BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1302 (PAB1302) DE:SUA5 RELATED PROTEIN
         (340 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75007 sua5 related protein PAB1302 - Pyrococcus abyssi (st...   675  0.0
pir||D71154 hypothetical protein PH0435 - Pyrococcus horikoshii ...   553  e-156
dbj|BAB07490.1| (AP001519) unknown conserved protein [Bacillus h...   336  3e-91
sp|P39153|YWLC_BACSU HYPOTHETICAL 37.0 KD PROTEIN IN SPOIIR-GLYC...   317  1e-85
emb|CAB57638.1| (Y18930) hypothetical protein [Sulfolobus solfat...   313  2e-84
gb|AAK40968.1| SUA5 related conserved hypothetical protein [Sulf...   313  2e-84
pir||D72469 probable Sua5 protein APE2397 - Aeropyrum pernix (st...   308  7e-83
pir||E72324 conserved hypothetical protein - Thermotoga maritima...   287  1e-76
pir||T41641 translation initiation protein SUA5-YRDC-YCIO-YWLC h...   247  1e-64
gi|6321269 translation initiation protein; Sua5p [Saccharomyces ...   240  2e-62
emb|CAC11447.1| (AL445063) sua5 related protein [Thermoplasma ac...   237  1e-61
pir||T44498 hypothetical protein [imported] - Thermomonospora fu...   236  2e-61
pir||G82243 conserved hypothetical protein VC1079 [imported] - V...   224  9e-58
gi|11498387 conserved hypothetical protein [Archaeoglobus fulgid...   210  1e-53
pir||E70191 conserved hypothetical protein BB0734 - Lyme disease...   201  7e-51
pir||H71646 hypothetical protein RP848 - Rickettsia prowazekii >...   182  5e-45
gi|11497366 conserved hypothetical protein [Borrelia burgdorferi...   162  4e-39
sp|Q10618|YD01_MYCTU HYPOTHETICAL 22.6 KDA PROTEIN RV1301 >gi|74...   134  1e-30
gb|AAG20422.1| (AE005114) Vng2312c [Halobacterium sp. NRC-1]          132  5e-30
pir||C69093 conserved hypothetical protein MTH1692 - Methanobact...   131  9e-30
emb|CAB94533.1| (AL359152) conserved hypothetical protein [Strep...   130  2e-29
sp|P45831|YD01_MYCLE HYPOTHETICAL 22.7 KDA PROTEIN IN RFE-HEMK I...   121  1e-26
sp|Q60369|Y062_METJA HYPOTHETICAL PROTEIN MJ0062 >gi|2128103|pir...   111  2e-23
pir||G81704 conserved hypothetical protein TC0414 [imported] - C...   108  1e-22
pir||C83644 conserved hypothetical protein PA0022 [imported] - P...   107  2e-22
pir||B71552 probable sua5-related protein - Chlamydia trachomati...   103  3e-21
pir||E82370 Sua5/YciO/YrdC family protein VC0054 [imported] - Vi...    99  9e-20
sp|P45748|YRDC_ECOLI 20.8 KDA PROTEIN IN AROE-SMG INTERGENIC REG...    98  1e-19
gb|AAA58079.1| (U18997) ORF_f176 [Escherichia coli]                    96  8e-19
pir||E70357 conserved hypothetical protein aq_651 - Aquifex aeol...    96  8e-19
sp|P44807|YRDC_HAEIN HYPOTHETICAL PROTEIN HI0656 >gi|1074469|pir...    82  1e-14
sp|P57561|Y494_BUCAI HYPOTHETICAL PROTEIN BU494 >gi|10039153|dbj...    81  2e-14
pir||D81000 conserved hypothetical protein NMB2150 [imported] - ...    80  3e-14
pir||A82018 hypothetical protein NMA0237 [imported] - Neisseria ...    80  3e-14
dbj|BAB09832.1| (AB005246) gene_id:MUP24.1~pir||T31603~similar t...    80  5e-14
pir||S74580 hypothetical protein sll0216 - Synechocystis sp. (st...    79  6e-14
pir||S75670 hypothetical protein sll1866 - Synechocystis sp. (st...    78  1e-13
pir||T31603 hypothetical protein Y48C3A.u - Caenorhabditis elega...    78  1e-13
pir||H75343 SUA5-related protein - Deinococcus radiodurans (stra...    76  6e-13
pir||A82746 conserved hypothetical protein XF0919 [imported] - X...    75  9e-13
sp|P45103|YCIO_HAEIN HYPOTHETICAL PROTEIN HI1198 >gi|1074679|pir...    75  1e-12
pir||C72098 Sua5/YciO/YrdC family protein CP0489 [imported] - Ch...    72  8e-12
pir||F64874 probable translation factor yciO - Escherichia coli ...    71  2e-11
sp|P45847|YCIO_ECOLI 23.2 KDA PROTEIN IN TRPL-BTUR INTERGENIC RE...    71  2e-11
gb|AAB59987.1| (U18111) ORF1 [Escherichia coli]                        69  5e-11
pir||B83244 conserved hypothetical protein PA3199 [imported] - P...    69  7e-11

>pir||F75007 sua5 related protein PAB1302 - Pyrococcus abyssi (strain Orsay)
           >gi|5459014|emb|CAB50500.1| (AJ248288) SUA5 RELATED
           PROTEIN [Pyrococcus abyssi]
           Length = 340
           
 Score =  675 bits (1722), Expect = 0.0
 Identities = 340/340 (100%), Positives = 340/340 (100%)

Query: 1   MTIIINVRERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPA 60
           MTIIINVRERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPA
Sbjct: 1   MTIIINVRERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPA 60

Query: 61  DNPLIIHIASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAV 120
           DNPLIIHIASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAV
Sbjct: 61  DNPLIIHIASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAV 120

Query: 121 RMPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVE 180
           RMPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVE
Sbjct: 121 RMPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVE 180

Query: 181 STVIDLTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAE 240
           STVIDLTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAE
Sbjct: 181 STVIDLTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAE 240

Query: 241 VIVVEGPRDKVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKAL 300
           VIVVEGPRDKVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKAL
Sbjct: 241 VIVVEGPRDKVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKAL 300

Query: 301 RHMDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRIIKV 340
           RHMDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRIIKV
Sbjct: 301 RHMDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRIIKV 340


>pir||D71154 hypothetical protein PH0435 - Pyrococcus horikoshii
           >gi|3256838|dbj|BAA29521.1| (AP000002) 340aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 340
           
 Score =  553 bits (1409), Expect = e-156
 Identities = 268/339 (79%), Positives = 311/339 (91%)

Query: 1   MTIIINVRERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPA 60
           MTIIIN+R  ++E K+RIAA  IREGKLVAFPTETVYGLGA+AL+E AV+RIFEAKGRPA
Sbjct: 1   MTIIINMRSGVDEVKLRIAAKLIREGKLVAFPTETVYGLGADALNERAVRRIFEAKGRPA 60

Query: 61  DNPLIIHIASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAV 120
           DNPLI+HIA F Q+  LA+E+PEEA++L +RFWPGPLT+VLP+ +VVP V TGGLDTVA+
Sbjct: 61  DNPLILHIAKFSQVYELAREVPEEAKVLVERFWPGPLTIVLPRKDVVPDVTTGGLDTVAI 120

Query: 121 RMPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVE 180
           RMPA+EIALKLIELS +PIAAPSANISGKPSPTSA HVA+DFYGKIECIIDGGETRIGVE
Sbjct: 121 RMPANEIALKLIELSGKPIAAPSANISGKPSPTSAEHVADDFYGKIECIIDGGETRIGVE 180

Query: 181 STVIDLTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAE 240
           STVIDLTE PPVLLRPGGLPLEEIEKVIG++RIHPAV+GK VDT K+PGMKY+HYAP+AE
Sbjct: 181 STVIDLTEHPPVLLRPGGLPLEEIEKVIGKVRIHPAVFGKKVDTPKSPGMKYKHYAPNAE 240

Query: 241 VIVVEGPRDKVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKAL 300
           VIVVEGPR+KV+ KI EL+ + KE GKKVGVIGS SY+ADE F+LG +VEE+A+NLFKAL
Sbjct: 241 VIVVEGPREKVKGKITELVKELKERGKKVGVIGSESYNADEFFFLGSSVEEVAKNLFKAL 300

Query: 301 RHMDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRIIK 339
           R+MD+ GVDV++AEGVEE+GLGLAVMNRLRKASGY+I+K
Sbjct: 301 RYMDKAGVDVVIAEGVEERGLGLAVMNRLRKASGYKIVK 339


>dbj|BAB07490.1| (AP001519) unknown conserved protein [Bacillus halodurans]
           Length = 348
           
 Score =  336 bits (852), Expect = 3e-91
 Identities = 176/331 (53%), Positives = 230/331 (69%), Gaps = 12/331 (3%)

Query: 15  KIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQL 74
           +I+ AA +I++G+LVA PTETVYGLGANAL + AV++IF AKGRP+DNPLI+HI+  EQL
Sbjct: 23  EIKEAALWIKKGELVALPTETVYGLGANALSDEAVQKIFIAKGRPSDNPLIVHISRKEQL 82

Query: 75  EVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIEL 134
             L   IP+ A +L   FWPGPLT++ PK E V  V+T GLDTVAVRMP+H +A  LIE 
Sbjct: 83  LRLVSHIPDSANLLINAFWPGPLTIIFPKGEEVSTVVTAGLDTVAVRMPSHPVAQALIEA 142

Query: 135 SERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLL 194
           +  PIAAPSAN SGKPSPTSA HV  D  GKI  ++DGG T  GVESTVID T  PP+L 
Sbjct: 143 ANVPIAAPSANRSGKPSPTSATHVLADLRGKIAGVVDGGPTAEGVESTVIDCTTTPPILY 202

Query: 195 RPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVIVVEGPRDKVRRK 254
           RPGG+  E++E V+G IRI PA+ GK  +  K+PGMKY HYAP  E+ +VE      +  
Sbjct: 203 RPGGVTREQLEAVLGPIRIDPALLGKD-EQPKSPGMKYTHYAPEGELTLVEN-----QAA 256

Query: 255 IEELIAKFKEEGKKVGVIGSG----SYDADEVFYLG--DTVEEIARNLFKALRHMDRTGV 308
           I+  + K++E+  KVG++ +      YDAD +  +G  + + E+A NL+  LR  D   V
Sbjct: 257 IQTFVDKWREKQFKVGIMATDEHKQDYDADVILSVGSRNDLAEVAHNLYHVLRQFDEQKV 316

Query: 309 DVILAEGVEEKGLGLAVMNRLRKASGYRIIK 339
           DVI+ E    +G+G+A+MNRL KA+G RII+
Sbjct: 317 DVIIGETFPREGIGVAIMNRLEKAAGGRIIQ 347


>sp|P39153|YWLC_BACSU HYPOTHETICAL 37.0 KD PROTEIN IN SPOIIR-GLYC INTERGENIC REGION
           >gi|2127244|pir||I40476 conserved hypothetical protein
           ywlC - Bacillus subtilis >gi|556881|emb|CAA86105.1|
           (Z38002) Similar to Saccharomyces cerevisiae SUA5
           protein [Bacillus subtilis] >gi|2636220|emb|CAB15712.1|
           (Z99122) alternate gene name: ipc-29d~similar to
           hypothetical proteins [Bacillus subtilis]
           >gi|1095419|prf||2108403D ipc-29d gene [Bacillus
           subtilis]
           Length = 346
           
 Score =  317 bits (804), Expect = 1e-85
 Identities = 172/332 (51%), Positives = 228/332 (67%), Gaps = 12/332 (3%)

Query: 15  KIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQL 74
           +I  AA  +RE ++VAFPTETVYGLGANA + +AVK+I+EAKGRP+DNPLI+HIA   QL
Sbjct: 20  QIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIADISQL 79

Query: 75  EVLAKEIPEEAEMLAKRFWPGPLTLVLP-KSEVVPRVITGGLDTVAVRMPAHEIALKLIE 133
           E L    PE+A+ L KRFWPG LTL+LP K + +   +T GL+TVA+RMP H +AL LI 
Sbjct: 80  EDLTGPAPEKAKTLMKRFWPGALTLILPCKPDALSPRVTAGLETVAIRMPDHPLALALIR 139

Query: 134 LSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVL 193
            S  PIAAPSAN+SGKPSPT A HVA D  G+I  I+DGG T IGVESTV+   +  PVL
Sbjct: 140 ESGLPIAAPSANLSGKPSPTKAEHVAHDLDGRIAGIVDGGPTGIGVESTVLSCADDIPVL 199

Query: 194 LRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVIVVEGPRDKVRR 253
           LRPGG+  E+IE VIG I +   +  ++ +   +PGMKY HYAP+A + + EG  +    
Sbjct: 200 LRPGGITKEQIEAVIGPIHVDKGLSDQN-EKPISPGMKYTHYAPTAPLAICEGSPE---- 254

Query: 254 KIEELIAKFKEEGKKVGVI----GSGSYDADEVFYLG--DTVEEIARNLFKALRHMDRTG 307
           +I+ LI ++++ G++VGV+     +G Y AD V   G    +E +A  L+ ALR  D   
Sbjct: 255 RIQHLIQEYQQGGRRVGVLTTEEKAGVYSADYVKSCGRRAQLETVAAGLYDALRSFDENK 314

Query: 308 VDVILAEGVEEKGLGLAVMNRLRKASGYRIIK 339
           VD I+AE   + G+GLA+MNRL KA+G R+I+
Sbjct: 315 VDFIIAESFPDTGVGLAIMNRLMKAAGGRVIR 346


>emb|CAB57638.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
           Length = 358
           
 Score =  313 bits (793), Expect = 2e-84
 Identities = 170/338 (50%), Positives = 224/338 (65%), Gaps = 24/338 (7%)

Query: 15  KIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQL 74
           KI+ AA  I+ G  V FPTETVYGLGANALD  AVK+IF AK RP DNPLI+HI++ +QL
Sbjct: 16  KIKKAANVIKAGGTVVFPTETVYGLGANALDPEAVKKIFIAKNRPMDNPLIVHISNIDQL 75

Query: 75  EVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIEL 134
             +AK+IP++   L    WPGPLT VL K+E VP+  TGGL+TVAVRMPAH +AL LI  
Sbjct: 76  YEVAKDIPKKIINLVNIVWPGPLTFVLKKTEKVPKETTGGLETVAVRMPAHPVALALINE 135

Query: 135 SERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLL 194
           S  PIAAPSAN++ KPSPT   HV +D YGK++ I+D GET  GVESTVI++T  PPVLL
Sbjct: 136 SGVPIAAPSANLATKPSPTRVEHVIDDIYGKVDVILDSGETFFGVESTVINVTVDPPVLL 195

Query: 195 RPGGLPLEEIEKVIGEIRIHPAVYGKS-VDTAKAPGMKYRHYAPSAEVIVVEGPRDKVRR 253
           RPG   +EE+E++ G++ +     G +  D A APGMKY+HYAP+  ++VVE  R  +R 
Sbjct: 196 RPGPFSVEELERLFGKVVVPEQAKGTAEFDVALAPGMKYKHYAPTKRLLVVEN-RSVLRG 254

Query: 254 KIEELIAKF-------------KEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKAL 300
            I EL  +              +  G+K+ +I  GS          + + EI+RNLF + 
Sbjct: 255 VINELQKRSCRIALLCASEVCKQFRGEKIEIIELGS---------ENNLYEISRNLFDSF 305

Query: 301 RHMDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRII 338
           R +D++ VD+ +   + EKG+GLA+MNR RKASG+  I
Sbjct: 306 RKLDKSNVDIGVIHSISEKGIGLAIMNRTRKASGFSSI 343


>gb|AAK40968.1| SUA5 related conserved hypothetical protein [Sulfolobus
           solfataricus]
           Length = 358
           
 Score =  313 bits (793), Expect = 2e-84
 Identities = 170/338 (50%), Positives = 224/338 (65%), Gaps = 24/338 (7%)

Query: 15  KIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQL 74
           KI+ AA  I+ G  V FPTETVYGLGANALD  AVK+IF AK RP DNPLI+HI++ +QL
Sbjct: 16  KIKKAANVIKAGGTVVFPTETVYGLGANALDPEAVKKIFIAKNRPMDNPLIVHISNIDQL 75

Query: 75  EVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIEL 134
             +AK+IP++   L    WPGPLT VL K+E VP+  TGGL+TVAVRMPAH +AL LI  
Sbjct: 76  YEVAKDIPKKIINLVNIVWPGPLTFVLKKTEKVPKETTGGLETVAVRMPAHPVALALINE 135

Query: 135 SERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLL 194
           S  PIAAPSAN++ KPSPT   HV +D YGK++ I+D GET  GVESTVI++T  PPVLL
Sbjct: 136 SGVPIAAPSANLATKPSPTRVEHVIDDIYGKVDVILDSGETFFGVESTVINVTVDPPVLL 195

Query: 195 RPGGLPLEEIEKVIGEIRIHPAVYGKS-VDTAKAPGMKYRHYAPSAEVIVVEGPRDKVRR 253
           RPG   +EE+E++ G++ +     G +  D A APGMKY+HYAP+  ++VVE  R  +R 
Sbjct: 196 RPGPFSVEELERLFGKVVVPEQAKGTAEFDVALAPGMKYKHYAPTKRLLVVEN-RSVLRG 254

Query: 254 KIEELIAKF-------------KEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKAL 300
            I EL  +              +  G+K+ +I  GS          + + EI+RNLF + 
Sbjct: 255 VINELQKRSCRIALLCASEVCKQFRGEKIEIIELGS---------ENNLYEISRNLFDSF 305

Query: 301 RHMDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRII 338
           R +D++ VD+ +   + EKG+GLA+MNR RKASG+  I
Sbjct: 306 RKLDKSNVDIGVIHSISEKGIGLAIMNRTRKASGFSSI 343


>pir||D72469 probable Sua5 protein APE2397 - Aeropyrum pernix (strain K1)
           >gi|5106101|dbj|BAA81412.1| (AP000064) 367aa long
           hypothetical Sua5 protein [Aeropyrum pernix]
           Length = 367
           
 Score =  308 bits (780), Expect = 7e-83
 Identities = 169/348 (48%), Positives = 225/348 (64%), Gaps = 20/348 (5%)

Query: 9   ERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHI 68
           ER +   I  AA  +R G LVAFPTETVYGLGA+AL+  A  RIFE KGRP DNPLI+H+
Sbjct: 19  ERPDRRAIERAAEVLRRGGLVAFPTETVYGLGADALNPRAAARIFEVKGRPPDNPLIVHV 78

Query: 69  ASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIA 128
           +S E    +A EIP +A  L ++ WPGPLTLVLP+  VVP ++T GL+TVAVRMPAH++A
Sbjct: 79  SSLEMARTVA-EIPGKALRLVEKLWPGPLTLVLPRKPVVPDIVTAGLETVAVRMPAHKVA 137

Query: 129 LKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTE 188
           L+L++ + RP+AAPSAN SG+PSPTS  HV  D    ++ I+D GET  GVEST+IDLT 
Sbjct: 138 LELVKAAGRPVAAPSANPSGRPSPTSGEHVIRDLDCMVDVILDAGETYFGVESTIIDLTR 197

Query: 189 WPPVLLRPGGLPLEEIEKVIGE-IRIHPAVYG-KSVDTAKAPGMKYRHYAPSAEVIVVEG 246
            PPVLLRPG +P+E +E+++ E I + P   G ++ D   APGMKYRHYAP   +I+V+ 
Sbjct: 198 TPPVLLRPGPIPVEVLERLLEEKILVPPEARGLRAADRPLAPGMKYRHYAPDTPLILVDT 257

Query: 247 PRDKVRRKIEELIAKF-KEEGKKVGVIGSG-------------SYDADEVFYLGDTVEE- 291
               V R +E  + +  +  G +V ++G                 +   +F LG   +  
Sbjct: 258 SPGAVERIVEAAVREVARARGLRVALVGPDELVDVVALLLRLRGVEPAAIFRLGPLADTT 317

Query: 292 -IARNLFKALRHMDRTG-VDVILAEGVEEKGLGLAVMNRLRKASGYRI 337
             AR LFK LR +D  G +DV +     E+G+GLAVMNRLRKA+  R+
Sbjct: 318 VAARRLFKTLRRIDELGNIDVAIVLPFPERGIGLAVMNRLRKAASRRV 365


>pir||E72324 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981386|gb|AAD35934.1|AE001752_1 (AE001752)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 335
           
 Score =  287 bits (727), Expect = 1e-76
 Identities = 162/338 (47%), Positives = 222/338 (64%), Gaps = 13/338 (3%)

Query: 1   MTIIINVRERIEEWKI-RIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRP 59
           MT ++ V     + K+ + AA  +R G+++ FPTETVYG+GA+A +E A K+IF+ K RP
Sbjct: 1   MTRVLKVDPLFPDEKVLKEAAELLRNGEVIIFPTETVYGIGADAYNEEACKKIFKLKERP 60

Query: 60  ADNPLIIHIASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVL-PKSEVVPRVITGGLDTV 118
           ADNPLI+HI SF+QLE +A+      + L K+FWPGPLT++   KSE +P V+T  L TV
Sbjct: 61  ADNPLIVHIHSFKQLEEIAEGYEPHLDFL-KKFWPGPLTVIFRKKSEKIPPVVTADLPTV 119

Query: 119 AVRMPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIG 178
           AVRMPAH +ALKLIEL   PIAAPSANISG+PS T+  HV EDF GK++ IID G+T  G
Sbjct: 120 AVRMPAHPVALKLIELFGHPIAAPSANISGRPSATNVKHVIEDFMGKVKLIIDAGDTPFG 179

Query: 179 VESTVIDLTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAV-YGKSVDTAKAPGMKYRHYAP 237
           +EST++DLT+  PVLLRPG + +E ++++  E+ +   V  G       APGMKYRHYAP
Sbjct: 180 LESTIVDLTKEKPVLLRPGPVEVERLKELFPELVVPDFVRKGNFKGRPLAPGMKYRHYAP 239

Query: 238 SAEVIVVEG--PRDKVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARN 295
              +I+VE     ++V +K  + +    EE K++       YD   V         IA+N
Sbjct: 240 LKPLILVEDLTKMEEVLKKYPDHVVICVEERKEL-------YDDRIVVGSLKNPYSIAQN 292

Query: 296 LFKALRHMDRTGVDVILAEGVEEKGLGLAVMNRLRKAS 333
           +F ALR  ++ G + I+ EG EE+G+  AVMNRLRKA+
Sbjct: 293 IFSALREAEKMGKEYIIVEGFEERGILFAVMNRLRKAA 330


>pir||T41641 translation initiation protein SUA5-YRDC-YCIO-YWLC homolog -
           fission yeast (Schizosaccharomyces pombe)
           >gi|4164422|emb|CAA22839.1| (AL035247) similarity to
           yeast translation initiation protein Sua5p
           [Schizosaccharomyces pombe]
           Length = 408
           
 Score =  247 bits (625), Expect = 1e-64
 Identities = 150/344 (43%), Positives = 201/344 (57%), Gaps = 39/344 (11%)

Query: 29  VAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVL-------AKE- 80
           VAFPTETVYGLGA+A    AV  I++AK RPADNPLI+H+AS +QL  L       AK  
Sbjct: 56  VAFPTETVYGLGADARRTEAVLSIYKAKNRPADNPLIVHVASLDQLRRLLLSAYPKAKSE 115

Query: 81  -----------IPEEAEMLAKRFWPGPLTLVLP----KSEVVPRVITGGLDTVAVRMPAH 125
                      IP+    L K+FWPGPL+++LP     +  V  ++T G  T AVRMP H
Sbjct: 116 VKNQAHDSEEIIPKVYLPLIKKFWPGPLSILLPVVDEANPPVSPIVTAGQKTFAVRMPQH 175

Query: 126 EIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVID 185
            +AL LI +S+ P+AAPSAN S +PSPT A HV  D  GKI  I+DGG   +GVESTV++
Sbjct: 176 PVALALISISDSPLAAPSANASTRPSPTLAKHVYNDLQGKIPLILDGGACGVGVESTVVN 235

Query: 186 LTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVD-----TAKAPGMKYRHYAPSAE 240
               PPV+LRPGG+ LEEI+   G          K  D       + PGMKYRHY+P+A+
Sbjct: 236 GLCDPPVILRPGGISLEEIQSSGGAWERTKVFVAKKSDMETDFIPQTPGMKYRHYSPTAK 295

Query: 241 VIV-VEGPRDKVRRKIEELIAK--FKEEGKKVGVIGSGSYDADE--------VFYLGDTV 289
           V++ V           E+ +++    +E +K+GV+ S  ++ +           ++G   
Sbjct: 296 VLLFVNYTESDAYGVFEKYLSEQGITKEKQKIGVLCSKRWNEESFPSHCPFVFLHMGRDG 355

Query: 290 EEIARNLFKALRHMDRTGVDVILAEGVEEKGLGLAVMNRLRKAS 333
            EI +NLF  LR +D  GVD +L EGV E+  GLA+MNRL KA+
Sbjct: 356 HEITKNLFAQLRDLDLQGVDFVLVEGVSEENEGLAIMNRLGKAA 399


>gi|6321269 translation initiation protein; Sua5p [Saccharomyces cerevisiae]
           >gi|417826|sp|P32579|SUA5_YEAST SUA5 PROTEIN
           >gi|542359|pir||S41991 SUA5 protein - yeast
           (Saccharomyces cerevisiae) >gi|4566|emb|CAA45598.1|
           (X64319) essential  for normal growth and mitochondrial
           function [Saccharomyces cerevisiae]
           >gi|971384|emb|CAA59760.1| (X85757) G1660 [Saccharomyces
           cerevisiae] >gi|1322770|emb|CAA96881.1| (Z72691) ORF
           YGL169w [Saccharomyces cerevisiae]
           Length = 426
           
 Score =  240 bits (606), Expect = 2e-62
 Identities = 159/372 (42%), Positives = 211/372 (55%), Gaps = 52/372 (13%)

Query: 19  AAGFIRE-GKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE-- 75
           AA  IR+  + VAFPTETVYGLG +AL++N+V  I+ AK RP+DNPLI H++S +QL   
Sbjct: 55  AARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYRAKNRPSDNPLITHVSSIDQLNRK 114

Query: 76  ----------VLAKEIPEEAEMLAKRFWPGPLTLVLP----KSEVVPRVITGGLDTVAVR 121
                      L   IP     L    WPGPLT++LP    +   + ++ T    T AVR
Sbjct: 115 VFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALSKLTTADQPTFAVR 174

Query: 122 MPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVES 181
           +PA+ +A  LI LS+ PIAAPSAN S +PSPT A HV  D   KI  I+DGG  ++GVES
Sbjct: 175 IPANPVARALIALSDTPIAAPSANASTRPSPTLASHVYHDLKDKIPIILDGGACKVGVES 234

Query: 182 TVIDLTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSV----DTAKAPGMKYRHYAP 237
           TV+D    PP LLRPGG   EEI K+ GE      V  K      +  + PGMKYRHY+P
Sbjct: 235 TVVDGLCNPPTLLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKGEKVRTPGMKYRHYSP 294

Query: 238 SAEVIVV----EGP--------RDKVRRKIEELIAKFKEEGKKVGVIGSGSY-DAD---E 281
           SA+V+++    EG          ++++R IE  + K     KK+ ++ S    D+D   +
Sbjct: 295 SAKVVLLVPHCEGDGILKGVDRMERLKRLIETEL-KANSNIKKIAILTSLKLRDSDLQSK 353

Query: 282 VF-------------YLGDTVEEIARNLFKALRHMDRTG-VDVILAEGVEEKGLGLAVMN 327
           +F              LG + EEI  NLF ALR +D    VD+I  EG+ E+G GLAVMN
Sbjct: 354 IFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFVEGINEEGEGLAVMN 413

Query: 328 RLRKASGYRIIK 339
           RLRKA+    I+
Sbjct: 414 RLRKAAANNCIQ 425


>emb|CAC11447.1| (AL445063) sua5 related protein [Thermoplasma acidophilum]
           Length = 352
           
 Score =  237 bits (599), Expect = 1e-61
 Identities = 154/356 (43%), Positives = 214/356 (59%), Gaps = 38/356 (10%)

Query: 1   MTIIINV-RERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRP 59
           MT II++ R      +I  A   +R G  V FPTETVYGLGA A +  A K+IF AKGRP
Sbjct: 1   MTRIIHIDRSDYRRDQIVDAVDALRSGGTVVFPTETVYGLGALASNPEACKKIFIAKGRP 60

Query: 60  ADNPLIIHIASFEQLEVLAKEIPEEAEMLA--KRFWPGPLTLVLPKSEVVPRVITGGLDT 117
           +DNPLI+HI+S EQ    +   P+++  +    + WPGPLT+V+ K++ +  V+T GL T
Sbjct: 61  SDNPLIVHISSMEQF--FSYSDPDDSYPIEGLNKAWPGPLTVVVRKAQGISDVVTAGLPT 118

Query: 118 VAVRMPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRI 177
           VA+RMP   IA  LIE++  PIAAPSANIS +PS T +        G+++ IID G TR 
Sbjct: 119 VAIRMPDDPIAHDLIEMAG-PIAAPSANISTRPSITDSRDAIRFLDGRVDVIIDAGPTRF 177

Query: 178 GVESTVIDLTEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYG---KSVDTAK---APGMK 231
           G+EST+ID+T+ P  LLRPG   +E++E V G     P VYG   + +  AK    PGMK
Sbjct: 178 GIESTIIDITKRPAELLRPGSYAIEDLEPVFG-----PIVYGDVARGLGEAKIAITPGMK 232

Query: 232 YRHYAPSAEVIVVEGPRDKVRRKI----EELIAKFKEE----GKKVGVIGSGSYDADEVF 283
           YRHY+PS ++I+ E  R+  R+ +    E+++    EE     KK  +IG+   D D   
Sbjct: 233 YRHYSPSTKLILAE-TREVFRQILDTVDEDMVVLATEEMVDGHKKAIIIGT---DRD--- 285

Query: 284 YLGDTVEEIARNLFKALRHMDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRIIK 339
                +  +A NLF +   +D   VD+ L    EE+G+G A+MNR+RKAS YR +K
Sbjct: 286 -----LYSVAHNLFSSFIALDDMHVDLALIHPFEERGIGFALMNRIRKAS-YRTVK 335


>pir||T44498 hypothetical protein [imported] - Thermomonospora fusca
           >gi|5107073|gb|AAD39949.1|AF144563_3 (AF144563) unknown
           [Thermobifida fusca]
           Length = 335
           
 Score =  236 bits (597), Expect = 2e-61
 Identities = 138/326 (42%), Positives = 193/326 (58%), Gaps = 27/326 (8%)

Query: 19  AAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLA 78
           A   +R G LVAFPTETVYGLGA+A +  AV RIF AKGRPAD+PLI+H+AS E     A
Sbjct: 23  AVRVLRAGGLVAFPTETVYGLGADAANPAAVARIFAAKGRPADHPLIVHVASAESARDWA 82

Query: 79  KEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERP 138
              P  A  LA  FWPGPLTL+LP+S  VP  +TGG  TV +R+P   +AL L+E     
Sbjct: 83  ATFPPLARTLADAFWPGPLTLILPRSAQVPDAVTGGRATVGLRVPDQPVALALLERFGGG 142

Query: 139 IAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLRPGG 198
           IAAPSAN  G+ SPT+A HVA D   +++ ++DGG   +GVEST++++ +    +LR GG
Sbjct: 143 IAAPSANRFGRVSPTTAAHVAADLGDRVDLVLDGGPCTVGVESTIVEVADGRLTVLRTGG 202

Query: 199 LPLEEIEKVIGEIRIHPAVYGKSVDT-----AKAPGMKYRHYAPSAEVIVVEGPRDKVRR 253
           +  +++           AV G  VDT     A+APGM   HYAP+A V++ E        
Sbjct: 203 ITPDDL----------AAVTGAPVDTTPTGPARAPGMLAAHYAPAARVVLAEA------A 246

Query: 254 KIEELIAKFKEEGKKVGVIGSGSYDADE------VFYLGDTVEEIARNLFKALRHMDRTG 307
           +  + +A++ E+G +V V+   +   +       V     +  + AR L++ LR +D  G
Sbjct: 247 EAADTVAQWVEKGHRVAVLAETATVPENLPEGVVVLPSPASARDYARVLYQRLRDVDAAG 306

Query: 308 VDVILAEGVEEKGLGLAVMNRLRKAS 333
            DV++A   E  G+GLAV +RL +AS
Sbjct: 307 ADVVVAIPPEPAGIGLAVRDRLLRAS 332


>pir||G82243 conserved hypothetical protein VC1079 [imported] - Vibrio cholerae
           (group O1 strain N16961) >gi|9655547|gb|AAF94238.1|
           (AE004189) conserved hypothetical protein [Vibrio
           cholerae]
           Length = 329
           
 Score =  224 bits (566), Expect = 9e-58
 Identities = 127/321 (39%), Positives = 192/321 (59%), Gaps = 17/321 (5%)

Query: 16  IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
           I  AA  +++G+LVA PTETVYGL A+A    AVK+IF AKGRPA++PLI+H+ S EQL 
Sbjct: 22  IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLS 81

Query: 76  VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELS 135
             A +I  EA  LA+ FWPGPLTL+LPK++ V  V+TGGL++V +R+PAH + L +++  
Sbjct: 82  EWATDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTH 141

Query: 136 ERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLR 195
              +AAPSAN   K SPTSA  V +   G++  ++DGGE + G+EST++DLT  P  +LR
Sbjct: 142 RLAVAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQHGLESTIVDLTSKPFRVLR 201

Query: 196 PGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVIVVEGPRDKVRRKI 255
            G +   E+  V+G+  + P V+  +V     PG    HY P   + V++    ++  + 
Sbjct: 202 AGPITASELSAVLGQEVLQPQVHQVAV-----PGNVDSHYQPKTRLRVIDDLARELATQS 256

Query: 256 EELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEE---IARNLFKALRHMDRTGVDVIL 312
           +EL         ++ ++   +  A E   L    +E     + L+++L  +D+ GVD I 
Sbjct: 257 DEL---------RIALLNLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDEIW 307

Query: 313 AEGVEEKGLGLAVMNRLRKAS 333
            E   +    LAV +RLR+A+
Sbjct: 308 LERPPQGEAWLAVHDRLRRAA 328


>gi|11498387 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7429864|pir||E69347 conserved hypothetical protein
           AF0781 - Archaeoglobus fulgidus
           >gi|2649831|gb|AAB90461.1| (AE001051) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 309
           
 Score =  210 bits (530), Expect = 1e-53
 Identities = 122/325 (37%), Positives = 197/325 (60%), Gaps = 27/325 (8%)

Query: 16  IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
           IR A   +R G +VAFPTETVYG+G +A +E A++R++E KGR  + P I+ + S + + 
Sbjct: 12  IRKAVAVLRAGGIVAFPTETVYGMGCDATNEEALRRLYEIKGRSLNKPFIVGVWSRDYVG 71

Query: 76  VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELS 135
            +A E+ E AE L + F+PGPLTLVL    V+P +++     +AVRMPAHE+ L+L+E+ 
Sbjct: 72  KIA-EVDERAEKLMEAFFPGPLTLVLKSKGVMPSLLSPK-GKIAVRMPAHEVPLQLMEML 129

Query: 136 ERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLR 195
            +PI  PSAN+SG+PS     HV E+   +I+ ++  GE ++GVEST++DLTE P  +LR
Sbjct: 130 RKPIVVPSANLSGRPSLMRWEHVVEELGSRIDAVVK-GECKVGVESTIVDLTETPAKVLR 188

Query: 196 PGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVIVVEGPRDKVRRKI 255
            G + +E I+K + E+ + P               +   Y+ S +V V  G  ++  ++I
Sbjct: 189 VGAVSVESIKKHV-EVVVEP---------------RKETYSLSCQVYVFVG--ERALQRI 230

Query: 256 EELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKALRHMDRTGVDVILAEG 315
           +E + + ++ G+ V +  +     DE   +G + EE + NLF A+R  +    D+I+ EG
Sbjct: 231 KEFVDEAEKRGRVVVI--AREKITDETIVIGKSAEEYSANLFSAVREAESRRPDIIVIEG 288

Query: 316 VEEKGLGLAVMNRLRKASGYRIIKV 340
           VE +    A+M+RLR+ +G R+ +V
Sbjct: 289 VENE----AIMDRLRRLAGERVFRV 309


>pir||E70191 conserved hypothetical protein BB0734 - Lyme disease spirochete
           >gi|2688669|gb|AAC67081.1| (AE001173) conserved
           hypothetical protein [Borrelia burgdorferi]
           Length = 337
           
 Score =  201 bits (507), Expect = 7e-51
 Identities = 129/336 (38%), Positives = 204/336 (60%), Gaps = 12/336 (3%)

Query: 9   ERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHI 68
           E I   +I+ AA  I+ G+LV FPTETVYG+GANA +E+AVK IF  K RP +NPLI+H+
Sbjct: 5   EIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHV 64

Query: 69  ASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIA 128
            + ++++ L++ IP+ A ML K+F PGPLT VL KS  + R ++G LDTVA+R+PA++ A
Sbjct: 65  DTVKKIKELSEYIPKSALMLIKKFSPGPLTYVLKKSIKISRFVSGNLDTVAIRIPANKTA 124

Query: 129 LKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETR---IGVESTVI- 184
           L LI+ S+ PI APSANIS +PS T+     ++  G +  II   E +   IG+ESTV+ 
Sbjct: 125 LSLIKASKVPIVAPSANISKRPSSTNFEMALKELNGLVRGIIKPEENKDFNIGIESTVVG 184

Query: 185 -DLTEWPPVLLRPGGLPLEEIEKVI-GEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVI 242
            DL +   ++LRPG +  + IE  + G+  ++ A     ++  K+PG    HY P   V 
Sbjct: 185 FDLKD-NVLILRPGAITKKMIENELQGKYTVNYA--ETKMELEKSPGNIIEHYKPKIPVY 241

Query: 243 VVEGPRDKVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKALRH 302
           + +  +D +RR + +       +      + +  ++   +    +T+EE A+NL+K L +
Sbjct: 242 LFKS-QDNIRRYLNKDTKILITKATLKSYLFNFFWNKKNITVF-NTLEEYAQNLYKELVN 299

Query: 303 MDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRII 338
            +      IL+E ++++ LG ++ NR++KAS  R I
Sbjct: 300 SE-NNYKQILSEFLKDEELGHSINNRIKKASSNRFI 334


>pir||H71646 hypothetical protein RP848 - Rickettsia prowazekii
           >gi|3861373|emb|CAA15272.1| (AJ235273) unknown
           [Rickettsia prowazekii]
           Length = 313
           
 Score =  182 bits (457), Expect = 5e-45
 Identities = 124/328 (37%), Positives = 181/328 (54%), Gaps = 28/328 (8%)

Query: 16  IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
           I  A  FI+ GK+V FPTETVYG+GA+A +  A  +IF+ K RPA NPLI+H+ S  Q +
Sbjct: 2   INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVTSIVQAK 61

Query: 76  VLAKEIPEEAEMLAKRFWPGPLTLVLPKSE---VVPRVITGGLDTVAVRMPAHEIALKLI 132
            +  E  + AE +A +FWPGPL++V+P  +   + P V T GL+T+A+R+P++ IAL LI
Sbjct: 62  AIG-EFNKLAEKIASKFWPGPLSIVVPLKDNVNIAPSV-TAGLNTIALRIPSYPIALALI 119

Query: 133 ELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGE---TRIGVESTVIDLTEW 189
             S  PIAAPSAN S   SPT+A HV + F    E  I   E      G+EST+ID T  
Sbjct: 120 RQSVVPIAAPSANPSNYISPTNAEHVTKHFKDNREIFILAPEIYQCEYGLESTIIDTTTV 179

Query: 190 PPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVIVVEGPRD 249
            P +LR G +  E +E+++G ++I  A    S+   KAPGM  +HY+P+  V        
Sbjct: 180 IPTILREGFITSEILEELLG-VKILKASEINSI--VKAPGMLKKHYSPNVHV-------- 228

Query: 250 KVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKALRHMD----R 305
               ++  +    KE G   G        A  +   G+ + E A NL+  LR +D     
Sbjct: 229 ----RLNAINLNDKEIGLNFGNSNLTGKFALNLSTEGNII-EAAANLYSYLRILDDYAVS 283

Query: 306 TGVDVILAEGVEEKGLGLAVMNRLRKAS 333
             ++ I    V    +G A+ +RL++A+
Sbjct: 284 NDINCIAVAPVPLTNIGAAINDRLKRAA 311


>gi|11497366 conserved hypothetical protein [Borrelia burgdorferi]
           >gi|11497448|ref|NP_051542.1| conserved hypothetical
           protein [Borrelia burgdorferi]
           >gi|6382387|gb|AAF07698.1|AE001582_6 (AE001582)
           conserved hypothetical protein [Borrelia burgdorferi]
           >gi|6435847|gb|AAF08548.1|AE001583_3 (AE001583)
           conserved hypothetical protein [Borrelia burgdorferi]
           Length = 330
           
 Score =  162 bits (407), Expect = 4e-39
 Identities = 110/329 (33%), Positives = 179/329 (53%), Gaps = 16/329 (4%)

Query: 11  IEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIAS 70
           I E + +IA   I+ G+++ FPT+TVY +GAN  DE AV+ I   K +  + PL++++ +
Sbjct: 7   ISEDQFKIALKLIKMGEIIVFPTDTVYAIGANIYDEYAVRMINLVKKKSINEPLMLYVDT 66

Query: 71  FEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALK 130
            E+++ L+  +P+ A++L ++F PGPLT VL KS  +P+ I   LDTVA+R+P ++ AL 
Sbjct: 67  IEKIKELSSHVPKSAKILMEKFSPGPLTYVLKKSIKIPKFINNNLDTVAIRIPKNKTALN 126

Query: 131 LIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECII---DGGETRIGVESTVIDL- 186
           LI   + P+   SAN+S +PS TS     ++  G +  II      ++ IG+EST+I+  
Sbjct: 127 LIRKLKNPLVVSSANLSKRPSSTSFSMALKELNGLVGGIIMPKKNKDSNIGIESTIIEFD 186

Query: 187 TEWPPVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVIVVEG 246
           ++   ++LRPG +  + IEKV+G    +   Y K           YR   P       + 
Sbjct: 187 SKDNVIILRPGAITKKMIEKVLGS--RYKVNYAKETKIDLKKMFSYRLRIPVHTFKRGDN 244

Query: 247 PRDKVRRKIEELIAK--FKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKALRHMD 304
            R  ++   + LI +  FK          S  +D   +  L D++ E A NL+K L + +
Sbjct: 245 IRKYLKTNTKVLITRDTFK------FYFFSFLWDKKNII-LFDSLIEYAENLYKELVNAE 297

Query: 305 RTGVDVILAEGVEEKGLGLAVMNRLRKAS 333
               D ++ E VE + LG A+ NR+ KAS
Sbjct: 298 EK-YDQVIVEIVENEELGYAINNRIVKAS 325


>sp|Q10618|YD01_MYCTU HYPOTHETICAL 22.6 KDA PROTEIN RV1301 >gi|7476716|pir||A70774
           hypothetical protein Rv1301 - Mycobacterium tuberculosis
            (strain H37RV) >gi|1322425|emb|CAA97734.1| (Z73419)
           hypothetical protein Rv1301 [Mycobacterium tuberculosis]
           Length = 217
           
 Score =  134 bits (334), Expect = 1e-30
 Identities = 72/191 (37%), Positives = 108/191 (55%), Gaps = 1/191 (0%)

Query: 19  AAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLA 78
           A G I+ G+LV  PT+TVYG+GA+A D +AV  +  AKGR  D P+ + + S+  +E L 
Sbjct: 20  AVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWHTIEGLV 79

Query: 79  KEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERP 138
             +P+ A  L + FWPG L+LV+ ++  +   +     TV +RMP H +A++L+     P
Sbjct: 80  YSMPDGARELIRAFWPGALSLVVVQAPSLQWDLGDAHGTVMLRMPLHPVAIELLR-EVGP 138

Query: 139 IAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLRPGG 198
           +A  SANISG P P  A          +   +D G +     ST++DLT   P +LRPG 
Sbjct: 139 MAVSSANISGHPPPVDAEQARSQLGDHVAVYLDAGPSEQQAGSTIVDLTGATPRVLRPGP 198

Query: 199 LPLEEIEKVIG 209
           +  E I +V+G
Sbjct: 199 VSTERIAEVLG 209


>gb|AAG20422.1| (AE005114) Vng2312c [Halobacterium sp. NRC-1]
           Length = 198
           
 Score =  132 bits (329), Expect = 5e-30
 Identities = 76/183 (41%), Positives = 109/183 (59%), Gaps = 8/183 (4%)

Query: 19  AAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLA 78
           AA  +REG LV FPTETVYGL A+ALD +A++  FEAK RP + PL     +F  +E   
Sbjct: 10  AAEALREGGLVVFPTETVYGLAADALDPDAIEAAFEAKRRPREKPLSF---AFPDVEAAV 66

Query: 79  KEIP--EEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSE 136
           + +   E        F PGP+T+V  K + VP V+TGG D V VR+P  E+A+ L+E   
Sbjct: 67  EHVAVGETERAFMAEFLPGPVTVVCEKRDSVPDVLTGGRDRVGVRVPDSEVAVALLE-RV 125

Query: 137 RPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLRP 196
            P+ A SAN+SG+PS T+   +   F  +++ ++D GE+  G  STV+D+      +LR 
Sbjct: 126 APLTATSANVSGEPSVTNPAALDPAFRARVDAVVDAGESPGGTGSTVVDVARGE--ILRA 183

Query: 197 GGL 199
           G +
Sbjct: 184 GAV 186


>pir||C69093 conserved hypothetical protein MTH1692 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622823|gb|AAB86164.1| (AE000927) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 208
           
 Score =  131 bits (327), Expect = 9e-30
 Identities = 71/186 (38%), Positives = 111/186 (59%), Gaps = 4/186 (2%)

Query: 19  AAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLA 78
           A   +  G +V +PT+T+YGLG NALDE+AV+R+F  KGR    P+ I ++  +++   +
Sbjct: 19  AISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFS 78

Query: 79  KEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERP 138
           +   +  E++ +R  PGP T+VL ++E++P VITGG   V +R+P  EI  ++   +  P
Sbjct: 79  RPSGDAMELM-ERILPGPYTVVLERNELIPDVITGGSSRVGIRVPDDEICRRI--AARFP 135

Query: 139 IAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLRPGG 198
           + A SANISGKP       +  D    ++ ++D G+      STVIDLT  PP +LR G 
Sbjct: 136 VTATSANISGKPPSPRLEEIVRDL-DAVDLVLDAGDCLDMEPSTVIDLTVNPPRVLRRGK 194

Query: 199 LPLEEI 204
            PL+ +
Sbjct: 195 GPLDPV 200


>emb|CAB94533.1| (AL359152) conserved hypothetical protein [Streptomyces coelicolor
           A3(2)]
           Length = 215
           
 Score =  130 bits (324), Expect = 2e-29
 Identities = 76/198 (38%), Positives = 108/198 (54%), Gaps = 1/198 (0%)

Query: 16  IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
           +R AA  +R G+LV  PT+TVYG+GA+A    AV  + EAKGR  + P  + I S   L 
Sbjct: 17  LREAASAVRRGELVVLPTDTVYGIGADAFAAEAVGDLLEAKGRGRNMPSPVLIGSPNTLH 76

Query: 76  VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELS 135
            L  +  E A  L   FWPG LTLV      +   +     TVAVRMP H +A++L+   
Sbjct: 77  GLVTDFSEMAWELVDAFWPGALTLVAKHQPSLQWDLGETRGTVAVRMPLHPVAIELL-TE 135

Query: 136 ERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLR 195
             P+A  SAN++G P+P       +     +   +DGG T   V S+++D+T   PVLLR
Sbjct: 136 VGPMAVSSANLTGHPAPEDCDAAQQMLGDSVSVYLDGGPTPGIVPSSIVDVTREVPVLLR 195

Query: 196 PGGLPLEEIEKVIGEIRI 213
            G L  EE+ KV+ ++ +
Sbjct: 196 AGALSAEELRKVVPDLEV 213


>sp|P45831|YD01_MYCLE HYPOTHETICAL 22.7 KDA PROTEIN IN RFE-HEMK INTERGENIC REGION
           >gi|7476070|pir||T09983 hypothetical protein sua5 -
           Mycobacterium leprae >gi|699330|gb|AAA63091.1| (U15186)
           yeast SUA5 protein [Mycobacterium leprae]
           Length = 220
           
 Score =  121 bits (300), Expect = 1e-26
 Identities = 67/196 (34%), Positives = 107/196 (54%), Gaps = 1/196 (0%)

Query: 16  IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
           I  A   ++ G+LV  PT+TVYG+GA+A D  AV  +  AKGR  D P+ + + S+  +E
Sbjct: 20  IASAVAALKGGRLVVMPTDTVYGIGADAFDRAAVAALLSAKGRGRDMPVGVLVGSWHTIE 79

Query: 76  VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELS 135
            L   +P+ A  L + FWPG L+LV+  +  +   +     TV +RMP H +A++L+   
Sbjct: 80  GLVYTMPDGARELIRAFWPGALSLVVVHAPSLNWDLGDAHGTVMLRMPLHSVAIELL-CE 138

Query: 136 ERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLR 195
             P+A  SAN+SG+P+              +   +D G +     ST++DLTE  P +LR
Sbjct: 139 VGPMAVSSANVSGQPAAVDVDGARGQLGELVGVYLDAGPSAQQAASTIVDLTEATPRILR 198

Query: 196 PGGLPLEEIEKVIGEI 211
            G + +  I +V+G +
Sbjct: 199 AGPVSVARIAEVLGVV 214


>sp|Q60369|Y062_METJA HYPOTHETICAL PROTEIN MJ0062 >gi|2128103|pir||F64307 conserved
           hypothetical protein MJ0062 - Methanococcus jannaschii
           >gi|1498824|gb|AAB98044.1| (U67464) hypothetical protein
           [Methanococcus jannaschii]
           Length = 207
           
 Score =  111 bits (274), Expect = 2e-23
 Identities = 65/206 (31%), Positives = 118/206 (56%), Gaps = 9/206 (4%)

Query: 4   IINVRERIEEWKIRIAAGFIRE---GKLVAFPTETVYGLGANALDENAVKRIFEAKGRPA 60
           II + E  EE + ++     +E   GK+V   T+T+YG+ ANAL+E AV++++  K R  
Sbjct: 7   IIKIYELNEEERKKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYNIKRREF 66

Query: 61  DNPLIIHIASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAV 120
           + PL I +    ++E  A  + + A+ +  +F PGPLT++L K   +P ++    D + +
Sbjct: 67  NKPLSICVRDKNEIEKYAY-VNDLAKKIIDKFLPGPLTIILKKKPGIPDIVAK--DYIGI 123

Query: 121 RMPAHEIALKLIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVE 180
           R+P   I   + ELS  P+   SANISGK SPT+   + ++   K++ +ID G+ +    
Sbjct: 124 RIPDEPI---IRELSIVPLTTTSANISGKESPTTVDEIDKEVLKKVDYVIDIGKCKYSKP 180

Query: 181 STVIDLTEWPPVLLRPGGLPLEEIEK 206
           ST+I + +   + +R G +P++++ +
Sbjct: 181 STIIKIEDDKIISIREGVIPIQKLAR 206


>pir||G81704 conserved hypothetical protein TC0414 [imported] - Chlamydia
           muridarum (strain Nigg) >gi|7190456|gb|AAF39270.1|
           (AE002308) conserved hypothetical protein [Chlamydia
           muridarum]
           Length = 280
           
 Score =  108 bits (266), Expect = 1e-22
 Identities = 70/187 (37%), Positives = 108/187 (57%), Gaps = 10/187 (5%)

Query: 23  IREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLA-KEI 81
           IR G++ AFPT+TVYGLG + L   A K++F  K R     L ++++S E+LE +A + +
Sbjct: 9   IRSGQVFAFPTDTVYGLGVSFLIPEADKQLFALKRRNPQKALSVYVSSLEELEYVAQRRL 68

Query: 82  PEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERPIAA 141
            E +  +A++F PGPLTL+   +   PR       T+  R+  H I  ++I+    P+ A
Sbjct: 69  GEASIKIAQKFLPGPLTLITKHNN--PRF---SQKTLGFRIVEHPIVKQIIQ-EVGPLLA 122

Query: 142 PSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLRPGGLPL 201
            SAN+SG PS  S+  V +DF  K + ++  G   IG+ESTV+D  E   ++ R G +  
Sbjct: 123 TSANVSGFPSAVSSDEVKQDFPEK-DILVISGTCSIGLESTVVDAEE--RIIYREGVVSA 179

Query: 202 EEIEKVI 208
            EIE V+
Sbjct: 180 AEIEDVL 186


>pir||C83644 conserved hypothetical protein PA0022 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9945841|gb|AAG03412.1|AE004441_13 (AE004441)
           conserved hypothetical protein [Pseudomonas aeruginosa]
           Length = 185
           
 Score =  107 bits (265), Expect = 2e-22
 Identities = 56/162 (34%), Positives = 97/162 (59%), Gaps = 1/162 (0%)

Query: 11  IEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIAS 70
           I  ++ + AA  +REG ++A+PTE V+GLG +  +E+AV R+   K RP +  LI+  A+
Sbjct: 2   ISSFRAQCAARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAAN 61

Query: 71  FEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALK 130
             QL+ L +++P+         WPGP T ++P  E +P  +TG  D+VAVR+  H +  +
Sbjct: 62  IHQLDFLLEDLPDVWLDRLAGTWPGPNTWLVPHQERLPEWVTGVHDSVAVRVTDHPLVQE 121

Query: 131 LIELSERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDG 172
           L  L+  P+ + SAN +G+P+  +   V + F+ +++ I+ G
Sbjct: 122 LCHLT-GPLISTSANPAGRPAARTRLRVEQYFHDELDAILGG 162


>pir||B71552 probable sua5-related protein - Chlamydia trachomatis  (serotype D,
           strain UW3/Cx) >gi|3328537|gb|AAC67728.1| (AE001287)
           SuA5 Superfamily-related Protein [Chlamydia trachomatis]
           Length = 281
           
 Score =  103 bits (255), Expect = 3e-21
 Identities = 68/188 (36%), Positives = 109/188 (57%), Gaps = 10/188 (5%)

Query: 23  IREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLAKE-I 81
           I+ G++ AFPT+TVYGLG +    +A +R+F  K R +   L ++++S E+LE +A++ +
Sbjct: 10  IKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKHRSSQKALSVYVSSLEELEAVAQQSL 69

Query: 82  PEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERPIAA 141
              +  + ++F PGPLTL+   +   PR       T+  R+  H I  ++I+    P  A
Sbjct: 70  GASSRKIIQKFLPGPLTLITKHNN--PRF---PQKTLGFRIVNHPIVQQIIQ-KVGPFLA 123

Query: 142 PSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLRPGGLPL 201
            SAN+SG PS  SA  V +DF  + + ++  GE  IG+ESTVID  E   ++ R   + +
Sbjct: 124 TSANLSGFPSAVSADEVKQDF-PEEDIVMISGECSIGLESTVIDPEE--RIVYRESAISI 180

Query: 202 EEIEKVIG 209
            EIE V+G
Sbjct: 181 AEIETVLG 188


>pir||E82370 Sua5/YciO/YrdC family protein VC0054 [imported] - Vibrio cholerae
           (group O1 strain N16961) >gi|9654448|gb|AAF93232.1|
           (AE004096) Sua5/YciO/YrdC family protein [Vibrio
           cholerae]
           Length = 188
           
 Score = 98.7 bits (242), Expect = 9e-20
 Identities = 54/156 (34%), Positives = 85/156 (53%), Gaps = 2/156 (1%)

Query: 19  AAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLA 78
           A   +R+G ++A+PTE V+GLG +  ++ A+ R+   K RP +  +I+  AS+ QL    
Sbjct: 10  AVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLRPYV 69

Query: 79  KEIPEEAEMLAKRF--WPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSE 136
            E    AE L +    WP PLT V+P S   P  + G  DTVAVR+  H +  KL     
Sbjct: 70  DETQLTAEQLTQVLASWPAPLTWVMPASGDTPSWVRGQFDTVAVRVSDHPVVQKLCLAFG 129

Query: 137 RPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDG 172
           +P+ + SAN+SG+P+  +   V      +I  +++G
Sbjct: 130 KPLTSTSANLSGQPACVTQQEVMVQLGNQIAVVVEG 165


>sp|P45748|YRDC_ECOLI 20.8 KDA PROTEIN IN AROE-SMG INTERGENIC REGION
           >gi|7466539|pir||E65120 hypothetical protein in aroE-smg
           intergenic region - Escherichia coli (strain K-12)
           >gi|2367210|gb|AAC76307.1| (AE000406) orf, hypothetical
           protein [Escherichia coli K12]
           Length = 190
           
 Score = 97.9 bits (240), Expect = 1e-19
 Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 4/150 (2%)

Query: 16  IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
           I  A   + E +++A+PTE V+G+G +   E AV R+ E K RP D  LI+  A++EQL+
Sbjct: 10  IAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLK 69

Query: 76  VLAKEI---PEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLI 132
               +      + E +  R WPGP+T V P     PR +TG  D++AVR+  H + + L 
Sbjct: 70  PYIDDTMLTDVQRETIFSR-WPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALC 128

Query: 133 ELSERPIAAPSANISGKPSPTSAHHVAEDF 162
           +   +P+ + SAN+SG P   +   V   F
Sbjct: 129 QAYGKPLVSTSANLSGLPPCRTVDEVRAQF 158


>gb|AAA58079.1| (U18997) ORF_f176 [Escherichia coli]
           Length = 176
           
 Score = 95.6 bits (234), Expect = 8e-19
 Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 4/144 (2%)

Query: 22  FIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLAKEI 81
           F  + +++A+PTE V+G+G +   E AV R+ E K RP D  LI+  A++EQL+    + 
Sbjct: 2   FSMKERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDT 61

Query: 82  ---PEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERP 138
                + E +  R WPGP+T V P     PR +TG  D++AVR+  H + + L +   +P
Sbjct: 62  MLTDVQRETIFSR-WPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKP 120

Query: 139 IAAPSANISGKPSPTSAHHVAEDF 162
           + + SAN+SG P   +   V   F
Sbjct: 121 LVSTSANLSGLPPCRTVDEVRAQF 144


>pir||E70357 conserved hypothetical protein aq_651 - Aquifex aeolicus
           >gi|2983259|gb|AAC06854.1| (AE000700) hypothetical
           protein [Aquifex aeolicus]
           Length = 198
           
 Score = 95.6 bits (234), Expect = 8e-19
 Identities = 64/193 (33%), Positives = 105/193 (54%), Gaps = 8/193 (4%)

Query: 16  IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
           ++ A   +++G ++  PT+T+YG+ A+A +E AVKR+++ + RP+  P ++ +     LE
Sbjct: 10  LKEAVEILKKGGIIVAPTDTLYGILADATNEEAVKRLYKIR-RPSGKPFLVLLPDESWLE 68

Query: 76  VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELS 135
            L  ++ EE + L K      LTLV  K+      ++ G  T+AVR+P       L+   
Sbjct: 69  KLCLDVKEEHKKLLK---VEGLTLVFRKTCDKLDYVSKG--TLAVRLPQKGFIRDLLSEL 123

Query: 136 ERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLR 195
           ++P+ APS N  GK    S       F  K++  ID G  + G  ST++DLTE   + LR
Sbjct: 124 KKPVVAPSVNPEGKKPAESVEEAYNYFGNKVDLYIDAGVIK-GEPSTILDLTEGVKI-LR 181

Query: 196 PGGLPLEEIEKVI 208
            G +  EEIEK++
Sbjct: 182 EGKVKKEEIEKIL 194


>sp|P44807|YRDC_HAEIN HYPOTHETICAL PROTEIN HI0656 >gi|1074469|pir||B64156 hypothetical
           protein HI0656 - Haemophilus influenzae (strain Rd KW20)
           >gi|1573655|gb|AAC22315.1| (U32748) conserved
           hypothetical protein [Haemophilus influenzae Rd]
           Length = 183
           
 Score = 81.9 bits (199), Expect = 1e-14
 Identities = 46/145 (31%), Positives = 78/145 (53%), Gaps = 2/145 (1%)

Query: 20  AGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE--VL 77
           A  +R+ ++VA+PTE V+GLG N   E+AVK++ + K RP +  LI+   S +     V 
Sbjct: 7   ADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVD 66

Query: 78  AKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSER 137
            ++I +E     +  +  P T ++P     P  +TG  D++A+R+  H     L EL+  
Sbjct: 67  FEQINDEQLSRLQGKYERPTTWIVPAKSTTPHFLTGKFDSIAIRLCDHPSVKALCELTGF 126

Query: 138 PIAAPSANISGKPSPTSAHHVAEDF 162
            + + SAN++G+P   +A  V   F
Sbjct: 127 ALTSTSANLTGEPPCRTADEVRLQF 151


>sp|P57561|Y494_BUCAI HYPOTHETICAL PROTEIN BU494 >gi|10039153|dbj|BAB13187.1| (AP001119)
           hypothetical protein [Buchnera sp. APS]
           Length = 175
           
 Score = 80.8 bits (196), Expect = 2e-14
 Identities = 48/147 (32%), Positives = 80/147 (53%), Gaps = 3/147 (2%)

Query: 28  LVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLAKEIPEEAEM 87
           ++A+PTE+++GLG +   + AVK++   K R  +  LI+  + F+Q+++   E     + 
Sbjct: 7   VIAYPTESMFGLGCDPNSKKAVKKLLNLKNRSIEKGLILVASDFDQIKMYVNENILSNKQ 66

Query: 88  LAKRF--WPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERPIAAPSAN 145
             K F  WPGP T +LP     P  +TG  +TVAVR+ AH   +KL     + + + SAN
Sbjct: 67  KKKIFFHWPGPFTFLLPAKPNTPYWLTGKFNTVAVRVSAHFEIIKLCNAFGQAVVSTSAN 126

Query: 146 ISGKPSPTSAHHVAEDFYGKIECIIDG 172
           IS      ++  V + F GK   +++G
Sbjct: 127 ISNMTPCFTSEEVFKCF-GKDFPLLNG 152


>pir||D81000 conserved hypothetical protein NMB2150 [imported] - Neisseria
           meningitidis (group B strain MD58)
           >gi|7227408|gb|AAF42458.1| (AE002563) conserved
           hypothetical protein [Neisseria meningitidis MC58]
           Length = 189
           
 Score = 80.4 bits (195), Expect = 3e-14
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 2/165 (1%)

Query: 22  FIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLAKEI 81
           ++++G LVA+PTE+ YGLG       A+ ++   K RP    +I+    FEQL+ L +  
Sbjct: 18  YLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMP 77

Query: 82  PEEAEMLAKRFWPGPLTLVL-PKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERPIA 140
            E  + + ++ WP P T +L  KS V+P +       +AVR+PAH  A +L +  + P+ 
Sbjct: 78  SENLQDMLRKEWPAPKTFLLSAKSCVLPELRGKQRSKLAVRVPAHVGARRLCQALQTPLV 137

Query: 141 APSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVID 185
           + S N +GK +  +   V   F G+   I+ G   R    S +ID
Sbjct: 138 STSCNRAGKRACRTEREVRRQF-GRDVWIVGGRIGRQKSPSQIID 181


>pir||A82018 hypothetical protein NMA0237 [imported] - Neisseria meningitidis
           (group A strain Z2491) >gi|7378999|emb|CAB83545.1|
           (AL162752) hypothetical protein NMA0237 [Neisseria
           meningitidis Z2491]
           Length = 200
           
 Score = 80.4 bits (195), Expect = 3e-14
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 2/165 (1%)

Query: 22  FIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLAKEI 81
           ++++G LVA+PTE+ YGLG       A+ ++   K RP    +I+    FEQL+ L +  
Sbjct: 29  YLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMP 88

Query: 82  PEEAEMLAKRFWPGPLTLVL-PKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERPIA 140
            E  + + ++ WP P T +L  KS V+P +       +AVR+PAH  A +L +  + P+ 
Sbjct: 89  SENLQDMLRKEWPAPKTFLLSAKSCVLPELRGKQRSKLAVRVPAHVGARRLCQALQTPLV 148

Query: 141 APSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVID 185
           + S N +GK +  +   V   F G+   I+ G   R    S +ID
Sbjct: 149 STSCNRAGKRACRTEREVRRQF-GRDVWIVGGRIGRQKSPSQIID 192


>dbj|BAB09832.1| (AB005246) gene_id:MUP24.1~pir||T31603~similar to unknown protein
           [Arabidopsis thaliana]
           Length = 239
           
 Score = 79.6 bits (193), Expect = 5e-14
 Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 10/181 (5%)

Query: 23  IREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLA--KE 80
           I+  K++A PT+T+YG   +A    AV RI+E KGR   +PL I +     ++ +A    
Sbjct: 34  IKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKRVATTSH 93

Query: 81  IPEEAEMLAKRFWPGPLTLVLPKSE--VVPRVITGGLDTVAVRMPAHEIALKLIELSERP 138
           +P     L     PGP+TLVL + E  ++ + +  G+ T+ VR+P  E   ++   S   
Sbjct: 94  LPHG---LLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGSGSV 150

Query: 139 IAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIG-VESTVIDLTEWPPV-LLRP 196
           +A  SAN+SG  S        E+ +     + DGG    G   ST++DLT+     ++RP
Sbjct: 151 LALTSANLSGDRSSVCVKDF-ENLWQHCAYVYDGGLLPSGRAGSTIVDLTKVGKYKIIRP 209

Query: 197 G 197
           G
Sbjct: 210 G 210


>pir||S74580 hypothetical protein sll0216 - Synechocystis sp. (strain PCC 6803)
           >gi|1651805|dbj|BAA16732.1| (D90900) hypothetical
           protein [Synechocystis sp.]
           Length = 210
           
 Score = 79.2 bits (192), Expect = 6e-14
 Identities = 50/178 (28%), Positives = 94/178 (52%), Gaps = 4/178 (2%)

Query: 23  IREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLAKEIP 82
           +R+G ++ +PT+TVY +G +  D+NAV+R+ + K    + PL    +S   +   A  + 
Sbjct: 24  LRQGAIMLYPTDTVYAIGCDLNDKNAVQRVRQLKQLSNNKPLTFLCSSLSNIAEYA-VVA 82

Query: 83  EEAEMLAKRFWPGPLTLVLPKSEVVPR-VITGGLDTVAVRMPAHEIALKLIELSERPIAA 141
           ++A  L ++  PGP T +LP ++ VP+ V+     T  +R+P   I  ++++    PI +
Sbjct: 83  DDAYRLMRKLIPGPYTFLLPATKQVPKLVVEPKRKTTGIRVPDRPICQEILQSLGNPIIS 142

Query: 142 PSANISGKPSPTSAHHV-AEDFYGKIECIIDGGETRIGVE-STVIDLTEWPPVLLRPG 197
            SA++  +     A      D + K+  II   +   G + S++ID T+  P ++R G
Sbjct: 143 TSAHLPDQDEFVMAEKAKLFDLFDKLVDIIIDDDREPGYQTSSIIDFTDKEPKVVREG 200


>pir||S75670 hypothetical protein sll1866 - Synechocystis sp. (strain PCC 6803)
           >gi|1653316|dbj|BAA18231.1| (D90912) hypothetical
           protein [Synechocystis sp.]
           Length = 199
           
 Score = 78.0 bits (189), Expect = 1e-13
 Identities = 56/140 (40%), Positives = 79/140 (56%), Gaps = 8/140 (5%)

Query: 27  KLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQ-LEVLAKEIPEEA 85
           ++V+FPT+TV  L      EN+   I+E K R A  PLI+  A+ EQ L  LA    E+ 
Sbjct: 17  RVVSFPTDTVPALAVRP--ENSAL-IYELKQREASKPLILMAATVEQILPYLAGSQREKQ 73

Query: 86  --EMLAKRFWPGPLTLVLPKSEVVPRVITGGLD-TVAVRMPAHEIALKLIELSERPIAAP 142
             + +   +WPG LTLVLP SE +P  I    D T+ VR+P   I+L+++ L   P+A  
Sbjct: 74  LWQAVMAEYWPGALTLVLPCSEKLPPEINPRQDQTIGVRIPRQAISLEIL-LQTGPLATT 132

Query: 143 SANISGKPSPTSAHHVAEDF 162
           SAN+SG+P       +AE F
Sbjct: 133 SANLSGQPPLEKLADIAETF 152


>pir||T31603 hypothetical protein Y48C3A.u - Caenorhabditis elegans
           >gi|5832914|emb|CAB55118.1| (AL117203) predicted using
           Genefinder~contains similarity to Pfam domain: PF01300
           (SUA5/yciO/yrdC family), Score=93.4, E-value=1.5e-24,
           N=1~cDNA EST yk139a7.3 comes from this gene~cDNA EST
           yk139a7.5 comes from this gene [Caenorhabditis elegans]
           Length = 244
           
 Score = 78.0 bits (189), Expect = 1e-13
 Identities = 67/219 (30%), Positives = 109/219 (49%), Gaps = 12/219 (5%)

Query: 9   ERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHI 68
           + IEE        F+R G +VA PT+T+YG+       +   R++  K RP + PL I +
Sbjct: 13  DNIEEAIDAAVCVFLRGG-IVALPTDTLYGISTLLQYSD---RLYALKQRPYEKPLGIFL 68

Query: 69  ASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIA 128
            S   +++++++   +   LA    PGP+TL+  +   +P     G+  VA R+P   I 
Sbjct: 69  PSPTAMKLVSRQTISDE--LANCLLPGPVTLMFERLPCLPAEFNPGVVNVACRVPDCPIV 126

Query: 129 LKLIELSERPIAAPSANISGKP-SPTSAHHVAEDFYGKIECIIDGGE-TRIGVESTVIDL 186
             + +   +P+A  SAN+SG   +PTS  H   D +  I+ I+D G     G  ST++DL
Sbjct: 127 STICKKLGQPLAQTSANVSGSSLNPTSIDHF-RDLHPNIDLILDAGSIISSGEGSTIVDL 185

Query: 187 T-EWPPVLLRPGGLPLEEIEKV--IGEIRIHPAVYGKSV 222
           T E    ++R G    E ++K+   G  +I P     SV
Sbjct: 186 TVESGFRIVRSGCAEKETMQKLKSFGLTKIQPPDVTNSV 224


>pir||H75343 SUA5-related protein - Deinococcus radiodurans (strain R1)
           >gi|6459642|gb|AAF11415.1|AE002026_3 (AE002026)
           SUA5-related protein [Deinococcus radiodurans]
           Length = 230
           
 Score = 76.1 bits (184), Expect = 6e-13
 Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 11/145 (7%)

Query: 16  IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
           +R AA  +  G +VA+PTETV+GL A      A   ++  KGR A+ PL +         
Sbjct: 23  LRAAADVLDRGGVVAYPTETVWGLAARPA---AAAELYRRKGREANKPLQLSCPG--AAA 77

Query: 76  VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVA------VRMPAHEIAL 129
            LA  +P  A +     WPGPLT+V P           G + VA      +R+PAH +AL
Sbjct: 78  ALALAVPSPALLALSACWPGPLTVVTPGRPERLEDWGAGAEAVAPDGWLGLRVPAHPVAL 137

Query: 130 KLIELSERPIAAPSANISGKPSPTS 154
            L+  +  P+A  S N SG+ + T+
Sbjct: 138 ALLSAAGGPLATTSLNPSGQAAATT 162


>pir||A82746 conserved hypothetical protein XF0919 [imported] - Xylella
           fastidiosa (strain 9a5c)
           >gi|9105840|gb|AAF83729.1|AE003931_6 (AE003931)
           conserved hypothetical protein [Xylella fastidiosa]
           Length = 187
           
 Score = 75.3 bits (182), Expect = 9e-13
 Identities = 48/156 (30%), Positives = 74/156 (46%), Gaps = 10/156 (6%)

Query: 23  IREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFE------QLEV 76
           +++G ++A+PTE V+GLG +   E AV  +   K R +   LI+  A          L+ 
Sbjct: 14  LQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQDWLDLDT 73

Query: 77  LAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSE 136
           L+ E   E +      WPGP T VLP S   P  ITG  + +AVR+ AH +   L     
Sbjct: 74  LSPERLHEVQTS----WPGPHTWVLPASTRAPHWITGHHNGLAVRISAHPLVSALCRAWN 129

Query: 137 RPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDG 172
             + + SAN++G+P       +       +  I+DG
Sbjct: 130 MALISTSANVAGQPPARRREDLDPSLLPHLAGIVDG 165


>sp|P45103|YCIO_HAEIN HYPOTHETICAL PROTEIN HI1198 >gi|1074679|pir||I64168 probable
           translation factor HI1198 - Haemophilus influenzae
           (strain Rd KW20) >gi|1574127|gb|AAC22852.1| (U32799)
           conserved hypothetical protein [Haemophilus influenzae
           Rd]
           Length = 207
           
 Score = 74.9 bits (181), Expect = 1e-12
 Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 7/186 (3%)

Query: 16  IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
           I  A   +++G ++ +PT++ Y LG    D++A+ RI   +  P  +   +  +   +L 
Sbjct: 17  INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76

Query: 76  VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVP-RVITGGLDTVAVRMPAHEIALKLIEL 134
             A+ +   A  L K   PG  T +L  ++ +P R++T    T+ +R+P ++IAL L+  
Sbjct: 77  TYAR-VNNTAYRLIKNNTPGRYTFILTATKELPRRLMTSKRKTIGLRVPDNKIALDLLSA 135

Query: 135 SERPIAAPSANISGKPSPTSA--HHVAEDFYGKIECIIDGGETRIGVE-STVIDLTEWPP 191
              PI + S  +  +   T +    + +    +++ II GG   +G E +TV+DLTE  P
Sbjct: 136 LGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGG--YLGQEPTTVVDLTEESP 193

Query: 192 VLLRPG 197
           V+LR G
Sbjct: 194 VILREG 199


>pir||C72098 Sua5/YciO/YrdC family protein CP0489 [imported] - Chlamydophila
           pneumoniae (strains CWL029 and AR39)
           >gi|4376543|gb|AAD18419.1| (AE001612) SuA5
           Superfamily-related Protein [Chlamydophila pneumoniae
           CWL029] >gi|7189407|gb|AAF38319.1| (AE002210)
           Sua5/YciO/YrdC family protein [Chlamydophila pneumoniae
           AR39] >gi|8978644|dbj|BAA98480.1| (AP002546) SuA5
           superfamily-related protein [Chlamydophila pneumoniae
           J138]
           Length = 286
           
 Score = 72.2 bits (174), Expect = 8e-12
 Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 11/188 (5%)

Query: 23  IREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE-VLAKEI 81
           I +GK+VA PT+TVYG   +     A +R++  K R       +++ S E +E +    +
Sbjct: 19  IHQGKIVALPTDTVYGFVLSLYASEAEERLYALKDREPSKAFALYVNSIEDIENISGYPL 78

Query: 82  PEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERPIAA 141
              A+ LA+ F PG +TLV+      PR      +T+A R+  H +  ++++     I  
Sbjct: 79  SPTAKKLAQLF-PGAITLVVKHRN--PRF---PKETLAFRIVDHSVVREIVDHCGTLIGT 132

Query: 142 PSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLRPGGLPL 201
            SAN+S  PS  +A  +  DF     CI DG  +  G+ESTV+     P  + R G +  
Sbjct: 133 -SANLSEFPSALTAQEIFADFADHDLCIFDGPCSH-GLESTVV--ASDPLYIYREGLISR 188

Query: 202 EEIEKVIG 209
             IE + G
Sbjct: 189 SVIENIAG 196


>pir||F64874 probable translation factor yciO - Escherichia coli
           >gi|1742059|dbj|BAA14801.1| (D90764) ORF_ID:o253#4;
           similar to [SwissProt Accession Number P45847]
           [Escherichia coli] >gi|1742075|dbj|BAA14816.1| (D90765)
           ORF_ID:o253#4; similar to [SwissProt Accession Number
           P45847] [Escherichia coli] >gi|1787521|gb|AAC74349.1|
           (AE000224) orf, hypothetical protein [Escherichia coli
           K12]
           Length = 218
           
 Score = 70.6 bits (170), Expect = 2e-11
 Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 6/185 (3%)

Query: 16  IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
           I  A   +R+G ++ +PT++ Y LG    D+NA++RI   +  P  +   +      +L 
Sbjct: 29  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 88

Query: 76  VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVP-RVITGGLDTVAVRMPAHEIALKLIEL 134
             +  +   A  L K   PG  T +L  ++ VP R++     T+ +R+P++ IA  L+E 
Sbjct: 89  TYS-FVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEA 147

Query: 135 SERPIAAPSANISGKP-SPTSAHHVAEDFYGKIECIIDGGETRIGVE-STVIDLTEWPPV 192
              P+ + S  + G   + +    + +    +++ II GG   +G + +TVIDLT+  PV
Sbjct: 148 LGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG--YLGQKPTTVIDLTDDTPV 205

Query: 193 LLRPG 197
           ++R G
Sbjct: 206 VVREG 210


>sp|P45847|YCIO_ECOLI 23.2 KDA PROTEIN IN TRPL-BTUR INTERGENIC REGION
           Length = 206
           
 Score = 70.6 bits (170), Expect = 2e-11
 Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 6/185 (3%)

Query: 16  IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
           I  A   +R+G ++ +PT++ Y LG    D+NA++RI   +  P  +   +      +L 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76

Query: 76  VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVP-RVITGGLDTVAVRMPAHEIALKLIEL 134
             +  +   A  L K   PG  T +L  ++ VP R++     T+ +R+P++ IA  L+E 
Sbjct: 77  TYS-FVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEA 135

Query: 135 SERPIAAPSANISGKP-SPTSAHHVAEDFYGKIECIIDGGETRIGVE-STVIDLTEWPPV 192
              P+ + S  + G   + +    + +    +++ II GG   +G + +TVIDLT+  PV
Sbjct: 136 LGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG--YLGQKPTTVIDLTDDTPV 193

Query: 193 LLRPG 197
           ++R G
Sbjct: 194 VVREG 198


>gb|AAB59987.1| (U18111) ORF1 [Escherichia coli]
           Length = 183
           
 Score = 69.5 bits (167), Expect = 5e-11
 Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 6/178 (3%)

Query: 23  IREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVLAKEIP 82
           +R+G ++ +PT++ Y LG    D+NA++RI   +  P  +   +      +L   +  + 
Sbjct: 1   VRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYS-FVD 59

Query: 83  EEAEMLAKRFWPGPLTLVLPKSEVVP-RVITGGLDTVAVRMPAHEIALKLIELSERPIAA 141
             A  L K   PG  T +L  ++ VP R++     T+ +R+P++ IA  L+E    P+ +
Sbjct: 60  NVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLS 119

Query: 142 PSANISGKP-SPTSAHHVAEDFYGKIECIIDGGETRIGVE-STVIDLTEWPPVLLRPG 197
            S  + G   + +    + +    +++ II GG   +G + +TVIDLT+  PV++R G
Sbjct: 120 TSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG--YLGQKPTTVIDLTDDTPVVVREG 175


>pir||B83244 conserved hypothetical protein PA3199 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9949319|gb|AAG06587.1|AE004744_2 (AE004744)
           conserved hypothetical protein [Pseudomonas aeruginosa]
           Length = 209
           
 Score = 69.1 bits (166), Expect = 7e-11
 Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 4/184 (2%)

Query: 16  IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75
           ++ A   +R+G ++ +PT++ Y LG    ++ AV RI   +     +   +      +L 
Sbjct: 17  VKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLSELG 76

Query: 76  VLAKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVIT-GGLDTVAVRMPAHEIALKLIEL 134
           V AK +      L K   PGP T +L  +  VPR++      T+ +R+P   IA  L+E 
Sbjct: 77  VYAK-VDTGLFRLLKAHTPGPYTFILSATREVPRMLLHPKRRTIGLRVPNCPIARALLEE 135

Query: 135 SERPIAAPSANISGKPSP-TSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVL 193
              P+ + S  + G   P    + + +    +++ I+DGG    G  STVI LT+  P +
Sbjct: 136 LGEPLMSVSLIMPGSGEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISLTDTDPEV 194

Query: 194 LRPG 197
           +R G
Sbjct: 195 IRVG 198


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.139    0.397 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127493381
Number of Sequences: 2977
Number of extensions: 5602513
Number of successful extensions: 15367
Number of sequences better than 1.0e-10: 46
Number of HSP's better than  0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 15250
Number of HSP's gapped (non-prelim): 46
length of query: 340
length of database: 189,106,746
effective HSP length: 56
effective length of query: 284
effective length of database: 155,591,474
effective search space: 44187978616
effective search space used: 44187978616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)