bits (334), Expect = 1e-30
Identities = 72/191 (37%), Positives = 108/191 (55%), Gaps = 1/191 (0%)
Query: 19 AAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLA 78
A G I+ G+LV PT+TVYG+GA+A D +AV + AKGR D P+ + + S+ +E L
Sbjct: 20 AVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWHTIEGLV 79
Query: 79 KEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERP 138
+P+ A L + FWPG L+LV+ ++ + + TV +RMP H +A++L+ P
Sbjct: 80 YSMPDGARELIRAFWPGALSLVVVQAPSLQWDLGDAHGTVMLRMPLHPVAIELLR-EVGP 138
Query: 139 IAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLRPGG 198
+A SANISG P P A + +D G + ST++DLT P +LRPG
Sbjct: 139 MAVSSANISGHPPPVDAEQARSQLGDHVAVYLDAGPSEQQAGSTIVDLTGATPRVLRPGP 198
Query: 199 LPLEEIEKVIG 209
+ E I +V+G
Sbjct: 199 VSTERIAEVLG 209
>gb|AAG20422.1| (AE005114) Vng2312c [Halobacterium sp. NRC-1]
Length = 198
Score = 132 bits (329), Expect = 5e-30
Identities = 76/183 (41%), Positives = 109/183 (59%), Gaps = 8/183 (4%)
Query: 19 AAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLA 78
AA +REG LV FPTETVYGL A+ALD +A++ FEAK RP + PL +F +E
Sbjct: 10 AAEALREGGLVVFPTETVYGLAADALDPDAIEAAFEAKRRPREKPLSF---AFPDVEAAV 66
Query: 79 KEIP--EEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSE 136
+ + E F PGP+T+V K + VP V+TGG D V VR+P E+A+ L+E
Sbjct: 67 EHVAVGETERAFMAEFLPGPVTVVCEKRDSVPDVLTGGRDRVGVRVPDSEVAVALLE-RV 125
Query: 137 RPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLRP 196
P+ A SAN+SG+PS T+ + F +++ ++D GE+ G STV+D+ +LR
Sbjct: 126 APLTATSANVSGEPSVTNPAALDPAFRARVDAVVDAGESPGGTGSTVVDVARGE--ILRA 183
Query: 197 GGL 199
G +
Sbjct: 184 GAV 186
>pir||C69093 conserved hypothetical protein MTH1692 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622823|gb|AAB86164.1| (AE000927) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 208
Score = 131 bits (327), Expect = 9e-30
Identities = 71/186 (38%), Positives = 111/186 (59%), Gaps = 4/186 (2%)
Query: 19 AAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLA 78
A + G +V +PT+T+YGLG NALDE+AV+R+F KGR P+ I ++ +++ +
Sbjct: 19 AISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFS 78
Query: 79 KEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERP 138
+ + E++ +R PGP T+VL ++E++P VITGG V +R+P EI ++ + P
Sbjct: 79 RPSGDAMELM-ERILPGPYTVVLERNELIPDVITGGSSRVGIRVPDDEICRRI--AARFP 135
Query: 139 IAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLRPGG 198
+ A SANISGKP + D ++ ++D G+ STVIDLT PP +LR G
Sbjct: 136 VTATSANISGKPPSPRLEEIVRDL-DAVDLVLDAGDCLDMEPSTVIDLTVNPPRVLRRGK 194
Query: 199 LPLEEI 204
PL+ +
Sbjct: 195 GPLDPV 200
>emb|CAB94533.1| (AL359152) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
Length = 215
Score = 130 bits (324), Expect = 2e-29
Identities = 76/198 (38%), Positives = 108/198 (54%), Gaps = 1/198 (0%)
Query: 16 IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
+R AA +R G+LV PT+TVYG+GA+A AV + EAKGR + P + I S L
Sbjct: 17 LREAASAVRRGELVVLPTDTVYGIGADAFAAEAVGDLLEAKGRGRNMPSPVLIGSPNTLH 76
Query: 76 VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELS 135
L + E A L FWPG LTLV + + TVAVRMP H +A++L+
Sbjct: 77 GLVTDFSEMAWELVDAFWPGALTLVAKHQPSLQWDLGETRGTVAVRMPLHPVAIELL-TE 135
Query: 136 ERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLR 195
P+A SAN++G P+P + + +DGG T V S+++D+T PVLLR
Sbjct: 136 VGPMAVSSANLTGHPAPEDCDAAQQMLGDSVSVYLDGGPTPGIVPSSIVDVTREVPVLLR 195
Query: 196 PGGLPLEEIEKVIGEIRI 213
G L EE+ KV+ ++ +
Sbjct: 196 AGALSAEELRKVVPDLEV 213
>sp|P45831|YD01_MYCLE HYPOTHETICAL 22.7 KDA PROTEIN IN RFE-HEMK INTERGENIC REGION
>gi|7476070|pir||T09983 hypothetical protein sua5 -
Mycobacterium leprae >gi|699330|gb|AAA63091.1| (U15186)
yeast SUA5 protein [Mycobacterium leprae]
Length = 220
Score = 121 bits (300), Expect = 1e-26
Identities = 67/196 (34%), Positives = 107/196 (54%), Gaps = 1/196 (0%)
Query: 16 IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
I A ++ G+LV PT+TVYG+GA+A D AV + AKGR D P+ + + S+ +E
Sbjct: 20 IASAVAALKGGRLVVMPTDTVYGIGADAFDRAAVAALLSAKGRGRDMPVGVLVGSWHTIE 79
Query: 76 VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELS 135
L +P+ A L + FWPG L+LV+ + + + TV +RMP H +A++L+
Sbjct: 80 GLVYTMPDGARELIRAFWPGALSLVVVHAPSLNWDLGDAHGTVMLRMPLHSVAIELL-CE 138
Query: 136 ERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLR 195
P+A SAN+SG+P+ + +D G + ST++DLTE P +LR
Sbjct: 139 VGPMAVSSANVSGQPAAVDVDGARGQLGELVGVYLDAGPSAQQAASTIVDLTEATPRILR 198
Query: 196 PGGLPLEEIEKVIGEI 211
G + + I +V+G +
Sbjct: 199 AGPVSVARIAEVLGVV 214
>sp|Q60369|Y062_METJA HYPOTHETICAL PROTEIN MJ0062 >gi|2128103|pir||F64307 conserved
hypothetical protein MJ0062 - Methanococcus jannaschii
>gi|1498824|gb|AAB98044.1| (U67464) hypothetical protein
[Methanococcus jannaschii]
Length = 207
Score = 111 bits (274), Expect = 2e-23
Identities = 65/206 (31%), Positives = 118/206 (56%), Gaps = 9/206 (4%)
Query: 4 IINVRERIEEWKIRIAAGFIRE---GKLVAFPTETVYGLGANALDENAVKRIFEAKGRPA 60
II + E EE + ++ +E GK+V T+T+YG+ ANAL+E AV++++ K R
Sbjct: 7 IIKIYELNEEERKKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYNIKRREF 66
Query: 61 DNPLIIHIASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAV 120
+ PL I + ++E A + + A+ + +F PGPLT++L K +P ++ D + +
Sbjct: 67 NKPLSICVRDKNEIEKYAY-VNDLAKKIIDKFLPGPLTIILKKKPGIPDIVAK--DYIGI 123
Query: 121 RMPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVE 180
R+P I + ELS P+ SANISGK SPT+ + ++ K++ +ID G+ +
Sbjct: 124 RIPDEPI---IRELSIVPLTTTSANISGKESPTTVDEIDKEVLKKVDYVIDIGKCKYSKP 180
Query: 181 STVIDLTEWPPVLLRPGGLPLEEIEK 206
ST+I + + + +R G +P++++ +
Sbjct: 181 STIIKIEDDKIISIREGVIPIQKLAR 206
>pir||G81704 conserved hypothetical protein TC0414 [imported] - Chlamydia
muridarum (strain Nigg) >gi|7190456|gb|AAF39270.1|
(AE002308) conserved hypothetical protein [Chlamydia
muridarum]
Length = 280
Score = 108 bits (266), Expect = 1e-22
Identities = 70/187 (37%), Positives = 108/187 (57%), Gaps = 10/187 (5%)
Query: 23 IREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLA-KEI 81
IR G++ AFPT+TVYGLG + L A K++F K R L ++++S E+LE +A + +
Sbjct: 9 IRSGQVFAFPTDTVYGLGVSFLIPEADKQLFALKRRNPQKALSVYVSSLEELEYVAQRRL 68
Query: 82 PEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERPIAA 141
E + +A++F PGPLTL+ + PR T+ R+ H I ++I+ P+ A
Sbjct: 69 GEASIKIAQKFLPGPLTLITKHNN--PRF---SQKTLGFRIVEHPIVKQIIQ-EVGPLLA 122
Query: 142 PSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLRPGGLPL 201
SAN+SG PS S+ V +DF K + ++ G IG+ESTV+D E ++ R G +
Sbjct: 123 TSANVSGFPSAVSSDEVKQDFPEK-DILVISGTCSIGLESTVVDAEE--RIIYREGVVSA 179
Query: 202 EEIEKVI 208
EIE V+
Sbjct: 180 AEIEDVL 186
>pir||C83644 conserved hypothetical protein PA0022 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9945841|gb|AAG03412.1|AE004441_13 (AE004441)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 185
Score = 107 bits (265), Expect = 2e-22
Identities = 56/162 (34%), Positives = 97/162 (59%), Gaps = 1/162 (0%)
Query: 11 IEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIAS 70
I ++ + AA +REG ++A+PTE V+GLG + +E+AV R+ K RP + LI+ A+
Sbjct: 2 ISSFRAQCAARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAAN 61
Query: 71 FEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALK 130
QL+ L +++P+ WPGP T ++P E +P +TG D+VAVR+ H + +
Sbjct: 62 IHQLDFLLEDLPDVWLDRLAGTWPGPNTWLVPHQERLPEWVTGVHDSVAVRVTDHPLVQE 121
Query: 131 LIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDG 172
L L+ P+ + SAN +G+P+ + V + F+ +++ I+ G
Sbjct: 122 LCHLT-GPLISTSANPAGRPAARTRLRVEQYFHDELDAILGG 162
>pir||B71552 probable sua5-related protein - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3328537|gb|AAC67728.1| (AE001287)
SuA5 Superfamily-related Protein [Chlamydia trachomatis]
Length = 281
Score = 103 bits (255), Expect = 3e-21
Identities = 68/188 (36%), Positives = 109/188 (57%), Gaps = 10/188 (5%)
Query: 23 IREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLAKE-I 81
I+ G++ AFPT+TVYGLG + +A +R+F K R + L ++++S E+LE +A++ +
Sbjct: 10 IKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKHRSSQKALSVYVSSLEELEAVAQQSL 69
Query: 82 PEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERPIAA 141
+ + ++F PGPLTL+ + PR T+ R+ H I ++I+ P A
Sbjct: 70 GASSRKIIQKFLPGPLTLITKHNN--PRF---PQKTLGFRIVNHPIVQQIIQ-KVGPFLA 123
Query: 142 PSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLRPGGLPL 201
SAN+SG PS SA V +DF + + ++ GE IG+ESTVID E ++ R + +
Sbjct: 124 TSANLSGFPSAVSADEVKQDF-PEEDIVMISGECSIGLESTVIDPEE--RIVYRESAISI 180
Query: 202 EEIEKVIG 209
EIE V+G
Sbjct: 181 AEIETVLG 188
>pir||E82370 Sua5/YciO/YrdC family protein VC0054 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654448|gb|AAF93232.1|
(AE004096) Sua5/YciO/YrdC family protein [Vibrio
cholerae]
Length = 188
Score = 98.7 bits (242), Expect = 9e-20
Identities = 54/156 (34%), Positives = 85/156 (53%), Gaps = 2/156 (1%)
Query: 19 AAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLA 78
A +R+G ++A+PTE V+GLG + ++ A+ R+ K RP + +I+ AS+ QL
Sbjct: 10 AVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLRPYV 69
Query: 79 KEIPEEAEMLAKRF--WPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSE 136
E AE L + WP PLT V+P S P + G DTVAVR+ H + KL
Sbjct: 70 DETQLTAEQLTQVLASWPAPLTWVMPASGDTPSWVRGQFDTVAVRVSDHPVVQKLCLAFG 129
Query: 137 RPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDG 172
+P+ + SAN+SG+P+ + V +I +++G
Sbjct: 130 KPLTSTSANLSGQPACVTQQEVMVQLGNQIAVVVEG 165
>sp|P45748|YRDC_ECOLI 20.8 KDA PROTEIN IN AROE-SMG INTERGENIC REGION
>gi|7466539|pir||E65120 hypothetical protein in aroE-smg
intergenic region - Escherichia coli (strain K-12)
>gi|2367210|gb|AAC76307.1| (AE000406) orf, hypothetical
protein [Escherichia coli K12]
Length = 190
Score = 97.9 bits (240), Expect = 1e-19
Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 16 IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
I A + E +++A+PTE V+G+G + E AV R+ E K RP D LI+ A++EQL+
Sbjct: 10 IAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLK 69
Query: 76 VLAKEI---PEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLI 132
+ + E + R WPGP+T V P PR +TG D++AVR+ H + + L
Sbjct: 70 PYIDDTMLTDVQRETIFSR-WPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALC 128
Query: 133 ELSERPIAAPSANISGKPSPTSAHHVAEDF 162
+ +P+ + SAN+SG P + V F
Sbjct: 129 QAYGKPLVSTSANLSGLPPCRTVDEVRAQF 158
>gb|AAA58079.1| (U18997) ORF_f176 [Escherichia coli]
Length = 176
Score = 95.6 bits (234), Expect = 8e-19
Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 4/144 (2%)
Query: 22 FIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLAKEI 81
F + +++A+PTE V+G+G + E AV R+ E K RP D LI+ A++EQL+ +
Sbjct: 2 FSMKERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDT 61
Query: 82 ---PEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERP 138
+ E + R WPGP+T V P PR +TG D++AVR+ H + + L + +P
Sbjct: 62 MLTDVQRETIFSR-WPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKP 120
Query: 139 IAAPSANISGKPSPTSAHHVAEDF 162
+ + SAN+SG P + V F
Sbjct: 121 LVSTSANLSGLPPCRTVDEVRAQF 144
>pir||E70357 conserved hypothetical protein aq_651 - Aquifex aeolicus
>gi|2983259|gb|AAC06854.1| (AE000700) hypothetical
protein [Aquifex aeolicus]
Length = 198
Score = 95.6 bits (234), Expect = 8e-19
Identities = 64/193 (33%), Positives = 105/193 (54%), Gaps = 8/193 (4%)
Query: 16 IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
++ A +++G ++ PT+T+YG+ A+A +E AVKR+++ + RP+ P ++ + LE
Sbjct: 10 LKEAVEILKKGGIIVAPTDTLYGILADATNEEAVKRLYKIR-RPSGKPFLVLLPDESWLE 68
Query: 76 VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELS 135
L ++ EE + L K LTLV K+ ++ G T+AVR+P L+
Sbjct: 69 KLCLDVKEEHKKLLK---VEGLTLVFRKTCDKLDYVSKG--TLAVRLPQKGFIRDLLSEL 123
Query: 136 ERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLR 195
++P+ APS N GK S F K++ ID G + G ST++DLTE + LR
Sbjct: 124 KKPVVAPSVNPEGKKPAESVEEAYNYFGNKVDLYIDAGVIK-GEPSTILDLTEGVKI-LR 181
Query: 196 PGGLPLEEIEKVI 208
G + EEIEK++
Sbjct: 182 EGKVKKEEIEKIL 194
>sp|P44807|YRDC_HAEIN HYPOTHETICAL PROTEIN HI0656 >gi|1074469|pir||B64156 hypothetical
protein HI0656 - Haemophilus influenzae (strain Rd KW20)
>gi|1573655|gb|AAC22315.1| (U32748) conserved
hypothetical protein [Haemophilus influenzae Rd]
Length = 183
Score = 81.9 bits (199), Expect = 1e-14
Identities = 46/145 (31%), Positives = 78/145 (53%), Gaps = 2/145 (1%)
Query: 20 AGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE--VL 77
A +R+ ++VA+PTE V+GLG N E+AVK++ + K RP + LI+ S + V
Sbjct: 7 ADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVD 66
Query: 78 AKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSER 137
++I +E + + P T ++P P +TG D++A+R+ H L EL+
Sbjct: 67 FEQINDEQLSRLQGKYERPTTWIVPAKSTTPHFLTGKFDSIAIRLCDHPSVKALCELTGF 126
Query: 138 PIAAPSANISGKPSPTSAHHVAEDF 162
+ + SAN++G+P +A V F
Sbjct: 127 ALTSTSANLTGEPPCRTADEVRLQF 151
>sp|P57561|Y494_BUCAI HYPOTHETICAL PROTEIN BU494 >gi|10039153|dbj|BAB13187.1| (AP001119)
hypothetical protein [Buchnera sp. APS]
Length = 175
Score = 80.8 bits (196), Expect = 2e-14
Identities = 48/147 (32%), Positives = 80/147 (53%), Gaps = 3/147 (2%)
Query: 28 LVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLAKEIPEEAEM 87
++A+PTE+++GLG + + AVK++ K R + LI+ + F+Q+++ E +
Sbjct: 7 VIAYPTESMFGLGCDPNSKKAVKKLLNLKNRSIEKGLILVASDFDQIKMYVNENILSNKQ 66
Query: 88 LAKRF--WPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERPIAAPSAN 145
K F WPGP T +LP P +TG +TVAVR+ AH +KL + + + SAN
Sbjct: 67 KKKIFFHWPGPFTFLLPAKPNTPYWLTGKFNTVAVRVSAHFEIIKLCNAFGQAVVSTSAN 126
Query: 146 ISGKPSPTSAHHVAEDFYGKIECIIDG 172
IS ++ V + F GK +++G
Sbjct: 127 ISNMTPCFTSEEVFKCF-GKDFPLLNG 152
>pir||D81000 conserved hypothetical protein NMB2150 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7227408|gb|AAF42458.1| (AE002563) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 189
Score = 80.4 bits (195), Expect = 3e-14
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 2/165 (1%)
Query: 22 FIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLAKEI 81
++++G LVA+PTE+ YGLG A+ ++ K RP +I+ FEQL+ L +
Sbjct: 18 YLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMP 77
Query: 82 PEEAEMLAKRFWPGPLTLVL-PKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERPIA 140
E + + ++ WP P T +L KS V+P + +AVR+PAH A +L + + P+
Sbjct: 78 SENLQDMLRKEWPAPKTFLLSAKSCVLPELRGKQRSKLAVRVPAHVGARRLCQALQTPLV 137
Query: 141 APSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVID 185
+ S N +GK + + V F G+ I+ G R S +ID
Sbjct: 138 STSCNRAGKRACRTEREVRRQF-GRDVWIVGGRIGRQKSPSQIID 181
>pir||A82018 hypothetical protein NMA0237 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7378999|emb|CAB83545.1|
(AL162752) hypothetical protein NMA0237 [Neisseria
meningitidis Z2491]
Length = 200
Score = 80.4 bits (195), Expect = 3e-14
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 2/165 (1%)
Query: 22 FIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLAKEI 81
++++G LVA+PTE+ YGLG A+ ++ K RP +I+ FEQL+ L +
Sbjct: 29 YLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMP 88
Query: 82 PEEAEMLAKRFWPGPLTLVL-PKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERPIA 140
E + + ++ WP P T +L KS V+P + +AVR+PAH A +L + + P+
Sbjct: 89 SENLQDMLRKEWPAPKTFLLSAKSCVLPELRGKQRSKLAVRVPAHVGARRLCQALQTPLV 148
Query: 141 APSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVID 185
+ S N +GK + + V F G+ I+ G R S +ID
Sbjct: 149 STSCNRAGKRACRTEREVRRQF-GRDVWIVGGRIGRQKSPSQIID 192
>dbj|BAB09832.1| (AB005246) gene_id:MUP24.1~pir||T31603~similar to unknown protein
[Arabidopsis thaliana]
Length = 239
Score = 79.6 bits (193), Expect = 5e-14
Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 10/181 (5%)
Query: 23 IREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLA--KE 80
I+ K++A PT+T+YG +A AV RI+E KGR +PL I + ++ +A
Sbjct: 34 IKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKRVATTSH 93
Query: 81 IPEEAEMLAKRFWPGPLTLVLPKSE--VVPRVITGGLDTVAVRMPAHEIALKLIELSERP 138
+P L PGP+TLVL + E ++ + + G+ T+ VR+P E ++ S
Sbjct: 94 LPHG---LLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGSGSV 150
Query: 139 IAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIG-VESTVIDLTEWPPV-LLRP 196
+A SAN+SG S E+ + + DGG G ST++DLT+ ++RP
Sbjct: 151 LALTSANLSGDRSSVCVKDF-ENLWQHCAYVYDGGLLPSGRAGSTIVDLTKVGKYKIIRP 209
Query: 197 G 197
G
Sbjct: 210 G 210
>pir||S74580 hypothetical protein sll0216 - Synechocystis sp. (strain PCC 6803)
>gi|1651805|dbj|BAA16732.1| (D90900) hypothetical
protein [Synechocystis sp.]
Length = 210
Score = 79.2 bits (192), Expect = 6e-14
Identities = 50/178 (28%), Positives = 94/178 (52%), Gaps = 4/178 (2%)
Query: 23 IREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLAKEIP 82
+R+G ++ +PT+TVY +G + D+NAV+R+ + K + PL +S + A +
Sbjct: 24 LRQGAIMLYPTDTVYAIGCDLNDKNAVQRVRQLKQLSNNKPLTFLCSSLSNIAEYA-VVA 82
Query: 83 EEAEMLAKRFWPGPLTLVLPKSEVVPR-VITGGLDTVAVRMPAHEIALKLIELSERPIAA 141
++A L ++ PGP T +LP ++ VP+ V+ T +R+P I ++++ PI +
Sbjct: 83 DDAYRLMRKLIPGPYTFLLPATKQVPKLVVEPKRKTTGIRVPDRPICQEILQSLGNPIIS 142
Query: 142 PSANISGKPSPTSAHHV-AEDFYGKIECIIDGGETRIGVE-STVIDLTEWPPVLLRPG 197
SA++ + A D + K+ II + G + S++ID T+ P ++R G
Sbjct: 143 TSAHLPDQDEFVMAEKAKLFDLFDKLVDIIIDDDREPGYQTSSIIDFTDKEPKVVREG 200
>pir||S75670 hypothetical protein sll1866 - Synechocystis sp. (strain PCC 6803)
>gi|1653316|dbj|BAA18231.1| (D90912) hypothetical
protein [Synechocystis sp.]
Length = 199
Score = 78.0 bits (189), Expect = 1e-13
Identities = 56/140 (40%), Positives = 79/140 (56%), Gaps = 8/140 (5%)
Query: 27 KLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQ-LEVLAKEIPEEA 85
++V+FPT+TV L EN+ I+E K R A PLI+ A+ EQ L LA E+
Sbjct: 17 RVVSFPTDTVPALAVRP--ENSAL-IYELKQREASKPLILMAATVEQILPYLAGSQREKQ 73
Query: 86 --EMLAKRFWPGPLTLVLPKSEVVPRVITGGLD-TVAVRMPAHEIALKLIELSERPIAAP 142
+ + +WPG LTLVLP SE +P I D T+ VR+P I+L+++ L P+A
Sbjct: 74 LWQAVMAEYWPGALTLVLPCSEKLPPEINPRQDQTIGVRIPRQAISLEIL-LQTGPLATT 132
Query: 143 SANISGKPSPTSAHHVAEDF 162
SAN+SG+P +AE F
Sbjct: 133 SANLSGQPPLEKLADIAETF 152
>pir||T31603 hypothetical protein Y48C3A.u - Caenorhabditis elegans
>gi|5832914|emb|CAB55118.1| (AL117203) predicted using
Genefinder~contains similarity to Pfam domain: PF01300
(SUA5/yciO/yrdC family), Score=93.4, E-value=1.5e-24,
N=1~cDNA EST yk139a7.3 comes from this gene~cDNA EST
yk139a7.5 comes from this gene [Caenorhabditis elegans]
Length = 244
Score = 78.0 bits (189), Expect = 1e-13
Identities = 67/219 (30%), Positives = 109/219 (49%), Gaps = 12/219 (5%)
Query: 9 ERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHI 68
+ IEE F+R G +VA PT+T+YG+ + R++ K RP + PL I +
Sbjct: 13 DNIEEAIDAAVCVFLRGG-IVALPTDTLYGISTLLQYSD---RLYALKQRPYEKPLGIFL 68
Query: 69 ASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIA 128
S +++++++ + LA PGP+TL+ + +P G+ VA R+P I
Sbjct: 69 PSPTAMKLVSRQTISDE--LANCLLPGPVTLMFERLPCLPAEFNPGVVNVACRVPDCPIV 126
Query: 129 LKLIELSERPIAAPSANISGKP-SPTSAHHVAEDFYGKIECIIDGGE-TRIGVESTVIDL 186
+ + +P+A SAN+SG +PTS H D + I+ I+D G G ST++DL
Sbjct: 127 STICKKLGQPLAQTSANVSGSSLNPTSIDHF-RDLHPNIDLILDAGSIISSGEGSTIVDL 185
Query: 187 T-EWPPVLLRPGGLPLEEIEKV--IGEIRIHPAVYGKSV 222
T E ++R G E ++K+ G +I P SV
Sbjct: 186 TVESGFRIVRSGCAEKETMQKLKSFGLTKIQPPDVTNSV 224
>pir||H75343 SUA5-related protein - Deinococcus radiodurans (strain R1)
>gi|6459642|gb|AAF11415.1|AE002026_3 (AE002026)
SUA5-related protein [Deinococcus radiodurans]
Length = 230
Score = 76.1 bits (184), Expect = 6e-13
Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 11/145 (7%)
Query: 16 IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
+R AA + G +VA+PTETV+GL A A ++ KGR A+ PL +
Sbjct: 23 LRAAADVLDRGGVVAYPTETVWGLAARPA---AAAELYRRKGREANKPLQLSCPG--AAA 77
Query: 76 VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVA------VRMPAHEIAL 129
LA +P A + WPGPLT+V P G + VA +R+PAH +AL
Sbjct: 78 ALALAVPSPALLALSACWPGPLTVVTPGRPERLEDWGAGAEAVAPDGWLGLRVPAHPVAL 137
Query: 130 KLIELSERPIAAPSANISGKPSPTS 154
L+ + P+A S N SG+ + T+
Sbjct: 138 ALLSAAGGPLATTSLNPSGQAAATT 162
>pir||A82746 conserved hypothetical protein XF0919 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9105840|gb|AAF83729.1|AE003931_6 (AE003931)
conserved hypothetical protein [Xylella fastidiosa]
Length = 187
Score = 75.3 bits (182), Expect = 9e-13
Identities = 48/156 (30%), Positives = 74/156 (46%), Gaps = 10/156 (6%)
Query: 23 IREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFE------QLEV 76
+++G ++A+PTE V+GLG + E AV + K R + LI+ A L+
Sbjct: 14 LQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQDWLDLDT 73
Query: 77 LAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSE 136
L+ E E + WPGP T VLP S P ITG + +AVR+ AH + L
Sbjct: 74 LSPERLHEVQTS----WPGPHTWVLPASTRAPHWITGHHNGLAVRISAHPLVSALCRAWN 129
Query: 137 RPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDG 172
+ + SAN++G+P + + I+DG
Sbjct: 130 MALISTSANVAGQPPARRREDLDPSLLPHLAGIVDG 165
>sp|P45103|YCIO_HAEIN HYPOTHETICAL PROTEIN HI1198 >gi|1074679|pir||I64168 probable
translation factor HI1198 - Haemophilus influenzae
(strain Rd KW20) >gi|1574127|gb|AAC22852.1| (U32799)
conserved hypothetical protein [Haemophilus influenzae
Rd]
Length = 207
Score = 74.9 bits (181), Expect = 1e-12
Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
Query: 16 IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
I A +++G ++ +PT++ Y LG D++A+ RI + P + + + +L
Sbjct: 17 INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76
Query: 76 VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVP-RVITGGLDTVAVRMPAHEIALKLIEL 134
A+ + A L K PG T +L ++ +P R++T T+ +R+P ++IAL L+
Sbjct: 77 TYAR-VNNTAYRLIKNNTPGRYTFILTATKELPRRLMTSKRKTIGLRVPDNKIALDLLSA 135
Query: 135 SERPIAAPSANISGKPSPTSA--HHVAEDFYGKIECIIDGGETRIGVE-STVIDLTEWPP 191
PI + S + + T + + + +++ II GG +G E +TV+DLTE P
Sbjct: 136 LGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGG--YLGQEPTTVVDLTEESP 193
Query: 192 VLLRPG 197
V+LR G
Sbjct: 194 VILREG 199
>pir||C72098 Sua5/YciO/YrdC family protein CP0489 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
>gi|4376543|gb|AAD18419.1| (AE001612) SuA5
Superfamily-related Protein [Chlamydophila pneumoniae
CWL029] >gi|7189407|gb|AAF38319.1| (AE002210)
Sua5/YciO/YrdC family protein [Chlamydophila pneumoniae
AR39] >gi|8978644|dbj|BAA98480.1| (AP002546) SuA5
superfamily-related protein [Chlamydophila pneumoniae
J138]
Length = 286
Score = 72.2 bits (174), Expect = 8e-12
Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 11/188 (5%)
Query: 23 IREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE-VLAKEI 81
I +GK+VA PT+TVYG + A +R++ K R +++ S E +E + +
Sbjct: 19 IHQGKIVALPTDTVYGFVLSLYASEAEERLYALKDREPSKAFALYVNSIEDIENISGYPL 78
Query: 82 PEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERPIAA 141
A+ LA+ F PG +TLV+ PR +T+A R+ H + ++++ I
Sbjct: 79 SPTAKKLAQLF-PGAITLVVKHRN--PRF---PKETLAFRIVDHSVVREIVDHCGTLIGT 132
Query: 142 PSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLRPGGLPL 201
SAN+S PS +A + DF CI DG + G+ESTV+ P + R G +
Sbjct: 133 -SANLSEFPSALTAQEIFADFADHDLCIFDGPCSH-GLESTVV--ASDPLYIYREGLISR 188
Query: 202 EEIEKVIG 209
IE + G
Sbjct: 189 SVIENIAG 196
>pir||F64874 probable translation factor yciO - Escherichia coli
>gi|1742059|dbj|BAA14801.1| (D90764) ORF_ID:o253#4;
similar to [SwissProt Accession Number P45847]
[Escherichia coli] >gi|1742075|dbj|BAA14816.1| (D90765)
ORF_ID:o253#4; similar to [SwissProt Accession Number
P45847] [Escherichia coli] >gi|1787521|gb|AAC74349.1|
(AE000224) orf, hypothetical protein [Escherichia coli
K12]
Length = 218
Score = 70.6 bits (170), Expect = 2e-11
Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 6/185 (3%)
Query: 16 IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
I A +R+G ++ +PT++ Y LG D+NA++RI + P + + +L
Sbjct: 29 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 88
Query: 76 VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVP-RVITGGLDTVAVRMPAHEIALKLIEL 134
+ + A L K PG T +L ++ VP R++ T+ +R+P++ IA L+E
Sbjct: 89 TYS-FVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEA 147
Query: 135 SERPIAAPSANISGKP-SPTSAHHVAEDFYGKIECIIDGGETRIGVE-STVIDLTEWPPV 192
P+ + S + G + + + + +++ II GG +G + +TVIDLT+ PV
Sbjct: 148 LGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG--YLGQKPTTVIDLTDDTPV 205
Query: 193 LLRPG 197
++R G
Sbjct: 206 VVREG 210
>sp|P45847|YCIO_ECOLI 23.2 KDA PROTEIN IN TRPL-BTUR INTERGENIC REGION
Length = 206
Score = 70.6 bits (170), Expect = 2e-11
Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 6/185 (3%)
Query: 16 IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
I A +R+G ++ +PT++ Y LG D+NA++RI + P + + +L
Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76
Query: 76 VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVP-RVITGGLDTVAVRMPAHEIALKLIEL 134
+ + A L K PG T +L ++ VP R++ T+ +R+P++ IA L+E
Sbjct: 77 TYS-FVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEA 135
Query: 135 SERPIAAPSANISGKP-SPTSAHHVAEDFYGKIECIIDGGETRIGVE-STVIDLTEWPPV 192
P+ + S + G + + + + +++ II GG +G + +TVIDLT+ PV
Sbjct: 136 LGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG--YLGQKPTTVIDLTDDTPV 193
Query: 193 LLRPG 197
++R G
Sbjct: 194 VVREG 198
>gb|AAB59987.1| (U18111) ORF1 [Escherichia coli]
Length = 183
Score = 69.5 bits (167), Expect = 5e-11
Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Query: 23 IREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLAKEIP 82
+R+G ++ +PT++ Y LG D+NA++RI + P + + +L + +
Sbjct: 1 VRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYS-FVD 59
Query: 83 EEAEMLAKRFWPGPLTLVLPKSEVVP-RVITGGLDTVAVRMPAHEIALKLIELSERPIAA 141
A L K PG T +L ++ VP R++ T+ +R+P++ IA L+E P+ +
Sbjct: 60 NVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLS 119
Query: 142 PSANISGKP-SPTSAHHVAEDFYGKIECIIDGGETRIGVE-STVIDLTEWPPVLLRPG 197
S + G + + + + +++ II GG +G + +TVIDLT+ PV++R G
Sbjct: 120 TSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG--YLGQKPTTVIDLTDDTPVVVREG 175
>pir||B83244 conserved hypothetical protein PA3199 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949319|gb|AAG06587.1|AE004744_2 (AE004744)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 209
Score = 69.1 bits (166), Expect = 7e-11
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 4/184 (2%)
Query: 16 IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
++ A +R+G ++ +PT++ Y LG ++ AV RI + + + +L
Sbjct: 17 VKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLSELG 76
Query: 76 VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVIT-GGLDTVAVRMPAHEIALKLIEL 134
V AK + L K PGP T +L + VPR++ T+ +R+P IA L+E
Sbjct: 77 VYAK-VDTGLFRLLKAHTPGPYTFILSATREVPRMLLHPKRRTIGLRVPNCPIARALLEE 135
Query: 135 SERPIAAPSANISGKPSP-TSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVL 193
P+ + S + G P + + + +++ I+DGG G STVI LT+ P +
Sbjct: 136 LGEPLMSVSLIMPGSGEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISLTDTDPEV 194
Query: 194 LRPG 197
+R G
Sbjct: 195 IRVG 198
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.397
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127493381
Number of Sequences: 2977
Number of extensions: 5602513
Number of successful extensions: 15367
Number of sequences better than 1.0e-10: 46
Number of HSP's better than 0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 15250
Number of HSP's gapped (non-prelim): 46
length of query: 340
length of database: 189,106,746
effective HSP length: 56
effective length of query: 284
effective length of database: 155,591,474
effective search space: 44187978616
effective search space used: 44187978616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)