BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1305 (cinA) DE:COMPETENCE-DAMAGE PROTEIN
(252 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UYB5|YD05_PYRAB HYPOTHETICAL PROTEIN PAB1305 >gi|7514391|pi... 500 e-141
sp|O58186|Y439_PYRHO HYPOTHETICAL PROTEIN PH0439 >gi|7520982|pir... 404 e-112
pir||S75386 hypothetical protein c04019 - Sulfolobus solfataricu... 174 1e-42
gb|AAK40459.1| Competence damage protein (cinA) [Sulfolobus solf... 174 1e-42
sp|Q9YAF9|YJ80_AERPE HYPOTHETICAL PROTEIN APE1980 148 4e-35
pir||F72500 hypothetical protein APE1980 - Aeropyrum pernix (str... 143 3e-33
emb|CAC11629.1| (AL445064) conserved hypothetical protein [Therm... 130 1e-29
sp|Q9S5X1|CINA_THEMA CINA-LIKE PROTEIN >gi|7451483|pir||E72346 h... 118 6e-26
gb|AAG19234.1| (AE005019) competence-damage protein CinA-like; D... 117 1e-25
gb|AAC09382.1| (L36131) colligrin [Streptococcus pneumoniae] >gi... 116 2e-25
sp|P54184|CINA_STRPN PUTATIVE COMPETENCE-DAMAGE PROTEIN (EXPORTE... 116 2e-25
sp|O32508|CINA_DEIRA CINA-LIKE PROTEIN >gi|7471245|pir||A75285 c... 116 2e-25
dbj|BAB06104.1| (AP001515) competence-damage inducible protein [... 116 3e-25
pir||G64995 hypothetical protein b2249 - Escherichia coli (strai... 114 9e-25
sp|P46323|CINA_BACSU PUTATIVE COMPETENCE-DAMAGE PROTEIN >gi|7451... 112 4e-24
gi|11499832 competence-damage protein, putative [Archaeoglobus f... 112 5e-24
gb|AAB47708.1| (U87792) CinA [Bacillus subtilis] 111 6e-24
pir||A82223 probable competence damage protein CinA VC1252 [impo... 97 2e-19
gi|6323832 Ymr178wp [Saccharomyces cerevisiae] >gi|2497175|sp|Q0... 97 2e-19
gb|AAD42399.1|AF157493_7 (AF157493) hypothetical competence-dama... 97 2e-19
sp|O07731|CINA_MYCTU CINA-LIKE PROTEIN >gi|7451482|pir||B70518 p... 90 2e-17
sp|Q55760|CINA_SYNY3 CINA-LIKE PROTEIN >gi|7451481|pir||S76561 h... 89 7e-17
pir||T24243 hypothetical protein R53.1 - Caenorhabditis elegans ... 89 7e-17
emb|CAB40299.1| (AL049571) hypothetical protein MLCB561.17 [Myco... 88 1e-16
sp|Q9X7D6|CINA_MYCLE CINA-LIKE PROTEIN 88 1e-16
pir||T48367 hypothetical protein F12E4.190 - Arabidopsis thalian... 72 6e-12
gb|AAG17264.1|AF218022_1 (AF218022) unknown [Homo sapiens] 71 1e-11
>sp|Q9UYB5|YD05_PYRAB HYPOTHETICAL PROTEIN PAB1305 >gi|7514391|pir||C75007
competence-damage protein PAB1305 - Pyrococcus abyssi
(strain Orsay) >gi|5459011|emb|CAB50497.1| (AJ248288)
COMPETENCE-DAMAGE PROTEIN [Pyrococcus abyssi]
Length = 252
Score = 500 bits (1273), Expect = e-141
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MKAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRK 60
MKAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRK
Sbjct: 1 MKAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRK 60
Query: 61 PDVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNE 120
PDVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNE
Sbjct: 61 PDVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNE 120
Query: 121 ARKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVLPRLGERT 180
ARKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVLPRLGERT
Sbjct: 121 ARKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVLPRLGERT 180
Query: 181 FIQKKYLAEITDESKLAPILSEAIRKFNVRIHSSPKGFGKYIGIIIFGEDEEIIEKVIEF 240
FIQKKYLAEITDESKLAPILSEAIRKFNVRIHSSPKGFGKYIGIIIFGEDEEIIEKVIEF
Sbjct: 181 FIQKKYLAEITDESKLAPILSEAIRKFNVRIHSSPKGFGKYIGIIIFGEDEEIIEKVIEF 240
Query: 241 MQSRGISFKEGW 252
MQSRGISFKEGW
Sbjct: 241 MQSRGISFKEGW 252
>sp|O58186|Y439_PYRHO HYPOTHETICAL PROTEIN PH0439 >gi|7520982|pir||H71154 probable
competence-damage protein - Pyrococcus horikoshii
>gi|3256842|dbj|BAA29525.1| (AP000002) 255aa long
hypothetical competence-damage protein [Pyrococcus
horikoshii]
Length = 255
Score = 404 bits (1027), Expect = e-112
Identities = 189/250 (75%), Positives = 227/250 (90%)
Query: 3 AEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKPD 62
AEIITVGDELLTGNTVDSNSA+IA +LTEKG+ VRRITTVGDDV+EI++ + EA+ RKP+
Sbjct: 6 AEIITVGDELLTGNTVDSNSAYIAQRLTEKGFWVRRITTVGDDVKEIENAVREAISRKPE 65
Query: 63 VLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNEAR 122
VL+ISGGLGPTHDDVTML V+ A+ R+L+LCE+CLERI++FY ELH+KGLIDDP LNEAR
Sbjct: 66 VLIISGGLGPTHDDVTMLGVANAIGRKLKLCEDCLERIKEFYEELHRKGLIDDPTLNEAR 125
Query: 123 KKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVLPRLGERTFI 182
KKMAYLP+G+ PL NTEGAAPGA++E+EG+KIF+LPGMPREMKAML +EVLPRLGER F+
Sbjct: 126 KKMAYLPEGSEPLNNTEGAAPGAYVEYEGVKIFILPGMPREMKAMLESEVLPRLGERKFV 185
Query: 183 QKKYLAEITDESKLAPILSEAIRKFNVRIHSSPKGFGKYIGIIIFGEDEEIIEKVIEFMQ 242
QKK+LAEITDESKLAPIL + I +F V+IHSSPKGFGKYIGIIIF ED+E+I KVI +++
Sbjct: 186 QKKFLAEITDESKLAPILEDTIERFKVKIHSSPKGFGKYIGIIIFAEDDEVIGKVIRYIE 245
Query: 243 SRGISFKEGW 252
+GI F+EGW
Sbjct: 246 GKGIKFREGW 255
>pir||S75386 hypothetical protein c04019 - Sulfolobus solfataricus
>gi|1707791|emb|CAA69548.1| (Y08257) orf c04019
[Sulfolobus solfataricus]
Length = 272
Score = 174 bits (436), Expect = 1e-42
Identities = 101/245 (41%), Positives = 146/245 (59%), Gaps = 15/245 (6%)
Query: 3 AEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKPD 62
AEIIT+G+E+L+G TV++N++ I +LT G+ VRRIT V D+V+EI S EA+DRKP
Sbjct: 14 AEIITIGNEVLSGKTVNTNASHIGRRLTSLGFTVRRITAVMDEVDEIASAFREAIDRKPR 73
Query: 63 VLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNEAR 122
V+V SGGLGPT DD T ++KAL LEL + + I + Y + + E R
Sbjct: 74 VIVSSGGLGPTWDDKTAEGLAKALGVNLELNKTAFDMILEKY-------MTRKIPITEER 126
Query: 123 KKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAML---LNEVLPRLGER 179
KKMAY+P GA P++N EG APG ++ H I I PG+PREM+ +L +N++L
Sbjct: 127 KKMAYMPYGAIPVENNEGIAPGIYVYHNNIDILATPGVPREMENVLENFINKMLRNRSNL 186
Query: 180 TFIQKKYLAEITDESKLAPILSEAIRKFNVRIHSSPKGFGK-----YIGIIIFGEDEEII 234
+++ E ES LAP + E ++K+++ I + PK + I I G+ EE I
Sbjct: 187 KYLEDFIYVENVMESSLAPYVKELVKKYDIYIKTHPKSYEMSHPILEIQIAGSGKQEEEI 246
Query: 235 EKVIE 239
+ IE
Sbjct: 247 KVKIE 251
>gb|AAK40459.1| Competence damage protein (cinA) [Sulfolobus solfataricus]
Length = 272
Score = 174 bits (436), Expect = 1e-42
Identities = 101/245 (41%), Positives = 146/245 (59%), Gaps = 15/245 (6%)
Query: 3 AEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKPD 62
AEIIT+G+E+L+G TV++N++ I +LT G+ VRRIT V D+V+EI S EA+DRKP
Sbjct: 14 AEIITIGNEVLSGKTVNTNASHIGRRLTSLGFTVRRITAVMDEVDEIASAFREAIDRKPR 73
Query: 63 VLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNEAR 122
V+V SGGLGPT DD T ++KAL LEL + + I + Y + + E R
Sbjct: 74 VIVSSGGLGPTWDDKTAEGLAKALGVNLELNKTAFDMILEKY-------MTRKIPITEER 126
Query: 123 KKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAML---LNEVLPRLGER 179
KKMAY+P GA P++N EG APG ++ H I I PG+PREM+ +L +N++L
Sbjct: 127 KKMAYMPYGAIPVENNEGIAPGIYVYHNNIDILATPGVPREMENVLENFINKMLRNRSNL 186
Query: 180 TFIQKKYLAEITDESKLAPILSEAIRKFNVRIHSSPKGFGK-----YIGIIIFGEDEEII 234
+++ E ES LAP + E ++K+++ I + PK + I I G+ EE I
Sbjct: 187 KYLEDFIYVENVMESSLAPYVKELVKKYDIYIKTHPKSYEMSHPILEIQIAGSGKQEEEI 246
Query: 235 EKVIE 239
+ IE
Sbjct: 247 KVKIE 251
>sp|Q9YAF9|YJ80_AERPE HYPOTHETICAL PROTEIN APE1980
Length = 268
Score = 148 bits (371), Expect = 4e-35
Identities = 96/221 (43%), Positives = 131/221 (58%), Gaps = 13/221 (5%)
Query: 2 KAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKP 61
+A II+VG+ELL G T+++N+A++ S+LT G+ V R+ TV D VE+I + AL R
Sbjct: 6 RAWIISVGNELLIGRTINTNAAWLGSRLTLLGFEVERVVTVPDRVEDIAEEVGRALGRAR 65
Query: 62 DVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNEA 121
V++ +GGLGPT+DDVT+ V+ AL R L+L LE +R+FY K+GL L E
Sbjct: 66 -VVITTGGLGPTYDDVTLQGVAMALGRGLKLHPGALEMVRRFY---SKRGL----GLTED 117
Query: 122 RKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVLPRLGE--- 178
R KMA LP GA PL+N GAAPGA +E G + LPG+P EM+AM + P L E
Sbjct: 118 RVKMAMLPDGAEPLENPVGAAPGAVVEARGSLVASLPGVPSEMEAMFEKALRPLLEEIAP 177
Query: 179 -RTFIQKKYLAEITDESKLAPILSEAIR-KFNVRIHSSPKG 217
++ ES LAP + EA R V + S P+G
Sbjct: 178 PGAVVECGIAVVGVPESSLAPYIKEASRVSPRVYVKSHPQG 218
>pir||F72500 hypothetical protein APE1980 - Aeropyrum pernix (strain K1)
>gi|5105678|dbj|BAA80990.1| (AP000063) 257aa long
hypothetical protein [Aeropyrum pernix]
Length = 257
Score = 143 bits (356), Expect = 3e-33
Identities = 92/215 (42%), Positives = 126/215 (57%), Gaps = 13/215 (6%)
Query: 8 VGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKPDVLVIS 67
+G+ELL G T+++N+A++ S+LT G+ V R+ TV D VE+I + AL R V++ +
Sbjct: 1 MGNELLIGRTINTNAAWLGSRLTLLGFEVERVVTVPDRVEDIAEEVGRALGRAR-VVITT 59
Query: 68 GGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNEARKKMAY 127
GGLGPT+DDVT+ V+ AL R L+L LE +R+FY K+GL L E R KMA
Sbjct: 60 GGLGPTYDDVTLQGVAMALGRGLKLHPGALEMVRRFY---SKRGL----GLTEDRVKMAM 112
Query: 128 LPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVLPRLGE----RTFIQ 183
LP GA PL+N GAAPGA +E G + LPG+P EM+AM + P L E ++
Sbjct: 113 LPDGAEPLENPVGAAPGAVVEARGSLVASLPGVPSEMEAMFEKALRPLLEEIAPPGAVVE 172
Query: 184 KKYLAEITDESKLAPILSEAIR-KFNVRIHSSPKG 217
ES LAP + EA R V + S P+G
Sbjct: 173 CGIAVVGVPESSLAPYIKEASRVSPRVYVKSHPQG 207
>emb|CAC11629.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 256
Score = 130 bits (324), Expect = 1e-29
Identities = 89/247 (36%), Positives = 132/247 (53%), Gaps = 23/247 (9%)
Query: 3 AEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKPD 62
A +ITVG+E+L G TV++N+AFI + LT GY VRR V DD++EI AL+ D
Sbjct: 4 ASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALE-VSD 62
Query: 63 VLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNEAR 122
++V SGGLGPT DD+T+ +K + ++L + E+ L I+K Y +L R
Sbjct: 63 LVVSSGGLGPTFDDMTVEGFAKCIGQDLRIDEDALAMIKKKY---------GQADLTPQR 113
Query: 123 KKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREM----KAMLLNEVLPRLGE 178
KMA +P P++N G APG G K+ +LPG+P+EM KAM + ++P +
Sbjct: 114 LKMAKIPPSCRPIENPVGTAPGLICAVGGKKVIILPGVPKEMEALLKAMEKDIIIP---D 170
Query: 179 RTFIQKKYLAEITDESKLAPILSEAIRKFN-VRIHSSP-----KGFGKYIGIIIFGEDEE 232
+ + ES AP + +++F+ + + S P K I I FGEDE
Sbjct: 171 THYYDDSVIIADVMESAFAPYVDRIMKEFDGIYVKSHPRNVEVKNPELEIEISGFGEDEA 230
Query: 233 IIEKVIE 239
+ K IE
Sbjct: 231 ALRKKIE 237
>sp|Q9S5X1|CINA_THEMA CINA-LIKE PROTEIN >gi|7451483|pir||E72346 hypothetical protein
TM0703 - Thermotoga maritima (strain MSB8)
>gi|4981226|gb|AAD35785.1|AE001741_18 (AE001741)
competence-damage inducible protein, putative
[Thermotoga maritima]
Length = 408
Score = 118 bits (293), Expect = 6e-26
Identities = 68/170 (40%), Positives = 104/170 (61%), Gaps = 16/170 (9%)
Query: 2 KAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDV----EEIKSIILEAL 57
KA IIT+G ELL G ++ N+ F+ +L GY V +++TVGDD+ EE+K+++L
Sbjct: 3 KAAIITIGSELLEGLILNKNAQFLCQELKNLGYRVVKVSTVGDDLISISEEVKTLLL--- 59
Query: 58 DRKPDVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPE 117
K D+L+++GGLGPT DD+T AV+K LNR L+L EE L +I++ + H E
Sbjct: 60 --KVDLLILTGGLGPTQDDLTRDAVAKVLNRSLKLNEELLSKIKEKIKKYHS-------E 110
Query: 118 LNEARKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAM 167
+ + ++ A + GA L N G+APG + +G + +LPG PRE+ M
Sbjct: 111 IPQNIERQALVIDGAEVLDNPVGSAPGQLLTVDGKIVILLPGPPRELIPM 160
>gb|AAG19234.1| (AE005019) competence-damage protein CinA-like; Dip3 [Halobacterium
sp. NRC-1]
Length = 231
Score = 117 bits (290), Expect = 1e-25
Identities = 76/244 (31%), Positives = 129/244 (52%), Gaps = 20/244 (8%)
Query: 1 MKAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRK 60
M+ ++TVGDELL G+TV++N+A++ +L E+G V R + D+V I++ + AL +
Sbjct: 1 MQVALVTVGDELLAGDTVNTNAAWLGQQLHERGATVARTIVIPDEVATIQADV-AALSER 59
Query: 61 PDVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNE 120
D ++++GG+GPTHDDVTM AV+ A +REL + + Y + H D +
Sbjct: 60 YDAVIVTGGVGPTHDDVTMDAVASAFDRELTEHADAVA-----YFQRH-----DTYSAAD 109
Query: 121 ARKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVLPRLGERT 180
+LP GA L+N G APGA + + ++VLPG+P EMK M GE+
Sbjct: 110 LTTGTTHLPAGARLLENPRGVAPGAAVNN----VYVLPGVPDEMKGMFETVADEFTGEQV 165
Query: 181 FIQKKYLAEITDESKLAPILSEAIRKFNVRIHSSPKGFGKYIGIIIFGEDEEIIEKVIEF 240
+ ++ ++ ES L ++ ++V + S P G + + I D + + ++
Sbjct: 166 YTEE--VSVDAPESALIDTIAALQEAYDVTVGSYP---GDRVRVKIQHSDADTVRAAADW 220
Query: 241 MQSR 244
+ R
Sbjct: 221 FRDR 224
>gb|AAC09382.1| (L36131) colligrin [Streptococcus pneumoniae]
>gi|1093015|prf||2102309A exp10 gene [Streptococcus
pneumoniae]
Length = 418
Score = 116 bits (288), Expect = 2e-25
Identities = 73/205 (35%), Positives = 115/205 (55%), Gaps = 8/205 (3%)
Query: 1 MKAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRK 60
MKAEII VG E+LTG V++N+ F++ KL E G V T VGD+ + S+ LE ++
Sbjct: 1 MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEVRLLSL-LEIASQR 59
Query: 61 PDVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNE 120
+++++GGLG T DD+T ++K L + L + E++ F+ L D
Sbjct: 60 SSLVILTGGLGATEDDLTKQTLAKFLGKALVFDPQAQEKLDIFFA------LRPDYARTP 113
Query: 121 ARKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVLPRLGERT 180
++ A + +GA PL N G A G +E +G+ VLPG P E+K M+LN++LP+L +
Sbjct: 114 NNERQAQIVEGAIPLPNETGLAVGGKLEVDGVTYVVLPGPPSELKPMVLNQLLPKLMTGS 173
Query: 181 FIQKKYLAEI-TDESKLAPILSEAI 204
+ + L ES+L IL++ I
Sbjct: 174 KLYSRVLRFFGIGESQLVTILADLI 198
>sp|P54184|CINA_STRPN PUTATIVE COMPETENCE-DAMAGE PROTEIN (EXPORTED PROTEIN 10)
>gi|995565|emb|CAA84071.1| (Z34303) CinA protein
[Streptococcus pneumoniae]
Length = 418
Score = 116 bits (288), Expect = 2e-25
Identities = 73/205 (35%), Positives = 115/205 (55%), Gaps = 8/205 (3%)
Query: 1 MKAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRK 60
MKAEII VG E+LTG V++N+ F++ KL E G V T VGD+ + S+ LE ++
Sbjct: 1 MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEVRLLSL-LEIASQR 59
Query: 61 PDVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNE 120
+++++GGLG T DD+T ++K L + L + E++ F+ L D
Sbjct: 60 SSLVILTGGLGATEDDLTKQTLAKFLGKALVFDPQAQEKLDIFFA------LRPDYARTP 113
Query: 121 ARKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVLPRLGERT 180
++ A + +GA PL N G A G +E +G+ VLPG P E+K M+LN++LP+L +
Sbjct: 114 NNERQAQIVEGAIPLPNETGLAVGGKLEVDGVTYVVLPGPPSELKPMVLNQLLPKLMTGS 173
Query: 181 FIQKKYLAEI-TDESKLAPILSEAI 204
+ + L ES+L IL++ I
Sbjct: 174 KLYSRVLRFFGIGESQLVTILADLI 198
>sp|O32508|CINA_DEIRA CINA-LIKE PROTEIN >gi|7471245|pir||A75285 cinA protein -
Deinococcus radiodurans (strain R1)
>gi|2251087|dbj|BAA21328.1| (AB005471) CinA [Deinococcus
radiodurans] >gi|6460151|gb|AAF11885.1|AE002065_2
(AE002065) cinA protein [Deinococcus radiodurans]
Length = 404
Score = 116 bits (288), Expect = 2e-25
Identities = 81/212 (38%), Positives = 113/212 (53%), Gaps = 14/212 (6%)
Query: 3 AEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKPD 62
AEII+VG ELL G VDSN+AF+A +L E+G + R T +GD++ + + AL R D
Sbjct: 4 AEIISVGTELLFGEIVDSNAAFLARELGERGVTLHRKTVLGDNLGRVSEGLALALSR-AD 62
Query: 63 VLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNEAR 122
++++ GGLGPT DD+T A++ + E L +R Y +G + + E
Sbjct: 63 LVIVGGGLGPTDDDLTREAIAAVMQETPAEDPELLAWLRGLY---EARGRV----MPEVN 115
Query: 123 KKMAYLPKGATPLQNTEGAAPGAFIE---HEGIKIFV-LPGMPREMKAMLLNEVLPR--L 176
+K A+L A L N G APG F+ +G KI V LPG PREM M +VLPR L
Sbjct: 116 RKQAWLIPSAEALPNPVGTAPGWFVRRQTEQGEKIIVALPGPPREMHKMWREQVLPRLPL 175
Query: 177 GERTFIQKKYLAEITDESKLAPILSEAIRKFN 208
R + + ES +A IL E R+ N
Sbjct: 176 PGRALVHTTIHTQGIGESNVAEILGELTRQAN 207
>dbj|BAB06104.1| (AP001515) competence-damage inducible protein [Bacillus
halodurans]
Length = 420
Score = 116 bits (287), Expect = 3e-25
Identities = 84/280 (30%), Positives = 139/280 (49%), Gaps = 41/280 (14%)
Query: 1 MKAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRK 60
MKAE+I VG ELL G ++N F++ +L + G V + VGD+ ++ LE +
Sbjct: 1 MKAEVIAVGSELLLGQIANTNGQFLSQQLAKAGVDVFYHSVVGDNATRLQET-LEIASER 59
Query: 61 PDVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNE 120
++++++GGLGPT DD+T V+ L++EL + E LE+I F+ K+ L + E
Sbjct: 60 SELIILTGGLGPTKDDLTKEVVASFLHKELVIDEVALEQIVSFF---EKRNL----PMTE 112
Query: 121 ARKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVLP----RL 176
+K A + K AT QN G APG H+G+ +LPG PREM+ M+ +V+P +
Sbjct: 113 NNRKQALVLKEATIFQNHYGMAPGMATIHQGVTYVLLPGPPREMRPMVTEQVIPFLSSHV 172
Query: 177 GERTFI----------QKKYLAEITD------ESKLAPILS--EAIRKFNVRIH------ 212
G+ I + K E+ D +AP+ S E + V+ H
Sbjct: 173 GDLQIISRVLRFFGIGESKLETELEDLIDGQSNPTIAPLASEGEVTLRLTVKHHDETQAA 232
Query: 213 ----SSPKGFGKYIGIIIFGEDE-EIIEKVIEFMQSRGIS 247
+ + + +G +G DE ++EK++ + G+S
Sbjct: 233 LLLDETERKIRERVGHYFYGYDETSLMEKLVSCLTKTGLS 272
>pir||G64995 hypothetical protein b2249 - Escherichia coli (strain K-12)
>gi|1788583|gb|AAC75309.1| (AE000315) orf, hypothetical
protein [Escherichia coli K12]
>gi|1799602|dbj|BAA16073.1| (D90856) PUTATIVE
COMPETENCE-DAMAGE PROTEIN. [Escherichia coli]
Length = 400
Score = 114 bits (283), Expect = 9e-25
Identities = 64/179 (35%), Positives = 107/179 (59%), Gaps = 8/179 (4%)
Query: 1 MKAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRK 60
+K E+++ GDE+L G VD+N+A++A +G + R TVGD+++++ +I+ E +
Sbjct: 2 LKVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDDLVTILRER-SQH 60
Query: 61 PDVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNE 120
DVL+++GGLGPT DD++ LA + A L L E L+ + +++ H++G + P
Sbjct: 61 ADVLIVNGGLGPTSDDLSALAAATAKGEGLVLHEAWLKEMERYF---HERGRVMAP---- 113
Query: 121 ARKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVLPRLGER 179
+ +K A LP A + N G A G ++ +F PG+P E K M+ +E+LPRL ER
Sbjct: 114 SNRKQAELPASAEFINNPVGTACGFAVQLNRCLMFFTPGVPSEFKVMVEHEILPRLRER 172
>sp|P46323|CINA_BACSU PUTATIVE COMPETENCE-DAMAGE PROTEIN >gi|7451480|pir||E69599
competence-damage inducible protein cinA - Bacillus
subtilis >gi|1314847|gb|AAB00568.1| (U56238) CinA
[Bacillus subtilis] >gi|2634065|emb|CAB13566.1| (Z99112)
competence-damage inducible protein [Bacillus subtilis]
Length = 416
Score = 112 bits (278), Expect = 4e-24
Identities = 73/208 (35%), Positives = 108/208 (51%), Gaps = 13/208 (6%)
Query: 2 KAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKP 61
KAEII VG ELL G ++N+ FI+ +L E G V T VGD+ E +K +I A +R
Sbjct: 6 KAEIIAVGSELLLGQIANTNAQFISKQLAEIGVHVFYHTAVGDNPERLKQVIRIAEERS- 64
Query: 62 DVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNEA 121
D ++ SGGLGPT DD+T ++ L R L L +E + I + + ++
Sbjct: 65 DFIIFSGGLGPTKDDLTKETIANTLGRPLVLNDEAFQSIEDYPKRTKR-------TMSPN 117
Query: 122 RKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVLPRLGERTF 181
+K A + +G+ L N G APG EHE +LPG P E++ M NE P L ++
Sbjct: 118 NRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSELRPMFENEAKPLLLKKMG 177
Query: 182 IQKKYLAEI-----TDESKLAPILSEAI 204
+K ++ + ES+L P L + I
Sbjct: 178 SNEKIVSTVLRFFGIGESQLEPDLEDII 205
>gi|11499832 competence-damage protein, putative [Archaeoglobus fulgidus]
>gi|9789821|sp|O28033|YM51_ARCFU HYPOTHETICAL PROTEIN
AF2251 >gi|7482956|pir||C69531 competence-damage protein
homolog - Archaeoglobus fulgidus
>gi|2648274|gb|AAB89006.1| (AE000949) competence-damage
protein, putative [Archaeoglobus fulgidus]
Length = 229
Score = 112 bits (277), Expect = 5e-24
Identities = 77/244 (31%), Positives = 138/244 (56%), Gaps = 30/244 (12%)
Query: 1 MKAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRK 60
M+ II+VG+E+L+G+ ++N+A++A KLT G+ V++I T+ DDV I + +A ++
Sbjct: 1 MEFIIISVGNEILSGDITNTNAAYMAKKLTRAGHKVKKIITIPDDVNIIAEEVRKA-SKE 59
Query: 61 PDVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNE 120
D ++++GGLG THDDVT +++A NR+L + +E E + K + E
Sbjct: 60 ADFVLVTGGLGATHDDVTAEGIARAFNRKLVISKEVYEWLSKL------------SKNEE 107
Query: 121 ARKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVLPRLGERT 180
A +K++ +P+G+ + N GAAP +E+ + V+PG+P EM+ ++L R
Sbjct: 108 AVRKISSVPEGSEIVWNDVGAAPAFIVEN----VAVMPGVPAEME-NTFEKILER----- 157
Query: 181 FIQKKYLAEITD----ESKLAPILSEAIR-KFNVRIHSSPKGFGKYIGIIIFGEDEEIIE 235
F + +Y E+ E K+ L++ +R +V I S PK Y+ + G D+E ++
Sbjct: 158 FEKGEYHEEVVKVNGFEVKIVDKLNQVVRDNPDVEIGSYPK--PGYVMVKFSGRDKEKVK 215
Query: 236 KVIE 239
K ++
Sbjct: 216 KAVK 219
>gb|AAB47708.1| (U87792) CinA [Bacillus subtilis]
Length = 416
Score = 111 bits (276), Expect = 6e-24
Identities = 67/189 (35%), Positives = 101/189 (52%), Gaps = 8/189 (4%)
Query: 2 KAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKP 61
KAEII VG ELL G ++N+ FI+ +L E G V T VGD+ E +K +I A +R
Sbjct: 6 KAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERS- 64
Query: 62 DVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNEA 121
D ++ SGGLGPT DD+T ++ L R L L +E + I ++ + ++
Sbjct: 65 DFIIFSGGLGPTKDDLTKETIANTLGRPLVLNDEAFQSIEDYFKRTKR-------TMSPN 117
Query: 122 RKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVLPRLGERTF 181
+K A + +G+ L N G APG EHE +LPG P E++ M NE P L ++
Sbjct: 118 NRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSELRPMFENEAKPLLLKKMG 177
Query: 182 IQKKYLAEI 190
+K ++ +
Sbjct: 178 SNEKIVSTV 186
>pir||A82223 probable competence damage protein CinA VC1252 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655735|gb|AAF94411.1| (AE004204) competence damage
protein CinA, putative [Vibrio cholerae]
Length = 415
Score = 97.1 bits (238), Expect = 2e-19
Identities = 63/241 (26%), Positives = 125/241 (51%), Gaps = 23/241 (9%)
Query: 1 MKAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRK 60
+K +++ G+E+L G+ VDSN+A++A + + G+ + + TVGD + + ++ L
Sbjct: 5 LKIAMLSTGEEVLHGDIVDSNAAWLAREFYQHGFSLAKRATVGDSLPALVEELM-MLSFN 63
Query: 61 PDVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNE 120
DV++++GGLGPT DD+T A ++A + L L + L ++ F++ + + E
Sbjct: 64 SDVVIVNGGLGPTSDDITAQAAAQAAEQPLVLNADWLSQLEAFFIGRGR-------AMPE 116
Query: 121 ARKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVLPRLGERT 180
+ +K A LP A + N G A G ++ + PG+P+E M+ ++LP L +R
Sbjct: 117 SNRKQAMLPANAEVIDNPIGTACGFKMQINDCWFYFTPGVPKEFYKMVSEQILPNL-QRQ 175
Query: 181 F--IQKKYLAEITDESKLAPILSEAIRKFNVRIHSSPKGFG-------KYIGIIIFGEDE 231
F +Q + + + +S+ + K ++ P+G+ +I + +FG D+
Sbjct: 176 FPSVQGQQCSRLYTFGTSESSISDKLDKMHL-----PEGYTLGYRSYLPFIEVKLFGPDQ 230
Query: 232 E 232
+
Sbjct: 231 D 231
>gi|6323832 Ymr178wp [Saccharomyces cerevisiae]
>gi|2497175|sp|Q03219|YM44_YEAST HYPOTHETICAL 31.1 KD
PROTEIN IN SIP18-SPT21 INTERGENIC REGION
>gi|1078525|pir||S55125 hypothetical protein YMR178w -
yeast (Saccharomyces cerevisiae)
>gi|854448|emb|CAA89911.1| (Z49808) unknown
[Saccharomyces cerevisiae]
Length = 274
Score = 96.7 bits (237), Expect = 2e-19
Identities = 84/273 (30%), Positives = 133/273 (47%), Gaps = 44/273 (16%)
Query: 3 AEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKPD 62
A I +GDE+L G VD+NS F A + G ++ I T+GDD +I + L + D
Sbjct: 6 AACIIIGDEVLNGKVVDTNSTFFAKYCFDHGIQLKEIATIGDDETQIVDTV-RRLVKNYD 64
Query: 63 VLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELN--- 119
++ +GG+GPTHDD+T ++K+ N EL EEC ER+R HK DPE
Sbjct: 65 FIISTGGIGPTHDDITYECMAKSFNLPCELDEECKERMR------HK----SDPEARLDA 114
Query: 120 ---EARKKMAYLPKGATPLQN----TEGAAPGAFIEHEGIKIFVLPGMPREMKAML---- 168
+A +MA +PKG T ++N + P I H K+++LPG+P+ ML
Sbjct: 115 DALKAHYQMATMPKG-TNVKNYYVCDDLWVPICSISH---KMYILPGIPQLFARMLKAFT 170
Query: 169 --LNEVL-----PRLGERTFIQKKYLAEITDESKLAPILSEAIRKFN-VRIHSSPKGFGK 220
L ++ PR R F+ + +L E +L I E+ + ++I S P
Sbjct: 171 PTLKKIYNLDKDPREYVRYFV-RTHLTESQISKELKLIQDESTKVSEAIKIGSYPHFGMG 229
Query: 221 YIGIIIFGEDEE------IIEKVIEFMQSRGIS 247
+ + I GE ++ I+ +V+ ++ IS
Sbjct: 230 FNTVSILGEKKDDSYLKSIVNRVVNNLEGEVIS 262
>gb|AAD42399.1|AF157493_7 (AF157493) hypothetical competence-damage protein [Zymomonas
mobilis]
Length = 253
Score = 96.7 bits (237), Expect = 2e-19
Identities = 77/248 (31%), Positives = 127/248 (51%), Gaps = 23/248 (9%)
Query: 3 AEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKPD 62
A ++ +GDE+L+G T D N A IAS L +G + + + DD + I +L AL D
Sbjct: 10 AALLVIGDEILSGRTEDRNIAQIASWLNMQGIRLAEVRVIPDDSQAIGEAVL-ALKDNHD 68
Query: 63 VLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNEAR 122
L +GG+GPTHDD+T+ ++S+AL + + E + +Y D + AR
Sbjct: 69 YLFTTGGIGPTHDDITVESISQALRLPVIIHPEAKACLDAYYA--------DRGGVTPAR 120
Query: 123 KKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAML--LNEVLPRLGERT 180
+MA P+GAT ++N APG I + IF++ G+P+ + AML LN L G +
Sbjct: 121 LRMARTPEGATLIKNPVSGAPGVRIGN----IFIMAGVPKIVTAMLESLNGTLS--GGKP 174
Query: 181 FIQKKYLAEITDESKLAPILSEAIRKFNV-RIHSSP---KGFGKYIGIIIFGEDEEIIEK 236
+ + + ES++A IL E + + ++ S P G G + ++I D E + +
Sbjct: 175 VLSRT-VGSWNGESQIAKILQETEKDHALCKLGSYPFFRNGSGG-VNLVIRSVDREALNR 232
Query: 237 VIEFMQSR 244
E + +R
Sbjct: 233 CAEDLINR 240
>sp|O07731|CINA_MYCTU CINA-LIKE PROTEIN >gi|7451482|pir||B70518 probable cinA -
Mycobacterium tuberculosis (strain H37RV)
>gi|2225959|emb|CAB10034.1| (Z97193) cinA [Mycobacterium
tuberculosis]
Length = 430
Score = 90.5 bits (221), Expect = 2e-17
Identities = 69/212 (32%), Positives = 105/212 (48%), Gaps = 12/212 (5%)
Query: 2 KAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKP 61
+A I+ G E+LTG D N +IA +L E G + IT GD +I++ + ++
Sbjct: 6 RAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGV 65
Query: 62 DVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDP----E 117
D++V SGGLGPT DD+T+ V++ REL L +E RI +L + +P
Sbjct: 66 DLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDS 125
Query: 118 LNEARKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREM-----KAMLLNEV 172
+ A +K A +P G+ + + G APG + + VLPG PRE+ KA+ V
Sbjct: 126 IRAANRKQAMIPAGSQVI-DPVGTAPGLVVPGRP-AVMVLPGPPRELQPIWSKAIQTAPV 183
Query: 173 LPRL-GERTFIQKKYLAEITDESKLAPILSEA 203
+ G T+ Q+ ES LA L +A
Sbjct: 184 QDAIAGRTTYRQETIRIFGLPESSLADTLRDA 215
>sp|Q55760|CINA_SYNY3 CINA-LIKE PROTEIN >gi|7451481|pir||S76561 hypothetical protein -
Synechocystis sp. (strain PCC 6803)
>gi|1001672|dbj|BAA10407.1| (D64002) hypothetical
protein [Synechocystis sp.]
Length = 416
Score = 88.5 bits (216), Expect = 7e-17
Identities = 84/279 (30%), Positives = 122/279 (43%), Gaps = 42/279 (15%)
Query: 1 MKAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRK 60
M AEII VG ELL G ++SNS ++A +L G T VGD+ E IK I A +R
Sbjct: 1 MAAEIICVGTELLLGEILNSNSQYLAQELARLGIPHYFQTVVGDNPERIKRAIAIARER- 59
Query: 61 PDVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNE 120
+L+ +GGLGPT DD+T ++ L+ E I ++ K +
Sbjct: 60 AQILIFTGGLGPTPDDLTTETIADFFRTPLQ------ENI-AVIADIEAKFAQTGRPMAA 112
Query: 121 ARKKMAYLPKGATPLQNTEGAAPGAFIEHE-GIKIFVLPGMPREMKAMLLNEVLPRL--- 176
+K A LP GA L N G APG + + I PG+P EM+ M +P L
Sbjct: 113 NNRKQALLPLGAELLANATGTAPGMIWHPQPDLLILTFPGVPSEMRQMWQGVAVPYLQSQ 172
Query: 177 --GERTF---------IQKKYLAE-ITD-----ESKLAPILSEAIRKFNVRIHSSPKGFG 219
G+ T I + LAE +TD +AP + + + +S +
Sbjct: 173 GWGKTTIYSRVLRFQGIGESALAEKVTDFFTLTNPTVAPYAGKGEVRLRISCPASSEALA 232
Query: 220 KYI------------GIIIFGEDEEIIEKVI-EFMQSRG 245
K I G+ FG+DE+ I V+ ++ RG
Sbjct: 233 KEIIDPIAEEIKAIAGLDYFGQDEDTIASVVGALLRERG 271
>pir||T24243 hypothetical protein R53.1 - Caenorhabditis elegans
>gi|3879167|emb|CAA91346.1| (Z66515) contains similarity
to Pfam domain: PF01507 (Phosphoadenosine phosphosulfate
reductase family), Score=219.9, E-value=1.2e-62,
N=1~cDNA EST yk313h1.5 comes from this gene~cDNA EST
yk457a9.3 comes from this gene~cDNA EST yk457a9.5 comes
from thi>
Length = 519
Score = 88.5 bits (216), Expect = 7e-17
Identities = 70/251 (27%), Positives = 123/251 (48%), Gaps = 16/251 (6%)
Query: 3 AEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKPD 62
A I+ +GDE+L G T D+NS F+ +L + G +R+I+ +GDD+ EI S +++ D
Sbjct: 16 AAILVIGDEILKGTTRDTNSHFLCKRLHKLGVNIRKISVIGDDISEI-SREVQSASGAYD 74
Query: 63 VLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLID------DP 116
++ SGG+GPTHDD T L ++ A +++ +E + + +F K + +
Sbjct: 75 YVITSGGVGPTHDDKTYLGLAHAFTDQMQFSDEIRQAVNRFLPTYTAKKRAEGVGEGLEE 134
Query: 117 ELNEARKKMAYLPKGATPLQNTE--GAAPGAFIEHEGIKIFVLPGMPR--EMKAMLLNEV 172
+ A +K+ +PK + L T+ + F + LPG+P+ E L +
Sbjct: 135 AVRLATEKLCTIPKMSQLLWGTQKINGSLSTFPVVRISNVVALPGVPKFCERAFDELQDQ 194
Query: 173 LPRLGERTFIQKKYLAEITDESKLAPILSEAIRKF---NVRIHSSPKGFGKYI--GIIIF 227
L + ER + + L DE + L++ +F NV+I S P+ K+ + I
Sbjct: 195 LFPIEERQSLCFETLYTDLDEFDFSKKLTDLAAQFEDRNVQIGSYPELKNKFFKTKLTIE 254
Query: 228 GEDEEIIEKVI 238
E E +E V+
Sbjct: 255 TESSETMEAVV 265
>emb|CAB40299.1| (AL049571) hypothetical protein MLCB561.17 [Mycobacterium leprae]
Length = 432
Score = 87.8 bits (214), Expect = 1e-16
Identities = 67/209 (32%), Positives = 105/209 (50%), Gaps = 9/209 (4%)
Query: 2 KAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKP 61
+A I+ G E+LTG D N ++A +L E G + IT GD +I++ + +
Sbjct: 10 RAGIVVTGTEILTGRVRDRNGPWLADRLLELGVKLAHITICGDCPADIEAQLRFMAEAGV 69
Query: 62 DVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPE-LNE 120
D++V SGGLGPT DD+T+ V++ NRE+ L E +I L + D E +
Sbjct: 70 DLIVTSGGLGPTADDMTVEVVARFCNREMVLDVELENKIAAILNSLMTRFNPGDFEAVRA 129
Query: 121 ARKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVL-----PR 175
A +K A +P G+ L + G APG + + + VLPG P E++ M V+
Sbjct: 130 ANRKQAMIPAGSQVL-DPIGTAPGLVVPGKP-TVMVLPGPPSELQPMWRRAVMTAATREA 187
Query: 176 LGERTFIQKKYLAEI-TDESKLAPILSEA 203
+ +RT +++ L ES LA L +A
Sbjct: 188 IADRTIYRQQTLRMFGLSESGLAETLRDA 216
>sp|Q9X7D6|CINA_MYCLE CINA-LIKE PROTEIN
Length = 428
Score = 87.8 bits (214), Expect = 1e-16
Identities = 67/209 (32%), Positives = 105/209 (50%), Gaps = 9/209 (4%)
Query: 2 KAEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKP 61
+A I+ G E+LTG D N ++A +L E G + IT GD +I++ + +
Sbjct: 6 RAGIVVTGTEILTGRVRDRNGPWLADRLLELGVKLAHITICGDCPADIEAQLRFMAEAGV 65
Query: 62 DVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPE-LNE 120
D++V SGGLGPT DD+T+ V++ NRE+ L E +I L + D E +
Sbjct: 66 DLIVTSGGLGPTADDMTVEVVARFCNREMVLDVELENKIAAILNSLMTRFNPGDFEAVRA 125
Query: 121 ARKKMAYLPKGATPLQNTEGAAPGAFIEHEGIKIFVLPGMPREMKAMLLNEVL-----PR 175
A +K A +P G+ L + G APG + + + VLPG P E++ M V+
Sbjct: 126 ANRKQAMIPAGSQVL-DPIGTAPGLVVPGKP-TVMVLPGPPSELQPMWRRAVMTAATREA 183
Query: 176 LGERTFIQKKYLAEI-TDESKLAPILSEA 203
+ +RT +++ L ES LA L +A
Sbjct: 184 IADRTIYRQQTLRMFGLSESGLAETLRDA 212
>pir||T48367 hypothetical protein F12E4.190 - Arabidopsis thaliana
>gi|7378626|emb|CAB83302.1| (AL162751) putative protein
[Arabidopsis thaliana]
Length = 497
Score = 72.2 bits (174), Expect = 6e-12
Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 17/140 (12%)
Query: 3 AEIITVGDELLTGNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRK-- 60
A +I VGDE+L+G D + KLT G+ V++ T + +D++ + E +DR+
Sbjct: 255 ASVIAVGDEILSGTVEDQLGLSLCKKLTSVGWSVQQTTVLRNDIDSVS----EEVDRQRS 310
Query: 61 -PDVLVISGGLGPTHDDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELN 119
D++ I GG+GP H DVT+ V+KA L EE E +R LI D +
Sbjct: 311 TSDMVFIYGGVGPLHSDVTLAGVAKAFGVRLAPDEEFEEYLRH---------LISD-QCT 360
Query: 120 EARKKMAYLPKGATPLQNTE 139
R +MA LP+G T L + E
Sbjct: 361 GDRNEMAQLPEGITELLHHE 380
>gb|AAG17264.1|AF218022_1 (AF218022) unknown [Homo sapiens]
Length = 294
Score = 71.0 bits (171), Expect = 1e-11
Identities = 67/243 (27%), Positives = 113/243 (45%), Gaps = 35/243 (14%)
Query: 15 GNTVDSNSAFIASKLTEKGYLVRRITTVGDDVEEIKSIILEALDRKPDVLVISGGLGPTH 74
G+T D+N+ F+ L G V R++ V D+V I + + +R VL +GG+GPTH
Sbjct: 26 GHTQDTNTFFLCRTLRSLGVQVCRVSVVPDEVATIAAEVTSFSNRFTHVLT-AGGIGPTH 84
Query: 75 DDVTMLAVSKALNRELELCEECLERIRKFYVELHKKGLIDDPELNEARKKMAYLPKGATP 134
DDVT AV++A EL+ + +E K L E +K++ +P A
Sbjct: 85 DDVTFEAVAQAFGDELKPHPK---------LEAATKAL-----GGEGWEKLSLVPSSARL 130
Query: 135 LQNTEGAA--PGAFIEHEGIKIFVLPGMPREMKAMLLNEVLPRLGERTFIQ--KKYLAEI 190
T+ P F +++ PG+P ++ +L E + L + +Q K L
Sbjct: 131 HYGTDPCTGQPFRFPLVSVRNVYLFPGIPELLRRVL--EGMKGLFQNPAVQFHSKELYVA 188
Query: 191 TDESKLAPILSEAIRKFNVRIHSSPKGFGKY---------IGIIIFGEDEEIIEKVIEFM 241
DE+ +APIL+EA F R+ G G Y + + + E+E +E+ + ++
Sbjct: 189 ADEASIAPILAEAQAHFGRRL-----GLGSYPDWGSNYYQVKLTLDSEEEGPLEECLAYL 243
Query: 242 QSR 244
+R
Sbjct: 244 TAR 246
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.388
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89732128
Number of Sequences: 2977
Number of extensions: 3634366
Number of successful extensions: 11291
Number of sequences better than 1.0e-10: 27
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 11235
Number of HSP's gapped (non-prelim): 29
length of query: 252
length of database: 189,106,746
effective HSP length: 57
effective length of query: 195
effective length of database: 154,992,987
effective search space: 30223632465
effective search space used: 30223632465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)