BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1308 (PAB1308) DE:METHYL-ACCEPTING CHEMOTAXIS RELATED
PROTEIN
(435 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75006 methyl-accepting chemotaxis related protein PAB1308 ... 815 0.0
pir||D71155 probable methyl-accepting chemotaxis protein - Pyroc... 678 0.0
pir||H75001 methyl-accepting chemotaxis protein (tlpc) PAB1336 -... 321 1e-86
pir||F71161 probable chemotaxis protein - Pyrococcus horikoshii ... 319 3e-86
pir||F71197 probable methyl-accepting chemotaxis protein - Pyroc... 292 4e-78
pir||B75158 sensory rhodopsin II transducer (htr-ii) (methyl-acc... 289 4e-77
pir||A72254 methyl-accepting chemotaxis protein - Thermotoga mar... 189 5e-47
dbj|BAA75352.1| (AB011838) metyl-accepting chemotaxis protein [B... 183 4e-45
dbj|BAB07634.1| (AP001520) methyl-accepting chemotaxis protein [... 182 8e-45
dbj|BAB07487.1| (AP001519) methyl-accepting chemotaxis protein [... 177 2e-43
sp|P39214|MCPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPA (H... 172 7e-42
pir||F72288 methyl-accepting chemotaxis protein - Thermotoga mar... 172 7e-42
dbj|BAB04595.1| (AP001510) methyl-accepting chemotaxis protein [... 171 1e-41
gi|11498650 methyl-accepting chemotaxis protein (tlpC-2) [Archae... 171 2e-41
dbj|BAB07622.1| (AP001520) methyl-accepting chemotaxis protein [... 169 4e-41
sp|Q48318|HTR5_HALSA HALOBACTERIAL TRANSDUCER PROTEIN V >gi|1127... 169 5e-41
gi|11498639 methyl-accepting chemotaxis protein (tlpC-1) [Archae... 168 8e-41
gb|AAG19968.1| (AE005078) Htr17 transducer; Htr17 [Halobacterium... 168 1e-40
sp|P42259|HTR2_NATPH SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (M... 166 5e-40
dbj|BAB07619.1| (AP001520) methyl-accepting chemotaxis protein [... 166 5e-40
pir||T44989 transducer protein trII [imported] - Haloarcula vall... 164 1e-39
sp|P42258|HTR2_HALVA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (M... 164 1e-39
gb|AAG19270.1| (AE005023) Htr18 transducer; Htr18 [Halobacterium... 163 4e-39
sp|P39216|TLPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPA >g... 162 6e-39
pir||T44938 transducer protein htpV [similarity] - Halobacterium... 161 1e-38
sp|P39217|TLPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPB >g... 161 1e-38
pir||A72428 methyl-accepting chemotaxis protein - Thermotoga mar... 159 7e-38
pir||C72291 methyl-accepting chemotaxis protein - Thermotoga mar... 158 1e-37
pir||E72379 methyl-accepting chemotaxis protein - Thermotoga mar... 157 2e-37
gb|AAG18922.1| (AE004994) Htr14 transducer; Htr14 [Halobacterium... 157 2e-37
pir||G72316 methyl-accepting chemotaxis protein - Thermotoga mar... 157 3e-37
sp|Q48317|HTR4_HALSA HALOBACTERIAL TRANSDUCER PROTEIN IV >gi|112... 157 3e-37
gb|AAG19986.1| (AE005080) Htr5 transducer; Htr5 [Halobacterium s... 156 4e-37
sp|P39215|MCPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB (H... 156 4e-37
gb|AAG19122.1| (AE005010) Htr16 transducer; Htr16 [Halobacterium... 156 5e-37
gb|AAC27628.1| (AF076485) defective in fruiting DifA [Myxococcus... 155 1e-36
pir||A54078 methyl-accepting chemotaxis protein mcpB - Bacillus ... 154 1e-36
pir||H75002 methyl-accepting chemotaxis protein PAB1026 - Pyroco... 154 2e-36
pir||T48840 transducer protein basT [validated] - Halobacterium ... 154 2e-36
gb|AAG20060.1| (AE005085) Htr3 transducer; Htr3 [Halobacterium s... 154 2e-36
dbj|BAB05546.1| (AP001513) methyl-accepting chemotaxis protein [... 153 2e-36
gb|AAG19257.1| (AE005021) Htr6 transducer; Htr6 [Halobacterium s... 153 3e-36
gb|AAB17882.1| (U75437) transducer HtC protein [Halobacterium sa... 150 2e-35
gb|AAG19812.1| (AE005065) Htr8 transducer; Htr8 [Halobacterium s... 150 2e-35
pir||T44262 transducer protein htrVI [similarity] - Halobacteriu... 150 3e-35
dbj|BAB05228.1| (AP001512) methyl-accepting chemotaxis protein [... 150 3e-35
sp|Q02929|CPS_CLOTM PUTATIVE SENSORY TRANSDUCER PROTEIN >gi|4777... 149 6e-35
dbj|BAB07582.1| (AP001520) methyl-accepting chemotaxis protein [... 148 8e-35
pir||T44606 transducer protein htpIV [similarity] - Halobacteriu... 148 1e-34
sp|P39209|TLPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPC >g... 148 1e-34
pir||B69896 methyl-accepting chemotaxis protein homolog yoaH - B... 147 2e-34
dbj|BAB05994.1| (AP001515) methyl-accepting chemotaxis protein [... 147 2e-34
pir||T44253 transducer protein htrVIII [validated] - Halobacteri... 146 3e-34
dbj|BAA06432.1| (D30762) methyl-accepting chemotaxis protein Tl... 146 4e-34
pir||S75940 methyl-accepting chemotaxis protein sll0041 - Synech... 146 4e-34
gb|AAG19381.1| (AE005032) Htr15 transducer; Htr15 [Halobacterium... 146 5e-34
pir||S74988 methyl-accepting chemotaxis protein slr1044 - Synech... 144 2e-33
pir||B71160 probable methyl-accepting chemotaxis protein - Pyroc... 143 3e-33
sp|Q48319|HTR6_HALSA HALOBACTERIAL TRANSDUCER PROTEIN VI >gi|112... 143 4e-33
gb|AAG19266.1| (AE005022) Htr4 transducer; Htr4 [Halobacterium s... 142 8e-33
pir||T44978 transducer protein hemAT [validated] - Halobacterium... 141 2e-32
pir||T44849 transducer protein car [validated] - Halobacterium s... 140 2e-32
gi|10954729 hypothetical chemoreceptor gene~similar to orf2 gene... 139 4e-32
pir||F70028 transmembrane receptor taxis protein homolog yvaQ - ... 139 4e-32
emb|CAA23676.1| (V00373) serine chemoreceptor [Escherichia coli]... 139 5e-32
sp|P02942|MCP1_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN I (MCP-... 139 5e-32
gb|AAD13223.1| (AF100302) methyl-accepting chemotaxis protein [P... 139 7e-32
pir||H83445 probable chemotaxis transducer PA1608 [imported] - P... 138 9e-32
sp|P54576|MCPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPC >g... 138 1e-31
gb|AAG19801.1| (AE005064) Htr10 transducer; Htr10 [Halobacterium... 138 1e-31
sp|Q02755|MCPC_SALTY METHYL-ACCEPTING CHEMOTAXIS CITRATE TRANSDU... 138 2e-31
gb|AAG13635.1| (AF036940) putative chemotaxis protein [Ralstonia... 137 2e-31
sp|Q48316|HTR3_HALSA HALOBACTERIAL TRANSDUCER PROTEIN III >gi|14... 137 2e-31
gb|AAG19717.1| (AE005058) Htr9 transducer; Htr9 [Halobacterium s... 137 2e-31
pir||S56581 methyl-accepting chemotaxis protein I - Escherichia ... 137 3e-31
gi|10954717 hypothetical chemoreceptor gene~similar to orf2 gene... 137 3e-31
sp|P33741|HTRI_HALHA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (MET... 136 4e-31
pir||T44964 transducer protein car [validated] - Halobacterium s... 136 4e-31
pir||G82490 methyl-accepting chemotaxis protein VCA0176 [importe... 135 8e-31
sp|P21822|MCPS_ENTAE METHYL-ACCEPTING CHEMOTAXIS SERINE TRANSDUC... 134 1e-30
pir||T44597 transducer protein htpVI [similarity] - Halobacteriu... 134 1e-30
sp|P05704|MCP3_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN III (MC... 134 2e-30
pir||D83297 probable chemotaxis transducer PA2788 [imported] - P... 134 2e-30
sp|P02941|MCP2_SALTY METHYL-ACCEPTING CHEMOTAXIS PROTEIN II (MCP... 132 5e-30
pir||B82486 hemolysin secretion protein HylB VCA0220 [imported] ... 132 5e-30
sp|P15492|HLYB_VIBCH HEMOLYSIN SECRETION PROTEIN PRECURSOR >gi|7... 132 7e-30
gb|AAA23566.1| (M13463) methyl-accepting chemotaxis protein II [... 132 7e-30
sp|P07017|MCP2_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN II (MCP... 132 7e-30
gb|AAD13198.1| (AF096317) putative methyl-accepting chemotaxis p... 132 7e-30
pdb|1QU7|A Chain A, Four Helical-Bundle Structure Of The Cytopla... 132 7e-30
dbj|BAB04284.1| (AP001509) methyl-accepting chemotaxis protein [... 132 7e-30
gb|AAC18612.1| (AF016689) Mcp-2 [Treponema pallidum] 132 9e-30
pir||H71317 probable methyl-accepting chemotaxis protein (mcp2-1... 132 9e-30
pir||G82365 methyl-accepting chemotaxis protein VC0098 [imported... 131 1e-29
pir||F75590 methyl-accepting chemotaxis protein - Deinococcus ra... 131 1e-29
pir||B82203 methyl-accepting chemotaxis protein VC1405 [imported... 131 1e-29
pir||H82503 methyl-accepting chemotaxis protein VCA0068 [importe... 131 1e-29
pir||E83067 probable chemotaxis transducer PA4633 [imported] - P... 131 1e-29
pir||C83012 probable chemotaxis transducer PA5072 [imported] - P... 131 1e-29
sp|P33955|HTR1_HALSA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (MET... 131 1e-29
pir||T44973 transducer protein htpIII [similarity] - Halobacteri... 131 1e-29
gb|AAB69316.1| (AF012922) methyl-accepting chemotaxis protein [T... 131 1e-29
pir||QREBDT aspartate chemoreceptor protein - Salmonella typhimu... 131 2e-29
pir||H82379 methyl-accepting chemotaxis protein VCA1092 [importe... 131 2e-29
pir||A29053 aspartate chemoreceptor protein - Salmonella typhimu... 130 3e-29
pir||S75285 methyl-accepting chemotaxis protein homolog sll1294 ... 130 3e-29
gi|10955066 mclA [Agrobacterium tumefaciens] >gi|8572698|gb|AAF7... 130 3e-29
pir||A83624 probable chemotaxis transducer PA0176 [imported] - P... 129 4e-29
gb|AAG34153.1|AF312875_1 (AF312875) methyl-accepting chemotaxis ... 129 4e-29
sp|P21823|MCPD_ENTAE METHYL-ACCEPTING CHEMOTAXIS ASPARTATE TRANS... 129 6e-29
pir||F82342 methyl-accepting chemotaxis protein VC0282 [imported... 129 7e-29
gb|AAG19989.1| (AE005080) Htr2 transducer; Htr2 [Halobacterium s... 127 2e-28
pir||E82314 methyl-accepting chemotaxis protein VC0514 [imported... 127 2e-28
pir||E75590 methyl-accepting chemotaxis-related protein - Deinoc... 127 3e-28
pir||H83324 probable chemotaxis transducer PA2573 [imported] - P... 127 3e-28
sp|P71410|HTR2_HALSA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (M... 126 4e-28
pir||E82222 methyl-accepting chemotaxis protein VC1248 [imported... 126 4e-28
pir||E82395 methyl-accepting chemotaxis protein VCA0974 [importe... 126 5e-28
pir||D82077 methyl-accepting chemotaxis protein VC2439 [imported... 125 6e-28
pir||B82351 methyl-accepting chemotaxis protein VC0216 [imported... 125 8e-28
gb|AAG37852.1|AF298190_2 (AF298190) methyl-accepting-chemotaxis-... 124 2e-27
pir||F82174 methyl-accepting chemotaxis protein VC1643 [imported... 123 3e-27
pir||G82618 pilus biogenesis protein XF1953 [imported] - Xylella... 123 4e-27
pir||C83440 probable chemotaxis transducer PA1646 [imported] - P... 122 7e-27
gb|AAG34158.1|AF312879_1 (AF312879) methyl-accepting chemotaxis ... 122 7e-27
pir||C70174 methyl-accepting chemotaxis protein (mcp-2) homolog ... 122 1e-26
pir||A83451 aerotaxis receptor Aer PA1561 [imported] - Pseudomon... 122 1e-26
gb|AAC46418.1| (AF022807) putative methyl accepting chemotaxis ... 122 1e-26
pir||B82215 methyl-accepting chemotaxis protein VC1313 [imported... 121 1e-26
pir||D82218 methyl-accepting chemotaxis protein VC1289 [imported... 121 2e-26
gb|AAD34887.1|AF141674_1 (AF141674) putative chemotaxis chemorec... 120 2e-26
pir||F82392 methyl-accepting chemotaxis protein VCA0988 [importe... 120 4e-26
pir||E83325 probable chemotaxis transducer PA2561 [imported] - P... 120 4e-26
pir||C83080 probable chemotaxis transducer PA4520 [imported] - P... 120 4e-26
gb|AAG34154.1|AF312876_1 (AF312876) methyl-accepting chemotaxis ... 120 4e-26
gb|AAF61289.1|AF064528_2 (AF064528) phototransducer; methyl-acce... 119 5e-26
gb|AAD13638.1| (U84257) methyl-accepting chemotaxis protein B [T... 119 6e-26
pir||E82508 methyl-accepting chemotaxis protein VCA0031 [importe... 119 6e-26
pir||D75590 methyl-accepting chemotaxis protein - Deinococcus ra... 118 8e-26
pir||F83280 probable chemotaxis transducer PA2920 [imported] - P... 118 8e-26
pir||E83041 probable chemotaxis transducer PA4844 [imported] - P... 118 8e-26
gb|AAG19751.1| (AE005061) Htr12 transducer; Htr12 [Halobacterium... 118 8e-26
emb|CAB99193.1| (AJ293587) hypothetical protein [Pseudomonas put... 118 1e-25
gb|AAG19428.1| (AE005036) Htr13 transducer; Htr13 [Halobacterium... 118 1e-25
gb|AAB50497.1| (U30319) DcrH [Desulfovibrio vulgaris] 117 2e-25
pir||E82481 methyl-accepting chemotaxis protein VCA0268 [importe... 117 2e-25
pir||F82382 methyl-accepting chemotaxis protein VCA1069 [importe... 117 2e-25
pir||T44276 transducer protein htrXII [similarity] - Halobacteri... 117 2e-25
pir||G83313 probable chemotaxis transducer PA2652 [imported] - P... 117 2e-25
pir||S72163 methyl-accepting chemotaxis protein mcpA - Rhizobium... 116 3e-25
emb|CAA70726.1| (Y09534) methyl-accepting chemotaxis proteins [R... 116 3e-25
pir||C82206 methyl-accepting chemotaxis protein VC1403 [imported... 116 3e-25
pir||C83184 probable chemotaxis transducer PA3708 [imported] - P... 116 3e-25
pir||A71978 methyl-accepting chemotaxis protein (MCP) - Helicoba... 115 7e-25
pir||B82110 methyl-accepting chemotaxis protein VC2161 [imported... 115 7e-25
pir||D83109 probable chemotaxis transducer PA4290 [imported] - P... 115 7e-25
sp|P35841|DCRA_DESVH CHEMORECEPTOR PROTEIN A >gi|282156|pir||A42... 115 9e-25
sp|P42257|PILJ_PSEAE PILJ PROTEIN >gi|540959|pir||S40037 pilJ pr... 115 9e-25
pir||B64530 methyl-accepting chemotaxis transducer (tlpC) - Heli... 115 9e-25
pir||H82402 methyl-accepting chemotaxis protein VCA0906 [importe... 115 9e-25
pir||D82393 methyl-accepting chemotaxis protein VCA0979 [importe... 115 1e-24
pir||D82386 methyl-accepting chemotaxis protein VCA1034 [importe... 115 1e-24
pir||C83107 chemotactic transducer PctB PA4310 [imported] - Pseu... 113 3e-24
pir||H82143 methyl-accepting chemotaxis protein VC1898 [imported... 113 3e-24
pir||F81297 probable MCP-type signal transduction protein Cj1506... 113 4e-24
sp|P55439|Y4FA_RHISN PROBABLE CHEMORECEPTOR Y4FA (METHYL-ACCEPTI... 113 5e-24
pir||E83032 probable chemotaxis transducer PA4915 [imported] - P... 113 5e-24
pir||E82431 methyl-accepting chemotaxis protein VCA0663 [importe... 112 6e-24
sp|Q00986|MCPA_CAUCR CHEMORECEPTOR MCPA (METHYL-ACCEPTING CHEMOT... 112 8e-24
pir||H82147 methyl-accepting chemotaxis protein VC1868 [imported... 112 8e-24
emb|CAB54058.1| (AJ245436) methyl-accepting chemotaxis protein, ... 111 2e-23
pir||C69832 methyl-accepting chemotaxis protein homolog yhfV - B... 108 9e-23
emb|CAB93675.1| (AJ404229) putative receptor protein [Rhodobacte... 108 9e-23
pir||T03461 methyl-accepting chemotaxis protein mcpA - Rhodobact... 107 2e-22
pir||H81431 methyl-accepting chemotaxis signal transduction prot... 107 3e-22
pir||B81251 probable methyl-accepting chemotaxis signal transduc... 106 4e-22
sp|P43500|FRZC_MYXXA FRZCD PROTEIN (FRIZZY AGGREGATION PROTEIN F... 106 6e-22
pir||E82379 methyl-accepting chemotaxis protein VCA1088 [importe... 106 6e-22
pir||B71975 methyl-accepting chemotaxis protein (MCP) - Helicoba... 105 1e-21
pir||E81444 probable methyl-accepting chemotaxis signal transduc... 105 1e-21
sp|P29486|TCPI_VIBCH TOXIN CORREGULATED PILUS BIOSYNTHESIS PROTE... 104 2e-21
pir||JC4735 methyl-accepting chemotaxis protein A - Rhodobacter ... 103 4e-21
pir||D82274 toxin co-regulated pilus biosynthesis protein I VC08... 103 4e-21
pir||C64532 methyl-accepting chemotaxis protein (tlpA) - Helicob... 102 5e-21
pir||H81324 probable MCP-domain signal transduction protein Cj11... 101 2e-20
pir||G71373 probable methyl-accepting chemotaxis protein (mcp1) ... 99 1e-19
gb|AAC04555.1| (AF047698) putative methyl-accepting chemotaxis p... 98 1e-19
pir||F71298 probable methyl-accepting chemotaxis protein (mcp2-2... 98 1e-19
sp|Q52877|YCH1_RHIME HYPOTHETICAL 57.4 KDA PROTEIN IN CHEY1 5'RE... 93 5e-18
pir||D70174 methyl-accepting chemotaxis protein (mcp-3) homolog ... 90 4e-17
gi|11321579 myosin, heavy polypeptide 13, skeletal muscle; extra... 76 5e-13
pir||F75103 probable purine NTPase PAB0812 - Pyrococcus abyssi (... 76 5e-13
pir||B75150 chromosome segregation protein (smc1) PAB2109 - Pyro... 76 7e-13
gi|11498637 purine NTPase, putative [Archaeoglobus fulgidus] >gi... 76 9e-13
pir||T14156 kinesin-related protein - African clawed frog >gi|25... 75 2e-12
gi|4502781 centromere protein E; Centromere autoantigen E (312kD... 74 3e-12
prf||1819485A CENP-E protein [Homo sapiens] 74 3e-12
dbj|BAA34954.1| (AB015484) myosin heavy chain [Dugesia japonica] 73 4e-12
dbj|BAA96489.1| (AB039333) chemotactic transducer CtpL [Pseudomo... 73 4e-12
gb|AAC46490.1| (U09782) myosin heavy chain [Argopecten irradians... 72 1e-11
gb|AAF62392.1|AF183909_2 (AF183909) myosin heavy chain catch (sm... 72 1e-11
gb|AAF62394.1| (AF183909) myosin heavy chain cardiac muscle spec... 72 1e-11
gb|AAF62395.1| (AF183909) myosin heavy chain cardiac muscle spec... 72 1e-11
emb|CAB64663.1| (AJ249992) pedal retractor muscle myosin heavy c... 72 1e-11
sp|P25386|USO1_YEAST INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO... 71 2e-11
gi|6320145 Integrin analogue gene; Uso1p [Saccharomyces cerevisi... 71 2e-11
emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevisiae] 71 2e-11
sp|P24733|MYS_AEQIR MYOSIN HEAVY CHAIN, STRIATED MUSCLE >gi|1027... 71 3e-11
gb|AAB19995.1| myosin heavy chain=rod region [Aequipecten irradi... 71 3e-11
gb|AAF62391.1|AF183909_1 (AF183909) myosin heavy chain striated ... 71 3e-11
pir||S30782 integrin homolog - yeast (Saccharomyces cerevisiae) 70 4e-11
gb|AAB00143.1| (L03188) putative [Saccharomyces cerevisiae] 70 4e-11
pir||S39082 myosin heavy chain, embryonic - chicken (fragment) 70 5e-11
gb|AAC69932.2| (AC005700) putative myosin heavy chain [Arabidops... 70 5e-11
gb|AAF99315.1|AF272034_1 (AF272034) fast myosin heavy chain isof... 70 5e-11
dbj|BAA34955.1| (AB015485) myosin heavy chain [Dugesia japonica] 69 9e-11
>pir||H75006 methyl-accepting chemotaxis related protein PAB1308 - Pyrococcus
abyssi (strain Orsay) >gi|5459008|emb|CAB50494.1|
(AJ248288) METHYL-ACCEPTING CHEMOTAXIS RELATED PROTEIN
[Pyrococcus abyssi]
Length = 435
Score = 815 bits (2081), Expect = 0.0
Identities = 435/435 (100%), Positives = 435/435 (100%)
Query: 1 MGGGAMVRVTIITPVIPFVLTVIPAVFNSIPGAIVGGIVGVGIASYINYKGETKVKVSAD 60
MGGGAMVRVTIITPVIPFVLTVIPAVFNSIPGAIVGGIVGVGIASYINYKGETKVKVSAD
Sbjct: 1 MGGGAMVRVTIITPVIPFVLTVIPAVFNSIPGAIVGGIVGVGIASYINYKGETKVKVSAD 60
Query: 61 IEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIK 120
IEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIK
Sbjct: 61 IEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIK 120
Query: 121 NAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISK 180
NAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISK
Sbjct: 121 NAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISK 180
Query: 181 ETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIEN 240
ETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIEN
Sbjct: 181 ETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIEN 240
Query: 241 ITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQ 300
ITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQ
Sbjct: 241 ITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQ 300
Query: 301 IGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEK 360
IGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEK
Sbjct: 301 IGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEK 360
Query: 361 IEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKF 420
IEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKF
Sbjct: 361 IEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKF 420
Query: 421 KLSKDHESQVKKITA 435
KLSKDHESQVKKITA
Sbjct: 421 KLSKDHESQVKKITA 435
>pir||D71155 probable methyl-accepting chemotaxis protein - Pyrococcus
horikoshii >gi|3256846|dbj|BAA29529.1| (AP000002) 428aa
long hypothetical methyl-accepting chemotaxis protein
[Pyrococcus horikoshii]
Length = 428
Score = 678 bits (1730), Expect = 0.0
Identities = 349/427 (81%), Positives = 397/427 (92%)
Query: 7 VRVTIITPVIPFVLTVIPAVFNSIPGAIVGGIVGVGIASYINYKGETKVKVSADIEEYEK 66
++V++ITP++PF+ T++PA +S+PGA++GG++G+GIASYINY+ E K ++ ++EEY+K
Sbjct: 1 MKVSVITPILPFLFTIVPAAIDSLPGAVIGGVIGLGIASYINYRTEGKAELPMELEEYKK 60
Query: 67 QLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDV 126
L++ I+EI IL+RIA GDLSVED EI G AK+R+GIE LR+SIS LVLN+KNAAIDV
Sbjct: 61 NLEKRIEEISVILERIAHGDLSVEDSEISGELAKIREGIEKLRQSISGLVLNVKNAAIDV 120
Query: 127 RNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTM 186
+NH KVMK+NIEQ+A++V QVAEAINQVS EAQREQENISKMT+TMRYI+DISKETVSTM
Sbjct: 121 KNHAKVMKDNIEQIAEAVAQVAEAINQVSAEAQREQENISKMTETMRYINDISKETVSTM 180
Query: 187 EEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVIS 246
EEFEASMREMAQLAKEGGEKGR AA QIEEISRMM+ IEETVRGVA+MGK+IENITNVIS
Sbjct: 181 EEFEASMREMAQLAKEGGEKGRMAATQIEEISRMMQMIEETVRGVADMGKNIENITNVIS 240
Query: 247 SISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIG 306
SI+EQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKI
Sbjct: 241 SIAEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIS 300
Query: 307 ESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLR 366
ESVEVT+QGAEVV TSTEVIKESV+YLTQVAEMMEEME KASELREKVIQEGEKIEEGL+
Sbjct: 301 ESVEVTKQGAEVVGTSTEVIKESVNYLTQVAEMMEEMEAKASELREKVIQEGEKIEEGLK 360
Query: 367 FLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKLSKDH 426
FLENLAASAEETTAAAEEVSAAAEEQSSALQEL+ESVKELDRLVDVLME I KFKLSKDH
Sbjct: 361 FLENLAASAEETTAAAEEVSAAAEEQSSALQELKESVKELDRLVDVLMEHIGKFKLSKDH 420
Query: 427 ESQVKKI 433
E++VK+I
Sbjct: 421 EAKVKEI 427
>pir||H75001 methyl-accepting chemotaxis protein (tlpc) PAB1336 - Pyrococcus
abyssi (strain Orsay) >gi|5458968|emb|CAB50454.1|
(AJ248288) methyl-accepting chemotaxis protein (tlpC)
[Pyrococcus abyssi]
Length = 739
Score = 321 bits (813), Expect = 1e-86
Identities = 173/366 (47%), Positives = 258/366 (70%), Gaps = 9/366 (2%)
Query: 62 EEYEKQLQREIDEIVKILDRIAQGDLS----VEDK-EIGGMGAKVRQGIEDLRKSISQLV 116
E K L ++ I K L+R+A+GDLS VE + E+ + +R E R+SI LV
Sbjct: 378 EAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLV 437
Query: 117 LNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIH 176
A D+ + + + V +++ QV EAI QVSIEAQR+QE I+++TD MR +
Sbjct: 438 ----EMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVA 493
Query: 177 DISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGK 236
S+E+V MEEF ++ E+ +A EG +KG +A +IE+I MM +IEETV VAEM +
Sbjct: 494 QTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSR 553
Query: 237 SIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRE 296
+IE ITNVI+SI+EQTNLLALNAAIEAARAGEAG+GFAVVA EIRKLAEESK+AA++I+
Sbjct: 554 NIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKS 613
Query: 297 LIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQ 356
+I +I D+I E+VE T++G V+ S+E +++++ YL +A +++E + + ++E++++
Sbjct: 614 IIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVR 673
Query: 357 EGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQ 416
E++++ LR LENLAASAEETTA+AEEVS+A E+Q++A++ELR + +EL +V + +
Sbjct: 674 TQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQI 733
Query: 417 ISKFKL 422
+ KFK+
Sbjct: 734 VGKFKV 739
>pir||F71161 probable chemotaxis protein - Pyrococcus horikoshii
>gi|3256896|dbj|BAA29579.1| (AP000002) 739aa long
hypothetical chemotaxis protein [Pyrococcus horikoshii]
Length = 739
Score = 319 bits (809), Expect = 3e-86
Identities = 171/366 (46%), Positives = 258/366 (69%), Gaps = 9/366 (2%)
Query: 62 EEYEKQLQREIDEIVKILDRIAQGDLS----VEDK-EIGGMGAKVRQGIEDLRKSISQLV 116
E K L + I K L+R+A+GDL+ VE K E+ + ++ LR SI LV
Sbjct: 378 EAVSKDLVGTLTAITKRLERLAEGDLTNGLTVEAKGELRDLIEDIKSVTNTLRTSIGSLV 437
Query: 117 LNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIH 176
+ A ++ + + V +++ QV EAI QVS+EAQR+QE I+++T+ MR +
Sbjct: 438 ----DMANELEKRANALAQISNDVTEAINQVNEAIQQVSVEAQRQQETINEITEGMRLVA 493
Query: 177 DISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGK 236
S+E+V MEEFE ++ E+ +A EG +KG A +IE+I MM +IEETV V+EM +
Sbjct: 494 QTSEESVKAMEEFEGAVSEVVSIANEGSQKGDDALKRIEDIQHMMSRIEETVSKVSEMSR 553
Query: 237 SIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRE 296
+IE ITNVI+SI+EQTNLLALNAAIEAARAGEAG+GFAVVA EIRKLAEESK+AA++I+
Sbjct: 554 NIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKS 613
Query: 297 LIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQ 356
+I +I D+I E+VE T++G V+ S+E +++++ YL +A +++E + SE+++++++
Sbjct: 614 IIDKITDEIKEAVEATKEGVNVIGQSSETLRDTIGYLANIATLLQETSERMSEVKDQIVK 673
Query: 357 EGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQ 416
E++++ LR LENLAASAEETTA+AEEVS+A EEQ+++++ELR + +EL +V+ +
Sbjct: 674 TQEEVDKSLRALENLAASAEETTASAEEVSSAVEEQTASIEELRRAAQELRDIVEKMRGI 733
Query: 417 ISKFKL 422
I+KFK+
Sbjct: 734 IAKFKV 739
>pir||F71197 probable methyl-accepting chemotaxis protein - Pyrococcus
horikoshii >gi|3258290|dbj|BAA30973.1| (AP000007) 507aa
long hypothetical methyl-accepting chemotaxis protein
[Pyrococcus horikoshii]
Length = 507
Score = 292 bits (740), Expect = 4e-78
Identities = 159/387 (41%), Positives = 253/387 (65%), Gaps = 6/387 (1%)
Query: 43 IASYINYKGETKV-KVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKV 101
+ S I Y+ + ++ K+ ++ + ++ I +++I++GD++ E+ + G
Sbjct: 121 LISRIKYREKDEIGKLLEGFRAISTEVLQTLEVITDRMEKISKGDVT-EELTLHAKG-DF 178
Query: 102 RQGIEDLRKSISQL---VLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEA 158
+ +RK+I QL + +++ A+ + + ++ ++V QVAEAI QVS EA
Sbjct: 179 ESILNSMRKTIVQLRNLMKTVRDLAVTLETRADDLARISSEITEAVNQVAEAIQQVSTEA 238
Query: 159 QREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEIS 218
QR+QENI+++ D M D+++ TV MEEF + + E+ +A+EG EKG +A Q+ +I
Sbjct: 239 QRQQENITQIMDGMNLTADVTQRTVEAMEEFSSVVNEVISIAREGKEKGEKAISQVGDIQ 298
Query: 219 RMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVAD 278
M I + V+ VAEM K++ I N I+ I+EQTNLLALNAAIEAARAGE G+GFAVVA
Sbjct: 299 NAMRVISQAVQEVAEMSKNVGEIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQ 358
Query: 279 EIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAE 338
E+R LAEESK+AAE IRE++ QI DK+ ++VE T++G ++V S + ++E+V YL V E
Sbjct: 359 EVRNLAEESKEAAERIREILNQIQDKVEKAVEETEKGVKIVDNSVDFLRETVGYLMNVGE 418
Query: 339 MMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQE 398
+++++E K ++ ++ E +E + LENLAASAEETTA+AEEVSA+AEEQ+S+L+E
Sbjct: 419 LLDDVEDKLQAVKSELANTQEHVENAKKALENLAASAEETTASAEEVSASAEEQASSLEE 478
Query: 399 LRESVKELDRLVDVLMEQISKFKLSKD 425
+R ++ EL +V L E + K+ K+
Sbjct: 479 VRRNIVELRDIVKKLREAVEFIKVEKE 505
>pir||B75158 sensory rhodopsin II transducer (htr-ii) (methyl-accepting
phototaxis protein ii) (mpp-ii) PAB2066 - Pyrococcus
abyssi (strain Orsay) >gi|5457855|emb|CAB49345.1|
(AJ248284) SENSORY RHODOPSIN II TRANSDUCER (HTR-II)
(METHYL-ACCEPTING PHOTOTAXIS PROTEIN II) (MPP-II)
[Pyrococcus abyssi]
Length = 501
Score = 289 bits (732), Expect = 4e-77
Identities = 151/384 (39%), Positives = 259/384 (67%), Gaps = 6/384 (1%)
Query: 43 IASYINYKGETKV-KVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKV 101
+ S I Y+ + ++ K+ + + + ++ I + +++I++GD+S +D ++ G
Sbjct: 118 MVSKIQYREDDEIGKLIEGFRAISQDVLQTLEIITERMEKISEGDVS-DDLKVHAKG-DF 175
Query: 102 RQGIEDLRKSIS---QLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEA 158
+ +RK+IS +L+ +++ A+ + + + ++++++ QVAEAI QVS+EA
Sbjct: 176 ESILNSMRKTISNLRELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEA 235
Query: 159 QREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEIS 218
QR+QENI+++ + M D+++ TV MEEF + E+ +A+EG +KG +A Q+E+I
Sbjct: 236 QRQQENITEIMEGMNITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQ 295
Query: 219 RMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVAD 278
M+ I + V+ VAEM K++ +I N I+ I+EQTNLLALNAAIEAARAGE G+GFAVVA
Sbjct: 296 DAMKVIRQAVQEVAEMSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQ 355
Query: 279 EIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAE 338
E+R LAEESK+AAE IR ++ +I +K+ ++VE T++G +VV S + +KE+V YL + E
Sbjct: 356 EVRNLAEESKEAAEKIRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGE 415
Query: 339 MMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQE 398
+++++E K +++ ++ E +E + LENLAASA+ETTA+AEEVSA+A+EQ+S+++E
Sbjct: 416 LLDDVESKLQDIKNELANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEE 475
Query: 399 LRESVKELDRLVDVLMEQISKFKL 422
++ ++ EL +V L E + K+
Sbjct: 476 VKRNIIELRDIVKKLREAVEFIKV 499
>pir||A72254 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981993|gb|AAD36498.1|AE001795_1 (AE001795)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 566
Score = 189 bits (475), Expect = 5e-47
Identities = 111/364 (30%), Positives = 195/364 (53%), Gaps = 9/364 (2%)
Query: 64 YEKQLQREIDEIVKILDRIAQGDLSVE-----DKEIGGMGAKVRQGIEDLRKSISQLVLN 118
Y + L R+ ++ L++I+ GDLSV E G + K+ + + +LRK + +
Sbjct: 207 YGRVLSRKTKAVLSALEKISSGDLSVSVDIKSKDEFGLIAQKLNETVGNLRKMVQE---- 262
Query: 119 IKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDI 178
I + +V ++ + +Q+ +++++A A + +S E Q +I ++T +
Sbjct: 263 IDKSQDEVERVSEELFALSQQLRSALEEIARASDTISKEVQNASASIEEVTSGSEEVSAN 322
Query: 179 SKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSI 238
S+ ++E + +A A+ G +A ++E++S + + V V E ++I
Sbjct: 323 SQNISKLIQEISENADNIADFARNGQRVLEEAVKKVEDVSENSRETADVVSNVTESARNI 382
Query: 239 ENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELI 298
E I I SI+EQTNLLALNAAIEAARAGEAG+GFAVVADEIRKLAEES+KA E+I +++
Sbjct: 383 EEIVRTIQSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESQKATEEISQIL 442
Query: 299 KQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEG 358
+ I + + + E++++ E+ K + +++ES Q+ +E++ + + +
Sbjct: 443 ENIREGVERTNEMSKKNVEITKDARRLVEESYESFNQIVTRIEDLAARIEGIAASAQELS 502
Query: 359 EKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQIS 418
EE L+ +A + EEVS EQ A + + + EL +L D L E +
Sbjct: 503 AASEEMSSALDAVAKTTTTVADEVEEVSENITEQEKAAKRIADIGTELKKLSDELKEDVE 562
Query: 419 KFKL 422
+FK+
Sbjct: 563 RFKI 566
>dbj|BAA75352.1| (AB011838) metyl-accepting chemotaxis protein [Bacillus halodurans]
Length = 667
Score = 183 bits (459), Expect = 4e-45
Identities = 117/370 (31%), Positives = 201/370 (53%), Gaps = 24/370 (6%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVED------KEIGGMGAKVRQGIEDLRKSISQLVLNI 119
+ + R I I + IA GDL+ D EIG + V Q +L++ I Q +
Sbjct: 309 RSMSRPIRLITSHVQTIASGDLTSSDLQIKRQDEIGILAHNVNQMATNLKEVIHQ----V 364
Query: 120 KNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDIS 179
++A V ++ + + E+V+ S +Q++E+I QV+ ++++ +++ T ++ +
Sbjct: 365 GDSADRVAASSQQLSASSEEVSRSSEQISESIQQVASGSEKQSSGVNESTLSLEEVSSSV 424
Query: 180 KETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIE 239
++ + S + AKEGG+ + + +I + + + +AE K I
Sbjct: 425 QQIAEASVQITESANSTIEKAKEGGQSVENNVETMNKIHESVTDSVQITKMLAERSKEIN 484
Query: 240 NITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIK 299
NI +VI+SI+EQTNLLALNAAIEAARAGE GKGFAVVADE+RKLAE S+ +++ I E++
Sbjct: 485 NILDVITSIAEQTNLLALNAAIEAARAGEHGKGFAVVADEVRKLAESSQHSSQQISEIVV 544
Query: 300 QIGDKIGES-------VEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELRE 352
+I ++ + +E + G V + +E + QVAE +E M + E+
Sbjct: 545 EIQKEMDRTSTAMNGVMEEVKDGLTVANETKTHFQEIIQSTNQVAEQIESMAATSEEISA 604
Query: 353 KVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDV 412
+V Q E +A +AE T+ +A++V+AA+EEQ + ++E+ S + L ++
Sbjct: 605 EVEQVSASFNE-------IAVTAENTSDSAQDVAAASEEQLATMEEVTSSAQYLSQMATD 657
Query: 413 LMEQISKFKL 422
L E +SKFK+
Sbjct: 658 LRELLSKFKV 667
>dbj|BAB07634.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 667
Score = 182 bits (456), Expect = 8e-45
Identities = 117/370 (31%), Positives = 200/370 (53%), Gaps = 24/370 (6%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVED------KEIGGMGAKVRQGIEDLRKSISQLVLNI 119
+ + R I I + IA GDL+ D EIG + V Q +L++ I Q +
Sbjct: 309 RSMSRPIRLITSHVQTIASGDLTSSDLQIKRQDEIGILAHNVNQMATNLKEVIHQ----V 364
Query: 120 KNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDIS 179
++A V ++ + + E+V+ S +Q++E+I QV+ ++++ +++ T ++ +
Sbjct: 365 GDSADRVAASSQQLSASSEEVSRSSEQISESIQQVASGSEKQSSGVNESTLSLEEVSSSV 424
Query: 180 KETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIE 239
++ + S + AKEGG+ + + +I + + + +AE K I
Sbjct: 425 QQIAEASVQITESANSTIEKAKEGGQSVENNVETMNKIHESVTDSVQITKMLAERSKEIN 484
Query: 240 NITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIK 299
NI +VI+SI+EQTNLLALNAAIEAARAGE GKGFAVVADE+RKLAE S+ +++ I E++
Sbjct: 485 NILDVITSIAEQTNLLALNAAIEAARAGEHGKGFAVVADEVRKLAESSQHSSQQISEIVV 544
Query: 300 QIGDKIGES-------VEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELRE 352
+I ++ + +E + G V + +E + QVAE +E M + E+
Sbjct: 545 EIQKEMDRTSTAMNGVMEEVKDGLTVANETKTHFQEIIQSTNQVAEQIESMAATSEEISA 604
Query: 353 KVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDV 412
+V Q E +A AE T+ +A++V+AA+EEQ + ++E+ S + L ++
Sbjct: 605 EVEQVSASFNE-------IAVIAENTSDSAQDVAAASEEQLATMEEVTSSAQYLSQMATD 657
Query: 413 LMEQISKFKL 422
L E +SKFK+
Sbjct: 658 LRELLSKFKV 667
>dbj|BAB07487.1| (AP001519) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 433
Score = 177 bits (444), Expect = 2e-43
Identities = 122/397 (30%), Positives = 210/397 (52%), Gaps = 26/397 (6%)
Query: 30 IPGAIVGGIVGVGIASYINYKGETKVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSV 89
I G I GI+G +S+ K + ++ SA K + +I V + S
Sbjct: 58 ILGVIWNGILGYVASSFFIAKPLSALERSA-----RKAAEGDIHNDVAV---------SK 103
Query: 90 EDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENI--EQVADSVQQV 147
D EI +G + + LR ++++ N V KV + NI +Q +D +Q+
Sbjct: 104 SDDEIRSLGLAYNEMLASLRSMVNEINANF------VETDAKVKEMNIAAQQSSDRAEQI 157
Query: 148 AEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKG 207
A ++++S A+ E++ + + M ++ I+++ ME+ S EM + E +
Sbjct: 158 AVTMSEISKGAENSAESVQQTAEAMDQVNQIAEQVQERMEKSRQSSNEMVKTLAESRKVI 217
Query: 208 RQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAG 267
I++++ EK ++V + E K ++ I +++ I+EQTNLLALNA+IEAARAG
Sbjct: 218 DSLVLGIKQLAEDNEKSLDSVGRLEEQAKEVDEIISLVGDIAEQTNLLALNASIEAARAG 277
Query: 268 EAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIK 327
E GKGFAVVADE+RKLA+ES KA + I L++ I +++ VTQ G +V K TE K
Sbjct: 278 EHGKGFAVVADEVRKLADESGKAVQGISNLVRNIQEEVKH--VVTQIGTQVEKAKTESEK 335
Query: 328 ESVS--YLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEV 385
+ + + +V + E+ E+ E + + + I E + + +AA AEET+A A++V
Sbjct: 336 GTATNRAIQEVETSVREVANVIEEISEMMKTQTKAIRETAKQTQEVAAIAEETSAGAQQV 395
Query: 386 SAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKL 422
+A ++Q++A+QE+ + L + L + I KF +
Sbjct: 396 AAVTDQQTNAVQEMSTTANILSKQAKKLKQTIEKFMI 432
>sp|P39214|MCPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPA (H1)
>gi|1075866|pir||B54078 methyl-accepting chemotaxis
transducer mcpA - Bacillus subtilis
>gi|459690|gb|AAA20556.1| (L29189) transmembrane
receptor [Bacillus subtilis] >gi|2635608|emb|CAB15102.1|
(Z99119) methyl-accepting chemotaxis protein [Bacillus
subtilis] >gi|2635620|emb|CAB15113.1| (Z99120)
methyl-accepting chemotaxis protein [Bacillus subtilis]
Length = 661
Score = 172 bits (431), Expect = 7e-42
Identities = 104/362 (28%), Positives = 201/362 (54%), Gaps = 9/362 (2%)
Query: 66 KQLQREIDEIVKILDRIAQGDLS----VEDK-EIGGMGAKVRQGIEDLRKSISQLVLNIK 120
+ + + ++V RI++GDL+ + K E+G +G + ++ S+ L+ I+
Sbjct: 303 RSITTPLKQLVGSSKRISEGDLTETIDIRSKDELGELG----KSFNNMASSLRSLIHAIQ 358
Query: 121 NAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISK 180
++ +V ++ + + Q + + + + AI Q S +++ ENI + + ++D
Sbjct: 359 DSVDNVAASSEELTASAAQTSKATEHITLAIEQFSNGNEKQNENIETAAEHIYQMNDGLT 418
Query: 181 ETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIEN 240
E S + ++A EGG+ Q Q+ I + +++ E+ VRG+ K I N
Sbjct: 419 NMAQASEVITDSSVQSTEIASEGGKLVHQTVGQMNVIDKSVKEAEQVVRGLETKSKDITN 478
Query: 241 ITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQ 300
I VI+ I++QTNLLALNAAIEAARAGE G+GF+VVA+E+RKLA +S +A++I LI +
Sbjct: 479 ILRVINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIEGLIIE 538
Query: 301 IGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEK 360
I +I S+ + Q + V+T ++ ++ +++EM ++ + + V Q
Sbjct: 539 IVKEINTSLGMFQSVNQEVQTGLDITDKTEMSFKRISEMTNQIAGELQNMSATVQQLSAS 598
Query: 361 IEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKF 420
EE E++A+ ++E++A ++++A+AEEQ ++++E+ S + L + + L + +F
Sbjct: 599 SEEVSGASEHIASISKESSAHIQDIAASAEEQLASMEEISSSAETLSSMAEELRDMTKRF 658
Query: 421 KL 422
K+
Sbjct: 659 KI 660
>pir||F72288 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981694|gb|AAD36222.1|AE001772_1 (AE001772)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 539
Score = 172 bits (431), Expect = 7e-42
Identities = 99/362 (27%), Positives = 195/362 (53%), Gaps = 8/362 (2%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVEDKEIGGMG--AKVRQGIEDLRKSISQLVLNIKNAA 123
+ L + ++ +++ ++ G L+VE ++I K +E LR+ + ++ I A+
Sbjct: 181 RNLTTPLKKLAVLVENLSHGVLNVEIEKIRSKDEIGKAAMAVEKLREILLDIITGINKAS 240
Query: 124 IDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETV 183
+V + ++ + E+++ +V ++EA+ ++ EA + + T ++ + +
Sbjct: 241 SEVSSSSEELSATSEELSANVNSISEALVSLNKEADENSATLEEFTASIEELSSTADSNS 300
Query: 184 STMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITN 243
+ + S + + + ++ E+ R+ ++ M E ++ + + M ++I +I +
Sbjct: 301 KSAQAMLESTQRVHEQVEKSTERIREITEKAHSTREMSENTKQALNRLLSMAENINSIVD 360
Query: 244 VISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGD 303
I+SI+EQTNLLALNAAIEAARAGEAG+GFAVVADEIRKLAEESK A + I E++ ++ D
Sbjct: 361 TINSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESKAATQQIGEILGKLRD 420
Query: 304 KIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEE 363
+I S ++ + A ++ + +++ + ME+++ + + ++ +EE
Sbjct: 421 EINNSSKIVESTASAIEETASLVESIKDVFESIRIAMEDVQSRVESVAASTQEQSASLEE 480
Query: 364 ---GLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKF 420
G+ L L E T++A ++A +E ++AL+EL S + L L L +I F
Sbjct: 481 LSAGVTRLTELLNKTRENTSSA---NSALQEANAALEELSASAQSLAELAQELQRRIEFF 537
Query: 421 KL 422
K+
Sbjct: 538 KI 539
>dbj|BAB04595.1| (AP001510) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 560
Score = 171 bits (429), Expect = 1e-41
Identities = 106/363 (29%), Positives = 192/363 (52%), Gaps = 10/363 (2%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVEDKEIGGMG--AKVRQGIEDLRKSISQLVLNIKNAA 123
K + + + + K+ +A GDL+ E +I ++ + E +++++ L+ I A
Sbjct: 202 KMITKPLARLTKVARHVADGDLTTERVKIKNRDEIGQLNESFEAMKENLRGLIQRILQNA 261
Query: 124 IDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETV 183
V ++ + + EQ + + +Q AI +S A + T+ ++ I E
Sbjct: 262 DQVAVSSEQLSASAEQTSSATEQTTSAIESISRGADMQTSAAQTSVKTLEEMNQIVTEMT 321
Query: 184 STMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITN 243
++ E++ A EG ++ + ++ I ++ ++ ++ +++ + I I +
Sbjct: 322 DGAKQIESNANLTLTYANEGDTLVKETVENMQSIDESVKGSDQAIQTLSKRSEDIVEILD 381
Query: 244 VISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGD 303
VI SI+EQTNLLALNAAIEAARAGE GKGFAVVA+E+RKLAEES ++ + I +LI ++
Sbjct: 382 VIQSIAEQTNLLALNAAIEAARAGEHGKGFAVVAEEVRKLAEESSQSTKKIHDLIDEMVK 441
Query: 304 KIGESVE----VTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGE 359
+ SVE V ++ + +KT+ + ++ S + + + ++E RE E
Sbjct: 442 ETNNSVEKMGLVKEEVSVGLKTAAQTSEKFHSIVASIQGVTSQVEAMNRVTRE----VAE 497
Query: 360 KIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISK 419
K E ++N+A+ AEE+ + VSA AEE +++QE+ S +L + + L E I +
Sbjct: 498 KSTEVATSVQNMASVAEESAEQSSSVSAVAEETLASMQEVTASANQLTEMAETLQEAIKQ 557
Query: 420 FKL 422
FKL
Sbjct: 558 FKL 560
>gi|11498650 methyl-accepting chemotaxis protein (tlpC-2) [Archaeoglobus
fulgidus] >gi|7483868|pir||E69380 methyl-accepting
chemotaxis protein (tlpC-2) homolog - Archaeoglobus
fulgidus >gi|2649548|gb|AAB90198.1| (AE001031)
methyl-accepting chemotaxis protein (tlpC-2)
[Archaeoglobus fulgidus]
Length = 834
Score = 171 bits (428), Expect = 2e-41
Identities = 106/387 (27%), Positives = 209/387 (53%), Gaps = 13/387 (3%)
Query: 44 ASYINYKGET-----KVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMG 98
A N KGE ++ +I+E EK+++ + + L+ ++ G ++ +
Sbjct: 418 APVYNEKGEIIGVVESIEDLTEIKEKEKEIEEMLAYTGRCLNMLSNGIRELQAGNLDVRL 477
Query: 99 AKVR--------QGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEA 150
K+R + + + ++V + + + N + E + Q+ +QQ++ A
Sbjct: 478 EKIRDDEFGETFEAFNEFAGRMQEIVRKLADDMKETANQVREAAEAVNQMNAGMQQISSA 537
Query: 151 INQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQA 210
Q++ ++ + T ++ +I K+ + E E +Q A+ ++G +A
Sbjct: 538 SQQIATGSENLSRLANASTLDLKAAEEIFKDLTARAENSAKFADEASQNAEMAKKEGVKA 597
Query: 211 ADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAG 270
+ I+ I + +E + V + + ++I +T I SI++QTNLLALNAAIEAARAGE G
Sbjct: 598 LEIIKSIVQEVENASKVVETLEQAVRNIGKVTERIKSIADQTNLLALNAAIEAARAGEHG 657
Query: 271 KGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESV 330
+GFAVVADE+RKLAEES+K+ E+I E+++ + ++ + +E T + E +E I+ ++
Sbjct: 658 RGFAVVADEVRKLAEESRKSTEEIDEIVRNVQEETRKVIEATNKVKESSLQGSEGIENAL 717
Query: 331 SYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAE 390
++AE + + ++ K + KIE+ R E +A++AEE A++EE SAA E
Sbjct: 718 MKAGEIAEAVNRINEMLGQVAAKAEEGLAKIEQLARNFEEVASTAEENAASSEETSAAIE 777
Query: 391 EQSSALQELRESVKELDRLVDVLMEQI 417
EQ++A+Q++ ++++++ + + ++ I
Sbjct: 778 EQTAAVQQVSIAMEKVNEIANATLQTI 804
>dbj|BAB07622.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 695
Score = 169 bits (425), Expect = 4e-41
Identities = 106/362 (29%), Positives = 199/362 (54%), Gaps = 14/362 (3%)
Query: 70 REIDEIVKILDRIAQGDLSVE--------DKEIGGMGAKVRQGIEDLRKSISQLVLNIKN 121
+ I + + + +AQGD + + E+G + + +++S+S ++ N+
Sbjct: 339 KPIKATIDVGNHLAQGDFTKDIPEAYLQRPDEVGD----IARSFNSMKQSLSAMIHNVLK 394
Query: 122 AAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRY-IHDISK 180
A ++ + + E+ + Q+A IN+++ A + E+ + + + M+ + + K
Sbjct: 395 HAEQAAAASQELATSAEETKQTSNQIAVTINEIAEGATGQSEHAASILERMKTTVLEAQK 454
Query: 181 ETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIEN 240
+++ E + + Q A +G + R + ++E++ + E+V+ + E + I +
Sbjct: 455 GQQASIHALELA-NQSNQSALKGEQVTRTTVEHLQEVNAQVRTSVESVKSLGERSEEIGS 513
Query: 241 ITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQ 300
I ISSI++QTNLLALNAAIEAARAGE GKGFAVVA+E+RKLA +S ++A+ I +L+
Sbjct: 514 IVTDISSIADQTNLLALNAAIEAARAGEHGKGFAVVAEEVRKLAAQSAESADKITQLVGG 573
Query: 301 IGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEK 360
I + E V++ +Q V+ E I+E L ++ E + ++ ++ + Q
Sbjct: 574 IQGETKEIVQLIEQNLVSVQRQMEYIQEVGRSLREIVHHTEGTKEQSQDMNSVLTQVLNH 633
Query: 361 IEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKF 420
E L +E +++ E++ A+AEEV+A AEEQS+ ++E+ S L + + L E++SKF
Sbjct: 634 AETVLSSIEEISSIIEQSAASAEEVAAGAEEQSATVEEITNSSTNLAHMAEELNEEVSKF 693
Query: 421 KL 422
KL
Sbjct: 694 KL 695
>sp|Q48318|HTR5_HALSA HALOBACTERIAL TRANSDUCER PROTEIN V >gi|11277601|pir||T46811
halobacterial transducer protein V [imported] -
Halobacterium salinarum >gi|1435132|emb|CAA64842.1|
(X95589) halobacterial transducer protein V
[Halobacterium salinarum] >gi|10581214|gb|AAG19985.1|
(AE005080) Htr7 transducer; Htr7 [Halobacterium sp.
NRC-1]
Length = 545
Score = 169 bits (424), Expect = 5e-41
Identities = 98/370 (26%), Positives = 199/370 (53%), Gaps = 6/370 (1%)
Query: 58 SADIEEYEKQLQREIDEIVKILDRIAQGDLS--VEDKEIGGMGAKVRQGIEDLRKSISQL 115
SA+IE+ L+ + E+ L+ + GDL+ V+ A+V + D+ ++ +
Sbjct: 156 SAEIEQLAADLESQATEVGATLEAASDGDLTARVDATTDNAEIAEVATVVNDMLTTMERT 215
Query: 116 VLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYI 175
+ I+ + +V ++ +++ D+ Q V+E++ +++ ++E + + + M
Sbjct: 216 IDEIQGFSTNVTTASREATAGAKEIQDASQTVSESVQEIAAGTDDQREQLESVAEEMDSY 275
Query: 176 HDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMG 235
+E +T + + + +A G + A D I+ + M+ V + ++
Sbjct: 276 SATVEEVAATAQSVADTAADTTDVATAGKQTAEDAIDAIDAVQETMQTTVANVDALEDLT 335
Query: 236 KSIENITNVISSISEQTNLLALNAAIEAARAGEAG----KGFAVVADEIRKLAEESKKAA 291
I++I +IS I+EQTN+LALNA IEAARAG G GFAVVADE+++LA ES+++A
Sbjct: 336 TEIDDIAELISDIAEQTNMLALNANIEAARAGSGGGSNGDGFAVVADEVKELATESQRSA 395
Query: 292 EDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELR 351
+DI ELI+++ + +VE + + V ++E+V V E ++E E+
Sbjct: 396 KDIAELIEEVQSQTATTVEEIRVAEQRVNDGAAAVEETVDAFGAVTENIQETTDGVQEIS 455
Query: 352 EKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVD 411
+ + ++ ++ E + ++++A ++ T AE VSAA+EEQ++++ E+ S++ L D
Sbjct: 456 QAMDEQAQRSERVVSSVDDIATISQATADRAENVSAASEEQTASITEVTSSLQSLAAQAD 515
Query: 412 VLMEQISKFK 421
L +++++F+
Sbjct: 516 TLEDRLNEFR 525
>gi|11498639 methyl-accepting chemotaxis protein (tlpC-1) [Archaeoglobus
fulgidus] >gi|7483867|pir||B69379 methyl-accepting
chemotaxis protein (tlpC-1) homolog - Archaeoglobus
fulgidus >gi|2649560|gb|AAB90209.1| (AE001032)
methyl-accepting chemotaxis protein (tlpC-1)
[Archaeoglobus fulgidus]
Length = 677
Score = 168 bits (422), Expect = 8e-41
Identities = 111/415 (26%), Positives = 225/415 (53%), Gaps = 42/415 (10%)
Query: 23 IPAVFNSIPGAIVGGIVGVGIASYINYKGETKVKVSADIEEYEKQLQREIDEIV----KI 78
+P + + IP + G +VGV + + DI E ++ ++EI+E++ +
Sbjct: 255 VPVLVSCIPVYVDGEMVGV-------------IDLFTDITELREK-EKEIEEMLAYTGRC 300
Query: 79 LDRIAQGDLSVEDKEIGGMGAKVR--------QGIEDLRKSISQLVLNIKNAAIDVRNHT 130
L+ ++ G ++ + K+R + + + ++V + + + N
Sbjct: 301 LNMLSNGIRELQAGNLDVRLEKIRDDEFGETFEAFNEFAGRMQEIVRKLADDMKETANQV 360
Query: 131 KVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFE 190
+ E + Q+ +QQ++ A Q++ ++ + T ++ +I +E + +E
Sbjct: 361 REAAEAVNQMNAGMQQISSASQQIATGSENLSRLANASTLDLKAAEEIFRELAAKADESN 420
Query: 191 ASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISE 250
+ A+ ++ ++G +A + I+ I + +E + V + + ++I +T I SI++
Sbjct: 421 RQVEAAAERSRIAEQEGGRALEIIKSIVQEVENASKVVETLEQAVRNIGKVTERIKSIAD 480
Query: 251 QTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVE 310
QTNLLALNAAIEAARAGE G+GFAVVADE+RKLAEES+K+ E+I E+++ + ++ + +E
Sbjct: 481 QTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEESRKSTEEIDEIVRNVQEETRKVIE 540
Query: 311 VTQ-------QGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEG-EKIE 362
T QG+E ++ + + E + + ++ +M++ + KA +EG KIE
Sbjct: 541 ATNKVKESSLQGSEGIEAAIKQAGEILGAINRINDMVKAVASKA--------EEGLAKIE 592
Query: 363 EGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQI 417
+ R E +A++AEE A++EE SAA EEQ++A+Q++ ++++++ + + ++ I
Sbjct: 593 QLARNFEEVASTAEENAASSEETSAAIEEQTAAVQQVSIAMEKVNEIANATLQTI 647
>gb|AAG19968.1| (AE005078) Htr17 transducer; Htr17 [Halobacterium sp. NRC-1]
Length = 536
Score = 168 bits (421), Expect = 1e-40
Identities = 94/379 (24%), Positives = 202/379 (52%), Gaps = 16/379 (4%)
Query: 56 KVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGA--KVRQGIEDLRKSIS 113
K+ E + QL ++ E ++++ A GDL+V A +V Q ++ +
Sbjct: 143 KLQERAAERDAQLSKKASEYSSVMEKAASGDLTVRANSSSDSDAMTEVGQAFNEMIAAFE 202
Query: 114 QLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMR 173
++V + A DV ++++ + +++++ + +QVAE++ ++S RE ++ TD ++
Sbjct: 203 EMVARTREFAGDVADNSRDIHASVDEIEAASEQVAESVQEISAGTDREHTRLADATDELQ 262
Query: 174 YIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAAD-------QIEEISRMMEKIEE 226
+ +EE AS ++A ++ + ++GRQ +D Q+ +I E +
Sbjct: 263 SLS-------GAVEEVAASASQVADVSDQAADRGRQGSDDAAAAVTQMTDIQSETEAVVS 315
Query: 227 TVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEE 286
+A + I + ++I+ I++QT+LLALNA+IEAARA + G GFAVVA E+++LAEE
Sbjct: 316 EANALAAEAQEIRRVVDLINDITDQTHLLALNASIEAARADQDGDGFAVVAAEVKELAEE 375
Query: 287 SKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVK 346
+ +A ++I L+ + V+ ++Q A V + TE ++ +++ L ++ + + ++
Sbjct: 376 TNEATDEIETLVDNLLSSTQSVVDDSEQMAATVSSGTETVENALTALEEIGDHVTDVNEA 435
Query: 347 ASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKEL 406
++ + + + + +E + +E+ ++ A VSAAA++Q+++L ++ + V L
Sbjct: 436 VQQIDDATDAQAASADTTVSMIEEIEDISEQNSSEAASVSAAAQQQTASLSDVTDGVTRL 495
Query: 407 DRLVDVLMEQISKFKLSKD 425
D L + ++ F + D
Sbjct: 496 VDRADTLQDVLTGFTVDSD 514
>sp|P42259|HTR2_NATPH SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (METHYL-ACCEPTING
PHOTOTAXIS PROTEIN II) (MPP-II) >gi|1361920|pir||S55299
sensory rhodopsin II transducer protein -
Natronobacterium pharaonis >gi|510869|emb|CAA84468.1|
(Z35086) sensory rhodopsin II transducer [Natronomonas
pharaonis]
Length = 534
Score = 166 bits (415), Expect = 5e-40
Identities = 108/367 (29%), Positives = 197/367 (53%), Gaps = 16/367 (4%)
Query: 62 EEYEKQLQREIDEIVKILDRIAQGDLSVE-DKEIGGMGAKVRQG-IEDLRKSISQLVLNI 119
EE +LQ E + +++DR A GD + D E + +G ++ I LV I
Sbjct: 153 EEINTELQAEAERFGEVMDRCADGDFTQRLDAETDNEAMQSIEGSFNEMMDGIEALVGRI 212
Query: 120 KNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDIS 179
+ A V + ++ N E V ++ + V A+ +S A + E + ++ M D+S
Sbjct: 213 ERFADAVSEDAEAVRANAESVMEASEDVNRAVQNISDAAGDQTETVQQIALEM---DDVS 269
Query: 180 KETVSTMEEFEASMREMAQLAK---EGGEKGRQAADQ-IEEISRMMEKIEETVRGVAEMG 235
+T EE AS ++A+ A+ E GE GR+ A+ I E++ + + E+ V + E+
Sbjct: 270 ----ATTEEVAASADDIAKTARQAAETGEAGRETAETAITEMNEVESRTEQAVASMEELN 325
Query: 236 KSIENITNV---ISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAE 292
+ + I V I+ I+EQTN+LALNA+IEAARA +GFAVVADE++ LAEE+K A E
Sbjct: 326 EDVREIGEVSEMIADIAEQTNILALNASIEAARADGNSEGFAVVADEVKALAEETKAATE 385
Query: 293 DIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELRE 352
+I +LI + D+ +V+ ++ ++ V E ++++V L ++ + +E E+ +
Sbjct: 386 EIDDLIGTVQDRTQTTVDDIRETSDQVSEGVETVEDTVDALERIVDSVERTNDGIQEINQ 445
Query: 353 KVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDV 412
+ + ++ +E++AA++E+T + AE + E Q+ +++E+ + + L D
Sbjct: 446 STDAQADAAQKATTMVEDMAATSEQTASDAETAAETTETQAESVKEVFDLIDGLSEQADS 505
Query: 413 LMEQISK 419
L E +S+
Sbjct: 506 LSETLSR 512
>dbj|BAB07619.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 579
Score = 166 bits (415), Expect = 5e-40
Identities = 108/365 (29%), Positives = 187/365 (50%), Gaps = 29/365 (7%)
Query: 72 IDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTK 131
+ E K+ IA+G+L+VE ++ K R I DL S + +V N++ ++V N+ +
Sbjct: 230 VSEAAKV---IAEGNLTVEPLKV-----KNRDEIGDLAASFNLMVENLRKIILEVGNNAE 281
Query: 132 VMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEA 191
+ + EQ+ S ++ ++ Q+ Q + + + + Y H I + + +
Sbjct: 282 QVAASSEQLTASAEETSKITEQIVSTVQTVTQGVDNQVEKVEYTHKIVGDMSEDIRKIAE 341
Query: 192 SMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEM-------GKSIENITNV 244
+ +E++ + E EK IE + + M I ++V G+ E+ K I I V
Sbjct: 342 NAKEVSTTSMEASEKSSAGKQVIETLVKQMTLINQSVSGLDEIIKGMRDNSKEINQIVKV 401
Query: 245 ISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDK 304
I+ IS+QTNLLALNAAIEAARAGEAGKGF+VVADE+RKLAE++ +A+ I LI + +
Sbjct: 402 ITEISDQTNLLALNAAIEAARAGEAGKGFSVVADEVRKLAEQTSLSAKQISNLISNVQKE 461
Query: 305 IGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELR---EKVIQEGEKI 361
T Q + ++T+TE + + E E + SE+ + V +K+
Sbjct: 462 -------TDQAVQSMETTTEEVVSGMGLADTAGESFEHINQTVSEVTRQIQNVSDSVQKV 514
Query: 362 EEGLR----FLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQI 417
G R ++ + +E + EV+A+ EEQ + ++E+ + L ++ + L E I
Sbjct: 515 ATGTRQMVETIDIVNDVSESSAKGMNEVAASTEEQMATMEEVAAASATLAKMAEELQELI 574
Query: 418 SKFKL 422
+FK+
Sbjct: 575 GRFKV 579
>pir||T44989 transducer protein trII [imported] - Haloarcula vallismortis
>gi|5921503|emb|CAB56464.1| (AJ249640) trII protein
[Haloarcula vallismortis]
Length = 773
Score = 164 bits (412), Expect = 1e-39
Identities = 104/367 (28%), Positives = 199/367 (53%), Gaps = 10/367 (2%)
Query: 60 DIEEYEKQLQREIDEIVKILDRIAQGDLS--VEDKEIGGMGAKVRQGIEDLRKSISQLVL 117
++E L+ + + LD A GDL+ V+ + A+V + I ++ +
Sbjct: 392 EMEALTGHLELKAQQYSDALDAAANGDLTARVKTDSMNDAMAEVGEDINTTLDALEDTIA 451
Query: 118 NIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHD 177
++K A +V + + N E+V + +QV+++IN++ + E + M+ +
Sbjct: 452 DMKAFATNVIQSSDRVNSNAERVDRASKQVSKSINEIFEGTTEQNEGLESAAAEMQNLSA 511
Query: 178 ISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQ-IEEISRMMEKIEETVRGVAEMGK 236
+++ S+ ++ + + +Q A + GE GR+AA + I E+S + + ETV + +
Sbjct: 512 TAQQVASSAQQ----VADTSQSAAKVGEDGREAAQEAIAEMSAIEAETGETVEEINALDD 567
Query: 237 SIENI---TNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAED 293
++ I VI+SI EQTN+LALNA+IEAA A G+GFAVVADEI+ LAEE+K+AA D
Sbjct: 568 ELDEIGEIVGVITSIVEQTNMLALNASIEAAHADGDGEGFAVVADEIKGLAEETKEAAAD 627
Query: 294 IRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREK 353
I I+ I ++ G++VE + + + ++E+V L + E EE++ E+
Sbjct: 628 IEGRIEAIQEQAGDTVETMESTSTRITEGVSTVEETVDALETIVEYTEEVDTGIQEIDRA 687
Query: 354 VIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVL 413
++ ++ + +++L +++T A+ V+ AA++QS++++E+ +S EL + D L
Sbjct: 688 TEEQARTAQDVMGTIDDLTTISQQTATEADTVAGAAQDQSASIEEVSDSATELRQRADDL 747
Query: 414 MEQISKF 420
+ +F
Sbjct: 748 ESLLDRF 754
>sp|P42258|HTR2_HALVA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (METHYL-ACCEPTING
PHOTOTAXIS PROTEIN II) (MPP-II) >gi|1364151|pir||S55296
sensory rhodopsin II transducer protein - Haloarcula
vallismortis (fragment) >gi|516322|emb|CAA84549.1|
(Z35308) transducer of sensory rhodopsin II [Haloarcula
vallismortis]
Length = 433
Score = 164 bits (412), Expect = 1e-39
Identities = 104/367 (28%), Positives = 199/367 (53%), Gaps = 10/367 (2%)
Query: 60 DIEEYEKQLQREIDEIVKILDRIAQGDLS--VEDKEIGGMGAKVRQGIEDLRKSISQLVL 117
++E L+ + + LD A GDL+ V+ + A+V + I ++ +
Sbjct: 52 EMEALTGHLELKAQQYSDALDAAANGDLTARVKTDSMNDAMAEVGEDINTTLDALEDTIA 111
Query: 118 NIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHD 177
++K A +V + + N E+V + +QV+++IN++ + E + M+ +
Sbjct: 112 DMKAFATNVIQSSDRVNSNAERVDRASKQVSKSINEIFEGTTEQNEGLESAAAEMQNLSA 171
Query: 178 ISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQ-IEEISRMMEKIEETVRGVAEMGK 236
+++ S+ ++ + + +Q A + GE GR+AA + I E+S + + ETV + +
Sbjct: 172 TAQQVASSAQQ----VADTSQSAAKVGEDGREAAQEAIAEMSAIEAETGETVEEINALDD 227
Query: 237 SIENI---TNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAED 293
++ I VI+SI EQTN+LALNA+IEAA A G+GFAVVADEI+ LAEE+K+AA D
Sbjct: 228 ELDEIGEIVGVITSIVEQTNMLALNASIEAAHADGDGEGFAVVADEIKGLAEETKEAAAD 287
Query: 294 IRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREK 353
I I+ I ++ G++VE + + + ++E+V L + E EE++ E+
Sbjct: 288 IEGRIEAIQEQAGDTVETMESTSTRITEGVSTVEETVDALETIVEYTEEVDTGIQEIDRA 347
Query: 354 VIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVL 413
++ ++ + +++L +++T A+ V+ AA++QS++++E+ +S EL + D L
Sbjct: 348 TEEQARTAQDVMGTIDDLTTISQQTATEADTVAGAAQDQSASIEEVSDSATELRQRADDL 407
Query: 414 MEQISKF 420
+ +F
Sbjct: 408 ESLLDRF 414
>gb|AAG19270.1| (AE005023) Htr18 transducer; Htr18 [Halobacterium sp. NRC-1]
Length = 790
Score = 163 bits (408), Expect = 4e-39
Identities = 95/370 (25%), Positives = 194/370 (51%), Gaps = 4/370 (1%)
Query: 60 DIEEYEKQLQREIDEIVKILDRIAQGDLSVE---DKEIGGMGAKVRQGIEDLRKSISQLV 116
+ E L+ + +I + ++ A GDL+ D + M A + + L + + +
Sbjct: 391 EAEALAAALESQAQDIRETVEHAADGDLTQRLETDTDHESMAA-IATALNSLLEELEGTI 449
Query: 117 LNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIH 176
I+ + DV + + + E+V + QV+E++ ++S +A+++ + ++D M +
Sbjct: 450 HRIQRFSKDVAESSDHITTSAEEVKRASGQVSESVQEMSADARQQNGIVQDVSDEMTDLS 509
Query: 177 DISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGK 236
+E S+ +E A + + + G + + A +++ + ++ + + +
Sbjct: 510 ATIEEIASSSDEVAAKSNDAVSVGQSGRARSQDAIEEMNAVDEQAKRTIAEMEALDDEMT 569
Query: 237 SIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRE 296
I I +I I+EQT++LALNA+IEAARAGEAG+GFAVVADEI+ L++E+ +A ++I
Sbjct: 570 EIGEIVTLIDDIAEQTSMLALNASIEAARAGEAGEGFAVVADEIKSLSKETTEATQEIES 629
Query: 297 LIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQ 356
LI + D ++V Q+ + + + ++V + + E +EE + +
Sbjct: 630 LIADVQDSTTDAVTDMQEMGDRLSEGKSTVTDTVETIDTIVERIEEANGGVQTINTATDE 689
Query: 357 EGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQ 416
+ EE + ++ + + +++TTA AE+ +AAAEEQ+++L E+ +++L L E
Sbjct: 690 QATTTEEVVTMVDEVGSISDDTTARAEDAAAAAEEQTASLTEVTNRIQDLSDQSTDLYEL 749
Query: 417 ISKFKLSKDH 426
+S F + +DH
Sbjct: 750 LSDFTVREDH 759
>sp|P39216|TLPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPA >gi|1075830|pir||C54078
methyl-accepting chemotaxis protein tlpA - Bacillus
subtilis >gi|459689|gb|AAA20555.1| (L29189)
transmembrane receptor [Bacillus subtilis]
>gi|2635609|emb|CAB15103.1| (Z99119) methyl-accepting
chemotaxis protein [Bacillus subtilis]
>gi|2635621|emb|CAB15114.1| (Z99120) methyl-accepting
chemotaxis protein [Bacillus subtilis]
Length = 662
Score = 162 bits (406), Expect = 6e-39
Identities = 97/361 (26%), Positives = 195/361 (53%), Gaps = 3/361 (0%)
Query: 66 KQLQREIDEIVKILDRIAQGDLS--VEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAA 123
+ + + + IV ++I++GDL+ +E +G + + + S+ L+ IK++
Sbjct: 303 RSITKPLRRIVASAEKISEGDLTETIEINSKDELGV-LSESFNHMAHSLRSLIHGIKDSV 361
Query: 124 IDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETV 183
V + ++ + + +Q + + + + AI Q S ++ + E I T+ + ++D E
Sbjct: 362 EHVASSSEELTASADQTSRATEHITMAIEQFSNGSESQSEKIETTTEQINEMNDGLAELA 421
Query: 184 STMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITN 243
+ + +++ +G ++ A Q+ I ++ E+ V+G+ K I NI
Sbjct: 422 RAAAVITETSADSTEVSSKGETLVQKTAGQMNTIDHSVKAAEQVVKGLEIKSKDITNILR 481
Query: 244 VISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGD 303
VI+ I++QTNLLALNAAIEAARAGE G+GF+VVA+E+RKLA +S +A++I LI +I
Sbjct: 482 VINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIESLISEIVK 541
Query: 304 KIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEE 363
+I S+ V Q + V+T + E+ +++M ++ + + V + +E
Sbjct: 542 EIHTSLNVLQSVNKEVETGLVMTDETKQSFKHISQMTNQIASELQNMNATVEELSAGAQE 601
Query: 364 GLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKLS 423
++ A ++E++ ++++A+AEEQ ++++E+ S L+R+ + L + +FK+
Sbjct: 602 ISAASNDITAISKESSDGIQDIAASAEEQLASMEEISSSALTLERMSEELRDLTKQFKVD 661
Query: 424 K 424
K
Sbjct: 662 K 662
>pir||T44938 transducer protein htpV [similarity] - Halobacterium salinarum
>gi|1621047|gb|AAB17519.1| (U53365) transducer HtI
protein [Halobacterium salinarum]
Length = 544
Score = 161 bits (404), Expect = 1e-38
Identities = 95/368 (25%), Positives = 196/368 (52%), Gaps = 6/368 (1%)
Query: 60 DIEEYEKQLQREIDEIVKILDRIAQGDLS--VEDKEIGGMGAKVRQGIEDLRKSISQLVL 117
+IE+ L+ + E+ L+ + GDL+ V+ A+V + D+ ++ + +
Sbjct: 157 EIEQLAADLESQATEVGATLEAASDGDLTARVDATTDNAEIAEVATVVNDMLTTMERTID 216
Query: 118 NIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHD 177
I+ + +V ++ +++ + Q V+E++ +++ ++E + + + M
Sbjct: 217 EIQGFSTNVTTASREATGGAKEIQVASQTVSESVQEIAAGTDDQREQLESVAEEMDSYSA 276
Query: 178 ISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKS 237
+E +T + + + +A G + A D I+ + M+ V + ++
Sbjct: 277 TVEEVAATAQSVADTAADTTDVATAGKQTAEDAIDAIDAVQETMQTTVANVDALEDLTTE 336
Query: 238 IENITNVISSISEQTNLLALNAAIEAARAGEAG----KGFAVVADEIRKLAEESKKAAED 293
I++I +IS I+EQTN+LALNA IEAARAG G GFAVVADE+++LA ES+++A+D
Sbjct: 337 IDDIAELISDIAEQTNMLALNANIEAARAGSGGGTNGDGFAVVADEVKELATESQRSAKD 396
Query: 294 IRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREK 353
I ELI+++ + +VE + + V ++E+V V E ++E E+ +
Sbjct: 397 IAELIEEVQSQTATTVEEIRVAEQRVNDGAAAVEETVDAFGAVTENIQETTDGVQEISQA 456
Query: 354 VIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVL 413
+ ++ ++ E + ++++A ++ T AE VSAA+EEQ++++ E+ S++ L D L
Sbjct: 457 MDEQAQRSERVVSSVDDIATISQATADRAENVSAASEEQTASITEVTGSLQSLAAQADTL 516
Query: 414 MEQISKFK 421
+++++F+
Sbjct: 517 EDRLNEFR 524
>sp|P39217|TLPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPB >gi|1075831|pir||D54078
methyl-accepting chemotaxis protein tlpB - Bacillus
subtilis >gi|459691|gb|AAA20557.1| (L29189)
transmembrane receptor [Bacillus subtilis]
>gi|2635607|emb|CAB15101.1| (Z99119) methyl-accepting
chemotaxis protein [Bacillus subtilis]
>gi|2635619|emb|CAB15112.1| (Z99120) methyl-accepting
chemotaxis protein [Bacillus subtilis]
Length = 662
Score = 161 bits (403), Expect = 1e-38
Identities = 98/362 (27%), Positives = 192/362 (52%), Gaps = 9/362 (2%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSV-----EDKEIGGMGAKVRQGIEDLRKSISQLVLNIK 120
+ + + + ++V +I+ GDL+ E G +G + LR I + +++
Sbjct: 303 RAITKPLRKLVSTSAKISSGDLTEVIDIHSKNEFGQLGESFNEMSASLRSVIGVIQTSVE 362
Query: 121 NAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISK 180
N A + ++ + + Q + + + + AI Q S + + E + ++ + +++
Sbjct: 363 NVA----SSSEELTASAAQTSKATEHITLAIEQFSDGNEAQSEKLETSSNHLSQMNEGIS 418
Query: 181 ETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIEN 240
+ S + ++ A G + Q++ I + ++K E V+G+ + I +
Sbjct: 419 KVAQASSTITKSSIQSSEAAGSGEKLVEHTVGQMKTIDQSVQKAEAVVKGLETKSQDITS 478
Query: 241 ITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQ 300
I NVI+ I++QTNLLALNAAIEAARAGE G+GF+VVA+E+RKLA +S +A++I LI++
Sbjct: 479 ILNVINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIEGLIQE 538
Query: 301 IGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEK 360
I +I S+ + Q VK ++ ++ Q+ EM ++ + L V Q
Sbjct: 539 IVREISTSLSMFQSVNHEVKEGLQITDQTAESFKQIYEMTTQISGELQNLNATVEQLSAG 598
Query: 361 IEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKF 420
+E +E+++A A+E++A ++++A+AEEQ ++++E+ S + L + + L + KF
Sbjct: 599 SQEVSSAVEDISAVAKESSAGIQDIAASAEEQLASMEEISSSAETLANMAEELQDITKKF 658
Query: 421 KL 422
K+
Sbjct: 659 KI 660
>pir||A72428 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4980507|gb|AAD35117.1|AE001690_11 (AE001690)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 656
Score = 159 bits (397), Expect = 7e-38
Identities = 114/401 (28%), Positives = 214/401 (52%), Gaps = 46/401 (11%)
Query: 43 IASYINYKGETKVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVR 102
I +Y+ + G + + K+++++++++ R +GDL+VE + AK +
Sbjct: 280 IVTYVVFGGVIFAVLFVSMMPVVKRMRQQVEKV----KRFGEGDLTVEFE------AKGK 329
Query: 103 QGIEDLRKSISQLVLNIKNAAIDVRNHTKVMK---ENIEQVADSVQQVAEAINQVSIEAQ 159
+ + +S+ + VL++K + + +K + E I+ +++ +++E +++ + +
Sbjct: 330 DELTQIEESLKEAVLSLKEMIVSIIEASKELSGASEEIKVLSEESHKMSENLHEEAKKIL 389
Query: 160 REQENISK--------MTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAA 211
E N+S + + +ISK T E EA + + A+EG E+
Sbjct: 390 DEANNMSSALTEVTSGVEEVAASAQNISKITQDLTERSEA----VTKAAREGTERVEAVG 445
Query: 212 DQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGK 271
I ++ E+ + +R + + K+I I + ISSI+EQTNLLALNAAIEAARAGEAG+
Sbjct: 446 GVINKLKGSAERQRDYLRELVDSAKTIGEIVDTISSIAEQTNLLALNAAIEAARAGEAGR 505
Query: 272 GFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVS 331
GFAVVADEIRKLAEES++A EDI +++ + ++E + G+ KE
Sbjct: 506 GFAVVADEIRKLAEESQRATEDIAKML----SSLRATIEHVENGS----------KEMFE 551
Query: 332 YLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEE 391
+ ++A M EE+ + E+ +IEE +EN AA+A+E AAAEE+++A +
Sbjct: 552 GVDEIAVMGEEVTKRFREIL-------GRIEEINSMIENTAATAQEQGAAAEEMASAMDN 604
Query: 392 QSSALQELRESVKELDRLVDVLMEQISKFKLSKDHESQVKK 432
+ ++ + ES+ ++ L++ E ++ + + S++ +
Sbjct: 605 VTKIVEGVVESLNRMESLIEDQTESAARVSEAAERLSELSE 645
>pir||C72291 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981690|gb|AAD36219.1|AE001771_12 (AE001771)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 530
Score = 158 bits (395), Expect = 1e-37
Identities = 110/362 (30%), Positives = 195/362 (53%), Gaps = 33/362 (9%)
Query: 70 REIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNH 129
R + +++ + DL++ +E G ++ + + + SI L N+K DV+
Sbjct: 176 RLLKPVMEASRSLRNNDLTINIQEAKGKD-EISTLLNEFKASIEYLRNNLK----DVQTE 230
Query: 130 TKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEF 189
T + E+IE+++ + +++ + +S +E +NIS ++ I +ET + EE
Sbjct: 231 TFSVAESIEEISKANEEITNQLLGIS----KEMDNISTRIES---ISASVQETTAGSEEI 283
Query: 190 EASMREMA--------------QLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMG 235
++ + +A QLAKE G+ ++ + IS + +E V +
Sbjct: 284 SSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGA 343
Query: 236 KSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIR 295
+ I + I++I+EQTNLLALNAAIEAARAGEAG+GFAVVADEIRKLAEES++A+E++R
Sbjct: 344 EEITSFVETINAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESQQASENVR 403
Query: 296 EL---IKQIGDKIGE-SVEVT---QQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKAS 348
+ I+ I + G+ S E+T ++G ++ + E + V + ++ EM++ +
Sbjct: 404 RVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERINEMLQNIAAAIE 463
Query: 349 ELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDR 408
E V + + E + E + S +E A +E+SA+ EE +S +Q +RE+V+ L
Sbjct: 464 EQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQTIRENVQMLKE 523
Query: 409 LV 410
+V
Sbjct: 524 IV 525
>pir||E72379 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4980935|gb|AAD35514.1|AE001721_13 (AE001721)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 656
Score = 157 bits (394), Expect = 2e-37
Identities = 112/395 (28%), Positives = 212/395 (53%), Gaps = 34/395 (8%)
Query: 43 IASYINYKGETKVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMG-AKV 101
I +Y+ + G + + K+++++++++ R +GDL+VE + G ++
Sbjct: 280 IVTYVVFGGVIFAVLFVSMMPVVKRMRQQVEKV----KRFGEGDLTVEFEAKGRDELTQI 335
Query: 102 RQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQRE 161
+ +++ S+ +++++I AA ++ ++ +K E+ + + E ++ EA
Sbjct: 336 EESLKEAALSLKEMIVSIIEAAKELSGASEEIKVLSEESHKMSENLHEEAKKILDEANNM 395
Query: 162 QENISKMTDTMRYI----HDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEI 217
++++T + + +ISK T E EA + + A+EG E+ I ++
Sbjct: 396 SSALTEVTSGVEEVAASAQNISKITQDLTERSEA----VTKAAREGTERVEAVGGVINKL 451
Query: 218 SRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVA 277
E+ + +R + + K+I I + ISSI+EQTNLLALNAAIEAARAGEAG+GFAVVA
Sbjct: 452 KGSAERQRDYLRELVDSAKTIGEIVDTISSIAEQTNLLALNAAIEAARAGEAGRGFAVVA 511
Query: 278 DEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVA 337
DEIRKLAEES++A EDI +++ + ++E + G+ KE + ++A
Sbjct: 512 DEIRKLAEESQRATEDIAKML----SSLRTTIEHVENGS----------KEMFEGVDEIA 557
Query: 338 EMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQ 397
M EE+ + E+ +IEE +EN AA+A+E AAAEE+++A + + ++
Sbjct: 558 VMGEEVTKRFREIL-------GRIEEINSMIENTAATAQEQGAAAEEMASAMDNVTKIVE 610
Query: 398 ELRESVKELDRLVDVLMEQISKFKLSKDHESQVKK 432
+ ES+ ++ L++ +K + + S++ +
Sbjct: 611 GVVESLNRMESLIEDQTTSAAKVSQAAERLSELSE 645
>gb|AAG18922.1| (AE004994) Htr14 transducer; Htr14 [Halobacterium sp. NRC-1]
Length = 627
Score = 157 bits (394), Expect = 2e-37
Identities = 117/424 (27%), Positives = 219/424 (51%), Gaps = 35/424 (8%)
Query: 24 PAVFNSIPGAIVGGIVGVGIASYINYKGETKVKVS------ADIEEYEKQLQREIDEIVK 77
PA+ S+PGA I + S Y E + K + A++E +QL+ +D + +
Sbjct: 145 PALDESVPGAFGESITEMA-DSLEAYTAELEDKTAELEHQQAELERQSEQLRALVDALSE 203
Query: 78 ILDRIAQGDLSVE-DKEIGGMGAKVRQGIED---LRKSISQLVLNIKNAAIDVRNHTKVM 133
D GDL+ D + R +ED L ++++ + +I++ + V ++
Sbjct: 204 ATDAARAGDLTATVDAAALDVTDDHRAAVEDFNQLLETLADTISDIQSFSDAVLAVSRTT 263
Query: 134 KENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVS-TMEEFEAS 192
E ++ VAD V+E++ +++ A ++ ++ + M +TVS T+EE AS
Sbjct: 264 DERVDAVADRSAAVSESVTEIADGANQQTNQLNNIAAEM--------DTVSATVEEIAAS 315
Query: 193 MREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKS-------IENITNVI 245
++A+ A+ ++G ++EE + + E + VAE +S I+ IT +I
Sbjct: 316 ANDVAKTAQAAADRGEDGRGEVEETIEALRALREQSQAVAETVESLAAEVERIDGITALI 375
Query: 246 SSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKI 305
I+E+TN+LALNA+IEAAR G G GFAVVADE++ LAEE+++ A DI E++ + +K
Sbjct: 376 EDIAEETNMLALNASIEAARTGSDGDGFAVVADEVKDLAEETREQAADISEIVDAVTEKA 435
Query: 306 GE-SVEVTQQGAEVVKTSTE---VIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKI 361
+ S+ + + AEV + T+ V+++ + + +VA + ++ E+ + Q + +
Sbjct: 436 EDASIAIGEVDAEVERKITKAEGVLRDFEAIVDEVANVNHAVQ----EISDATDQGAQSV 491
Query: 362 EEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFK 421
+ + +E +A+ +EET A ++ V+ A EQ+ A E+ + + EL L + F
Sbjct: 492 TDVVGMVEEVASVSEETAAESDTVADNAAEQTDATDEVADQMDELAEQTAALAGMLDDFT 551
Query: 422 LSKD 425
+ D
Sbjct: 552 VPAD 555
>pir||G72316 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981455|gb|AAD35999.1|AE001756_2 (AE001756)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 661
Score = 157 bits (392), Expect = 3e-37
Identities = 112/395 (28%), Positives = 212/395 (53%), Gaps = 34/395 (8%)
Query: 43 IASYINYKGETKVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMG-AKV 101
I +Y+ + G + + K+++++++++ R +GDL+VE + G ++
Sbjct: 285 IVTYVVFGGVIFAVLFVSMMPVVKRMRQQVEKV----KRFGEGDLTVEFEAKGEDELTQI 340
Query: 102 RQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQRE 161
+ +++ S+ +++++I AA ++ ++ +K E+ + + E ++ EA
Sbjct: 341 EESLKEAVLSLKEMIVSIIEAAKELSGASEEIKVLSEESHKMSENLHEEAKKILDEANNM 400
Query: 162 QENISKMTDTMRYI----HDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEI 217
++++T + + +ISK T E EA + + A+EG E+ I ++
Sbjct: 401 SSALTEVTSGVEEVAASAQNISKITQDLTERSEA----VTKAAREGTERVEAVGGVINKL 456
Query: 218 SRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVA 277
E+ + +R + + K+I I + ISSI+EQTNLLALNAAIEAARAGEAG+GFAVVA
Sbjct: 457 KGSAERQRDYLRELVDSAKTIGEIVDTISSIAEQTNLLALNAAIEAARAGEAGRGFAVVA 516
Query: 278 DEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVA 337
DEIRKLAEES++A EDI +++ + ++E + G+ KE + ++A
Sbjct: 517 DEIRKLAEESQRATEDIAKML----SSLRTTIEHVENGS----------KEMFEGVDEIA 562
Query: 338 EMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQ 397
M EE+ + E+ +IEE +EN AA+A+E AAAEE+++A + + ++
Sbjct: 563 VMGEEVTKRFREIL-------GRIEEINSMIENTAATAQEQGAAAEEMASAMDNVTKIVE 615
Query: 398 ELRESVKELDRLVDVLMEQISKFKLSKDHESQVKK 432
+ ES+ ++ L++ +K + + S++ +
Sbjct: 616 GVVESLNRMESLIEDQTTSAAKVSQAAERLSELSE 650
>sp|Q48317|HTR4_HALSA HALOBACTERIAL TRANSDUCER PROTEIN IV >gi|11277608|pir||T46810
halobacterial transducer protein IV [imported] -
Halobacterium salinarum >gi|1435131|emb|CAA64841.1|
(X95589) halobacterial transducer protein IV
[Halobacterium salinarum]
Length = 810
Score = 157 bits (392), Expect = 3e-37
Identities = 99/376 (26%), Positives = 191/376 (50%), Gaps = 11/376 (2%)
Query: 59 ADIEEYEKQLQREIDEIVKILDRIAQGDLS----VEDKEIGGMGAKVRQGIEDLRKSISQ 114
AD E +L+ + + ++ A GDL+ +D + M A + ++
Sbjct: 432 ADAEALAAELEAQAERYSDVMAACADGDLTRRMPADDTDNEAMAA-IAASFNEMLAQWEH 490
Query: 115 LVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRY 174
+++I+ A V ++ + + QV+E++ +++ A ++ + ++ M
Sbjct: 491 TIIDIQEFADAVATASEEAEVGAADAERASGQVSESVQEIAGAADEQRNMLDTVSGEMTD 550
Query: 175 IHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEM 234
+ +E ++ + + A++A++G + A D IE + E I+ TV+ V +
Sbjct: 551 LSAAIEEVAASADSVAEHSHQTAEIARDGEQT---AEDAIERSLSVQEAIDATVQNVEAL 607
Query: 235 GKS---IENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAA 291
I I ++IS I+EQTN+LALNA IEAARA ++G GFAVVADE++ LAEE++++A
Sbjct: 608 DDQMAEISEIVDLISDIAEQTNMLALNANIEAARADKSGDGFAVVADEVKDLAEETQESA 667
Query: 292 EDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELR 351
DI I ++ + +V + E + + ++E V T V++ +E + E+
Sbjct: 668 GDIERRITEVQSQTTATVAEARAAEESMDAGIDAVEEVVDAFTAVSDHADETDTGVQEIS 727
Query: 352 EKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVD 411
+ + EE + E +A ++ T A+ VSAAAEEQ++++ E+ +SV+ L +
Sbjct: 728 DTTDDQASSTEEAVSMTEEVADLSDSTAGEAQSVSAAAEEQAASMSEISDSVESLSGQAE 787
Query: 412 VLMEQISKFKLSKDHE 427
L +S+F++ D +
Sbjct: 788 QLKALLSEFEVDADRD 803
>gb|AAG19986.1| (AE005080) Htr5 transducer; Htr5 [Halobacterium sp. NRC-1]
Length = 810
Score = 156 bits (391), Expect = 4e-37
Identities = 99/376 (26%), Positives = 191/376 (50%), Gaps = 11/376 (2%)
Query: 59 ADIEEYEKQLQREIDEIVKILDRIAQGDLS----VEDKEIGGMGAKVRQGIEDLRKSISQ 114
AD E +L+ + + ++ A GDL+ +D + M A + ++
Sbjct: 432 ADAEALAAELEAQAERYSDVMAACADGDLTRRMPADDTDNEAMAA-IAASFNEMLAQWEH 490
Query: 115 LVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRY 174
+++I+ A V ++ + + QV+E++ +++ A ++ + ++ M
Sbjct: 491 TIIDIQEFADAVATASEEAEVGAADAERASGQVSESVQEIAGAADEQRNMLDTVSGEMTD 550
Query: 175 IHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEM 234
+ +E ++ + + A++A++G + A D IE + E I+ TV+ V +
Sbjct: 551 LSAAIEEVAASADSVAEHSHQTAEIARDGEQT---AEDAIERSLTVQEAIDATVQNVEAL 607
Query: 235 GKS---IENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAA 291
I I ++IS I+EQTN+LALNA IEAARA ++G GFAVVADE++ LAEE++++A
Sbjct: 608 DDQMAEISEIVDLISDIAEQTNMLALNANIEAARADKSGDGFAVVADEVKDLAEETQESA 667
Query: 292 EDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELR 351
DI I ++ + +V + E + + ++E V T V++ +E + E+
Sbjct: 668 GDIERRITEVQSQTTATVAEARAAEESMDAGIDAVEEVVDAFTAVSDHADETDTGVQEIS 727
Query: 352 EKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVD 411
+ + EE + E +A ++ T A+ VSAAAEEQ++++ E+ +SV+ L +
Sbjct: 728 DTTDDQAASTEEAVSMTEEVADLSDSTAGEAQSVSAAAEEQAASMSEISDSVESLSGQAE 787
Query: 412 VLMEQISKFKLSKDHE 427
L +S+F++ D +
Sbjct: 788 QLKALLSEFEVDADRD 803
>sp|P39215|MCPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB (H3)
>gi|459688|gb|AAA20554.1| (L29189) transmembrane
receptor [Bacillus subtilis] >gi|2635610|emb|CAB15104.1|
(Z99119) methyl-accepting chemotaxis protein [Bacillus
subtilis] >gi|2635622|emb|CAB15115.1| (Z99120)
methyl-accepting chemotaxis protein [Bacillus subtilis]
Length = 662
Score = 156 bits (391), Expect = 4e-37
Identities = 92/362 (25%), Positives = 200/362 (54%), Gaps = 9/362 (2%)
Query: 66 KQLQREIDEIVKILDRIAQGDLS----VEDK-EIGGMGAKVRQGIEDLRKSISQLVLNIK 120
+ + + + +V+ I++GDL+ + K E+G +G + ++ +S+ L+ I+
Sbjct: 304 RSITKPLKRLVQSSKTISRGDLTETIEIHSKDELGELG----ESFNEMGQSLRSLISAIQ 359
Query: 121 NAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISK 180
N+ +V ++ + + Q + + + + AI Q S + + + + + +++ +
Sbjct: 360 NSVNNVAASSEQLTASAGQTSKATEHITMAIEQFSNGNEEQSRKVESSSHQLNLMNEGLQ 419
Query: 181 ETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIEN 240
+ T + + + ++A G + +Q Q+ I++ +++ E V+G+ K I +
Sbjct: 420 QVSQTSSDITKASIQSTEIAGTGEKFVQQTGGQMNSINQSVQQAEAVVKGLEGKSKDITS 479
Query: 241 ITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQ 300
I VI+ I++QTNLLALNAAIEAARAGE+G+GF+VVA+E+RKLA +S +A++I +LI++
Sbjct: 480 ILRVINGIADQTNLLALNAAIEAARAGESGRGFSVVAEEVRKLAVQSADSAKEIEKLIQE 539
Query: 301 IGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEK 360
I +I S+ + ++ + V++ V + + M E+ K + V Q ++
Sbjct: 540 IVAEIDTSLHMFKEVNQEVQSGLVVTDNTKESFQSIFSMTNEIAGKLQTMNSTVEQLSDR 599
Query: 361 IEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKF 420
+ + +A ++E++A+ ++++A+AEEQ ++++E+ S L ++ + L + +F
Sbjct: 600 SQHVSAAVSGIADVSKESSASIQDIAASAEEQLASMEEISSSATTLAQMAEELRDLTKQF 659
Query: 421 KL 422
K+
Sbjct: 660 KI 661
>gb|AAG19122.1| (AE005010) Htr16 transducer; Htr16 [Halobacterium sp. NRC-1]
Length = 628
Score = 156 bits (390), Expect = 5e-37
Identities = 100/365 (27%), Positives = 191/365 (51%), Gaps = 16/365 (4%)
Query: 68 LQREIDEIVKILDRIAQGDLSVE-DKEIGGMG-AKVRQGIEDLRKSISQLVLNIKNAAID 125
L+R+ + + + A GDL+ D ++ A++ D+ + LV I+ A
Sbjct: 271 LERQAERFSTQMQQAADGDLTQRLDTDVDRESLAQIATAFNDMLVQLEALVDRIQATANA 330
Query: 126 VRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVST 185
V + T M + +++ S VA++I Q+S A+ + E K+T + D+S +T
Sbjct: 331 VDDRTHAMSASTDEIEQSSMSVAKSIEQISAGAENQNE---KLTAAAGEMTDLS----AT 383
Query: 186 MEEFEASMREMAQLAKEG---GEKGRQAA-DQIEEISRMMEKIEETVRGVAEMGKSIENI 241
+EE +S +AQ A++ G+ G+ AA D I E+ + K +TV + + + + I
Sbjct: 384 VEEIASSSNNVAQQAEDAAAMGQDGQAAATDAIAEMDAIESKATQTVEEMQSLQEEVGRI 443
Query: 242 TNVISSISE---QTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELI 298
+++++ I + QT++LA+NA+IEA A +G GFAVVADE++ LAE++ A +++ LI
Sbjct: 444 SDIVTMIDDIASQTDMLAINASIEAENASTSGDGFAVVADEVKSLAEDTATATDEVESLI 503
Query: 299 KQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEG 358
++ E + + V + I ++ + L + + +E+ + + +
Sbjct: 504 AEVEASTSALAEDMYEMRDRVGDGQDTITDTAALLEDIVDRVEDANAGIQSINDATEDQA 563
Query: 359 EKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQIS 418
++E R +E +A+ +++T A VSAAAEEQ+SA+QE+ +S + L L+++
Sbjct: 564 ASVQEATRMVEEVASVSDQTAGEASNVSAAAEEQTSAIQEISQSAQSLQTQATELLDRAE 623
Query: 419 KFKLS 423
+F S
Sbjct: 624 QFDTS 628
>gb|AAC27628.1| (AF076485) defective in fruiting DifA [Myxococcus xanthus]
Length = 413
Score = 155 bits (387), Expect = 1e-36
Identities = 98/358 (27%), Positives = 183/358 (50%), Gaps = 14/358 (3%)
Query: 76 VKILDR----IAQGDLSVEDKEIGGMGAKVRQGIEDL-------RKSISQLVLNIKNAAI 124
VK+L R I+QGDLS K + G R I++L ++++ +LV I+ A
Sbjct: 57 VKVLSRSAYEISQGDLS---KPVAAEGGSKRDEIDELTGAITRMQENLRELVGKIQETAK 113
Query: 125 DVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVS 184
V + ++ + E V S ++V ++ +++ A+ + + +SK + + + + T +
Sbjct: 114 SVADTAIDLQRSAENVNGSTEEVGSSMEKIAGGAESQSQLVSKASKVITEMAGSIQRTTA 173
Query: 185 TMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNV 244
+ E+ + E + A++G + R A D+++++ +E + V E + I I +
Sbjct: 174 SAEDAARTTAETSSAAEDGSKAARLAGDKVKKVFNRIESASQQVFAFGEKTQEISKIVDA 233
Query: 245 ISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDK 304
I+ +++QTNLLALNA IEAARAGE G+GFAVVADE+RKLAE + ++AE I +L + I +
Sbjct: 234 ITQVAQQTNLLALNATIEAARAGEYGRGFAVVADEVRKLAESAGRSAEQISKLARDISGQ 293
Query: 305 IGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEG 364
V ++G + E + V + + + + + K + E ++ + EE
Sbjct: 294 STSVVSAMKEGIAELAEGREDLTNIVRSMGAITDTIRKGSEKVHLISESAREQLKGSEEM 353
Query: 365 LRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKL 422
+ +E + A ++ E + A +EQ++A+ + EL L L + F+L
Sbjct: 354 VTAIEEIKLVARNNASSTEAIQAVIQEQTAAVSRMTSLASELTNLSVELQSVVRSFRL 411
>pir||A54078 methyl-accepting chemotaxis protein mcpB - Bacillus subtilis
Length = 662
Score = 154 bits (386), Expect = 1e-36
Identities = 93/362 (25%), Positives = 197/362 (53%), Gaps = 9/362 (2%)
Query: 66 KQLQREIDEIVKILDRIAQGDLS----VEDK-EIGGMGAKVRQGIEDLRKSISQLVLNIK 120
+ + + + +V+ I++GDL+ + K E+G +G + + LR IS + ++
Sbjct: 304 RSITKPLKRLVQSSKTISRGDLTETIEIHSKDELGELGESFNEMGQSLRSLISAIQDSVN 363
Query: 121 NAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISK 180
N A ++ + + Q + + + + AI Q S + + + + + +++ +
Sbjct: 364 NVAAS----SEQLTASAGQTSKATEHITMAIEQFSNGNEEQSRKVESSSHQLNLMNEGLQ 419
Query: 181 ETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIEN 240
+ T + + + ++A G + +Q Q+ I++ +++ E V+G+ K I +
Sbjct: 420 QVSQTSSDITKASIQSTEIAGTGEKFVQQTVGQMNSINQSVQQAEAVVKGLEGKSKDITS 479
Query: 241 ITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQ 300
I VI+ I++QTNLLALNAAIEAARAGE+G+GF+VVA+E+RKLA +S +A++I +LI++
Sbjct: 480 ILRVINGIADQTNLLALNAAIEAARAGESGRGFSVVAEEVRKLAVQSADSAKEIEKLIQE 539
Query: 301 IGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEK 360
I +I S+ + ++ + V++ V + + M E+ K + V Q ++
Sbjct: 540 IVAEIDTSLHMFKEVNQEVQSGLVVTDNTKESFQSIFSMTNEIAGKLQTMNSTVEQLSDR 599
Query: 361 IEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKF 420
+ + +A ++E++A+ ++++A+AEEQ ++++E+ S L ++ + L + +F
Sbjct: 600 SQHVSAAVSGIADVSKESSASIQDIAASAEEQLASMEEISSSATTLAQMAEELRDLTKQF 659
Query: 421 KL 422
K+
Sbjct: 660 KI 661
>pir||H75002 methyl-accepting chemotaxis protein PAB1026 - Pyrococcus abyssi
(strain Orsay) >gi|5458976|emb|CAB50462.1| (AJ248288)
METHYL-ACCEPTING CHEMOTAXIS PROTEIN [Pyrococcus abyssi]
Length = 374
Score = 154 bits (385), Expect = 2e-36
Identities = 96/324 (29%), Positives = 175/324 (53%), Gaps = 18/324 (5%)
Query: 106 EDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEA----INQVSIEAQRE 161
E++ K ++ + + I+V++ + +KE IE + + + +V +N++ E
Sbjct: 58 EEVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNE 117
Query: 162 QENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGG---EKGRQAAD----QI 214
I+++ D YI +S + +EE ++++ A E EKGRQ +D ++
Sbjct: 118 NVKIAEVND---YIQTLS----AGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKV 170
Query: 215 EEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFA 274
IS ++ + VR +AE K I +I VISSI+ QTNLLALNA+IEAARAGEAG+GFA
Sbjct: 171 SRISETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFA 230
Query: 275 VVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLT 334
VVA+ +R+LA+ SKK+AE+IR LI+++ + I ++ Q+ V + E I+ ++
Sbjct: 231 VVAENVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFD 290
Query: 335 QVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSS 394
+A E EL E + ++ ++ + +++++ + A +++
Sbjct: 291 DIARRANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLE 350
Query: 395 ALQELRESVKELDRLVDVLMEQIS 418
L E++E + +L +D +M +IS
Sbjct: 351 KLNEVKEEITKLKENIDRIMGEIS 374
>pir||T48840 transducer protein basT [validated] - Halobacterium salinarum
>gi|7327959|emb|CAB82572.1| (AJ245950) chemotaxis
transducer protein BasT [Halobacterium salinarum]
Length = 805
Score = 154 bits (385), Expect = 2e-36
Identities = 88/361 (24%), Positives = 189/361 (51%), Gaps = 2/361 (0%)
Query: 62 EEYEKQLQREIDEIVKILDRIAQGDLSVE-DKEIGGMGAK-VRQGIEDLRKSISQLVLNI 119
E ++L+R E + A GDL+ D+++ + + + D+ + + +
Sbjct: 433 ERLNERLERRAAEYSDEMAAAAAGDLTRRLDEDVDSEPMQDIAEAFNDMMGDVEATLAQV 492
Query: 120 KNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDIS 179
++ A V + + + ++ + QV+E++ +S +A ++++ + + D + +
Sbjct: 493 RSIADAVDAASTDVSTSAAEIRSASDQVSESVQDISADADQQRDRLGTVGDEVTSLSATV 552
Query: 180 KETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIE 239
+E ++ ++ ++ + A ++ G E G A ++E I + E V + E +I
Sbjct: 553 EEIAASADDVAETVNQAATESERGQELGEDAVAELERIEATADSAVERVTALEEAVDAIG 612
Query: 240 NITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIK 299
++T VI+ I+EQTN+LALNA IEAARA ++G GFAVVADE++ LA+E K++A +I L+
Sbjct: 613 DVTGVITDIAEQTNMLALNANIEAARADKSGDGFAVVADEVKDLADEVKESATEIETLVD 672
Query: 300 QIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGE 359
+ + ++V + + V +E I+ +++ L + + +E + + ++
Sbjct: 673 DVQADVADTVADMSELGDRVDAGSETIEAALAALDDIGDQVEAANGSVQSISDATDEQAA 732
Query: 360 KIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISK 419
EE + ++ + ++ T +++VSAAAEEQ++++ E+ +LD V L + + +
Sbjct: 733 STEEVVTMIDEVTDLSDRTATESQQVSAAAEEQAASVSEVAGRADDLDDQVSTLNDLLDQ 792
Query: 420 F 420
F
Sbjct: 793 F 793
>gb|AAG20060.1| (AE005085) Htr3 transducer; Htr3 [Halobacterium sp. NRC-1]
Length = 633
Score = 154 bits (385), Expect = 2e-36
Identities = 88/361 (24%), Positives = 189/361 (51%), Gaps = 2/361 (0%)
Query: 62 EEYEKQLQREIDEIVKILDRIAQGDLSVE-DKEIGGMGAK-VRQGIEDLRKSISQLVLNI 119
E ++L+R E + A GDL+ D+++ + + + D+ + + +
Sbjct: 261 ERLNERLERRAAEYSDEMAAAAAGDLTRRLDEDVDSEPMQDIAEAFNDMMGDVEATLAQV 320
Query: 120 KNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDIS 179
++ A V + + + ++ + QV+E++ +S +A ++++ + + D + +
Sbjct: 321 RSIADAVDAASTDVSTSAAEIRSASDQVSESVQDISADADQQRDRLGTVGDEVTSLSATV 380
Query: 180 KETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIE 239
+E ++ ++ ++ + A ++ G E G A ++E I + E V + E +I
Sbjct: 381 EEIAASADDVAETVNQAATESERGQELGEDAVAELERIEATADSAVERVTALEEAVDAIG 440
Query: 240 NITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIK 299
++T VI+ I+EQTN+LALNA IEAARA ++G GFAVVADE++ LA+E K++A +I L+
Sbjct: 441 DVTGVITDIAEQTNMLALNANIEAARADKSGDGFAVVADEVKDLADEVKESATEIETLVD 500
Query: 300 QIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGE 359
+ + ++V + + V +E I+ +++ L + + +E + + ++
Sbjct: 501 DVQADVADTVADMSELGDRVDAGSETIEAALAALDDIGDQVEAANGSVQSISDATDEQAA 560
Query: 360 KIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISK 419
EE + ++ + ++ T +++VSAAAEEQ++++ E+ +LD V L + + +
Sbjct: 561 STEEVVTMIDEVTDLSDRTATESQQVSAAAEEQAASVSEVAGRADDLDDQVSTLNDLLDQ 620
Query: 420 F 420
F
Sbjct: 621 F 621
>dbj|BAB05546.1| (AP001513) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 678
Score = 153 bits (384), Expect = 2e-36
Identities = 106/346 (30%), Positives = 183/346 (52%), Gaps = 11/346 (3%)
Query: 80 DRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSIS---QLVLNIKNAAIDVRNHTKVMKEN 136
D A D+ +D EIG + Q ++ LR+ I Q A+++R+ + +
Sbjct: 333 DLTASADVKSQD-EIGQLSDGFNQMVQTLREMIHALRQTGATSNKEAVELRSMLQEAIAS 391
Query: 137 IEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREM 196
E+VA S VA + E + + +I K++ + D +T S + E AS
Sbjct: 392 SEEVATSSTAVANGAVDQAEEIEHAKSDIEKLSAQI----DWMDQTASQINELAAST--- 444
Query: 197 AQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLA 256
A ++ G E+ ++ EE R+++K+E V + I +I +I S SEQTNLLA
Sbjct: 445 ANVSASGLEQVETLREKTEEHERIIQKMEGIVNHFVHQTEEILSIVELIQSFSEQTNLLA 504
Query: 257 LNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGA 316
LNA+IEAARAGE GKGF+VVA+EIRKLAE+S KA +I+ +++I + + E + A
Sbjct: 505 LNASIEAARAGEYGKGFSVVAEEIRKLAEQSTKATNNIQSAVQKIKESGAHATEEMTKTA 564
Query: 317 EVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAE 376
+ + +S++ T ++ +E++ + +++ E + + + N+A +++
Sbjct: 565 AQSAEQVKRVDQSIASFTHISSNIEQVVNSIKTVVKQLQTMNESRNQAVLAINNIAGTSQ 624
Query: 377 ETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKL 422
+T AAAE++SA+ EE + L + S + L+ L D L +Q FK+
Sbjct: 625 DTAAAAEQISASIEELVNVLNTIGTSSERLNTLSDDLNKQAKAFKV 670
>gb|AAG19257.1| (AE005021) Htr6 transducer; Htr6 [Halobacterium sp. NRC-1]
Length = 789
Score = 153 bits (383), Expect = 3e-36
Identities = 108/385 (28%), Positives = 185/385 (48%), Gaps = 28/385 (7%)
Query: 56 KVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQL 115
+ A E ++LQ + +++ +A GDL+ + ED + +
Sbjct: 399 RAKATAEAASERLQERAADYSEVMQAVADGDLT-------------ERLDEDADEEAMRA 445
Query: 116 VLNIKNAAIDVRNHTKVMKENI-EQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRY 174
V NA +D T ++VAD QVA ++ +Q E I ++ D
Sbjct: 446 VATEFNAMLDGLEATIAQVAGFADEVADETLQVATGAEEIETTSQTVSERIQEIADGAIQ 505
Query: 175 IHDISKETVSTMEEFEASMREMAQL----------AKEGGEKGRQAA----DQIEEISRM 220
HD + M+E AS++E+A A E GE GR AA D + EI +
Sbjct: 506 QHDDLERAAGEMDELSASIQEVAASSATVAETAADAVERGEAGRDAAESAIDDMAEIESL 565
Query: 221 MEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEI 280
+ + + E I +I I+ I+EQTN+LALNA IEAARA + G GFAVVA+E+
Sbjct: 566 SADAVDQILALQERMSDIGDIIEFITDIAEQTNMLALNANIEAARADKDGDGFAVVANEV 625
Query: 281 RKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMM 340
+ LAEE+K+AA DI I+ + + E+V + +E + ++ + + + + +
Sbjct: 626 KDLAEETKQAAADIESEIQAVQAETDETVADIRATSEHIDDGVSTVERAAAAIEDTVDAI 685
Query: 341 EEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELR 400
E+ E+ + + + + +R ++++A ++ T AE+VSAAAEEQS+++ E+
Sbjct: 686 EDANHGIQEISDATEDQADATQSVVRRVDDVADISQHVTEDAEQVSAAAEEQSASVAEIA 745
Query: 401 ESVKELDRLVDVLMEQISKFKLSKD 425
S +L D L +++F+ D
Sbjct: 746 RSADDLRDRADALATTVNQFETRAD 770
>gb|AAB17882.1| (U75437) transducer HtC protein [Halobacterium salinarum]
Length = 792
Score = 150 bits (376), Expect = 2e-35
Identities = 89/362 (24%), Positives = 186/362 (50%), Gaps = 5/362 (1%)
Query: 62 EEYEKQLQREIDEIVKILDRIAQGDLSV---EDKEIGGMGAKVRQGIEDLRKSISQLVLN 118
E ++L+R E + A GDL+ ED + GM + + D+ + +
Sbjct: 421 ERLNERLERRAAEYSDEMAAAAAGDLTRRLDEDVDSDGM-QDIAEAFNDMMGDVEATLAQ 479
Query: 119 IKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDI 178
+++ A D + + ++ + QV+E++ +S +A+ +++ + + D + +
Sbjct: 480 VRSIA-DAVDAASTDVHDAAEIRSASDQVSESVQDISADAEEQRDRLGTVGDEVHALSAT 538
Query: 179 SKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSI 238
++ + +++ + A ++ G E G A ++E I + E V + E +I
Sbjct: 539 VEDIAARPTTSPSTVNQAATESERGQELGEDAVAELERIEATADSAVERVTALEEAVDAI 598
Query: 239 ENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELI 298
++T VI+ I+EQTN+LALNA IEAARA ++G GFAVVADE++ LA+E K++A +I L+
Sbjct: 599 GHVTGVITDIAEQTNMLALNANIEAARADKSGDGFAVVADEVKDLADEVKESATEIETLV 658
Query: 299 KQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEG 358
+ + ++V + + V +E I+ +++ + + + +E + + ++
Sbjct: 659 DDVQADVADTVADMSELGDRVDAGSETIEAALAAVDDIGDQVEAANGSVQSISDATDEQA 718
Query: 359 EKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQIS 418
EE + ++ + ++ T +++VSAAAEEQ++++ E+ +LD V L + +
Sbjct: 719 ASTEEVVTMIDEVTDLSDRTATESQQVSAAAEEQAASVSEVAGRADDLDDQVSTLNDLLD 778
Query: 419 KF 420
+F
Sbjct: 779 QF 780
>gb|AAG19812.1| (AE005065) Htr8 transducer; Htr8 [Halobacterium sp. NRC-1]
Length = 643
Score = 150 bits (376), Expect = 2e-35
Identities = 104/396 (26%), Positives = 185/396 (46%), Gaps = 19/396 (4%)
Query: 50 KGETKVKVSADIEEYEKQLQREIDEIVKILDRI--------------AQGDLSVE---DK 92
K E K ++ AD EE + + + E+ + +R+ A GDLSV D
Sbjct: 244 KAEAK-RLKADAEEAREAAEAQQREVAALNERLEATANTYGAAMARAADGDLSVRLDPDV 302
Query: 93 EIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAIN 152
E M A + ++ + I+ A DV ++ + ++ D+ QV+E +
Sbjct: 303 ENDAMAA-IAASFNEMLDETETTIREIQAVASDVAAASEDADAGVVEIEDASGQVSETVQ 361
Query: 153 QVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAAD 212
+++ A ++E + ++ M + +E ++ + E A +A +G + QA
Sbjct: 362 EIAAGADEQREKLETVSGEMTDLSAAIEEVAASADSVAERSHETAAVAGDGEQTAEQAIA 421
Query: 213 QIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKG 272
+ +E + V + + I I ++IS ++EQTN+LALNA IEAARA ++G G
Sbjct: 422 DSRTVQSAVESTVQNVEALDDQLAEISEIVDLISDVAEQTNMLALNANIEAARADKSGDG 481
Query: 273 FAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSY 332
FAVVADE++ LAEE++ +A DI L+ I ++ +V + E V+ + + V
Sbjct: 482 FAVVADEVKDLAEETRASAGDIEALVADIDAQMQATVTEARTADESVQDAISAVDAVVDA 541
Query: 333 LTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQ 392
VAE EE + E+ + EE + + ++ + T A A++ S AAE+Q
Sbjct: 542 FGTVAENAEETDTGVQEISTTTDDQAASTEEAVSMIAEVSDISTATAADAQQASTAAEQQ 601
Query: 393 SSALQELRESVKELDRLVDVLMEQISKFKLSKDHES 428
++A + E+ L D L +S F + + S
Sbjct: 602 TTAAATISENTAALREQADRLQGLVSTFDVHDESAS 637
>pir||T44262 transducer protein htrVI [similarity] - Halobacterium salinarum
>gi|4104485|gb|AAD02052.1| (AF036231) transducer HtrVI
[Halobacterium salinarum]
Length = 788
Score = 150 bits (374), Expect = 3e-35
Identities = 109/385 (28%), Positives = 185/385 (47%), Gaps = 29/385 (7%)
Query: 56 KVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQL 115
+ A E ++LQ + +++ +A GDL+ + ED + +
Sbjct: 399 RAKATAEAASERLQERAADYSEVMQAVADGDLT-------------ERLDEDADEEAMRA 445
Query: 116 VLNIKNAAIDVRNHTKVMKENI-EQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRY 174
V NA +D T ++VAD QVA ++ +Q E I ++ D
Sbjct: 446 VATEFNAMLDGLEATIAQVAGFADEVADETLQVATGAEEIETTSQTVSERIQEIADGAIQ 505
Query: 175 IHDISKETVSTMEEFEASMREMAQL----------AKEGGEKGRQAA----DQIEEISRM 220
HD + M+E AS++E+A A E GE GR AA D + EI +
Sbjct: 506 QHDDLERAAGEMDELSASIQEVAASSATVAETAADAVERGEAGRDAAESAIDDMAEIESL 565
Query: 221 MEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEI 280
+ + + E I +I I+ I+EQTN+LALNA IEAARA + G GFAVVA+E+
Sbjct: 566 SADAVDQILALQERMSDIGDIIEFITDIAEQTNMLALNANIEAARADKDGDGFAVVANEV 625
Query: 281 RKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMM 340
+ LAEE+K+AA DI I+ + + E+V + +E + ++ + + + + +
Sbjct: 626 KDLAEETKQAAADIESEIQAVQAETDETVADIRATSEHIDDGVSTVERAAAAIEDTVDAI 685
Query: 341 EEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELR 400
E+ E+ + + + + +R ++++A ++ T AE+VSAAAEEQS+++ E+
Sbjct: 686 EDANHGIQEISDATEDQADATQSVVRRVDDVADISQHVTEDAEQVSAAAEEQSASVAEIA 745
Query: 401 ESVKELDRLVDVLMEQISKFKLSKD 425
S DR D L +++F+ D
Sbjct: 746 RSDDLRDR-ADALATTVNQFETRAD 769
>dbj|BAB05228.1| (AP001512) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 500
Score = 150 bits (374), Expect = 3e-35
Identities = 112/422 (26%), Positives = 220/422 (51%), Gaps = 40/422 (9%)
Query: 15 VIPFVLTVIPAVFNSIPGAIVGGIVGVGIASYINYKGETKVKVSADIEEYEKQLQREIDE 74
++ F+ I A+++ + G++G+ + +Y + + D +Q+ ++
Sbjct: 93 LLVFISLAIVALYHQFRVIALSGVIGLLLTNYFFLTLRDSMFIGLD-----EQVLFSLNL 147
Query: 75 IVKILDRIAQGDLSVEDKEIGGMGAKVRQG---IEDLRKSISQLVLNIKNAAIDVRNHTK 131
V +L I + ++ M AKV + + +K QL+ + + + ++
Sbjct: 148 YVLLLTVILMAQAKIGEQ----MRAKVEADHALVVEEKKRTEQLLDRVAETSHVIETFSE 203
Query: 132 VMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEA 191
+ +E+ D Q++ A N+VS +++ NI++M +TM + VS M E
Sbjct: 204 KVLSEMEKTKDVSQELVGAFNEVSQGVEQQSGNITEMKETMLK----QDQAVSQMAEVSE 259
Query: 192 SMREMAQLAKEGGEKGRQAADQI----EEISRMMEKIEETVRGVAEMGKSIENITNVISS 247
S ++ LAK+G EK ++ + +E++ + ++ET+ + + K + IT+++++
Sbjct: 260 STKK---LAKQGKEKSEESYTNMLGWSKEVTELQATVDETLTTILGLSKKSQQITSIVAT 316
Query: 248 ---ISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAE-------DIREL 297
I+EQTNLLALNAAIEAARAGE GKGF+VVA+E+RKLA++S+ A + DI+++
Sbjct: 317 VNQIAEQTNLLALNAAIEAARAGEQGKGFSVVAEEVRKLAQDSQAATQQVNAILGDIQKM 376
Query: 298 IKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQE 357
I +K+ S VT +G E E + S ++ +A E ++ + S L + +
Sbjct: 377 TGAISEKMMNSKTVTDKGVERATGMLESLTISEQMMSSIASDCELLDDRLSLLSKSQMSL 436
Query: 358 GEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQI 417
E+I ++ + +++ A EEV A+ E+Q+ A+Q + + ++EL++L L+ +
Sbjct: 437 TEEI-------VSVQSVTQQSQAMVEEVFASVEQQNQAIQNVTKQLEELNQLNGRLVAAL 489
Query: 418 SK 419
S+
Sbjct: 490 SQ 491
>sp|Q02929|CPS_CLOTM PUTATIVE SENSORY TRANSDUCER PROTEIN >gi|477735|pir||B47704 probable
sensory transducer protein - Clostridium thermocellum
>gi|144913|gb|AAA20891.1| (L04736) sensory transducer
protein [Clostridium thermocellum]
Length = 557
Score = 149 bits (372), Expect = 6e-35
Identities = 96/366 (26%), Positives = 199/366 (54%), Gaps = 27/366 (7%)
Query: 68 LQREIDEIVKILDRIAQGDLSVEDK-----EIGGMGAKVRQGIEDLRKS---ISQLVLNI 119
+ + I ++V+ DR+A GD+ V+ K EIG + ++ IE++R+ + ++
Sbjct: 149 ISKPIGQMVEAADRLALGDVEVDVKAETRDEIGKLAESFKRMIENIREQAYVVERIAAGD 208
Query: 120 KNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDIS 179
+ V++ ++ + ++++ D+ +V IN+V+ + + +S D+ + +
Sbjct: 209 MTVDVRVKSDKDLLGKKLKEMVDTNNEVLSNINEVAAQVAAGAKQVS---DSSMQLSQGA 265
Query: 180 KETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEK----IEETVRGVAEMG 235
E S++EE AS+ ++A + + QA + E E+ + E + + E+
Sbjct: 266 TEQASSIEELTASLEQVANQTQLSAKNANQANELAEVAKNNAEQGNKQMAEMLNAMEEIN 325
Query: 236 KSIENITNVISSISE---QTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAE 292
S NI+ +I I E QTN+LALNAA+EAARAG+ GKGFAVVA+E+R LA S AA+
Sbjct: 326 NSSSNISRIIKVIDEIAFQTNILALNAAVEAARAGQHGKGFAVVAEEVRNLAARSANAAK 385
Query: 293 DIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELRE 352
+ ELI+ +++ T+ G ++ + + E + + V +++ A ++ ++ V ++E
Sbjct: 386 ETTELIE-------GTIKRTENGTKIARETAEALNKIVEGISKAATLVNDIAVASNEQAA 438
Query: 353 KVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDV 412
+ Q + I + + ++ +A++EE+ AA+EE+S+ AE ++ + + +K + ++
Sbjct: 439 AITQINQGIAQVSQVVQTNSATSEESAAASEELSSQAELLKRSIAKFK--LKNMGKMTSN 496
Query: 413 LMEQIS 418
+++S
Sbjct: 497 RYKEVS 502
>dbj|BAB07582.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 559
Score = 148 bits (371), Expect = 8e-35
Identities = 102/369 (27%), Positives = 191/369 (51%), Gaps = 26/369 (7%)
Query: 68 LQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVR 127
+ + I ++ + +IA+GDLS ED + K + I L K+ ++ ++++ +
Sbjct: 203 ITKPIHSLLGQVSQIAKGDLSGED-----INVKSKDEIGRLAKAFDEMKSHLRSLIGKTK 257
Query: 128 NHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTME 187
+ + ++++ S Q+ NQV+ Q E D + +KE + +E
Sbjct: 258 EMSDQVTATAQELSASSQESVTVTNQVATTIQDVSEQSMDTVDRAKASVIAAKEMSAGVE 317
Query: 188 EF-----EASMR--EMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIEN 240
+ S++ E A A++G +A +Q++ +++ ++ + E I +
Sbjct: 318 RITFATADVSIKADEAASHAEDGERSIERAIEQMDTAQHSVQQSATFIKQLGERSSEIGS 377
Query: 241 ITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQ 300
I +I SI+EQTNLLALNAAIEAARAGE GKGFAVVADE+RKLAEES ++A I +++
Sbjct: 378 ILELIHSIAEQTNLLALNAAIEAARAGEHGKGFAVVADEVRKLAEESGRSANQISKMLAT 437
Query: 301 IGDKIGESVEVTQQGAEVVKTSTEVIKES-------VSYLTQVAEMMEEMEVKASELREK 353
I ++++ +G V+ T+V+ ++ + + V E M ++ ++
Sbjct: 438 IQQDTEKAIQEMDKGQVEVEKGTKVVGDAGATFAKITASIAAVNEQMLDVSTATQQIARN 497
Query: 354 VIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVL 413
I+ + I +N+ ++ + ++ V+A+ EEQ S+++E+ S ++L L L
Sbjct: 498 TIELSDSI-------QNMEQASMQNADHSQTVAASTEEQLSSMEEIAYSAEQLSNLAAGL 550
Query: 414 MEQISKFKL 422
E+I++FKL
Sbjct: 551 QEEINRFKL 559
>pir||T44606 transducer protein htpIV [similarity] - Halobacterium salinarum
>gi|1654427|gb|AAB17884.1| (U75439) transducer HtF
protein [Halobacterium salinarum]
Length = 804
Score = 148 bits (370), Expect = 1e-34
Identities = 100/376 (26%), Positives = 189/376 (49%), Gaps = 14/376 (3%)
Query: 59 ADIEEYEKQLQREIDEIVKILDRIAQGDLS----VEDKEIGGMGAKVRQGIEDLRKSISQ 114
AD E +L+ + + ++ +A GDL+ +D + M A + D
Sbjct: 429 ADAEALAAELEAQAERYSDVIGGVADGDLTRRMPADDTDNEAMAA-IAASFND--SQWEH 485
Query: 115 LVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRY 174
+++I+ A V ++ + + QV+E++ +++ A ++ + ++ M
Sbjct: 486 TIIDIQEFADAVATASEEAEVGAADAERASGQVSESVQEIAGAADEQRNMLDTVSGEMTD 545
Query: 175 IHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEM 234
+ +E S E S + A++A++G + A D IE + E I+ TV+ V +
Sbjct: 546 LSAAIEEVASADSVAEHS-HQTAEIARDGEQT---AEDAIERSLTVQEAIDATVQNVEAL 601
Query: 235 GKS---IENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAA 291
I I ++IS I+EQTN+LALNA IEAARA ++G GFAVVADE++ AEE++++A
Sbjct: 602 DDQMAEISEIVDLISDIAEQTNMLALNANIEAARADKSGDGFAVVADEVKDFAEETQESA 661
Query: 292 EDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELR 351
DI I ++ + +V + E + + ++E V T V++ +E + E+
Sbjct: 662 GDIERRITEVQSQTTATVAEARAAEESMDAGIDAVEEVVDAFTAVSDHSDETDTGVQEIS 721
Query: 352 EKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVD 411
+ + EE + E +A ++ T A+ VSA AEEQ++++ E+ ++V+ L +
Sbjct: 722 DTTDDQAASTEEAVSMTEEVADLSDSTAGEAQSVSATAEEQAASMSEISDTVESLSGQAE 781
Query: 412 VLMEQISKFKLSKDHE 427
L +S+F++ D +
Sbjct: 782 QLKALLSEFEVDADRD 797
>sp|P39209|TLPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPC >gi|2127141|pir||I40496
methylation enzyme tlpC - Bacillus subtilis
>gi|496484|emb|CAA83970.1| (Z34005) tlpC [Bacillus
subtilis]
Length = 573
Score = 148 bits (369), Expect = 1e-34
Identities = 105/377 (27%), Positives = 188/377 (49%), Gaps = 23/377 (6%)
Query: 64 YEKQLQREIDEIVKILDRIAQGDLSVE--DK------EIGGMGAKVRQGIEDLRKSISQL 115
+ +++ + ++ + + GD+++E DK E+ K+R + D +++ Q
Sbjct: 207 FTRKINKRLNALKSAFESAGNGDMTIEVSDKTGDELSELSVYYNKMRMKLNDTIQTVQQS 266
Query: 116 VLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYI 175
L + +A+ + + + E++ ++VQQ+A N + R + + S + I
Sbjct: 267 ALQLASASQQLSAGAEETNQASEKITEAVQQIA---NGAQDQITRIENSESSLKQASADI 323
Query: 176 HDISKETVSTMEEFEASMREMAQLAKEGGEKGRQ----AADQIEEISRMMEKIEETVRGV 231
DIS T A++ + QLA+ + G++ Q++ I + ++K E + +
Sbjct: 324 RDISANT--------AAIADKGQLAQSKADIGQKEIANVQAQMDAIHQSIQKSGEIIHQL 375
Query: 232 AEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAA 291
K IE I +VI+ I++QTNLLALNAAIEAARAGE GKGFAVVADE+RKLAEES+++A
Sbjct: 376 DGRSKQIEQILSVITQIADQTNLLALNAAIEAARAGEQGKGFAVVADEVRKLAEESQQSA 435
Query: 292 EDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELR 351
I +LI +I + S + +I+ + ++A E+ + S+L
Sbjct: 436 GQISKLIIEIQKDMNRSARSVEHVKTEAAEGVTMIQRTRDAFKEIAAATGEISAEISDLS 495
Query: 352 EKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVD 411
V + A +E+T + +A EEQ +A++E+ + + L +L +
Sbjct: 496 ASVTNISASAHQINDSFAANTADIKESTKNTRQAAALTEEQFAAMEEITAASETLSQLAE 555
Query: 412 VLMEQISKFKLSKDHES 428
L IS+FK+ E+
Sbjct: 556 ELTGIISQFKMINQAEN 572
>pir||B69896 methyl-accepting chemotaxis protein homolog yoaH - Bacillus
subtilis >gi|2619023|gb|AAB84447.1| (AF027868) YoaH
[Bacillus subtilis] >gi|2634254|emb|CAB13753.1| (Z99114)
similar to methyl-accepting chemotaxis protein [Bacillus
subtilis]
Length = 534
Score = 147 bits (368), Expect = 2e-34
Identities = 101/366 (27%), Positives = 196/366 (52%), Gaps = 17/366 (4%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVEDKEI---GGMGAKVRQGIEDLRKSISQLVLNIKNA 122
K + + I K L+ IA G+ + K I ++ Q S++Q+V I ++
Sbjct: 175 KSIMVPLRSINKQLEEIAHGEADLTKKVIVKNKDEFGQLAQSFNSFTHSLTQIVKQISSS 234
Query: 123 AIDVRNHTKVM-------KENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYI 175
+ V ++ + K E ++ ++Q A++ + S ++ E+I+++ D+ I
Sbjct: 235 SEQVAASSEELSASAEESKSTSEHISRAMQMAADSNVKQSSMTEKSAESITELLDS---I 291
Query: 176 HDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMG 235
++ T + + +SMR+ A++ G + + DQ++ I + ++ ++ +
Sbjct: 292 SSVASNT-GNIADLSSSMRDKAEI---GSKSVNKMLDQMKFIDKSVDSAGNGLQTLVAST 347
Query: 236 KSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIR 295
I +I+++I++ISEQTNLLALNAAIEAARAGE GKGFAVVA+E+RKLA+E+ K+A I+
Sbjct: 348 AEISDISSLITTISEQTNLLALNAAIEAARAGEQGKGFAVVAEEVRKLADETNKSANHIQ 407
Query: 296 ELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVI 355
++ I ++ E+V + E V + + +E+ ++ ++E++ + E+
Sbjct: 408 SVVATIQNESIETVNNIKVVQENVSSGIVLSQETTGNFNEILNLVEQVTSQIQEVAAATQ 467
Query: 356 QEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLME 415
Q +E + LAA +ET+A E V+ +++EQ ++ E+ + + L +L + L
Sbjct: 468 QLTSGVEVIQHTVHTLAAGTKETSANTEAVANSSQEQLHSMGEISYAAESLSQLAEELQT 527
Query: 416 QISKFK 421
I++FK
Sbjct: 528 VINRFK 533
>dbj|BAB05994.1| (AP001515) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 671
Score = 147 bits (367), Expect = 2e-34
Identities = 94/373 (25%), Positives = 199/373 (53%), Gaps = 19/373 (5%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQL---VLNIKNA 122
+ + + I + + +A GDL+V+ + G +V Q E ++ + QL + +K +
Sbjct: 308 RSITKPISRLGTHVGTVASGDLTVDVRAAGN--DEVGQLTESFKEMLVQLRGIITTVKGS 365
Query: 123 AIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKET 182
V+ + E+ S +++A A+ V+I + ++ E++ + R I ++++
Sbjct: 366 TAHVQEAADHLTAISEETIASSEEIALAVRDVAIGSTKQVEHLD---EAKRQIDQLARQ- 421
Query: 183 VSTMEEFEASMREMAQLAKEGGEKGRQAADQIE-------EISRMMEKIEETVRGVAEMG 235
ME+ SM E+ L+ E G+ +++++ E + + +++E+ + +++
Sbjct: 422 ---MEQMSLSMTEVGSLSNETRLAGQSGSEKVQHLKTKTLEANTVFDQMEDGLLKLSDHI 478
Query: 236 KSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIR 295
I + + I+ +SEQTNLLALNA+IEAARAGE GKGFAVVA+E+R+LAE+S +
Sbjct: 479 MEINEVIHTINHLSEQTNLLALNASIEAARAGEHGKGFAVVANEVRRLAEQSSHETVRVG 538
Query: 296 ELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVI 355
+ I I ++ + + +Q ++ ++ + E+ + +A ++++M + ++E
Sbjct: 539 DTITGIVNRSKQVIVDMKQARSILSEQSDSVDETENTFLHMASLIKQMNETLASVQEDFG 598
Query: 356 QEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLME 415
E+ + ++ +E + AE+ A +EEV+A+ +EQ +ALQ + E+ ++L L +
Sbjct: 599 TLAEQNSQFVKRIEAVVEVAEQAAATSEEVNASTDEQVTALQRITEAAEQLQEASHELNQ 658
Query: 416 QISKFKLSKDHES 428
+ +F+ + S
Sbjct: 659 SVRQFQTESESNS 671
>pir||T44253 transducer protein htrVIII [validated] - Halobacterium salinarum
>gi|3015619|gb|AAC38313.1| (AF031641) methyl-accepting
aerotaxis transducer protein [Halobacterium salinarum]
Length = 642
Score = 146 bits (366), Expect = 3e-34
Identities = 106/392 (27%), Positives = 183/392 (46%), Gaps = 28/392 (7%)
Query: 50 KGETKVKVSADIEEYEKQLQREIDEIVKILDRI--------------AQGDL---SVEDK 92
K E K ++ AD EE + + + E+ + +R+ A GDL S+ D
Sbjct: 244 KAEAK-RLKADAEEAREAAEAQQREVAALNERLEATANTYGAAMARAADGDLRCASIPDV 302
Query: 93 EIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAIN 152
E M A + ++ + I+ A DV ++ + ++ D+ QV+E +
Sbjct: 303 ENDAMAA-IAASFNEMLDETETTIREIQAVASDVAAASEDADAGVVEIEDASGQVSETVQ 361
Query: 153 QVSIEAQREQENIS----KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGR 208
+++ A ++E + +MTD I +++ S A E A +A +G +
Sbjct: 362 EIAAGADEQREKLETVSGEMTDLSAAIEEVAASAHSV-----ADSHETAAVAGDGEQTAE 416
Query: 209 QAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGE 268
QA + +E + V + + I I ++IS ++EQTN+LALNA IEAARA +
Sbjct: 417 QAIADSRTVQSAVESTVQNVEALDDQLAEISEIVDLISDVAEQTNMLALNANIEAARADK 476
Query: 269 AGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKE 328
+G GFAVVADE++ LAEE++ +A DI L+ I ++ +V + E V+ + +
Sbjct: 477 SGDGFAVVADEVKDLAEETRASAGDIEALVADIDAQMQATVTEARTADESVQDAISAVDA 536
Query: 329 SVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAA 388
V VAE EE + E+ + EE + + ++ + T A A++ S A
Sbjct: 537 VVDAFGTVAENAEETDTGVQEISTTTDDQAASTEEAVSMIAEVSDISTATAADAQQASTA 596
Query: 389 AEEQSSALQELRESVKELDRLVDVLMEQISKF 420
AE+Q++A + E+ L D L +S F
Sbjct: 597 AEQQTTAAATISENTAALREQADRLQGLVSTF 628
>dbj|BAA06432.1| (D30762) methyl-accepting chemotaxis protein TlpC [Bacillus
subtilis] >gi|1805416|dbj|BAA08978.1| (D50453)
methyl-accepting chemotaxis protein of B. subtilis
[Bacillus subtilis] >gi|2632630|emb|CAB12138.1| (Z99105)
methyl-accepting chemotaxis protein [Bacillus subtilis]
Length = 573
Score = 146 bits (365), Expect = 4e-34
Identities = 105/377 (27%), Positives = 186/377 (48%), Gaps = 23/377 (6%)
Query: 64 YEKQLQREIDEIVKILDRIAQGDLSVE--DK------EIGGMGAKVRQGIEDLRKSISQL 115
+ +++ + + + + GD+++E DK E+ K+R + D +++ Q
Sbjct: 207 FTRKINKRLTALKSAFESAGNGDMTIEVSDKTGDELSELSVYYNKMRMKLNDTIQTVQQS 266
Query: 116 VLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYI 175
L + +A+ + + + E++ ++VQQ+A N + R + + S + I
Sbjct: 267 ALQLASASQQLSAGAEETNQASEKITEAVQQIA---NGAQDQITRIENSESSLKQASADI 323
Query: 176 HDISKETVSTMEEFEASMREMAQLAKEGGEKGRQ----AADQIEEISRMMEKIEETVRGV 231
DIS T A + + QLA+ + G++ Q++ I + ++K E + +
Sbjct: 324 RDISANT--------APIADKGQLAQSKADIGQKEIANVQAQMDAIHQSIQKSGEIIHQL 375
Query: 232 AEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAA 291
K IE I +VI+ I++QTNLLALNAAIEAARAGE GKGFAVVADE+RKLAEES+++A
Sbjct: 376 DGRSKQIEQILSVITQIADQTNLLALNAAIEAARAGEQGKGFAVVADEVRKLAEESQQSA 435
Query: 292 EDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELR 351
I +LI +I + S + +I+ + ++A E+ + S+L
Sbjct: 436 GQISKLIIEIQKDMNRSARSVEHVKTEAAEGVTMIQRTRDAFKEIAAATGEISAEISDLS 495
Query: 352 EKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVD 411
V + A +E+T + +A EEQ +A++E+ + + L +L +
Sbjct: 496 ASVTNISASAHQINDSFAANTADIKESTKNTRQAAALTEEQFAAMEEITAASETLSQLAE 555
Query: 412 VLMEQISKFKLSKDHES 428
L IS+FK+ E+
Sbjct: 556 ELTGIISQFKMINQAEN 572
>pir||S75940 methyl-accepting chemotaxis protein sll0041 - Synechocystis sp.
(strain PCC 6803) >gi|1001300|dbj|BAA10787.1| (D64006)
methyl-accepting chemotaxis protein I [Synechocystis
sp.]
Length = 891
Score = 146 bits (365), Expect = 4e-34
Identities = 93/353 (26%), Positives = 182/353 (51%), Gaps = 24/353 (6%)
Query: 59 ADIEEYE--KQLQREIDEIVKILDRIAQGDLSVE----DKEIGGMGAKVRQGIEDLRKSI 112
A++E+ + +++Q+ E++ +D +++GDL++ + EIG + IE LR+ +
Sbjct: 553 AEVEQRQMREKMQKRALELLMEVDPVSRGDLTIRAHVTEDEIGTIADSYNATIESLRRIV 612
Query: 113 SQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTM 172
+Q V+ E + +V+Q+A+ N+ +++ E + M ++
Sbjct: 613 TQ-----------VQTAASQFTETTDTNEVAVRQLAQQANRQALDVAEALERLQAMNKSI 661
Query: 173 RYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVA 232
+ + + + + E++++ Q +G + + D I I + + V+ +
Sbjct: 662 QAVAENAAQA-------ESAVQRATQTVDQGEDAMNRTVDGIVAIRETVAATAKQVKRLG 714
Query: 233 EMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAE 292
E + I + N+I S ++QTNLLALNAAIEAA AGE G+GFAVVADE+R LA +S +A
Sbjct: 715 ESSQKISKVVNLIGSFADQTNLLALNAAIEAAHAGEEGRGFAVVADEVRSLARQSAEATA 774
Query: 293 DIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELRE 352
+I +L+ I + E V + G E V T++++E+ L Q+ + ++ +
Sbjct: 775 EIAQLVATIQAETNEVVNAMEAGTEQVVVGTKLVEETRRSLNQITAVSAQISGLVEAITS 834
Query: 353 KVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKE 405
I++ + E + + +A A++ ++ A VSA +E + Q L+E+VK+
Sbjct: 835 AAIEQSQTSESVTQTMALVAQIADKNSSEASGVSATFKELLAVAQSLQEAVKQ 887
>gb|AAG19381.1| (AE005032) Htr15 transducer; Htr15 [Halobacterium sp. NRC-1]
Length = 636
Score = 146 bits (364), Expect = 5e-34
Identities = 99/361 (27%), Positives = 187/361 (51%), Gaps = 25/361 (6%)
Query: 57 VSADIEEYEKQLQRE------IDEIVKILDRIAQGDLSVEDK-EIGGMGAKVRQGIEDLR 109
V+ IE+ + ++R +DE+ +D ++ G LS E G+ + + + +
Sbjct: 285 VAETIEDRTEDVRRADAVEELVDELSTTIDALSSGQLSKRASFEHEGI---INEQLVSVV 341
Query: 110 KSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAI---NQVSIEAQREQENIS 166
+++ + + V T+ + + IE+ +A+ + N++ A E EN S
Sbjct: 342 SALNGMADQFERLVGQVDGQTQELADTIERATADATDIADTVSSQNEMLSSAANEMENFS 401
Query: 167 KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQI-EEISRMMEKIE 225
S + V+ + AS E AQ A E G + + A+Q E+ + + +
Sbjct: 402 A-----------SMQEVAASSDQVASAAEQAQDAAESGLEASEGANQATNEVIDISDDLM 450
Query: 226 ETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAE 285
E+V + IE++ VI+ +++QTNLLALNA IEAARAGEAG GFAVVADE+++LA
Sbjct: 451 ESVSKLESRMDEIEDVVEVIAEVADQTNLLALNANIEAARAGEAGSGFAVVADEVKELAN 510
Query: 286 ESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEV 345
E+++ E I I + + E+V ++ E + + + I ++++ L ++A ++E
Sbjct: 511 ETREHTERIAGSISDVQQQANETVLAVEESHEQIHRAGDEIDDALTALEEIATSVDEAAT 570
Query: 346 KASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKE 405
+E+ ++ +E+ + +E++ AEE AA++ + +A +EQS+A+ +L E V +
Sbjct: 571 GITEVARANDEQASTVEDVIVTIEDVQQQAEEAAAASDRIVSATQEQSTAVSQLSERVDK 630
Query: 406 L 406
L
Sbjct: 631 L 631
>pir||S74988 methyl-accepting chemotaxis protein slr1044 - Synechocystis sp.
(strain PCC 6803) >gi|1652103|dbj|BAA17028.1| (D90902)
methyl-accepting chemotaxis protein [Synechocystis sp.]
Length = 869
Score = 144 bits (360), Expect = 2e-33
Identities = 93/351 (26%), Positives = 182/351 (51%), Gaps = 22/351 (6%)
Query: 58 SADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDK----EIGGMGAKVRQGIEDLRKSIS 113
+A E+ ++LQR++ ++ ++ ++GDL+V+ + E+G + I++LR
Sbjct: 530 AATTEKVREKLQRQVIRLLDDVEGASRGDLTVQAEVTADELGAVADAFNLTIQNLR---- 585
Query: 114 QLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMR 173
++VL +KNAA V N+ K + + ++AE + Q E+I ++ + R
Sbjct: 586 EIVLQVKNAAKQVNNNCKDSESFARNNSSDALRMAEELAVTLNSVQLMTESIERVAENAR 645
Query: 174 YIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAE 233
+++ + T A +GGE + I +I + + V+ +AE
Sbjct: 646 EAEEVAHTSSLT--------------ALKGGEAVERTVGGILQIRETVSETARKVKRLAE 691
Query: 234 MGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAED 293
+ I I VIS I+ +TNLLALNA+I+AARAGEAG+GFA+VADE+R+LA+ S K+ ++
Sbjct: 692 ASQEISKIVAVISQIASRTNLLALNASIQAARAGEAGRGFAIVADEVRQLADRSAKSLKE 751
Query: 294 IRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREK 353
I +++ QI + G + ++G + V T+ ++S L + E+ + +
Sbjct: 752 IEQIVLQIQSETGSVMTAMEEGIQQVIDVTDKSEQSKRALEDIIEVSNRINTLVRSITAD 811
Query: 354 VIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVK 404
+++ E ++++ +A+ET+ ++ V+ + + S ++L SV+
Sbjct: 812 TVKQQENSGAVSNVMQSIELTAQETSQESQRVAGSLQTLVSISRDLLTSVE 862
>pir||B71160 probable methyl-accepting chemotaxis protein - Pyrococcus
horikoshii >gi|3256884|dbj|BAA29567.1| (AP000002) 277aa
long hypothetical methyl-accepting chemotaxis protein
[Pyrococcus horikoshii]
Length = 277
Score = 143 bits (357), Expect = 3e-33
Identities = 83/274 (30%), Positives = 149/274 (54%), Gaps = 11/274 (4%)
Query: 151 INQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGG---EKG 207
+N+V+ R K+ + YI +S + +EE ++++ A E EKG
Sbjct: 6 LNEVNELVSRLNNENVKIAEVNDYIQTLS----AGIEEMNVQAQQLSDFAVESSSMAEKG 61
Query: 208 RQAAD----QIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEA 263
++ +D ++ +IS ++ + +AE K I+ I VISSI+ QTNLLALNA+IEA
Sbjct: 62 KEISDNVALKVSKISETSREMSNAISILAEYSKKIDEIVYVISSIASQTNLLALNASIEA 121
Query: 264 ARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTST 323
ARAGEAG+GFAVVA+ +R+LA+ SKKAAE IR+LIK++ + +E Q+ +V +
Sbjct: 122 ARAGEAGRGFAVVAENVRELADRSKKAAEQIRDLIKEMQENTNRVIEAIQENVKVTEEVK 181
Query: 324 EVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAE 383
E I+E ++ +A E EL E + ++ ++ + +++++ + A
Sbjct: 182 EAIQELIAAFDDIARRANETATMVKELSEGIDEQANSVQMLVERIDSISKDVSDNLNFAT 241
Query: 384 EVSAAAEEQSSALQELRESVKELDRLVDVLMEQI 417
+++ + L+ ++ V +L +D +E++
Sbjct: 242 QLTETVKGSIEKLEVIKNKVSQLKDELDKTLEKL 275
>sp|Q48319|HTR6_HALSA HALOBACTERIAL TRANSDUCER PROTEIN VI >gi|11277604|pir||T48897
transducer protein VI (htp6, htD) [imported] -
Halobacterium salinarum >gi|1435134|emb|CAA64843.1|
(X95590) halobacterial transducer protein VI
[Halobacterium salinarum]
Length = 778
Score = 143 bits (356), Expect = 4e-33
Identities = 101/374 (27%), Positives = 179/374 (47%), Gaps = 14/374 (3%)
Query: 62 EEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQG-IEDLRKSISQLVLNIK 120
E ++L+ + + + A GDL+V + A V Q + D+ + +++ +++
Sbjct: 408 EAQARRLETTAEAFSETMRAYAAGDLTVR------LDADVEQAAMADIAAAFNEMAADME 461
Query: 121 NAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISK 180
D + +DS V + VS R ++ + D + + +
Sbjct: 462 ATIADAGRFADEVATASTDASDSAAAVEQTGRDVSDAVGRIRDRAADQRDQLEAVASETD 521
Query: 181 ETVSTMEEFEASMREMAQLAKEG---GEKGRQAAD----QIEEISRMMEKIEETVRGVAE 233
E +T+EE AS ++A+ ++ G+ G+ AA Q+EEI + V +
Sbjct: 522 EMSATIEEVAASADQVAETSQRAAALGDDGQAAAQDAVAQLEEIEDETQAAATAVDDLEA 581
Query: 234 MGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAED 293
IE I I+ I+EQTN+LALNA IEAARA + G GFAVVADE++ LA+ESK +A +
Sbjct: 582 KMSEIETIVAAITDIAEQTNMLALNANIEAARADQDGDGFAVVADEVKDLADESKASAAE 641
Query: 294 IRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREK 353
I L+ ++ + SV + E V E + E+ L+++A + E + E+
Sbjct: 642 IEALVAEVRAQTETSVAAMDRIQERVSDGVETVSETERSLSEIAGRIAEADTGVQEISNA 701
Query: 354 VIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVL 413
+ + + + + ++AA EET AE + AA EQ+S L ++ + L L
Sbjct: 702 MDDQAASVSDVTTAVGDVAALGEETATEAESTADAAAEQASTLSDVAAQTETLAEHAVAL 761
Query: 414 MEQISKFKLSKDHE 427
E ++F+++ D+E
Sbjct: 762 REHAAQFEVAADNE 775
>gb|AAG19266.1| (AE005022) Htr4 transducer; Htr4 [Halobacterium sp. NRC-1]
Length = 778
Score = 142 bits (354), Expect = 8e-33
Identities = 101/374 (27%), Positives = 180/374 (48%), Gaps = 14/374 (3%)
Query: 62 EEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQG-IEDLRKSISQLVLNIK 120
E ++L+ + + + A GDL+V + A V Q + D+ + +++ +++
Sbjct: 408 EAQARRLETTAEAFSETMRAYAAGDLTVR------LDADVEQAAMADIAAAFNEMAADME 461
Query: 121 NAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISK 180
DV + +DS V + VS R ++ + D + + +
Sbjct: 462 ATIADVVAFADEVATASTDASDSAAAVEQTGRDVSDAVGRIRDRAADQRDQLEAVASETD 521
Query: 181 ETVSTMEEFEASMREMAQLAKEG---GEKGRQAAD----QIEEISRMMEKIEETVRGVAE 233
E +T+EE AS ++A+ ++ G+ G+ AA Q+EEI + V +
Sbjct: 522 EMSATIEEVAASADQVAETSQRAAALGDDGQAAAQDAVAQLEEIEDETQAAATAVDDLEA 581
Query: 234 MGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAED 293
IE I I+ I+EQTN+LALNA IEAARA + G GFAVVADE++ LA+ESK +A +
Sbjct: 582 KMSEIETIVAAITDIAEQTNMLALNANIEAARADQDGDGFAVVADEVKDLADESKASAAE 641
Query: 294 IRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREK 353
I L+ ++ + SV + E V E + E+ L+++A + E + E+
Sbjct: 642 IEALVAEVRAQTETSVAAMDRIQERVSDGVETVSETERSLSEIAGRIAEADTGVQEISNA 701
Query: 354 VIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVL 413
+ + + + + ++AA EET AE + AA EQ++ L ++ + L L
Sbjct: 702 MDDQAASVSDVTTAVGDVAALGEETATEAESTADAAAEQATTLSDVAAQTETLAEHAVAL 761
Query: 414 MEQISKFKLSKDHE 427
E ++F+++ D+E
Sbjct: 762 REHAAQFEVAADNE 775
>pir||T44978 transducer protein hemAT [validated] - Halobacterium salinarum
>gi|1654421|gb|AAB17881.1| (U75436) transducer HtB
protein [Halobacterium salinarum]
Length = 489
Score = 141 bits (351), Expect = 2e-32
Identities = 80/284 (28%), Positives = 151/284 (53%), Gaps = 9/284 (3%)
Query: 126 VRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDIS---KET 182
V H + ++E + V + + + R + + +M D R I +S +E
Sbjct: 211 VATHVEAPLSSLEATSQDVAERTDTMRA------RTDDQVDRMADVSREISSVSASVEEV 264
Query: 183 VSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENIT 242
ST ++ + + LA++G A + +I + + V + E +E++T
Sbjct: 265 ASTADDVRRTSEDAEALAQQGEAAADDALATMTDIDEATDGVTAGVEQLGERAADVESVT 324
Query: 243 NVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIG 302
VI I+EQTN+LALNA+IEAARAGEAG+GFAVVADE++ LAEES++ + + EL++Q+
Sbjct: 325 GVIDDIAEQTNMLALNASIEAARAGEAGEGFAVVADEVKALAEESREQSTRVEELVEQMQ 384
Query: 303 DKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIE 362
+ E+V+ + + + E ++E++ L ++ + +E+ E+ ++ E
Sbjct: 385 AETEETVDQLDEVNQRIGEGVERVEEAMETLQEITDAVEDAASGMQEVSTATDEQAVSTE 444
Query: 363 EGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKEL 406
E ++ + A E AA ++++ A ++Q ++E+RE+V +L
Sbjct: 445 EVAEMVDGVDDRAGEIAAALDDIADATDQQVRTVEEVRETVGKL 488
>pir||T44849 transducer protein car [validated] - Halobacterium salinarum
(strain S9) >gi|4469246|emb|CAB38318.1| (AJ132321) Car
protein [Halobacterium salinarum]
Length = 452
Score = 140 bits (350), Expect = 2e-32
Identities = 80/281 (28%), Positives = 147/281 (51%), Gaps = 7/281 (2%)
Query: 135 ENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMR 194
E++ ++++S+ +V + A E E + + D + +E S+ EE + +
Sbjct: 179 EHLSELSESIDEVGSFAEETEAFAGEEIERMEGVADEVSNQSATIEEIASSAEEVSQASQ 238
Query: 195 EMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNL 254
A EG + A D++ + E++ +T+ G+ + I + I+ I++QTN+
Sbjct: 239 RAQDRATEGEQTAETAIDRMGAVQESAERVNDTIDGLTSQADEMSEIIDAINDIADQTNM 298
Query: 255 LALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQ 314
LALNA+IEAARAGE G+GFAVVADE++ LAEES++ A++I ++I E VE T Q
Sbjct: 299 LALNASIEAARAGEKGEGFAVVADEVKSLAEESQERADEIEQMIV-------EMVETTDQ 351
Query: 315 GAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAAS 374
A+ + +T I+E+++ + + + ++E+ E V + ++ E +AA+
Sbjct: 352 TADRIGQTTTEIEEAITAVRETLDSLQEIRKAVDETATGVKEVAGATDDHAASTEQVAAT 411
Query: 375 AEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLME 415
+E E+ + S E + V E++ +VD L+E
Sbjct: 412 TDEAVDKLTELEDRLDNLSQIASEQHDRVAEIEDMVDELVE 452
>gi|10954729 hypothetical chemoreceptor gene~similar to orf2 gene in pTi15955
[Agrobacterium rhizogenes] >gi|8918729|dbj|BAA97794.1|
(AB039932) hypothetical chemoreceptor gene~similar to
orf2 gene in pTi15955 [Agrobacterium rhizogenes]
>gi|10567393|dbj|BAB16202.1| (AP002086) hypothetical
chemoreceptor gene~similar to orf2 gene in pTi15955
[Agrobacterium rhizogenes]
Length = 723
Score = 139 bits (348), Expect = 4e-32
Identities = 92/334 (27%), Positives = 173/334 (51%), Gaps = 36/334 (10%)
Query: 68 LQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVR 127
+ ++ + L ++A GDL+V +G + ++ LR+ + +L+++ +R
Sbjct: 399 ISNAVEAVASGLHKLASGDLTVT------IGRPLDGELDQLRQDFNASMLHLQATMRQIR 452
Query: 128 NHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTME 187
++ ++++ N Q+A++ + +A+ Q + + ET + ++
Sbjct: 453 DNVEMIQGNGNQMAEAAEDLAKRTEQQAASLE---------------------ETAAAVD 491
Query: 188 EFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISS 247
E ++R A+ AK+ + RQA ++ + ++ + + + E + IE IT VI
Sbjct: 492 EITVTVRSSAERAKDADQIVRQAKQSADDSAIVVNNAIDAMGRIEEASRQIEQITGVIDE 551
Query: 248 ISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGE 307
I+ QTNLLALNA +EAARAGEAGKGFAVVA E+R+LA+ S KAA++I+ LI + ++
Sbjct: 552 IAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSAKAAKEIKVLINKSTAEVNT 611
Query: 308 SVEVTQQ-GAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLR 366
+ Q+ GA + K ST+++ S ++ +A + + V Q + +
Sbjct: 612 GSHLVQETGAVLAKISTQIVTIS-QHVETIARGSHDQSSALQGVNSTVNQMDQMTQHN-- 668
Query: 367 FLENLAASAEETTAAAEEVSAAAEEQSSALQELR 400
AA EETTAA+ E+++ A+ + +Q+ R
Sbjct: 669 -----AAMVEETTAASRELASQADSLLALVQQFR 697
>pir||F70028 transmembrane receptor taxis protein homolog yvaQ - Bacillus
subtilis >gi|2635882|emb|CAB15374.1| (Z99121) similar to
transmembrane receptor taxis protein [Bacillus subtilis]
Length = 566
Score = 139 bits (348), Expect = 4e-32
Identities = 100/378 (26%), Positives = 195/378 (51%), Gaps = 40/378 (10%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVEDK------EIGGMGAKVRQGIEDLR------KSIS 113
+ + + I + + + IA+GDLS + + E+G + +++ + +LR K IS
Sbjct: 208 RNIVKPIIRMKESANHIAEGDLSNDMEALNSKDELGDLNEALQKMVGNLRDIVGYSKDIS 267
Query: 114 QLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTM- 172
VL+ N T+ + + +++ ++AE Q + +A E++++ T+++
Sbjct: 268 SRVLSSSQVLATATNETR---SGSKHITETMNEMAEGSEQQAQDAVTIAESMNEFTESID 324
Query: 173 -RYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGV 231
Y H I+ S + + +LA G E + Q++ I ++E+ VR +
Sbjct: 325 KAYNHGITISDTS---------QNVLELAVSGNENMATSLQQMKTIHHIVEEAVHKVRSL 375
Query: 232 AEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAA 291
+ + I + VI+ I+EQTNLL+LNAAIEAARAGE+GKGFAVVA+E+RKLA+ +
Sbjct: 376 EQHSQDINKLVQVINGIAEQTNLLSLNAAIEAARAGESGKGFAVVAEEVRKLADGVSDSV 435
Query: 292 EDIRELIKQIGDKI-------GESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEME 344
+DI ++ +I S ++G E + + + ++ +T VA+ ++E+
Sbjct: 436 QDITRIVNGTQQEIHTVITYLESSFTEVEKGTENLTDTGQAMQHIKQSVTHVADSIKEVT 495
Query: 345 VKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVK 404
+L + I + I EN+A+ +EE+ A EE + E+ + ++ ++ + +
Sbjct: 496 DGLKQLTNQSITINQSI-------ENIASVSEESAAGIEETFSITEQSAHSMDQVLLNAE 548
Query: 405 ELDRLVDVLMEQISKFKL 422
EL++L + L E++ +F +
Sbjct: 549 ELEQLANELNEKMGQFTI 566
>emb|CAA23676.1| (V00373) serine chemoreceptor [Escherichia coli]
>gi|223623|prf||0903250A protein,tsr transducer
[Escherichia coli]
Length = 536
Score = 139 bits (347), Expect = 5e-32
Identities = 100/327 (30%), Positives = 175/327 (52%), Gaps = 38/327 (11%)
Query: 72 IDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTK 131
++ ++ + IA GDL V+ E+ G ++ Q E LR +L+ + DVRN
Sbjct: 222 MNRLIDSIRHIAGGDL-VKPIEVDGSN-EMGQLAESLRHMQGELMRTVG----DVRNGAN 275
Query: 132 VMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEA 191
+ ++A N +S +++ ++ +ET ++ME+ A
Sbjct: 276 A-------IYSGASEIATGNNDLSSRTEQQAASL--------------EETAASMEQLTA 314
Query: 192 SMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQ 251
++++ A+ A++ A++ + ++++ + +T+R ++ + I +I +VI I+ Q
Sbjct: 315 TVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQ 374
Query: 252 TNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEV 311
TN+LALNAA+EAARAGE G+GFAVVA E+R LA+ S +AA +I+ LI+ +SV
Sbjct: 375 TNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIE-------DSVGK 427
Query: 312 TQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENL 371
G+ +V+++ E + E VS +T+V ++M E+ + E + Q G + E R +
Sbjct: 428 VDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQN 487
Query: 372 AASAEETTAAAEEVSAAAEEQSSALQE 398
AA EE+ AAA AA EEQ+S L E
Sbjct: 488 AALVEESAAAA----AALEEQASRLTE 510
>sp|P02942|MCP1_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN I (MCP-I) (SERINE CHEMORECEPTOR
PROTEIN) >gi|7428892|pir||QRECS serine chemoreceptor
protein - Escherichia coli >gi|148077|gb|AAA24700.1|
(J01718) methyl-accepting chemotaxis protein I
[Escherichia coli] >gi|2367378|gb|AAC77311.1| (AE000506)
methyl-accepting chemotaxis protein I, serine sensor
receptor [Escherichia coli K12]
Length = 551
Score = 139 bits (347), Expect = 5e-32
Identities = 100/327 (30%), Positives = 175/327 (52%), Gaps = 38/327 (11%)
Query: 72 IDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTK 131
++ ++ + IA GDL V+ E+ G ++ Q E LR +L+ + DVRN
Sbjct: 222 MNRLIDSIRHIAGGDL-VKPIEVDGSN-EMGQLAESLRHMQGELMRTVG----DVRNGAN 275
Query: 132 VMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEA 191
+ ++A N +S +++ ++ +ET ++ME+ A
Sbjct: 276 A-------IYSGASEIATGNNDLSSRTEQQAASL--------------EETAASMEQLTA 314
Query: 192 SMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQ 251
++++ A+ A++ A++ + ++++ + +T+R ++ + I +I +VI I+ Q
Sbjct: 315 TVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQ 374
Query: 252 TNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEV 311
TN+LALNAA+EAARAGE G+GFAVVA E+R LA+ S +AA +I+ LI+ +SV
Sbjct: 375 TNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIE-------DSVGK 427
Query: 312 TQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENL 371
G+ +V+++ E + E VS +T+V ++M E+ + E + Q G + E R +
Sbjct: 428 VDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQN 487
Query: 372 AASAEETTAAAEEVSAAAEEQSSALQE 398
AA EE+ AAA AA EEQ+S L E
Sbjct: 488 AALVEESAAAA----AALEEQASRLTE 510
>gb|AAD13223.1| (AF100302) methyl-accepting chemotaxis protein [Pseudomonas putida]
Length = 538
Score = 139 bits (346), Expect = 7e-32
Identities = 98/326 (30%), Positives = 164/326 (50%), Gaps = 19/326 (5%)
Query: 81 RIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQV 140
R+A GDLS + ++ G R + D+++S+ + N++N D++ + E++
Sbjct: 224 RVALGDLS-QSIQVSG-----RNEVTDVQQSVQAMQANLRNTLQDIQGSAAQLAAAAEEL 277
Query: 141 ADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLA 200
+ + A+ I++ + E Q +++M+ + + D + T + E A
Sbjct: 278 QTATESTAQGIHRQNDEMQMAATAVTEMSAAVDEVADNANRTSNASHE--------AMDL 329
Query: 201 KEGGEKGRQAADQIEEISRMMEKIEETVRGV---AEMGKSIENITNVISSISEQTNLLAL 257
+GG K Q E I R+ K+ ET R V AE +I + +VI +I+EQT LLAL
Sbjct: 330 ADGGRK--QVMLTRETIDRLSGKLNETTRTVFRLAEEASNIGRVLDVIRAIAEQTKLLAL 387
Query: 258 NAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAE 317
NAAIEAA AGEAG+GFAVVADE+R LA+ ++ + ++I +I I E V QQ E
Sbjct: 388 NAAIEAAHAGEAGRGFAVVADEVRNLAQRTQTSTQEIERMISAIQSVTQEGVRDVQQSCE 447
Query: 318 VVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEE 377
S + E+ LT +AE + E+ + ++ + E R L ++ +E+
Sbjct: 448 FAARSQTMSSEADQALTLIAERITEINGMNLVIASAAEEQAQVAREVDRNLVAISDISEQ 507
Query: 378 TTAAAEEVSAAAEEQSSALQELRESV 403
+TA ++ S A+EE + L V
Sbjct: 508 STAGVQQTSEASEELARLAANLNNLV 533
>pir||H83445 probable chemotaxis transducer PA1608 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947573|gb|AAG04997.1|AE004588_10 (AE004588)
probable chemotaxis transducer [Pseudomonas aeruginosa]
Length = 541
Score = 138 bits (345), Expect = 9e-32
Identities = 102/394 (25%), Positives = 190/394 (47%), Gaps = 57/394 (14%)
Query: 26 VFNSIPGAIVGGIVGVGIASYINYKGETKVKVSADIEEYEKQLQREIDEIVKILDRIAQG 85
V++S A++G ++ G+A+ + + + + + + E +++ + IA G
Sbjct: 184 VYHSAFAAVIGVLLVAGLATVVL------------AWLFTRSITQPLGEALRVAEVIASG 231
Query: 86 DLSVEDKEIG------------GMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVM 133
DL+ G GM A++RQ I+ + S +QL +AA ++ T+
Sbjct: 232 DLTSRIDTSGRDEPAKLLVALQGMQAQLRQTIQQIGSSATQLA----SAAEELSAVTEQG 287
Query: 134 KENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASM 193
++ Q D +Q A A+N+++ + N S +D
Sbjct: 288 NRSLTQQNDEIQMAATAVNEMTAAVEEVARNASSTSDA---------------------- 325
Query: 194 REMAQLAKEGGEKGRQAA-DQIEEISRMMEKIEET---VRGVAEMGKSIENITNVISSIS 249
+ +++ + GRQ + ++ I M E+++ T V G+AE + I + +VI I+
Sbjct: 326 ---SSASEQSAQNGRQRVLETVQAIRLMSEEVDNTSALVGGLAEKAQDISKVLDVIRGIA 382
Query: 250 EQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESV 309
EQTNLLALNAAIEAARAGE G+GFAVVADE+R LA ++++ +I ++I I + G +V
Sbjct: 383 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQESTREIEQMIANIQEGTGAAV 442
Query: 310 EVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLE 369
+ + E+ + + L ++AE + ++ + + Q+ + E R L
Sbjct: 443 GAMDSSSVRARNMLEIAEAAGLALNEIAERVGQINERTLVIASASEQQAQVAREVDRNLV 502
Query: 370 NLAASAEETTAAAEEVSAAAEEQSSALQELRESV 403
N+ + +T+A + + +AA++E S +L V
Sbjct: 503 NIRDISLQTSAGSNQTAAASQELSQLAIDLNNMV 536
>sp|P54576|MCPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPC >gi|7475621|pir||A69656
methyl-accepting chemotaxis protein mcpC - Bacillus
subtilis >gi|1280446|emb|CAA66052.1| (X97385)
methyl-accepting chemotaxis protein [Bacillus subtilis]
>gi|2633766|emb|CAB13268.1| (Z99111) methyl-accepting
chemotaxis protein [Bacillus subtilis]
Length = 654
Score = 138 bits (344), Expect = 1e-31
Identities = 98/369 (26%), Positives = 184/369 (49%), Gaps = 23/369 (6%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVEDK-----EIGGMGAKVRQGIEDLRKSISQLVLNIK 120
K + I +++ ++ GDL+V + E+G + +E++++ + Q+ L+
Sbjct: 297 KTITGPIQQLIVKTKAVSAGDLTVRAESKSKDEVGILTRDFNLMVENMKEMVEQVRLSSG 356
Query: 121 NAAIDVRNHTKVMKENIE---QVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHD 177
+ T V E E Q+A ++++VA ++ + E + E ++ +R I
Sbjct: 357 KVSDTSEQLTAVAAETNERSGQIAKAIEEVAAGASEQASEVETINEKSESLSTKIRQI-- 414
Query: 178 ISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQI----EEISRMMEKIEETVRGVAE 233
E ++E ++ +++ KG A Q+ E + +K E + +
Sbjct: 415 ---------AEEAGGIKERSKSSEDASYKGLHALGQLLMKSNEANMETKKEETMLLDLEN 465
Query: 234 MGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAED 293
K+IE + IS+IS+QTNLLALN +IEAARAGE+G+GFAVVADE+RKLAE+S + +
Sbjct: 466 QTKNIEEVVTAISNISDQTNLLALNRSIEAARAGESGRGFAVVADEVRKLAEQSALSTKH 525
Query: 294 IRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREK 353
I E +K I + E+ + + + I E+ L + M+ + + +
Sbjct: 526 ISETVKLIQLETKEASHAMVEASRMNDEQNSAIHETGEVLNTITAEMQSLVQGIDHIYAE 585
Query: 354 VIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVL 413
+ + E+ +++++A ++E+ AAAEEV+A+ +EQ L +++ S + L +
Sbjct: 586 IQRMSEEQLAISEAIQSISAISQESAAAAEEVNASTDEQLVTLDKVKHSTETLKHASQDV 645
Query: 414 MEQISKFKL 422
+ I KF L
Sbjct: 646 INTIRKFTL 654
>gb|AAG19801.1| (AE005064) Htr10 transducer; Htr10 [Halobacterium sp. NRC-1]
Length = 489
Score = 138 bits (344), Expect = 1e-31
Identities = 75/247 (30%), Positives = 140/247 (56%), Gaps = 3/247 (1%)
Query: 163 ENISKMTDTMRYIHDIS---KETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISR 219
+ + +M D R I +S +E ST ++ + + LA++G A + +I
Sbjct: 242 DQVDRMADVSREISSVSASVEEVASTADDVRRTSEDAEALAQQGEAAADDALATMTDIDE 301
Query: 220 MMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADE 279
+ + V + E +E++T VI I+EQTN+LALNA+IEAARAGEAG+GFAVVADE
Sbjct: 302 ATDGVTAGVEQLRERAADVESVTGVIDDIAEQTNMLALNASIEAARAGEAGEGFAVVADE 361
Query: 280 IRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEM 339
++ LAEES++ + + EL++Q+ + E+V+ + + + E ++E++ L ++ +
Sbjct: 362 VKALAEESREQSTRVEELVEQMQAETEETVDQLDEVNQRIGEGVERVEEAMETLQEITDA 421
Query: 340 MEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQEL 399
+E+ E+ ++ EE ++++ A E AA ++++ A ++Q ++E+
Sbjct: 422 VEDAASGMQEVSTATDEQAVSTEEVAEMVDDVDDRAGEIAAALDDIADATDQQVRTVEEV 481
Query: 400 RESVKEL 406
RE+V +L
Sbjct: 482 RETVGKL 488
>sp|Q02755|MCPC_SALTY METHYL-ACCEPTING CHEMOTAXIS CITRATE TRANSDUCER (CITRATE
CHEMORECEPTOR PROTEIN) >gi|421247|pir||A47178
methyl-accepting transmembrane citrate/phenol
chemoreceptor Tcp - Salmonella typhimurium
>gi|154381|gb|AAA27231.1| (L06029) chemoreceptor
[Salmonella typhimurium]
Length = 547
Score = 138 bits (343), Expect = 2e-31
Identities = 96/339 (28%), Positives = 175/339 (51%), Gaps = 41/339 (12%)
Query: 65 EKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAI 124
++ L R + I+ + IA GDL+ E + G R + QL +K
Sbjct: 214 QRVLLRPLQRIMAHIQTIADGDLTHEIEAEG-------------RSEMGQLAAGLKTMQQ 260
Query: 125 DVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVS 184
+ +++N + + +++ + +S +++ + +ET +
Sbjct: 261 SLIRTVSAVRDNADSIYTGAGEISAGSSDLSSRTEQQASAL--------------EETAA 306
Query: 185 TMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNV 244
+ME+ A++R+ A++ + A++ + R+++ + T+ +AE + I +IT+V
Sbjct: 307 SMEQLTATVRQNTDNARQATGLAKTASETARKGGRVVDNVVSTMNDIAESSEKIVDITSV 366
Query: 245 ISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDK 304
I I+ QTN+LALNAA+EAARAGE G+GFAVVA E+R LA S +AA++I+ LI+
Sbjct: 367 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVLIEN---- 422
Query: 305 IGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEG 364
SV G+ V+ + E +KE V+ +T+V ++M E+ + E + + Q + + E
Sbjct: 423 ---SVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEM 479
Query: 365 LRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESV 403
+ A+ EE+ AAA AA E+Q++ ELR++V
Sbjct: 480 DSVTQQNASLVEESAAAA----AALEDQAN---ELRQAV 511
>gb|AAG13635.1| (AF036940) putative chemotaxis protein [Ralstonia sp. U2]
Length = 423
Score = 137 bits (342), Expect = 2e-31
Identities = 91/337 (27%), Positives = 179/337 (53%), Gaps = 51/337 (15%)
Query: 72 IDEIVKILDRIAQGDLSVE-----DKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDV 126
++E +++ +IAQGDL+ + + E+G ++ + D++ S+S +V +++
Sbjct: 70 LEEALRLAGQIAQGDLTGQIVTRSNDEVG----QLITALADMQGSLSSMVAHVR------ 119
Query: 127 RNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTM 186
+N E + + ++A+ + +S + + ++ +ET ++M
Sbjct: 120 --------QNAESLEAASSEIAQGNHDLSARTESQASSL--------------EETAASM 157
Query: 187 EEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVIS 246
EE +++R+ A A+ + + A+ + + ++ T+ G+ E + I +I +VI
Sbjct: 158 EELGSTVRQNADNARHANQLAQSASTVAVQGGEAVAQVVNTMTGINESSRKIADIISVID 217
Query: 247 SISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIG 306
I+ QTN+LALNAA+EAARAGE G+GFAVVA E+R LA+ S +AA++I+ L I
Sbjct: 218 GIAFQTNILALNAAVEAARAGEHGRGFAVVATEVRSLAQRSAEAAKEIKTL-------IN 270
Query: 307 ESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLR 366
+SV +QG+ +V + ++E V + +V ++M E+ ++E + V Q GE +
Sbjct: 271 DSVGRVEQGSALVDQAGTTMREVVDSIRRVTDIMGEISAASTEQSQGVAQVGEAV----- 325
Query: 367 FLENLAASAEETTAAAEEVSAAAEEQSSALQELRESV 403
N+ + ++ A E+++AAA +EL ++V
Sbjct: 326 --TNMDQATQQNAALVEQMAAAASRLKGQSEELVQTV 360
>sp|Q48316|HTR3_HALSA HALOBACTERIAL TRANSDUCER PROTEIN III >gi|1435129|emb|CAA64840.1|
(X95588) halobacterial transducer protein III
[Halobacterium salinarum]
Length = 481
Score = 137 bits (342), Expect = 2e-31
Identities = 102/378 (26%), Positives = 182/378 (47%), Gaps = 31/378 (8%)
Query: 43 IASYINYKGETK-----VKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGM 97
IA+ + + GE + V+ + Y+ +LQ E+V LD + G
Sbjct: 118 IATPVYHTGEFRGVIEIVQDRSSSARYQSELQALFGELVDTLDAY----------DAGRF 167
Query: 98 GAKVRQGIED--LRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVS 155
A V ED L Q+ N+ + H + ++E++ + Q V+E+ ++
Sbjct: 168 DATVDIAAEDTLLDDEYIQIGRNLTEFGDTLAAHITEVHNDVERLEAASQAVSESSAEID 227
Query: 156 IEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIE 215
+ + N+S + + + +E ST +E + +LA +G AAD +
Sbjct: 228 ELSTAQSTNVSTVATEVETLSATVQEIASTADEVVDTSATAERLADDGSAAASDAADMMA 287
Query: 216 EISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAV 275
+++ + + V + + I+ + +VI+ I+EQTN+LALNA+IEAARAGE G+GFAV
Sbjct: 288 DVATAADSVTSDVEALQNRIEDIDEVVDVITGIAEQTNMLALNASIEAARAGEVGEGFAV 347
Query: 276 VADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQ 335
VA+E++ LAE+++ A I L+ +I ++V ++V T+T+ I+++V+ +
Sbjct: 348 VAEEVKALAEDAQSNAGHIESLVSEIQRDTADTV------TDLV-TTTDRIEDAVAQVED 400
Query: 336 VAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAA------- 388
EE+ E + Q + E E +AA +ET A++++ A
Sbjct: 401 AMASFEEIVTAVEATAEGIEQVSDATNEQAASAEEIAAMVDETADLADDITTAVADIVSQ 460
Query: 389 AEEQSSALQELRESVKEL 406
E QS+ L +L ESV EL
Sbjct: 461 TEAQSTILXDLDESVSEL 478
>gb|AAG19717.1| (AE005058) Htr9 transducer; Htr9 [Halobacterium sp. NRC-1]
Length = 481
Score = 137 bits (342), Expect = 2e-31
Identities = 102/378 (26%), Positives = 182/378 (47%), Gaps = 31/378 (8%)
Query: 43 IASYINYKGETK-----VKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGM 97
IA+ + + GE + V+ + Y+ +LQ E+V LD + G
Sbjct: 118 IATPVYHTGEFRGVIEIVQDRSSSARYQSELQALFGELVDTLDAY----------DAGRF 167
Query: 98 GAKVRQGIED--LRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVS 155
A V ED L Q+ N+ + H + ++E++ + Q V+E+ ++
Sbjct: 168 DATVDIAAEDTLLDDEYIQIGRNLTEFGDTLAAHITEVHNDVERLEAASQAVSESSAEID 227
Query: 156 IEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIE 215
+ + N+S + + + +E ST +E + +LA +G AAD +
Sbjct: 228 ELSTAQSTNVSTVATEVETLSATVQEIASTADEVVDTSATAERLADDGSAAASDAADMMA 287
Query: 216 EISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAV 275
+++ + + V + + I+ + +VI+ I+EQTN+LALNA+IEAARAGE G+GFAV
Sbjct: 288 DVATAADSVTSDVEALQNRIEDIDEVVDVITGIAEQTNMLALNASIEAARAGEEGEGFAV 347
Query: 276 VADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQ 335
VA+E++ LAE+++ A I L+ +I ++V ++V T+T+ I+++V+ +
Sbjct: 348 VAEEVKALAEDAQSNAGHIESLVSEIQRDTADTV------TDLV-TTTDRIEDAVAQVED 400
Query: 336 VAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAA------- 388
EE+ E + Q + E E +AA +ET A++++ A
Sbjct: 401 AMASFEEIVTAVEATAEGIEQVSDATNEQAASAEEIAAMVDETADLADDITTAVADIVSQ 460
Query: 389 AEEQSSALQELRESVKEL 406
E QS+ L +L ESV EL
Sbjct: 461 TEAQSAMLHDLDESVSEL 478
>pir||S56581 methyl-accepting chemotaxis protein I - Escherichia coli
>gi|537197|gb|AAA97252.1| (U14003) CG Site No. 63;
alternate gene name cheD [Escherichia coli]
Length = 551
Score = 137 bits (341), Expect = 3e-31
Identities = 99/327 (30%), Positives = 174/327 (52%), Gaps = 38/327 (11%)
Query: 72 IDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTK 131
++ ++ + IA GDL V+ E+ G ++ Q E LR +L+ + DVRN
Sbjct: 222 MNRLIDSIRHIAGGDL-VKPIEVDGSN-EMGQLAESLRHMQGELMRTVG----DVRNGAN 275
Query: 132 VMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEA 191
+ ++A N +S +++ ++ +ET ++ME+ A
Sbjct: 276 A-------IYSGASEIATGNNDLSSRTEQQAASL--------------EETAASMEQLTA 314
Query: 192 SMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQ 251
++++ A+ A++ A++ + ++++ + +T+R ++ + I +I +VI I+ Q
Sbjct: 315 TVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQ 374
Query: 252 TNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEV 311
TN+LALNAA+EAARAGE G+GFAVVA E+R LA+ S +AA +I+ LI+ +SV
Sbjct: 375 TNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIE-------DSVGK 427
Query: 312 TQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENL 371
G+ +V+++ E + E VS +T+V ++M E+ + E + Q G + E R +
Sbjct: 428 VDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQN 487
Query: 372 AASAEETTAAAEEVSAAAEEQSSALQE 398
AA EE+ AAA AA EE +S L E
Sbjct: 488 AALVEESAAAA----AALEEXASRLTE 510
>gi|10954717 hypothetical chemoreceptor gene~similar to orf2 gene in pTi15955
[Agrobacterium rhizogenes] >gi|8918717|dbj|BAA97782.1|
(AB039932) hypothetical chemoreceptor gene~similar to
orf2 gene in pTi15955 [Agrobacterium rhizogenes]
>gi|10567381|dbj|BAB16190.1| (AP002086) hypothetical
chemoreceptor gene~similar to orf2 gene in pTi15955
[Agrobacterium rhizogenes]
Length = 758
Score = 137 bits (341), Expect = 3e-31
Identities = 99/370 (26%), Positives = 187/370 (49%), Gaps = 30/370 (8%)
Query: 39 VGVGIASYINYKGETKVKVSADIEEYEKQLQREIDEIVKILDRI-AQGDLSVEDKEIGGM 97
+G+ + +++ KV + E ++ Q E + ++ DR + +L V E+
Sbjct: 397 IGIMARALESFRQSAADKVRMEEEAIQRNGQLEHERQLRETDRARSAAELEVAVSELATG 456
Query: 98 GAKVRQGIEDLR------KSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAI 151
+ +G D R S+ QL + + ++ + +++N+E + + Q+AEA
Sbjct: 457 LKNLAEGRLDHRIEHPFAPSLDQLRQDFNGSMTRLQATMRQIRDNVEMIQGNGNQMAEAA 516
Query: 152 NQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAA 211
+S +++ ++ +ET + ++E ++R A+ AK+ + RQA
Sbjct: 517 EDLSKRTEQQAASL--------------EETAAAVDEITVTVRSSAERAKDADQIVRQAK 562
Query: 212 DQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGK 271
++ + +++ + + + E + IE IT VI I+ QTNLLALNA +EAARAG+AGK
Sbjct: 563 RSADDSAIVVDNAIDAMGRIEEASRQIEQITGVIDEIAFQTNLLALNAGVEAARAGDAGK 622
Query: 272 GFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQ-GAEVVKTSTEVIKESV 330
GFAVVA E+R+LA+ S KAA++I+ LI + ++ + Q+ GA + K ST+++ S
Sbjct: 623 GFAVVAQEVRELAQRSAKAAKEIKVLINKSTAEVNTGSHLVQETGAVLAKISTQIVTIS- 681
Query: 331 SYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAE 390
++ +A + + V Q + + AA EETTAA+ E+++ A+
Sbjct: 682 HHVETIARGSHDQSCALQGVNSTVNQMDQMTQHN-------AAMVEETTAASRELASQAD 734
Query: 391 EQSSALQELR 400
+ +Q+ R
Sbjct: 735 SLLALVQQFR 744
>sp|P33741|HTRI_HALHA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (METHYL-ACCEPTING PHOTOTAXIS
PROTEIN I) (MPP-I) >gi|421715|pir||A47190 transducer
protein htrI [validated] - Halobacterium salinarum
>gi|305352|gb|AAA72315.1| (L05603) sensory rhodopsin I
transducer [Halobacterium halobium]
>gi|10581131|gb|AAG19913.1| (AE005075) Htr1 transducer;
Htr1 [Halobacterium sp. NRC-1]
Length = 536
Score = 136 bits (339), Expect = 4e-31
Identities = 77/343 (22%), Positives = 178/343 (51%), Gaps = 7/343 (2%)
Query: 86 DLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQ 145
D+ + + + +G Q ++DL+ ++ + A ++ T+ M E + S
Sbjct: 175 DVDTDHEAMETVGTAFNQMMDDLQATVR----TVTTVADEIEAKTERMSETSADIEASAG 230
Query: 146 QVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGE 205
EA++++ +A ++ + D ++ + ++E +T+++ + ++A + +
Sbjct: 231 DTVEAVSKIESQANDQRTELDSAADDVQQVSASAEEIAATIDDLASRSEDVATASDAARD 290
Query: 206 KGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAAR 265
+ A D++ I ++ V + + I +I +VI+ I EQTN+LALNA+IEAAR
Sbjct: 291 SSKSALDEMSSIETEVDDAVGQVEQLRDQVAEITDIVDVITDIGEQTNMLALNASIEAAR 350
Query: 266 AG--EAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTST 323
AG G GF+VVADE++ LAEE++ A +I +++++ + + QQ V++ +
Sbjct: 351 AGGNADGDGFSVVADEVKDLAEETQDRANEIAAVVEKVTAQTEDVTASIQQTRTRVESGS 410
Query: 324 EVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAE 383
E ++ ++ + +A+ + E+ E++ ++ E ++ +E +A +++TTA A
Sbjct: 411 ETVESTLRDIRTIADSIAEVSNSIDEIQRTTSEQAETVQSTATSVERVAGLSDDTTALAS 470
Query: 384 EVSAAAEEQSSALQELRESVKEL-DRLVDVLMEQISKFKLSKD 425
+ +A Q + +E+ S+++ + V+ L +++ F ++ +
Sbjct: 471 DAESAVIGQRESAEEIAASLEQFQNTAVEQLQSRVASFTVATE 513
>pir||T44964 transducer protein car [validated] - Halobacterium salinarum
(strain Flx15) >gi|2072795|gb|AAC45264.1| (U74668)
soluble transducer protein HtH [Halobacterium salinarum]
Length = 451
Score = 136 bits (339), Expect = 4e-31
Identities = 84/283 (29%), Positives = 150/283 (52%), Gaps = 15/283 (5%)
Query: 140 VADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQL 199
V + + +++E+I++V A+ + K + M D +T+EE +S E++Q
Sbjct: 177 VGEHLSELSESIDKVGSFAEETEPFAGKEIERMEGFADKVSNQSATIEEIASSAEEVSQA 236
Query: 200 -------AKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQT 252
A EG + A D++ + E++ +T+ G+ + I + I+ I++QT
Sbjct: 237 SQRAQDRATEGEQTAETAIDRMGAVQESAERVNDTIDGLTSQADEMSEIIDAINDIADQT 296
Query: 253 NLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVT 312
N+LALNA+IEAARAGE G+GFAVVADE++ LAEES++ A++I ++I E VE T
Sbjct: 297 NMLALNASIEAARAGEKGEGFAVVADEVKSLAEESQERADEIEQMIV-------EMVETT 349
Query: 313 QQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLA 372
Q A+ + +T I+E+++ + + + ++E+ E V +E + E +A
Sbjct: 350 DQTADRIGQTTTEIEEAITAVRETLDSLQEIRNAVDETATGV-KEVAGARDHAASTEQVA 408
Query: 373 ASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLME 415
A+ +E E+ + S E + V E++ +VD L+E
Sbjct: 409 ATTDEAVDKLTELEDRLDNLSQIASEQHDRVAEIEDMVDELVE 451
>pir||G82490 methyl-accepting chemotaxis protein VCA0176 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657567|gb|AAF96089.1| (AE004358) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 644
Score = 135 bits (337), Expect = 8e-31
Identities = 113/376 (30%), Positives = 173/376 (45%), Gaps = 47/376 (12%)
Query: 39 VGVGIASYINYKGETKVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMG 98
+G+ +A+ I K D+ + L + I+ VK D IAQ K G
Sbjct: 307 MGIFLANSIAMPINQIAKRFTDLGRGDGDLSQRIE--VKGNDEIAQ-----LSKGFNGFI 359
Query: 99 AKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEA 158
K+ Q I+D+ ++ +L + AA V V +N +Q D QV AINQ+
Sbjct: 360 EKIHQSIKDVAQTSRELQV----AAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGA-- 413
Query: 159 QREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEE-I 217
T+S + A+ E A A ++GR ++ +E I
Sbjct: 414 -----------------------TISEIASNAATAAETANQASGNADQGRNVVNKAKEAI 450
Query: 218 SRMMEKIEET---VRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFA 274
SR+ IE T V +A + I +I + I ISEQTNLLALNAAIEAARAG+ G+GFA
Sbjct: 451 SRLAHDIENTGKVVEQLASTTQEIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFA 510
Query: 275 VVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLT 334
VVADE+R LA + + E+I+++I Q+ + +V G V E+V L
Sbjct: 511 VVADEVRNLASRTASSTEEIQKMINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLM 570
Query: 335 QVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSS 394
+++ + ++ ++ Q EE + + + EE A E ++ AEE +
Sbjct: 571 SISD-------RIHDISDRNTQVATATEEQSTVVHTINQNIEEINAINEVTTSTAEELAD 623
Query: 395 ALQELRESVKELDRLV 410
A + LRE LD+LV
Sbjct: 624 ASKSLRELSGRLDKLV 639
>sp|P21822|MCPS_ENTAE METHYL-ACCEPTING CHEMOTAXIS SERINE TRANSDUCER >gi|95558|pir||C32302
serine transducer tse - Enterobacter aerogenes
>gi|148349|gb|AAA24797.1| (M26411) tse [Enterobacter
aerogenes]
Length = 557
Score = 134 bits (335), Expect = 1e-30
Identities = 92/336 (27%), Positives = 177/336 (52%), Gaps = 49/336 (14%)
Query: 68 LQREIDEIVKILDRIAQGDLS-----VEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNA 122
L R ++ +++ + RIA GDL+ EIG + A ++ +L +++S +
Sbjct: 220 LVRPLNRMIEHIKRIASGDLTQPIPVTSRNEIGVLAASLKHMQNELIETVSGV------- 272
Query: 123 AIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKET 182
++ ++ D + A N +S +++ + +ET
Sbjct: 273 -----------RQGADRSIDGASESAAGNNDLSSRTEQQAAAL--------------EET 307
Query: 183 VSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENIT 242
++ME+ A++++ A+ A++ + A++ ++ +++ + ET+ +A + I +IT
Sbjct: 308 AASMEQLTATVKQNAENARQASQLALSASETAQKGGKVVANVVETMHDIASSSQKIADIT 367
Query: 243 NVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIG 302
VI I+ QTN+LALNAA+EAARAGE G+ FAVVA E+R LA+ S +AA++I+ LI+
Sbjct: 368 GVIDVIAFQTNILALNAAVEAARAGEQGRAFAVVAGEVRNLAQRSAQAAKEIKALIE--- 424
Query: 303 DKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIE 362
+SV G+ +V+++ + + + V+ +T+V ++M E+ + E + Q G+ +
Sbjct: 425 ----DSVNRVDMGSVLVESAGDTMGDIVNAVTRVTDIMGEIASASDEQSRGIDQVGQAVR 480
Query: 363 EGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQE 398
E R + A+ EE+ +A AA EEQ+S L +
Sbjct: 481 EMDRVTQQNASLVEESASA-----AALEEQASLLTQ 511
>pir||T44597 transducer protein htpVI [similarity] - Halobacterium salinarum
>gi|1654425|gb|AAB17883.1| (U75438) transducer HtD
protein [Halobacterium salinarum]
Length = 777
Score = 134 bits (335), Expect = 1e-30
Identities = 97/354 (27%), Positives = 169/354 (47%), Gaps = 14/354 (3%)
Query: 82 IAQGDLSVEDKEIGGMGAKVRQG-IEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQV 140
+A GDL+V + A V Q + D+R++ +++ +++ + +
Sbjct: 427 VAAGDLTVR------LDADVEQAAMADMRRAFNEMAADMEATIAERGAFADEVATASTDA 480
Query: 141 ADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFE---ASMREMA 197
+DS V + VS R ++ + D + + + E +T+EE + E +
Sbjct: 481 SDSAAAVEQTGRDVSTAVGRIRDRAADQRDQLEAVASETDEMSATIEEVARVAGQVAETS 540
Query: 198 QLAKEGGEKGRQAAD----QIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTN 253
Q A G+ G+ AA Q+EEI + V + IE I I+ I+EQTN
Sbjct: 541 QRAAALGDDGQAAAQDAVAQLEEIEDETQAAATAVDDLEAKMSEIETIVAAITDIAEQTN 600
Query: 254 LLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQ 313
+LALNA IEAARA + G GFAVVADE++ LA+ESK A +++ L+ ++ + SV
Sbjct: 601 MLALNANIEAARADQDGDGFAVVADEVKDLADESKALAAEMQALVAEVRAQTETSVAAMD 660
Query: 314 QGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAA 373
+ E V E + E+ L+ +A + E + E+ + + + + + ++AA
Sbjct: 661 RIQERVSDGVETVSETERSLSDIAGRIAEPDTGVQEISNAMDDQAASVSDVTTAVGDVAA 720
Query: 374 SAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKLSKDHE 427
EET AE AA EQ++ L ++ + L L E ++F+++ D+E
Sbjct: 721 LGEETATEAESTRDAAAEQATTLSDVAAQTETLAEHAVALREHAAQFEVAADNE 774
>sp|P05704|MCP3_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN III (MCP-III) (RIBOSE AND
GALACTOSE CHEMORECEPTOR PROTEIN) >gi|7428893|pir||QREC3M
methyl-accepting chemotaxis protein III - Escherichia
coli >gi|1742320|dbj|BAA15044.1| (D90781)
Methyl-accepting chemotaxis protein III (MCP-III)
(Ribose and galactose chemoreceptor protein).
[Escherichia coli] >gi|1742331|dbj|BAA15053.1| (D90782)
Methyl-accepting chemotaxis protein III (MCP-III)
(Ribose and galactose chemoreceptor protein).
[Escherichia coli] >gi|1787690|gb|AAC74503.1| (AE000239)
methyl-accepting chemotaxis protein III, ribose sensor
receptor [Escherichia coli K12]
>gi|4481751|gb|AAA81329.2| (K02073) Trg sensory
transducer protein [Escherichia coli]
Length = 546
Score = 134 bits (333), Expect = 2e-30
Identities = 95/329 (28%), Positives = 166/329 (49%), Gaps = 38/329 (11%)
Query: 70 REIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNH 129
R + + +++IA GDL++ D+ G R I +L H
Sbjct: 228 RPLQHAAQRIEKIASGDLTMNDEPAG-------------RNEIGRL-----------SRH 263
Query: 130 TKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEF 189
+ M+ ++ +V+Q AE I + + E ++S T+ + +T ++ME+
Sbjct: 264 LQQMQHSLGMTVGTVRQGAEEIYRGTSEISAGNADLSSRTEEQAAAIE---QTAASMEQL 320
Query: 190 EASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSIS 249
A++++ A A + ++A+ + + + + + +T+ ++ K I IT VI+SI+
Sbjct: 321 TATVKQNADNAHHASKLAQEASIKASDGGQTVSGVVKTMGAISTSSKKISEITAVINSIA 380
Query: 250 EQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESV 309
QTN+LALNAA+EAARAGE G+GFAVVA E+R LA S +AA++I LI ESV
Sbjct: 381 FQTNILALNAAVEAARAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLIS-------ESV 433
Query: 310 EVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLE 369
+ G++ V T+ + + V + V +M+E+ + E + Q + I E + +
Sbjct: 434 RLIDLGSDEVATAGKTMSTIVDAVASVTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQ 493
Query: 370 NLAASAEETTAAAEEVSAAAEEQSSALQE 398
A+ EE +AAA + EEQ++ L E
Sbjct: 494 QNASLVEEASAAA----VSLEEQAARLTE 518
>pir||D83297 probable chemotaxis transducer PA2788 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948870|gb|AAG06176.1|AE004706_6 (AE004706) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 531
Score = 134 bits (333), Expect = 2e-30
Identities = 91/310 (29%), Positives = 160/310 (51%), Gaps = 21/310 (6%)
Query: 91 DKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEA 150
D EIG ++ G E +R+ +S L+ N+K +A E + VA++++Q A
Sbjct: 232 DNEIG----RIVAGYERMRQDVSGLLANVKRSAA----------ETDKDVAEALEQALGA 277
Query: 151 INQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQA 210
+QV+ R+ +++ ++ M + E S R+ A LA EG A
Sbjct: 278 GDQVA----RQHQDLDQVATAMNEMSATVAEVARHANHAAHSTRDAAALAHEGRRLVEHA 333
Query: 211 ADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAG 270
+ Q ++ +E+ + + + S+ + VISSI+EQTNLLALNAAIEAARAGEAG
Sbjct: 334 SSQTGALAEELEQTALALNTLHQHAGSVGQVLTVISSIAEQTNLLALNAAIEAARAGEAG 393
Query: 271 KGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESV 330
+GFAVVADE+R LA ++++ ++I+ LI+Q+ D ++V + A +++ +
Sbjct: 394 RGFAVVADEVRSLANRTQQSTQEIQGLIEQLQDGANDAVAAMRGSASHAQSNLVEADSAA 453
Query: 331 SYLTQVAEMMEEME---VKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSA 387
L ++ +EE++ + + E+ Q + I+ + + L+ A E TAA +
Sbjct: 454 QALGRIVATVEELDGLNQQIATAAEEQSQVAQDIDRNITNVSGLSEQAHEGTAAVLSANQ 513
Query: 388 AAEEQSSALQ 397
+E + L+
Sbjct: 514 RVKEHMAGLR 523
>sp|P02941|MCP2_SALTY METHYL-ACCEPTING CHEMOTAXIS PROTEIN II (MCP-II) (ASPARTATE
CHEMORECEPTOR PROTEIN)
Length = 553
Score = 132 bits (330), Expect = 5e-30
Identities = 88/292 (30%), Positives = 163/292 (55%), Gaps = 17/292 (5%)
Query: 107 DLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENIS 166
DL K+ L ++ +N ++ + M+ ++ V++ ++AI + E ++S
Sbjct: 234 DLTKT---LTVSGRNGIGELAGTVEHMQRSLIDTVTQVREGSDAIYSGTSEIAAGNTDLS 290
Query: 167 KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEE 226
T+ +ET ++ME+ A++++ A A++ + + A++ ++++ +
Sbjct: 291 SRTEQQA---SALEETAASMEQLTATVKQNADNARQASQLAQSASETARHGGKVVDGVVN 347
Query: 227 TVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEE 286
T+ +A+ K I +I +VI I+ QTN+LALNAA+EAARAGE G+GFAVVA E+R LA
Sbjct: 348 TMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASR 407
Query: 287 SKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVK 346
S +AA++I+ LI+ +SV G+ +V+++ E + + V+ +T+VA++M E+
Sbjct: 408 SAQAAKEIKALIE-------DSVSRVDTGSVLVESAGETMTDIVNAVTRVADIMGEIASA 460
Query: 347 ASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQE 398
+ E + Q + E R + A+ +E+ AAA AA EEQ+S L +
Sbjct: 461 SDEQSRGIDQVALAVSEMDRVTQQNASLVQESAAAA----AALEEQASRLTQ 508
>pir||B82486 hemolysin secretion protein HylB VCA0220 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657614|gb|AAF96132.1| (AE004362) hemolysin
secretion protein HylB [Vibrio cholerae]
Length = 548
Score = 132 bits (330), Expect = 5e-30
Identities = 90/297 (30%), Positives = 156/297 (52%), Gaps = 20/297 (6%)
Query: 121 NAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISK 180
NA ID +H+ IE+VA++ +++A + VS A Q N + D +
Sbjct: 260 NAFIDKVHHS------IEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIH 313
Query: 181 ETVSTMEEFEASMREMAQLAKEG----GEKGRQAADQIEEISRMMEKIEETVRGVAEMGK 236
E +T+ E ++ A +AK+ GE + + I ++ +++ + V+ +
Sbjct: 314 ELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLAT 373
Query: 237 SIENITNV---ISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAED 293
I I++ I SISEQTNLLALNAAIEAARAGE G+GFAVVADE+R LA S + E+
Sbjct: 374 QINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEE 433
Query: 294 IRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREK 353
I+++I ++ + +VE ++G ++ ++V+ V + + + + E+ + ++ ++
Sbjct: 434 IQQVINRLQTESTRAVEAMEKG----RSQSDVV---VEFSAKANQSLTEINSQIDQINDQ 486
Query: 354 VIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLV 410
IQ EE +E++ + E+ E S A+E S A L+ +LD+LV
Sbjct: 487 NIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLV 543
>sp|P15492|HLYB_VIBCH HEMOLYSIN SECRETION PROTEIN PRECURSOR >gi|79266|pir||S15910
hemolysin-releasing protein - Vibrio cholerae
>gi|2190531|emb|CAA68638.1| (Y00557) methyl accepting
chemotaxis protein [Vibrio cholerae]
Length = 548
Score = 132 bits (329), Expect = 7e-30
Identities = 92/298 (30%), Positives = 160/298 (52%), Gaps = 22/298 (7%)
Query: 121 NAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTD----TMRYIH 176
NA ID +H+ IE+VA++ +++A + VS A Q N + D IH
Sbjct: 260 NAFIDKVHHS------IEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIH 313
Query: 177 DISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEE-ISRMMEKIEETVRGVAEMG 235
++ TVS + A R++A A +G++ +++ I ++ +++ + V+ +
Sbjct: 314 ELGA-TVSEIASNAAMARDVANEATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLA 372
Query: 236 KSIENITNV---ISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAE 292
I I++ I SISEQTNLLALNAAIEAARAGE G+GFAVVADE+R LA S + E
Sbjct: 373 TQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTE 432
Query: 293 DIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELRE 352
+I+++I ++ + +VE ++G ++ ++V+ V + + + + E+ + ++ +
Sbjct: 433 EIQQVINRLQTESTRAVEAMEKG----RSQSDVV---VEFSAKANQSLTEINSQIDQIND 485
Query: 353 KVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLV 410
+ IQ EE +E++ + E+ E S A+E S A L+ +LD+LV
Sbjct: 486 QNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLV 543
>gb|AAA23566.1| (M13463) methyl-accepting chemotaxis protein II [Escherichia coli]
Length = 553
Score = 132 bits (329), Expect = 7e-30
Identities = 84/274 (30%), Positives = 153/274 (55%), Gaps = 14/274 (5%)
Query: 125 DVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVS 184
D+ M+ ++ V++ ++AI + E ++S T+ +ET +
Sbjct: 249 DLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQA---SALEETAA 305
Query: 185 TMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNV 244
+ME+ A++++ A A++ + + A+D + ++++ + +T+ +A+ K I +I +V
Sbjct: 306 SMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMHEIADSSKKIADIISV 365
Query: 245 ISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDK 304
I I+ QTN+LALNAA+EAARAGE G+GFAVVA E+R LA S +AA++I+ LI+
Sbjct: 366 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIE----- 420
Query: 305 IGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEG 364
+SV G+ +V+++ E + V+ +T+V ++M E+ + E + Q + E
Sbjct: 421 --DSVSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEM 478
Query: 365 LRFLENLAASAEETTAAAEEVSAAAEEQSSALQE 398
R + A+ +E+ AAA AA EEQ+S L +
Sbjct: 479 DRVTQQNASLVQESAAAA----AALEEQASRLTQ 508
>sp|P07017|MCP2_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN II (MCP-II) (ASPARTATE
CHEMORECEPTOR PROTEIN) >gi|7428891|pir||QRECM4 aspartate
chemoreceptor protein - Escherichia coli
>gi|1736539|dbj|BAA15702.1| (D90830) Methyl-accepting
chemotaxis protein II (MCP-II) (Aspartate chemoreceptor
protein). [Escherichia coli] >gi|1736545|dbj|BAA15707.1|
(D90831) Methyl-accepting chemotaxis protein II (MCP-II)
(Aspartate chemoreceptor protein). [Escherichia coli]
>gi|1788195|gb|AAC74956.1| (AE000282) methyl-accepting
chemotaxis protein II, aspartate sensor receptor
[Escherichia coli K12]
Length = 553
Score = 132 bits (329), Expect = 7e-30
Identities = 84/274 (30%), Positives = 153/274 (55%), Gaps = 14/274 (5%)
Query: 125 DVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVS 184
D+ M+ ++ V++ ++AI + E ++S T+ +ET +
Sbjct: 249 DLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQA---SALEETAA 305
Query: 185 TMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNV 244
+ME+ A++++ A A++ + + A+D + ++++ + +T+ +A+ K I +I +V
Sbjct: 306 SMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMHEIADSSKKIADIISV 365
Query: 245 ISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDK 304
I I+ QTN+LALNAA+EAARAGE G+GFAVVA E+R LA S +AA++I+ LI+
Sbjct: 366 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIE----- 420
Query: 305 IGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEG 364
+SV G+ +V+++ E + V+ +T+V ++M E+ + E + Q + E
Sbjct: 421 --DSVSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEM 478
Query: 365 LRFLENLAASAEETTAAAEEVSAAAEEQSSALQE 398
R + A+ +E+ AAA AA EEQ+S L +
Sbjct: 479 DRVTQQNASLVQESAAAA----AALEEQASRLTQ 508
>gb|AAD13198.1| (AF096317) putative methyl-accepting chemotaxis protein
[Desulfovibrio gigas]
Length = 649
Score = 132 bits (329), Expect = 7e-30
Identities = 88/321 (27%), Positives = 166/321 (51%), Gaps = 22/321 (6%)
Query: 79 LDRIAQGDLSVE-------DKEIGGMGAKV--RQGIEDLRKSISQLVLNIKNAAIDVRNH 129
LD++++GDL +E D + +G+ V + + + K +++ L IK A ++
Sbjct: 268 LDKLSRGDLGIEVMPRSEQDTLMRAIGSIVLAERDVAEKMKQVAEGDLRIKVAPRSEQD- 326
Query: 130 TKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEF 189
E + +A+ +++V + +++V AQ +M+ + + + E +++E+
Sbjct: 327 -----ELVRAIAEMIERVTQIVDEVRTGAQNVASGDEEMSASSETLSQGASEQAASVEQC 381
Query: 190 EASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSIS 249
+SM EM+ + E RQ + ++ ++ E V K I ++I I+
Sbjct: 382 SSSMEEMSSSINQNAENARQTGSIASKAAQDAKESGEAVHNTVAAMKEIAGKISIIEEIA 441
Query: 250 EQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESV 309
QT+LLALNAA+EAARAGE G+GFAVVA E+RKLAE S+ AA +I +L S
Sbjct: 442 RQTDLLALNAAVEAARAGEHGRGFAVVASEVRKLAERSQTAAAEINKL-------SSTST 494
Query: 310 EVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLE 369
V ++ +++ I+++ + ++A +E A ++ + Q + +++ E
Sbjct: 495 AVAERAGTLLEKLVPDIQKTADLVQEIAATSQEQNSGAGQVNLALQQLDQVVQQNASASE 554
Query: 370 NLAASAEETTAAAEEVSAAAE 390
LA++AEE +A AE++ AA +
Sbjct: 555 ELASTAEELSAQAEQLQAAMD 575
>pdb|1QU7|A Chain A, Four Helical-Bundle Structure Of The Cytoplasmic Domain Of
A Serine Chemotaxis Receptor >gi|9955272|pdb|1QU7|B
Chain B, Four Helical-Bundle Structure Of The
Cytoplasmic Domain Of A Serine Chemotaxis Receptor
Length = 227
Score = 132 bits (329), Expect = 7e-30
Identities = 78/219 (35%), Positives = 134/219 (60%), Gaps = 11/219 (5%)
Query: 180 KETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIE 239
++T ++ME+ A++++ A+ A++ A++ + ++++ + +T+R ++ + I
Sbjct: 10 EQTAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIA 69
Query: 240 NITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIK 299
+I +VI I+ QTN+LALNAA+EAARAGE G+GFAVVA E+R LA+ S +AA +I+ LI+
Sbjct: 70 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIE 129
Query: 300 QIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGE 359
+SV G+ +V+++ E + E VS +T+V ++M E+ + E + Q G
Sbjct: 130 -------DSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGL 182
Query: 360 KIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQE 398
+ E R + AA E++ AAA AA EEQ+S L E
Sbjct: 183 AVAEMDRVTQQNAALVEQSAAAA----AALEEQASRLTE 217
>dbj|BAB04284.1| (AP001509) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 401
Score = 132 bits (329), Expect = 7e-30
Identities = 97/364 (26%), Positives = 186/364 (50%), Gaps = 20/364 (5%)
Query: 74 EIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVM 133
EI + I G L + E A Q IE + + + +L KN N ++
Sbjct: 37 EITNGMKEIVAGKLVNKMDEKSSNHAVFNQLIEFVSRVREKFLLFSKNVHEKGENLAEIG 96
Query: 134 K---ENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFE 190
+ E + V ++ +V +N+ + + EN M + + I D+S+ + E
Sbjct: 97 EYATEKADIVRAAIDEVGRGLNKQLVATE---ENAMSMEEMTQAIEDLSQRSNEISELSN 153
Query: 191 ASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISE 250
++ L +EG EK + + ++++++++ + + + + E I I VI+ ISE
Sbjct: 154 TTL----DLTQEGSEKLKDSLEKMKQLNQTINTTYDAINKLGEKSHEIGMIVKVITGISE 209
Query: 251 QTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVE 310
Q NLLALNA+IEAARAGE GKGFAVVADE+RKLAE+S++++ ++ ++K I ++ G V
Sbjct: 210 QINLLALNASIEAARAGEHGKGFAVVADEVRKLAEQSRQSSSEVSNIVKNIQEETGIVVG 269
Query: 311 VTQQGAEVVK-TSTEVIKESVSY--LTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRF 367
Q+G E + T+T +++ + + + E +S E++ ++I +
Sbjct: 270 SMQKGTEEFEDTNTTIVEVGAMFEKILTATRTIAENNGNSSASTEELSAASQQI---MTT 326
Query: 368 LENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKLSKDHE 427
+E +A+ + E+ EE++ ++++ S L++L + K L L + +++ L+ D E
Sbjct: 327 IEEIASISRESVEMFEELTEISDDELSTLEKLVQEAKPL----LALKQDVNQLLLAWDRE 382
Query: 428 SQVK 431
+ +
Sbjct: 383 DETE 386
>gb|AAC18612.1| (AF016689) Mcp-2 [Treponema pallidum]
Length = 427
Score = 132 bits (328), Expect = 9e-30
Identities = 105/398 (26%), Positives = 192/398 (47%), Gaps = 51/398 (12%)
Query: 66 KQLQREIDEIVKILDRIA--QGDLSVEDKEIGGMGAKVR-QGIEDLRKSISQLVLNIKNA 122
+++ R + V++L+ IA +GDL+V +GG + Q + I + + ++
Sbjct: 40 RKIVRPLRSTVRVLEDIAYGEGDLTVRLPVVGGDEVSLLCQYFNQTMEKIRFAIATVGSS 99
Query: 123 AIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKET 182
+ D+R + N+ + A +V ++ I+ V + +S+ TDT+ I
Sbjct: 100 SDDMRRIGDELASNMTETASAVNEITANIDGVKHRVDLQVSGVSEATDTVERI------- 152
Query: 183 VSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVA---------- 232
+ T++ +S+ A + Q I I++ +E+ +E V +A
Sbjct: 153 IKTIKGLNSSIETQAVNVAQSSSSVEQMVANIVSITQTLERSDEAVHSLAIATADGRDTL 212
Query: 233 -----------EMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIR 281
E S+ ++VI I+ QTNLLA+NAAIEAA AGEAGKGFAVVADEIR
Sbjct: 213 VSSSGITQKISEESGSLLEASSVIQHIASQTNLLAMNAAIEAAHAGEAGKGFAVVADEIR 272
Query: 282 KLAEESKKAAEDIRELIKQIGDKI------GESVE--------VTQQGAEVVKTSTEVIK 327
KLAEES + I E +K + +I ++VE ++ Q + ++ TE +K
Sbjct: 273 KLAEESSTQGKTITETLKTLSVEIDTLSTSSKAVEEQFDTIFRLSDQVRTMSRSLTEAMK 332
Query: 328 ESVSYLTQVAEMMEEMEVKASELRE---KVIQEGEKIEEGLRFLENLAASAEETTAAAEE 384
E +V ++ + +++E +++ GE I ++ L++L + E + E
Sbjct: 333 EQSDGSREVLAAIKSINAATVDVKEGSADMLKGGEVIAREMQRLDDLTS---EIARSMNE 389
Query: 385 VSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKL 422
++A A E ++A+ E+ E + + + L +++ KFK+
Sbjct: 390 MAAGAIEINNAVHEVNEITQRSKQSISSLADEVEKFKV 427
>pir||H71317 probable methyl-accepting chemotaxis protein (mcp2-1) - syphilis
spirochete >gi|3322777|gb|AAC65475.1| (AE001225)
methyl-accepting chemotaxis protein (mcp2-1) [Treponema
pallidum]
Length = 845
Score = 132 bits (328), Expect = 9e-30
Identities = 105/398 (26%), Positives = 192/398 (47%), Gaps = 51/398 (12%)
Query: 66 KQLQREIDEIVKILDRIA--QGDLSVEDKEIGGMGAKVR-QGIEDLRKSISQLVLNIKNA 122
+++ R + V++L+ IA +GDL+V +GG + Q + I + + ++
Sbjct: 458 RKIVRPLRSTVRVLEDIAYGEGDLTVRLPVVGGDEVSLLCQYFNQTMEKIRFAIATVGSS 517
Query: 123 AIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKET 182
+ D+R + N+ + A +V ++ I+ V + +S+ TDT+ I
Sbjct: 518 SDDMRRIGDELASNMTETASAVNEITANIDGVKHRVDLQVSGVSEATDTVERI------- 570
Query: 183 VSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVA---------- 232
+ T++ +S+ A + Q I I++ +E+ +E V +A
Sbjct: 571 IKTIKGLNSSIETQAVNVAQSSSSVEQMVANIVSITQTLERSDEAVHSLAIATADGRDTL 630
Query: 233 -----------EMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIR 281
E S+ ++VI I+ QTNLLA+NAAIEAA AGEAGKGFAVVADEIR
Sbjct: 631 VSSSGITQKISEESGSLLEASSVIQHIASQTNLLAMNAAIEAAHAGEAGKGFAVVADEIR 690
Query: 282 KLAEESKKAAEDIRELIKQIGDKI------GESVE--------VTQQGAEVVKTSTEVIK 327
KLAEES + I E +K + +I ++VE ++ Q + ++ TE +K
Sbjct: 691 KLAEESSTQGKTITETLKTLSVEIDTLSTSSKAVEEQFDTIFRLSDQVRTMSRSLTEAMK 750
Query: 328 ESVSYLTQVAEMMEEMEVKASELRE---KVIQEGEKIEEGLRFLENLAASAEETTAAAEE 384
E +V ++ + +++E +++ GE I ++ L++L + E + E
Sbjct: 751 EQSDGSREVLAAIKSINAATVDVKEGSADMLKGGEVIAREMQRLDDLTS---EIARSMNE 807
Query: 385 VSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKL 422
++A A E ++A+ E+ E + + + L +++ KFK+
Sbjct: 808 MAAGAIEINNAVHEVNEITQRSKQSISSLADEVEKFKV 845
>pir||G82365 methyl-accepting chemotaxis protein VC0098 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9654496|gb|AAF93276.1| (AE004100) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 659
Score = 131 bits (327), Expect = 1e-29
Identities = 90/327 (27%), Positives = 153/327 (46%), Gaps = 43/327 (13%)
Query: 67 QLQREIDEIVKILDRIAQGDLSVE-----DKEIGGMGAKVRQGIEDLRK---SISQLVLN 118
Q + ++E+ +++ ++ GDLS + + E +G + Q I LR+ I+ +
Sbjct: 298 QRKMVVNEVKRVMTALSSGDLSAQLTHPFEGEFAELGEVISQFIVTLRQIITDINSVAAT 357
Query: 119 IKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDI 178
IK AA ++ N + EQ A +++Q
Sbjct: 358 IKLAATEISNGNTDLSSRTEQQASNLEQ-------------------------------- 385
Query: 179 SKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSI 238
T S+MEE +++R+ + A + +A + ++E++ T+ + E + I
Sbjct: 386 ---TASSMEELNSTVRQNSDNAMQANILAGKATEIAASGGELIEQVVVTMASINESAQKI 442
Query: 239 ENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELI 298
+I VI I+ QTN+LALNAA+EAARAGE G+GF+VVA E+R LA+ S AA+DI+ LI
Sbjct: 443 ADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFSVVASEVRSLAQRSANAAKDIKALI 502
Query: 299 KQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEG 358
KI E+ + +K IK + +A E +E+ + V Q
Sbjct: 503 SDSVSKISNGNELVDRSGSTMKDIVVSIKRVHDLMADIASASAEQATGINEVNQAVNQMD 562
Query: 359 EKIEEGLRFLENLAASAEETTAAAEEV 385
E ++ +E AA++E A AE++
Sbjct: 563 EMTQQNAALVEEAAAASESLLAQAEQL 589
>pir||F75590 methyl-accepting chemotaxis protein - Deinococcus radiodurans
(strain R1) >gi|6460726|gb|AAF12431.1|AE001863_56
(AE001863) methyl-accepting chemotaxis protein
[Deinococcus radiodurans]
Length = 758
Score = 131 bits (327), Expect = 1e-29
Identities = 94/374 (25%), Positives = 181/374 (48%), Gaps = 32/374 (8%)
Query: 53 TKVKVSADIEEYEK----QLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDL 108
T+++ SA+ E E+ +LQ I + + + IA+GDL+ + V I +
Sbjct: 407 TQLRASAERTEQERVEAQRLQNNIGQFLDVTMDIAEGDLTKRGVVTEDILGNVVDSINLM 466
Query: 109 RKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKM 168
++ + ++ A+ V +K M E + Q A EAQR E +S++
Sbjct: 467 TDELAATLQQVQAASASVSGGSKQMLGTTEAIQQGAQLTAA-------EAQRVAEQVSQI 519
Query: 169 TDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETV 228
T T+R + ++ + T RE +++G E ++ ++ I R ++++ + +
Sbjct: 520 TATIRQMAQNAQTSAQTA-------REALLASQQGQEALQETLGGMQNIRREVQQVSKRI 572
Query: 229 RGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESK 288
+ + + I+ I + IS I+ +TNLLALNA++EAA AG+AG F VADEIR+LA S
Sbjct: 573 KTLGDRSLEIQEIVDTISQIARRTNLLALNASVEAAGAGDAGGRFGAVADEIRQLATTSA 632
Query: 289 KAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKAS 348
+A I LIK + ++ + + ++G V+ + + L + E+ E +++
Sbjct: 633 QATTRIAGLIKSVQAEVQDVIVEAEEGTREVEQGYRIAGSAGQRLQDIGELTE----RSA 688
Query: 349 ELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDR 408
+L E + + S E AA ++++ A+ SA+Q+ R + ++L+
Sbjct: 689 QLAESIAAS----------TQEQVQSVERVNAAVQQIAEVAQRSESAVQQGRSTAQQLED 738
Query: 409 LVDVLMEQISKFKL 422
L L +++F+L
Sbjct: 739 LARQLDTSLARFRL 752
>pir||B82203 methyl-accepting chemotaxis protein VC1405 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655901|gb|AAF94562.1| (AE004219) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 595
Score = 131 bits (327), Expect = 1e-29
Identities = 100/351 (28%), Positives = 171/351 (48%), Gaps = 28/351 (7%)
Query: 64 YEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAA 123
+ KQ+ I K+ + +A+G+ S AKV G E I QL+ ++ A
Sbjct: 263 FSKQIVMAIARARKLANEMAEGNFSKR--------AKVTTGDE-----IGQLITSMNTMA 309
Query: 124 IDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETV 183
+ + + + +A +V Q+A + Q++Q N ++T M + E
Sbjct: 310 QSLSHIVGEVIDRANTIASTVTQLASSAESNKKSVQQQQANTEQVTSAMAQMAITITEVA 369
Query: 184 STMEEFEASMREMAQLAKEGGEKGRQAADQIEEIS-RMMEKIEETVRGVAEMGKS---IE 239
S+ EE A+ A+E + E +S +++ +++ + + E+ S IE
Sbjct: 370 SSAEESSAATAR----AQENARYSCDVLGKTETVSSQLVANAQQSQQMIVELEASTRQIE 425
Query: 240 NITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIK 299
+ V+ ISEQTNLLALNAAIEAARAGE G+GFAVVADE+R LA S++A +I+ LI+
Sbjct: 426 SFVLVVEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRSQQATHEIKGLIQ 485
Query: 300 QIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGE 359
+ VE Q +++ +S I+ES S +T + ++ + + EL Q
Sbjct: 486 TL-------VERAQSATKMIDSSDRQIEESFSSITAAKKQLDSINLALLELTSANTQVAA 538
Query: 360 KIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLV 410
EE + ++ + + A E + +A+E + A +EL + + L L+
Sbjct: 539 ASEEQSVAADEISHNMTDIRDAGETIMLSAQETAQASEELAQQAQGLKLLM 589
>pir||H82503 methyl-accepting chemotaxis protein VCA0068 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657452|gb|AAF95982.1| (AE004350) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 547
Score = 131 bits (327), Expect = 1e-29
Identities = 100/353 (28%), Positives = 174/353 (48%), Gaps = 49/353 (13%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVEDKEIGG-----MGAKVRQGIEDLRKSISQLV---L 117
+QLQ+ + EI K G+L V+ +E G + V + LR+++ LV
Sbjct: 225 RQLQQTVREIAK-------GNLLVKAQEEGNNEITLLARDVNATVTQLRQTVESLVRIST 277
Query: 118 NIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHD 177
++ +A+ ++ N +Q V+QVA A+NQ+ AQ ++ + +
Sbjct: 278 DVASASTELATVMTQASVNSDQEKQEVEQVASAVNQLQSTAQSVTDHAHSADGAAQQANQ 337
Query: 178 ISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKS 237
++ +++ EE + +MA DQ+ E ++++ +++E +
Sbjct: 338 LASQSLRMFEESHRATAKMA--------------DQLREAAQVVNQLKE-------QSER 376
Query: 238 IENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIREL 297
I N+T VI SISEQTNLLALNAAIEAARAGE+G+GFAVVADE+R LA ++ + ++I+ +
Sbjct: 377 IGNVTEVIRSISEQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQTSTQEIQAI 436
Query: 298 IKQIGDKIGES----------VEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKA 347
I+++ ++ + +E Q A V S I S+S L Q+ + +
Sbjct: 437 IEELQNQSNTANSSMHSSLSLLEQNQSLAAKVSASLTEINHSISALGQINAQVATASEEQ 496
Query: 348 SELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELR 400
S++ + + + I E + ++ AA+ E+S AE+Q LQ R
Sbjct: 497 SQVTKDINRNLSNIYE---LVSQNVTGITQSAAASHELSDLAEQQHQQLQYFR 546
>pir||E83067 probable chemotaxis transducer PA4633 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950886|gb|AAG08021.1|AE004877_8 (AE004877) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 712
Score = 131 bits (327), Expect = 1e-29
Identities = 96/328 (29%), Positives = 160/328 (48%), Gaps = 15/328 (4%)
Query: 92 KEIGGMGAKVRQGIEDL-RKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEA 150
+++ GM + QG DL R+ S+ + + A ++ I QV SVQ+V+++
Sbjct: 388 RQLVGMLDDIAQGEGDLTRRLSSERADELGSIAKGFNTFLGKLQNMIGQVVQSVQKVSDS 447
Query: 151 INQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQA 210
+ A R + + + + + E +T ++ + A+ A + Q
Sbjct: 448 SEHTADIAIRTNQGVQQQLAEIELVATAVHEMTATAQDVARNATHAAEAANHADQAAHQG 507
Query: 211 ADQIEE----ISRMMEKIEETVRGVAEMGKSIENITNV---ISSISEQTNLLALNAAIEA 263
+E I + +I V V + K ENI + I I+EQTNLLALNAAIEA
Sbjct: 508 KQIVESSSAAIQALASEIGRAVGVVQNLAKDSENINAILVAIRGIAEQTNLLALNAAIEA 567
Query: 264 ARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTST 323
ARAGE G+GFAVVADE+R LA+++++A E+I+ +I+Q+ + T+ +V++ S
Sbjct: 568 ARAGEQGRGFAVVADEVRNLAQKTQQATEEIQSMIQQL-------QQGTRDVVKVMQDSQ 620
Query: 324 EVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAE 383
E +SV + Q AE +E + S + + Q EE E++ + A
Sbjct: 621 ERTDDSVRHARQAAEALESITQAVSVINDMNTQIASAAEEQSAVAEDINRNVANIGQVAN 680
Query: 384 EVSAAAEEQSSALQELRESVKELDRLVD 411
+V+ A+E S A EL ++ RLV+
Sbjct: 681 QVAGGADEASQASAELTRLAEQQRRLVN 708
>pir||C83012 probable chemotaxis transducer PA5072 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951365|gb|AAG08457.1|AE004920_7 (AE004920) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 647
Score = 131 bits (327), Expect = 1e-29
Identities = 90/357 (25%), Positives = 181/357 (50%), Gaps = 23/357 (6%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAID 125
+Q+ R +DE + + IA GDL + + + R + L++ + ++ +++
Sbjct: 314 RQIVRPLDEALAQAEAIAAGDLGKRPQN--PLTLQRRDELGQLQRVMQRMGDSLRELVGR 371
Query: 126 VRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVST 185
+ + + + E+++ +Q +N +E + + +M T + D+++
Sbjct: 372 ISDGVSQLASSAEELSAVTEQTRAGVNSQKVETDQVATAMHEMAAT---VQDVARNA--- 425
Query: 186 MEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVI 245
E + R+ + A++G QA +IE ++ M+ E + + + I ++ +VI
Sbjct: 426 -ELASQAARQADEEARQGDAVVDQAVTRIERLASEMDVSSEAMARLKNESEQIGSVLDVI 484
Query: 246 SSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKI 305
S++EQTNLLALNAAIEAARAG+AG+GFAVVADE+R LA+ ++++ +I LI+++
Sbjct: 485 KSVAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRGLAQRTQQSTAEIEGLIQRLQQGA 544
Query: 306 GESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGL 365
GE+ E + + ++ E+ + + + L + + +++ ++ Q+ EE
Sbjct: 545 GEAAERLENSRSLTASTVELARRAGAALDSITRTVSDIQNMNLQIATAAEQQSTVAEEIN 604
Query: 366 RFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKL 422
R + ++ AE++ AA+E+ +A S EL RL L Q+ +F+L
Sbjct: 605 RSVLSVRDVAEQSAAASEQTAA--------------SSGELARLGTQLQAQVGRFRL 647
>sp|P33955|HTR1_HALSA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (METHYL-ACCEPTING PHOTOTAXIS
PROTEIN I) (MPP-I) >gi|280349|pir||S28466 transducer
rhodopsin - Halobacterium salinarium
>gi|2648028|emb|CAA48578.1| (X68591) halobacterial
transducer rhodopsin (Htr) [Halobacterium salinarum]
Length = 536
Score = 131 bits (326), Expect = 1e-29
Identities = 74/343 (21%), Positives = 175/343 (50%), Gaps = 7/343 (2%)
Query: 86 DLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQ 145
D+ + + + G Q ++DL+ ++ + A ++ T+ M E + S
Sbjct: 175 DVDTDPEAMETFGTAFNQMMDDLQATVR----TVTTVADEIEAKTERMSETSADIEASAG 230
Query: 146 QVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGE 205
EA++++ + ++ + D ++ + ++E +T+++ + ++A + +
Sbjct: 231 DTVEAVSKIESQPNDQRTELDSAADDVQQVSASAEEIAATIDDLASRSEDVATASDAARD 290
Query: 206 KGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAAR 265
+ A D++ I ++ V + + I +I +VI+ I EQTN+LALNA+IEAAR
Sbjct: 291 SSKSALDEMSSIETEVDDPVGQVEHLRDQVAEITDIVDVITDIGEQTNMLALNASIEAAR 350
Query: 266 AG--EAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTST 323
AG G GF+VVADE++ LAEE++ A +I +++++ + + Q V++ +
Sbjct: 351 AGGNADGDGFSVVADEVKDLAEETQDRANEIAAVVEKVTAQTEDVTASIQHTRTRVESGS 410
Query: 324 EVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAE 383
E ++ ++ ++ +A+ + E+ E++ ++ E ++ +E +A +++TTA A
Sbjct: 411 ETVESTLLHIRTIADSISEVSNSIDEIQRTTSEQAETVQSTATSVERVAGLSDDTTALAS 470
Query: 384 EVSAAAEEQSSALQELRESVKEL-DRLVDVLMEQISKFKLSKD 425
+ + Q + +E+ S+++ + V+ L +++ F ++ +
Sbjct: 471 DAESPVIGQRESAEEIAASLEQFQNTAVEQLQSRVASFTVATE 513
>pir||T44973 transducer protein htpIII [similarity] - Halobacterium salinarum
>gi|1654419|gb|AAB17880.1| (U75435) transducer HtA
protein [Halobacterium salinarum]
Length = 482
Score = 131 bits (326), Expect = 1e-29
Identities = 92/372 (24%), Positives = 179/372 (47%), Gaps = 18/372 (4%)
Query: 43 IASYINYKGETK-----VKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGM 97
IA+ + + GE + V+ + Y+ +LQ E+V LD + G
Sbjct: 118 IATPVYHTGEFRGVIEIVQDRSSSARYQSELQALFGELVDTLDAY----------DAGRF 167
Query: 98 GAKVRQGIED--LRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVS 155
A V ED L Q+ N+ + H + ++E++ + Q V+E+ ++
Sbjct: 168 DATVDIAAEDTLLDDEYIQIGRNLTEFGDTLAAHITEVHNDVERLEAASQAVSESSAEID 227
Query: 156 IEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIE 215
+ + N+S + + + +E ST +E + +LA +G AAD +
Sbjct: 228 ELSTAQSTNVSTVATEVETLSATVQEIASTADEVVDTSATAERLADDGSAAASDAADMMA 287
Query: 216 EISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAV 275
+++ + + V + + I+ + +VI+ I+EQTN+LALNA+IEAA GE G+GFAV
Sbjct: 288 DVATAADSVTSDVEALQNRIEDIDEVVDVITGIAEQTNMLALNASIEAAPPGEEGEGFAV 347
Query: 276 VADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQ 335
VA+E++ LAE+++ A I L+ +I ++V + ++ + ++++++ +
Sbjct: 348 VAEEVKALAEDAQSNAGHIESLVSEIQRDTADTVTDLVTTTDRIEDAVAQVEDAMASFEE 407
Query: 336 VAEMMEEMEVKASEL-REKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSS 394
+ +E +AS + + ++ EE ++ A A++ T A ++ + E QS+
Sbjct: 408 IVTAVEATAERASNMVSDATNEQAASAEEIAAMVDETADLADDITTAVADIVSQTEAQSA 467
Query: 395 ALQELRESVKEL 406
L +L ESV EL
Sbjct: 468 MLHDLDESVSEL 479
>gb|AAB69316.1| (AF012922) methyl-accepting chemotaxis protein [Treponema
denticola]
Length = 729
Score = 131 bits (326), Expect = 1e-29
Identities = 102/392 (26%), Positives = 195/392 (49%), Gaps = 45/392 (11%)
Query: 68 LQREIDEIVKILDRIAQGDLS-----VEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNA 122
L+R + + +IA GDL+ ++ E+G + + IE+ I L K+
Sbjct: 346 LKRYFKRLEIVFGKIASGDLTDRLAVKKNNEVGRIMMNLNTAIENNHTMICLL----KDE 401
Query: 123 AIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKET 182
A + + + ++E+ A +++Q+ E + V +A + +++ T+ I+
Sbjct: 402 ADKMNSIGSQLSSSMEETAAAIKQIGENVKGVKEKAMSQAAGVTETVATVEQINGRLSRL 461
Query: 183 VSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKI--------------EETV 228
VS++E S+ E + + E + A +++ + +++ + E V
Sbjct: 462 VSSIEMQTESINESSVVITRMAENTVKIAKTLDQNNELIKTVYGQTKVGKDGARTANEIV 521
Query: 229 RGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESK 288
+ +AE S+ + +I +I+ QTNLLA+NAAIEAA AGE+GKGFAVVADEIRKLAE S
Sbjct: 522 KQIAEKSASLLEASQIIQNIASQTNLLAMNAAIEAAHAGESGKGFAVVADEIRKLAEGSN 581
Query: 289 KAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQ----VAEMMEEME 344
+ I +IK+ + I ++T+ G+ KT +V VS +++ + E+M E E
Sbjct: 582 LQGKQIAAVIKETTEIIH---DITEAGSRAEKTFIDVY-NLVSQISEKEDSILEVMREQE 637
Query: 345 VKASELREKVIQ-----------EGEKIEEGLRF---LENLAASAEETTAAAEEVSAAAE 390
+ + + + E +E G + ++ LA ETT + E+++ A+
Sbjct: 638 ENGKHVLDAIKRINDVTSEIDSASAEMLEGGNQIGQEMQKLAEITLETTDSMNEIASGAD 697
Query: 391 EQSSALQELRESVKELDRLVDVLMEQISKFKL 422
+ + A++E+ + ++ ++ L ++SKFK+
Sbjct: 698 QITIAVKEVSDITQKNKASIENLSNEVSKFKV 729
>pir||QREBDT aspartate chemoreceptor protein - Salmonella typhimurium
Length = 552
Score = 131 bits (325), Expect = 2e-29
Identities = 87/292 (29%), Positives = 162/292 (54%), Gaps = 18/292 (6%)
Query: 107 DLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENIS 166
DL K+ L ++ +N ++ + M+ ++ V++ ++AI + E ++S
Sbjct: 234 DLAKT---LTVSGRNGIGELAGTVEHMQRSLIDTVTQVREGSDAIYSGTSEIAAGNTDLS 290
Query: 167 KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEE 226
T+ +ET ++ME+ A++++ A A++ + + A++ ++++ +
Sbjct: 291 SRTEQQA---SALEETAASMEQLTATVKQNADNARQASQLAQSASETARHGGKVVDGVVN 347
Query: 227 TVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEE 286
T+ +A+ K I +I +VI I+ QTN+LALNAA+EAARAGE G+GFAVVA E+R LA
Sbjct: 348 TMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASR 407
Query: 287 SKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVK 346
S +AA++I+ LI+ +SV G+ +V+++ E + + V+ +T+VA++M E+
Sbjct: 408 SAQAAKEIKALIE-------DSVSRVDTGSVLVESAGETMTDIVNAVTRVADIMGEIASA 460
Query: 347 ASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQE 398
+ E + Q + E R + A+ +E+ AA AA EEQ+S L +
Sbjct: 461 SDEQSRGIDQVALAVSEMDRVTQQNASLVQESAAA-----AALEEQASRLTQ 507
>pir||H82379 methyl-accepting chemotaxis protein VCA1092 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658538|gb|AAF96984.1| (AE004434) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 678
Score = 131 bits (325), Expect = 2e-29
Identities = 94/349 (26%), Positives = 173/349 (48%), Gaps = 48/349 (13%)
Query: 68 LQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVR 127
L + + + ++ R+A+GDL+ E + + +L + + +++R
Sbjct: 328 LVEPLGQCITVMSRVAEGDLNTSMSE-------------EYQGEFGRLASAVNASIVNLR 374
Query: 128 NHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTME 187
N + + +VA + ++A+ N +S + + N+ +ET ++ME
Sbjct: 375 NMVDKITVSSARVATASTEIADGNNDLSQRVEAQASNL--------------EETAASME 420
Query: 188 EFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISS 247
E A++R+ A AK+ AA + ++ + + + K I +I +VI
Sbjct: 421 EITATVRQNADNAKDANLLATDAAKKAARGGEVVGEAISAMGAINTASKKIADIISVIDE 480
Query: 248 ISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGE 307
I+ QTNLLALNAA+EAARAGE G+GFAVVA E+R LA+ S AA++I+ LI DK+ E
Sbjct: 481 IAFQTNLLALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAGAAKEIKGLINDSVDKVNE 540
Query: 308 SVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRF 367
G+ +V S +KE V + +V++++ ++ AS + + G+
Sbjct: 541 -------GSRLVNESGSTLKEIVEAVVRVSDLI--AQIAASSVEQST---------GIDE 582
Query: 368 LENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQ 416
+ A+ +E T ++ ++ EE S+A Q L++ KEL L++ + +
Sbjct: 583 INRAIAAMDEMT---QQNASLVEETSAASQSLKDEGKELLNLMNFFVTE 628
>pir||A29053 aspartate chemoreceptor protein - Salmonella typhimurium
Length = 552
Score = 130 bits (324), Expect = 3e-29
Identities = 87/292 (29%), Positives = 162/292 (54%), Gaps = 18/292 (6%)
Query: 107 DLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENIS 166
DL K+ L ++ +N ++ + M+ ++ V++ ++AI + E ++S
Sbjct: 234 DLAKT---LTVSGRNEIGELAGTVEHMQRSLIDTVTQVREGSDAIYSGTSEIAAGNTDLS 290
Query: 167 KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEE 226
T+ +ET ++ME+ A++++ A A++ + + A++ ++++ +
Sbjct: 291 SRTEQQA---SALEETAASMEQLTATVKQNADNARQASQLAQSASETARHGGKVVDGVVN 347
Query: 227 TVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEE 286
T+ +A+ K I +I +VI I+ QTN+LALNAA+EAARAGE G+GFAVVA E+R LA
Sbjct: 348 TMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASR 407
Query: 287 SKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVK 346
S +AA++I+ LI+ +SV G+ +V+++ E + + V+ +T+VA++M E+
Sbjct: 408 SAQAAKEIKALIE-------DSVSRVDTGSVLVESAGETMTDIVNAVTRVADIMGEIASA 460
Query: 347 ASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQE 398
+ E + Q + E R + A+ +E+ AA AA EEQ+S L +
Sbjct: 461 SDEQSRGIDQVALAVSEMDRVTQQNASLVQESAAA-----AALEEQASRLTQ 507
>pir||S75285 methyl-accepting chemotaxis protein homolog sll1294 - Synechocystis
sp. (strain PCC 6803) >gi|1652276|dbj|BAA17199.1|
(D90904) methyl-accepting chemotaxis protein (MCP)
[Synechocystis sp.]
Length = 953
Score = 130 bits (324), Expect = 3e-29
Identities = 99/399 (24%), Positives = 193/399 (47%), Gaps = 41/399 (10%)
Query: 50 KGETKVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLR 109
+GET V+ + ++ QL + + + ++ + L E K RQ E+L+
Sbjct: 569 EGETGVRAEVESKDEVGQLAVTFNAMAEQVEASTRS-LQETSLERQQEAEKQRQLKEELQ 627
Query: 110 KSISQLVLNIKNAAI-DVRNHTKVMKENIEQVADS-----------VQQVAEAINQVSIE 157
+ +L+ +I+ ++ D+ + V + +AD+ V+QV + +VS +
Sbjct: 628 DGVVRLLTDIEESSRGDLTVRSSVEAGAVGAIADAFNATLAGLRKLVKQVVDTATEVSGQ 687
Query: 158 AQREQENISKMTDT-------MRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQA 210
AQ + + I+ ++D + + E ++E S + A +AK+G E +Q
Sbjct: 688 AQEDSQEITSLSDNALEQARALEFATASVAEMAQSIESVAISAQTAAAIAKQGNEAAQQG 747
Query: 211 ADQIEEISRMMEKIEETV-------RGVAEMGKSIENITNVISSISEQTNLLALNAAIEA 263
+ ++E + K+ V + +AE I I +IS ISE+TNLLA NA+IEA
Sbjct: 748 QNTMDETVESIYKVRGRVAEISKKSKRLAESSLEISKIVGIISGISEKTNLLAFNASIEA 807
Query: 264 ARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTST 323
ARAGE G+GF +VADE+R+LAE +A++I ++I I ++ + ++ ++ V T T
Sbjct: 808 ARAGENGQGFRIVADEVRRLAEMVTLSAQEIEQVILSIQEETSQMSQLMEESTNEVVTGT 867
Query: 324 EVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAE 383
++++++ L +A++ EE++ + R E+ +++ T +
Sbjct: 868 QLVQKTKETLQNLAQISEEIDTVLDSIS--------------RNTESQRLASQMVTETVQ 913
Query: 384 EVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKL 422
V++ A+ S Q + +S++ L + L KFK+
Sbjct: 914 NVASVAKATSDKSQLVSQSLQSLAKTAVDLQTAAGKFKV 952
>gi|10955066 mclA [Agrobacterium tumefaciens] >gi|8572698|gb|AAF77144.1|
(AF242881) mclA [Agrobacterium tumefaciens]
Length = 739
Score = 130 bits (324), Expect = 3e-29
Identities = 98/346 (28%), Positives = 175/346 (50%), Gaps = 42/346 (12%)
Query: 59 ADIEEYEKQLQREIDEIVKILDRIAQGDLS--VEDKEIGGMGAKVRQGIEDLRKSISQLV 116
A+ E ++Q++ ++E+ L R+A+GD+S ++ IG + E LR+ ++ +
Sbjct: 419 AEKHELDRQIEFAVNELAGGLGRMARGDISSTIDTPFIGRL--------EQLREDFNRSM 470
Query: 117 LNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIH 176
L ++ D+RN+ ++++ N ++A S +A+ Q + +
Sbjct: 471 LRLQATMRDIRNNVEMIQSNGSEMAQSAGDLAKRTEQQAASLE----------------- 513
Query: 177 DISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGK 236
ET + +++ ++R A+ AK+ RQA +E + ++ + + + + +
Sbjct: 514 ----ETAAAVDQITVTVRSSAERAKDVALIVRQAKVSADESAVVVTNATDAMSRIEDASR 569
Query: 237 SIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRE 296
IE I VI I+ QTNLLALNA IEAARAGE+GKGFAVVA E+R+LA+ S AA +I+
Sbjct: 570 HIEQIIGVIDEIAFQTNLLALNAGIEAARAGESGKGFAVVAMEVRELAQRSAAAAGEIKG 629
Query: 297 LI-KQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVI 355
LI K + S+ V + G + S++++ V EM +AS + +
Sbjct: 630 LINKSTSEVTTGSLLVQEAGKALANISSQIV---------VISQHVEMIARASHDQSSAL 680
Query: 356 QE-GEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELR 400
QE I + + AA EETTAA+ ++A A+ ++ + +
Sbjct: 681 QEVNSTITQIDQMTHQNAAMVEETTAASMALAAEADTLTTLISHFQ 726
>pir||A83624 probable chemotaxis transducer PA0176 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946009|gb|AAG03566.1|AE004455_7 (AE004455) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 679
Score = 129 bits (322), Expect = 4e-29
Identities = 81/323 (25%), Positives = 160/323 (49%), Gaps = 29/323 (8%)
Query: 55 VKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVE-DKEIGGMGAKVRQGIEDLRKSIS 113
++++ D+ R + ++ ++L +AQGDL+ + + G +++ D +S+S
Sbjct: 322 LRLAKDLNSLVDTADRGLRDVSRMLGALAQGDLTQRIEADYQGTFGQLKDFSNDTAQSLS 381
Query: 114 QLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMR 173
+++ I+ AA + + + ++A ++S +++ ++
Sbjct: 382 RMLGQIREAA--------------DTINTAASEIASGNAELSARTEQQASSL-------- 419
Query: 174 YIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAE 233
+ET S+MEE ++++ A+ A++ A++ + +++K+ T+ + E
Sbjct: 420 ------EETASSMEELTSTVKLNAENARQANSLAANASEVATQGGTVVQKVVSTMSSINE 473
Query: 234 MGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAED 293
+ I +I VI I+ QTN+LALNAA+EAARAGE G+GFAVVA E+R LA+ S AA++
Sbjct: 474 SARKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAAAAKE 533
Query: 294 IRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREK 353
I+ LI DK+ + Q + + I+ ++++A E E+
Sbjct: 534 IKTLISDSVDKVENGNTLVAQAGQTMSDIVVAIRRVTDIMSEIAAASAEQSTGIEEVNSA 593
Query: 354 VIQEGEKIEEGLRFLENLAASAE 376
V Q + ++ +E AA+AE
Sbjct: 594 VSQMDDMTQQNAALVEEAAAAAE 616
>gb|AAG34153.1|AF312875_1 (AF312875) methyl-accepting chemotaxis protein McpT [Sinorhizobium
meliloti]
Length = 652
Score = 129 bits (322), Expect = 4e-29
Identities = 96/351 (27%), Positives = 171/351 (48%), Gaps = 38/351 (10%)
Query: 48 NYKGETKVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDK-EIGGMGAKVRQGIE 106
+Y + + +A + E + I E +++ +A GDL+ K + G A+++ +
Sbjct: 285 DYDNDDLNRFAASVNELVNSVDTGIAETRRVIASLATGDLTQSMKGQFQGAFAELQTNVN 344
Query: 107 DLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENIS 166
D +++ K ++E V+ ++IN S E + +++S
Sbjct: 345 DTLQTLQ-----------------KTLRE--------VRMTTDSINGNSTELRSAADDLS 379
Query: 167 KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEE 226
K T+ + ET + ++E A++R + A+E +A D E + ++ +
Sbjct: 380 KRTEQQAAALE---ETSAALDEITAAVRNSTERAQEATVMVTEAKDSAAESASVVRNAID 436
Query: 227 TVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEE 286
+ + + I ITNVI I+ QTNLLALNA +EAARAG+AGKGFAVVA E+R+LA+
Sbjct: 437 AMGRIEQASSEIGQITNVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEVRELAQR 496
Query: 287 SKKAAEDIRELIKQIGDKIGESVEVTQ-QGAEVVKTSTEVIKESVSYLTQVAEMMEEMEV 345
+ AA+DI+ LI + G ++ V++ Q GA + + T V+K + ++ +A E
Sbjct: 497 AASAAKDIKSLISKSGGEVATGVKLVQATGAALGQIETRVLKIN-DHIHSIATAAREQST 555
Query: 346 KASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSAL 396
E+ V Q + + AA EE AA ++SA A+ ++ +
Sbjct: 556 GLGEVSTAVNQMDQVTQRN-------AAMVEEANAATHKLSAEADNLANLI 599
>sp|P21823|MCPD_ENTAE METHYL-ACCEPTING CHEMOTAXIS ASPARTATE TRANSDUCER
>gi|95557|pir||D32302 probable aspartate transducer tas
- Enterobacter aerogenes >gi|148350|gb|AAA24798.1|
(M26411) tas [Enterobacter aerogenes]
Length = 512
Score = 129 bits (321), Expect = 6e-29
Identities = 93/319 (29%), Positives = 162/319 (50%), Gaps = 40/319 (12%)
Query: 80 DRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQ 139
+RIA GDLS + G R ISQL +++ + +++ E
Sbjct: 224 ERIASGDLSAPIEVYG-------------RNEISQLFASLQRMQQSLIGTVGAVRDGAES 270
Query: 140 VADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQL 199
+ +Q++AE N +S +++ ++ +ET ++ME+ A++++ A
Sbjct: 271 ILIGLQEIAEGNNDLSSRTEQQDRSL--------------EETAASMEQLTATVKQNADN 316
Query: 200 AKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNA 259
A++ + R A+ + + + + + T+ +A + I IT+VI I+ QTN+LALNA
Sbjct: 317 ARQASQLARDASSTAAKRT-LADDVVTTMHDIANSSQKIGAITSVIDGIAFQTNILALNA 375
Query: 260 AIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVV 319
A+EAARAGE G+GFAVVA E+R LA S +AA++I+ L I ESV + G+ +V
Sbjct: 376 AVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKLL-------IDESVSRVKHGSVLV 428
Query: 320 KTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETT 379
+ S +++ V +T+V ++M E+ + E + Q + + +N A E +
Sbjct: 429 ENSGATMQDIVRSVTRVTDIMGEIASASDEQSRGIEQVTQALPRYQVTQQNAALVVESAS 488
Query: 380 AAAEEVSAAAEEQSSALQE 398
AA AA EEQ+ L +
Sbjct: 489 AA-----AALEEQAITLAD 502
>pir||F82342 methyl-accepting chemotaxis protein VC0282 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9654693|gb|AAF93457.1| (AE004116) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 556
Score = 129 bits (320), Expect = 7e-29
Identities = 90/341 (26%), Positives = 167/341 (48%), Gaps = 17/341 (4%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAID 125
+ + + +E + L IAQG+ G + ++ +D I+Q N
Sbjct: 225 RSITQPCEETLATLKNIAQGE--------GDLTRQLTVTGKDELAQIAQAFNLFTNKIRH 276
Query: 126 VRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVST 185
+ + E++ AD + QVA++ S +A + + + + M +H ++E +
Sbjct: 277 IIQEITPITESVTGSADELTQVAQS---ASSKAYDQHQAVDTVASAMNQLHASNQEVAQS 333
Query: 186 MEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVI 245
+ E + Q A +G E + Q++ + + + E+ + +A +S+ + VI
Sbjct: 334 AHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVI 393
Query: 246 SSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDK- 304
++EQTNLLALNAAIEAARAGE G+GFAVVADE+R LA ++ + +I ++I Q+ K
Sbjct: 394 RGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKA 453
Query: 305 --IGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIE 362
+ +S+ TQQ + V + E ++ L ++ ++ + + Q+ E +
Sbjct: 454 QSVSQSMTQTQQQSRVTQQQAE---QAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATD 510
Query: 363 EGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESV 403
E R L +A + + +A A +V+AA+E+ Q L S+
Sbjct: 511 EITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSL 551
>gb|AAG19989.1| (AE005080) Htr2 transducer; Htr2 [Halobacterium sp. NRC-1]
Length = 764
Score = 127 bits (317), Expect = 2e-28
Identities = 83/372 (22%), Positives = 175/372 (46%), Gaps = 2/372 (0%)
Query: 60 DIEEYEKQLQREIDEIVKILDRIAQGDLS--VEDKEIGGMGAKVRQGIEDLRKSISQLVL 117
D +E + L+ + + L +A GDL+ V+ A++ + D+ I V
Sbjct: 391 DAQETARALESAAADYEEALTAVADGDLTRRVDASRDHDAMARIGHALNDMLDDIETSVA 450
Query: 118 NIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHD 177
+ V + + ++ + D+ V+ A++++S A + + + ++ + +
Sbjct: 451 AATAFSDHVSDAAQRVEADAGDAIDAGTDVSTAVDEISDGATEQTDRLHEVAGEVDDLSA 510
Query: 178 ISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKS 237
++E T+ + + A +G + A + +++++ E + + +
Sbjct: 511 SAEEVAETVASLADTAGQAASAVDDGRQATEDAVETMDDVADDAEAAADAMDALDSEMAD 570
Query: 238 IENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIREL 297
I I +VI+ I++QTN+LALNA+IEAAR G G GFAVVADE++ LAEES+ AAEDI
Sbjct: 571 IGEIVDVIADIADQTNMLALNASIEAARTGADGDGFAVVADEVKTLAEESRDAAEDIESR 630
Query: 298 IKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQE 357
+ + ++ + + + ++ V + ++ + L V + + + A E+R ++
Sbjct: 631 LLALQGQVSDVADEMRATSDTVSDGRATVGDAATALDDVVSFVADTDTAAGEIRAATDRQ 690
Query: 358 GEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQI 417
++ +A ++ET A A V+ +A Q+ L + ++ +L L + +
Sbjct: 691 AHAASRVASAVDEVAGISQETAAQATAVADSAATQTDTLSSVDDAAADLADRAAALDDLL 750
Query: 418 SKFKLSKDHESQ 429
++F D E +
Sbjct: 751 AEFDAHDDTEPE 762
>pir||E82314 methyl-accepting chemotaxis protein VC0514 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9654941|gb|AAF93684.1| (AE004137) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 626
Score = 127 bits (316), Expect = 2e-28
Identities = 99/384 (25%), Positives = 185/384 (47%), Gaps = 40/384 (10%)
Query: 26 VFNSIPGAIVGGIVGVGIASYINYKGETKVKVSADIEEYEKQLQREID-EIVKILDRIAQ 84
+F S G + GG++ V I + +T DI L +++D + K +A
Sbjct: 276 IFYSAIGLVFGGLILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELAL 335
Query: 85 GDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSV 144
G S + +G+++RQ + + + + A N +V + +EQ +
Sbjct: 336 GFNSFTEM----LGSQIRQ--------LKTIASGVLDGAEKTANEAEVSRLVVEQQLQEL 383
Query: 145 QQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGG 204
+Q+A A+N++++ A S++ ++ + D +KE S + EG
Sbjct: 384 EQLATAMNEMAMTA-------SEVANSAQVAADAAKEGESA--------------SLEGS 422
Query: 205 EKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAA 264
+ D I+ +S + E V+ + + IE + +VI+ I++QTNLLALNAAIEAA
Sbjct: 423 SVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALNAAIEAA 482
Query: 265 RAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGD---KIGESVEVTQQGAEVVKT 321
RAGE+G+GFAVVADE+R LA+ ++++ I E+I+Q+ + + S++ ++ ++V
Sbjct: 483 RAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVVE 542
Query: 322 STEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAA 381
T + E +S + Q + +M ++ + E+ E+I +++L+ E A
Sbjct: 543 KTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLSIKLSE---A 599
Query: 382 AEEVSAAAEEQSSALQELRESVKE 405
A Q S ++E E + E
Sbjct: 600 ASNAGTEMNAQVSKVKEQNELLNE 623
>pir||E75590 methyl-accepting chemotaxis-related protein - Deinococcus
radiodurans (strain R1)
>gi|6460727|gb|AAF12432.1|AE001863_57 (AE001863)
methyl-accepting chemotaxis-related protein [Deinococcus
radiodurans]
Length = 756
Score = 127 bits (315), Expect = 3e-28
Identities = 93/386 (24%), Positives = 185/386 (47%), Gaps = 32/386 (8%)
Query: 41 VGIASYINYKGETKVKVSADIEEYEK----QLQREIDEIVKILDRIAQGDLSVEDKEIGG 96
+G+ + + +++ +A+ E E+ +LQ I + + + IA+GDL+
Sbjct: 397 LGVLTSSFNEAAAQLRTNAERVEQERLESQRLQDHIGQFLDVTMDIAEGDLTKRGVVTED 456
Query: 97 MGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSI 156
+ V I + ++ + ++ A+ V +K M E + Q A
Sbjct: 457 ILGNVVDSINLMTDELATTLQQVQAASASVSGGSKQMLGTTEAIQQGAQLTAA------- 509
Query: 157 EAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEE 216
EAQR E +S++T +R + ++ + T RE +++G E ++ ++
Sbjct: 510 EAQRVAEQVSQITAGIRQMAHNAQTSAQTA-------REALLASQQGQEALQETLGGMQN 562
Query: 217 ISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVV 276
I R ++++ + ++ + + I+ I + IS I+EQT+LLA+NA+IEAA AGEAG F +V
Sbjct: 563 IRREVQQVSKRIKTLGDRSLEIQEIVDTISQIAEQTHLLAVNASIEAAGAGEAGGRFGIV 622
Query: 277 ADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQV 336
AD +RKLA S +A I LIK + ++ + + ++G V+ + + L +
Sbjct: 623 ADSVRKLANTSAQATTRIAGLIKSVQAEVQDVIVEAEEGTREVEQGYRIAGSAGQRLQDI 682
Query: 337 AEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSAL 396
E+ E ++++L E + + S E AA ++++ A+ SA+
Sbjct: 683 GELTE----RSAQLAESIAAS----------TQEQVQSVERVNAAVQQIAEVAQRSESAV 728
Query: 397 QELRESVKELDRLVDVLMEQISKFKL 422
Q+ R + ++L+ L L +++F+L
Sbjct: 729 QQGRTAAQQLEDLARQLDTSLARFRL 754
>pir||H83324 probable chemotaxis transducer PA2573 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948634|gb|AAG05961.1|AE004685_7 (AE004685) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 535
Score = 127 bits (315), Expect = 3e-28
Identities = 82/330 (24%), Positives = 172/330 (51%), Gaps = 27/330 (8%)
Query: 82 IAQGDLS----VEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENI 137
IAQG+L V+ + G ++++ + ++++++ Q++ I+ + ++ + ++ + +
Sbjct: 222 IAQGNLQEPIGVDSNDEAG---QLQRALGEMQENLRQMITIIRQESEELHDTSQSIGQTS 278
Query: 138 EQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMA 197
+ + Q A++ ++ + NIS+++D H + +S E
Sbjct: 279 QSIVHGASQQADSATSMAASMEEMITNISQISD-----HADNARVISAKSE--------- 324
Query: 198 QLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKS---IENITNVISSISEQTNL 254
+LA GG+ + +E +SR+ + + ++ + +G+S I +I VI I+EQTNL
Sbjct: 325 ELASSGGQV---ILNVVEGMSRIADVVNQSSTSITALGQSSDEIHSIIQVIKGIAEQTNL 381
Query: 255 LALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQ 314
LALNAAIEAARAGEAG+GFAVVADE+R LA + ++ ++I +I++I G+++ +
Sbjct: 382 LALNAAIEAARAGEAGRGFAVVADEVRGLAARTTQSTQEITAMIERIRASTGQAINSMEA 441
Query: 315 GAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAAS 374
G V +++ + ++ + E+ + + ++ +E + +E +A
Sbjct: 442 GVSRVNEGVSFARQAGVSINEILDGTRHAASVVDEISQTIREQSRASDEIAQRVELIAQR 501
Query: 375 AEETTAAAEEVSAAAEEQSSALQELRESVK 404
+++ T A E++A A + +R SV+
Sbjct: 502 SQQNTQAMHEMAATARRLNEVAATMRSSVE 531
>sp|P71410|HTR2_HALSA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (METHYL-ACCEPTING
PHOTOTAXIS PROTEIN II) (MPP-II) >gi|11385312|pir||T44946
transducer protein htrII [validated] - Halobacterium
salinarum >gi|1527137|gb|AAC44369.1| (U62676) phototaxis
transducer II [Halobacterium salinarum]
Length = 765
Score = 126 bits (314), Expect = 4e-28
Identities = 82/372 (22%), Positives = 175/372 (47%), Gaps = 2/372 (0%)
Query: 60 DIEEYEKQLQREIDEIVKILDRIAQGDLS--VEDKEIGGMGAKVRQGIEDLRKSISQLVL 117
D +E + L+ + + L +A GDL+ V+ A++ + D+ I V
Sbjct: 392 DAQETARALESAAADYEEALTAVADGDLTRRVDASRDHDAMARIGHALNDMLDDIETSVA 451
Query: 118 NIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHD 177
+ V + + ++ + D+ V+ A++++S A + + + ++ + +
Sbjct: 452 AATAFSDHVSDAAQRVEADAGDAIDAGTDVSTAVDEISDGATEQTDRLHEVAGEVDDLSA 511
Query: 178 ISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKS 237
++E T+ + + A +G + A + +++++ E + + +
Sbjct: 512 SAEEVAETVASLADTAGQAASAVDDGRQATEDAVETMDDVADDAEAAADAMDALDSEMAD 571
Query: 238 IENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIREL 297
I I +VI+ I++QTN+LALNA+IEAAR G G GFAVVADE++ LAEES+ AAEDI
Sbjct: 572 IGEIVDVIADIADQTNMLALNASIEAARTGADGDGFAVVADEVKTLAEESRDAAEDIESR 631
Query: 298 IKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQE 357
+ + ++ + + + ++ V + ++ + L V + + + A ++R ++
Sbjct: 632 LLALQGQVSDVADEMRATSDTVSDGRATVGDAATALDDVVSFVADTDTAAGQIRAATDRQ 691
Query: 358 GEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQI 417
++ +A ++ET A A V+ +A Q+ L + ++ +L L + +
Sbjct: 692 AHAASRVASAVDEVAGISQETAAQATAVADSAATQTDTLSSVDDAAADLADRAAALDDLL 751
Query: 418 SKFKLSKDHESQ 429
++F D E +
Sbjct: 752 AEFDAHDDTEPE 763
>pir||E82222 methyl-accepting chemotaxis protein VC1248 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655731|gb|AAF94407.1| (AE004204) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 536
Score = 126 bits (314), Expect = 4e-28
Identities = 97/366 (26%), Positives = 174/366 (47%), Gaps = 57/366 (15%)
Query: 72 IDEIVKILDRIAQGDLSVE-----DKEIGGMGAKVRQGIEDLRKSISQLVLN---IKNAA 123
+D I ++ ++AQGDL+ + E+G + ++ I + ++ + V + + AA
Sbjct: 213 LDTIKDVMKKVAQGDLTAQIPVLGKDELGIVAQRINNSIAAVHDALVESVQSASSVAEAA 272
Query: 124 IDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETV 183
I + + + + + D + Q+A A+NQ++ + + D + D +++T+
Sbjct: 273 IRIASSAEETSQAVVSQRDQLSQLATAMNQMT----------ATVADVAGHAEDTARDTL 322
Query: 184 STMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITN 243
+E A G + + D I +S + + V + E I +T+
Sbjct: 323 DASKE-----------ANLGDKDVHSSVDSIRALSVELGVATDQVNKLKEGVMQISEVTS 371
Query: 244 VISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGD 303
VIS ISEQTNLLALNAAIEAARAG+ G+GFAVVADE+R LA + + ++I+ +I ++
Sbjct: 372 VISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTHHSTDEIQTMINRLQQ 431
Query: 304 KIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEE 363
+ Q+ + S + + S L+ + ++ + KA++
Sbjct: 432 LAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSDKATQ-------------- 477
Query: 364 GLRFLENLAASAEETTAAAEE-------VSAAAEEQSSALQELRESVKELDRLVDVLMEQ 416
+A +AEE +A AEE ++ AA E S A L E ++L L L ++
Sbjct: 478 -------IATAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAEESEKLADLSRQLDQK 530
Query: 417 ISKFKL 422
++ FKL
Sbjct: 531 LTAFKL 536
>pir||E82395 methyl-accepting chemotaxis protein VCA0974 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658413|gb|AAF96870.1| (AE004423) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 561
Score = 126 bits (313), Expect = 5e-28
Identities = 91/336 (27%), Positives = 168/336 (49%), Gaps = 29/336 (8%)
Query: 67 QLQREIDEIVKILDRIAQGDLSVE-DKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAID 125
Q+ I+ + ++ ++AQGDLSV+ D + AK+ Q D+ +++QL ++
Sbjct: 233 QIVAPINSLQSVMRKLAQGDLSVKADADGENEIAKLSQ---DVNTTVTQLYTTVEQL--- 286
Query: 126 VRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVST 185
T++ E+VA + ++A + Q AQ E I ++ + + +
Sbjct: 287 ----TRIS----EEVASASTELAAVMTQAESNAQMELMEIEQVASAVNELASTADNVSDN 338
Query: 186 MEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVI 245
+A+ RE +LAK G ++++ E+++ + V + E + I N+ VI
Sbjct: 339 ASSADATAREADELAKSGLAIFKESSQASEQMALALNDAARVVLRLKEQSEQISNVIEVI 398
Query: 246 SSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQI---- 301
+S+QTNLLALNAAIEAARAGE+G+GFAVVADE+R LA ++ + ++I+ +I+++
Sbjct: 399 RGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQASTKEIQAIIEELQTQS 458
Query: 302 ---GDKIGESVEVTQQGAEVVKTSTEV---IKESVSYL----TQVAEMMEEMEVKASELR 351
D + S+++ Q + + + I ESVS + QVA E+ ++
Sbjct: 459 TMANDSMQTSLDMLTQNKALTAKANDALIGITESVSDINDSNAQVATAAEQQSHVTQDIN 518
Query: 352 EKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSA 387
V + + + + A+++ E + AE+ A
Sbjct: 519 RNVSNMSTLVHQNVTGISQSASASNELSHLAEKQKA 554
>pir||D82077 methyl-accepting chemotaxis protein VC2439 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657014|gb|AAF95581.1| (AE004313) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 433
Score = 125 bits (312), Expect = 6e-28
Identities = 90/335 (26%), Positives = 163/335 (47%), Gaps = 28/335 (8%)
Query: 69 QREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRN 128
QR + E +K+ + GD++ E +E R+ + L+ +A+ ++ +
Sbjct: 122 QRNLSEPIKMDCKDEYGDVARE--------------LEKTRRQLQDLIKLQIDASQELTS 167
Query: 129 HTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEE 188
T+VM ++ + DS Q+ I+Q++ +S+M+ T++ + + ++ S E
Sbjct: 168 LTEVMTMSMSETKDSAQEEFNEIDQLATA-------MSEMSSTVQTVAEHAQNASSLTEN 220
Query: 189 FEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSI 248
+Q A+ G + + ++ E+S+ + + V V E +I ++ I SI
Sbjct: 221 -------ASQQAQTGQQFVKSTISKMSELSKDISSSAQAVNQVEERVVAISSVVGTIRSI 273
Query: 249 SEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGES 308
SEQTNLLALNAAIEAARAGEAG+GFAVVADE+R LA+ ++ A +I+E+I Q+ +
Sbjct: 274 SEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQNATVEIQEMISQLQSSANSA 333
Query: 309 VEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFL 368
V + ++ E+I + S L + ++ + ++ Q+ EE L
Sbjct: 334 VNLMEKSVVQAADGVELITNAGSELDGIVNQVQLLNDMNFQIAAAAGQQSNVAEEMNENL 393
Query: 369 ENLAASAEETTAAAEEVSAAAEEQSSALQELRESV 403
N+ E + E+ +E S +EL +
Sbjct: 394 NNVRELVEGSVTVMTELLETSEIMQSNAEELDRKI 428
>pir||B82351 methyl-accepting chemotaxis protein VC0216 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9654623|gb|AAF93392.1| (AE004111) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 564
Score = 125 bits (311), Expect = 8e-28
Identities = 84/333 (25%), Positives = 163/333 (48%), Gaps = 18/333 (5%)
Query: 72 IDEIVKILDRIAQG--DLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNH 129
+ +V L +A G DL+ K + + I D+ K+ + + + D+R
Sbjct: 239 LQHVVSSLQAVAAGGGDLTARIK------VESQDEIGDVAKAFNAFMDKLHPLMTDIRAS 292
Query: 130 TKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEF 189
++ +++ Q + ++ +E + +++M+ T R +++ T ST +
Sbjct: 293 ANTVEAAAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAR---EVASNTYSTAQAI 349
Query: 190 EASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSIS 249
E++ ++A KE A D I E+ + + V +++ I + VI I+
Sbjct: 350 ESANSQIAVAQKEVN----LAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIA 405
Query: 250 EQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESV 309
EQTNLLALNAAIEAARAGE G+GFAVVADE+R LA ++ + ++I E++ + + ++V
Sbjct: 406 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAV 465
Query: 310 E---VTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLR 366
+ ++Q+ E + IKES++ +++ ++ +M ++ + E+ E I + L
Sbjct: 466 QSMNISQERGEKTALESVQIKESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLV 525
Query: 367 FLENLAASAEETTAAAEEVSAAAEEQSSALQEL 399
++ + E+ E VSA+ + L
Sbjct: 526 AIQQIVNELSESFKQTESVSASLSHSGQQMGTL 558
>gb|AAG37852.1|AF298190_2 (AF298190) methyl-accepting-chemotaxis-protein [Sinorhizobium
meliloti]
Length = 593
Score = 124 bits (308), Expect = 2e-27
Identities = 91/348 (26%), Positives = 166/348 (47%), Gaps = 42/348 (12%)
Query: 55 VKVSADIEEYEKQLQREIDEIVKILDRIAQGDL--SVEDKEIGGMGAKVRQGIEDLRKSI 112
VK + D+ E I+ + L +A+GDL S++ + M E +RK
Sbjct: 237 VKFATDVTER----MAAINSLGAGLRALAEGDLAQSIDTPFVPSM--------EMVRKDF 284
Query: 113 SQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTM 172
++ ++ + A + + EN +A +++ A + +S +++ ++
Sbjct: 285 NEALVRLCRAM-------QTVGENASAIAGGAREIRSAADDLSKRTEQQAASV------- 330
Query: 173 RYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVA 232
+ET + ++E ++ + ++ A+E G + D E +++ + +
Sbjct: 331 -------EETAAALDEITTTVADSSRRAEEAGNLVAKTKDGAERSGLVVKSAIGAMGQIE 383
Query: 233 EMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAE 292
+ + I NI VI I+ QTNLLALNA +EAARAGEAGKGFAVVA E+R+LA+ S AA+
Sbjct: 384 QSSREISNIIGVIDDIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSASAAK 443
Query: 293 DIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELRE 352
DI+ LI G+ + V + Q ++T ++E ++ + E E E+ +
Sbjct: 444 DIKTLITASGEHVRNGVSLVGQTGTALETILAQVQEINHNVSAIVEAAREQSTGLKEINQ 503
Query: 353 KVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELR 400
V + ++ AA EE+TAA+ +S A+ + L++ R
Sbjct: 504 AVNAMDQTTQQN-------AAMVEESTAASHRMSQEADALHALLRQFR 544
>pir||F82174 methyl-accepting chemotaxis protein VC1643 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656156|gb|AAF94794.1| (AE004242) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 596
Score = 123 bits (306), Expect = 3e-27
Identities = 96/379 (25%), Positives = 185/379 (48%), Gaps = 48/379 (12%)
Query: 69 QREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRN 128
Q EI++ + ++ + L V + +V + L S + + I V
Sbjct: 237 QHEINQFIWMVSLLGAFALIVTTSLALLIAKRVNNAVHHLASSATHIAAGDLTQRIPVTG 296
Query: 129 HTKV--MKENIEQVADSVQQVAEAI-NQVSIEAQREQENISKMTDTMRYIHDISKET--- 182
+ + + + + ++ S Q+V + + VS A +EN + T + I + +T
Sbjct: 297 NDEFSDIAKYVNRIVTSFQEVISSNRHSVSALATAAEENAAVAMQTKQNIVEQQSQTQQI 356
Query: 183 VSTMEEFEASMREMAQ---LAKEGGEKGRQAADQ-----------IEEISRMMEKIEETV 228
+ + +F A++ E+AQ LA E E+ QAA Q IE +S ++K+ +
Sbjct: 357 AAAIHQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMIEGLSNDLQKMLAAM 416
Query: 229 RGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESK 288
+ +A+ + I ++ +VI SISEQTNLLALNAAIEAARAGE G+GFAVVADE+R LA ++
Sbjct: 417 QLLAKDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQ 476
Query: 289 KAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKAS 348
++ + I + ++++ +S + +QG + E + + + L+Q+ ++ + +
Sbjct: 477 ESTKQILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQITANVDRISTMNT 536
Query: 349 ELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEE-------VSAAAEEQSSALQELRE 401
+ +A ++EE +A EE +S + + + Q+ E
Sbjct: 537 Q---------------------IATASEEQSAVTEEINKNIITISEISNQTALGAQQSSE 575
Query: 402 SVKELDRLVDVLMEQISKF 420
+ EL RL + + ++++++
Sbjct: 576 ATLELARLAESMQQEVARY 594
>pir||G82618 pilus biogenesis protein XF1953 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9107053|gb|AAF84755.1|AE004014_9
(AE004014) pilus biogenesis protein [Xylella fastidiosa]
Length = 693
Score = 123 bits (305), Expect = 4e-27
Identities = 106/431 (24%), Positives = 199/431 (45%), Gaps = 59/431 (13%)
Query: 3 GGAMVRVTIITPVIPFVLTVIPAVFNSIPGAIVGGIVGVGIASYINYKGETKVKVSADIE 62
G VR T I P F LTVI + + + IVG+ ++ I E + + A +E
Sbjct: 309 GVGSVRDTRIFP--NFWLTVIFGLLSLV------SIVGLAWSTVIYRSREQEQRYQAQVE 360
Query: 63 EYEKQLQREIDEIVKILDRIAQGDL----SVEDKEIGGMGAKVRQGIEDLRKSISQLVLN 118
+ + Q+ I +++ + I +GDL SV ++ G + + +++LR+ ++ +N
Sbjct: 361 -FNSRNQQAIMRLLEEIISIGEGDLTVKASVTEEMTGAIADAINCAVDELRQLVA--TIN 417
Query: 119 IKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDI 178
+A + V H + + ++AEA + + E IS++ ++ +
Sbjct: 418 TTSAKVAVSAH---------ETQTTAMRLAEAAGHQANQITTVSERISEIAASIEQVSRN 468
Query: 179 SKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSI 238
S E+ + E A + +E + Q DQI+E S+ ++++ E+ + I
Sbjct: 469 SAESAEVAQRSVVIAAEGAGVVRETIQGMDQIRDQIQETSKRIKRLGES-------SQEI 521
Query: 239 ENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELI 298
+I +I+ ISEQTN+LALNAA++AA AGEAG+GFA+VADE+++LAE + A I L+
Sbjct: 522 GSIVELINDISEQTNILALNAAVQAASAGEAGRGFAIVADEVQRLAERTSSATRRIESLV 581
Query: 299 KQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEG 358
+ I E+V +Q V + + +++ + L ++ + +
Sbjct: 582 RAIQVDTNEAVSSMEQTTAEVVSGARLAEDAGTALIEIEHVSNTLN-------------- 627
Query: 359 EKIEEGLRFLENLAASAEETTAAAEEVSAA-------AEEQSSALQELRESVKELDRLVD 411
++N++ +A + AAA +++ + S + ES+ L L
Sbjct: 628 -------HLIKNISIAAHQQAAAATDITQTMGVIRQITSQTSQGAGKTAESIGRLAGLAA 680
Query: 412 VLMEQISKFKL 422
L + FKL
Sbjct: 681 ELRRSAANFKL 691
>pir||C83440 probable chemotaxis transducer PA1646 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947615|gb|AAG05035.1|AE004592_6 (AE004592) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 652
Score = 122 bits (303), Expect = 7e-27
Identities = 93/329 (28%), Positives = 163/329 (49%), Gaps = 35/329 (10%)
Query: 70 REIDEIVKILDRIAQGDLSVE-----DKEIGGMGAKVRQGIEDLRKSISQL---VLNIKN 121
R + + + + RIA+GDL+V E+G + A +R LR +SQL V I
Sbjct: 327 RPLRQAMGVAQRIAEGDLAVRVDSERRDEVGQLMAAMRAMTGSLRGIVSQLQDGVGRIAG 386
Query: 122 AAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKE 181
A+ + T + I+ +QVA A+NQ++ +H+++
Sbjct: 387 ASEALSGVTTRTRLGIDSQRAETEQVATAMNQMAAT-----------------VHEVAHN 429
Query: 182 TVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENI 241
EE + G E RQ ++IE ++ + +V ++ + I ++
Sbjct: 430 A----EEAAGAAESADGKVSVGQEVVRQTLERIERLAEAVRAATASVEALSADSQRIGSV 485
Query: 242 TNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQI 301
+VI S++EQTNLLALNAAIEAARAG+ G+GFAVVADE+R LA ++++ +I LI +
Sbjct: 486 LDVIKSVAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALARRTQQSTAEIETLIGAL 545
Query: 302 GDKIGESVEVTQQGAEVVKTS------TEVIKESVSYLTQVAEMMEEMEVKASELREKVI 355
+ ++V+ Q+ ++V S TE +++ + + M + ASE + V
Sbjct: 546 QNGTQQAVQRMQRSHQLVDQSVDDALQTEAALGNIATAVALIQQMNQQIAAASEQQSAVA 605
Query: 356 QEGEKIEEGLRFLENLAASAEETTAAAEE 384
+E + +R + + +A A ++TA++ E
Sbjct: 606 EEINRSVTAIREVADQSAQAMQSTASSSE 634
>gb|AAG34158.1|AF312879_1 (AF312879) methyl-accepting chemotaxis protein McpX [Sinorhizobium
meliloti]
Length = 788
Score = 122 bits (303), Expect = 7e-27
Identities = 86/334 (25%), Positives = 162/334 (47%), Gaps = 41/334 (12%)
Query: 68 LQREI-DEIVKILDRIAQGDLSVE-DKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAID 125
LQR+I + K L ++ GDL+ + G A++++ +S+ + + + ++ ++
Sbjct: 423 LQRDIVARLGKALSHLSAGDLAFRLTGDFPGEYAQLKRDFNATMESLEETIRTVNHSVVN 482
Query: 126 VRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVST 185
+ + T +++ A N +S +++ ++ +ET +
Sbjct: 483 IGSGTS--------------EISGAANDLSHRTEQQAASL--------------EETAAA 514
Query: 186 MEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVI 245
++E + + A+ AK + A+ E+ +++K ++G+ + + I VI
Sbjct: 515 LDELTSQVNASAENAKVAAKSVEVASSDAEQSGEVVQKAIAAMQGIEQSSHEVSRIIGVI 574
Query: 246 SSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKI 305
I+ QTNLLALNA +EAARAG+AGKGFAVVA E+R+LA+ S AA++I+ LI ++
Sbjct: 575 DEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEVRELAQRSANAAKEIKTLINTSAGQV 634
Query: 306 GESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGL 365
E V++ + ++ E + + + Q++ E V E+ V Q + ++
Sbjct: 635 REGVDLVGKAGGALEKIAEQVVQINGLIRQISSSASEQAVGLKEINSAVNQMDQVTQQN- 693
Query: 366 RFLENLAASAEETTAAAEEVSAAAEEQSSALQEL 399
AA EETTAA S A +++ AL L
Sbjct: 694 ------AAMVEETTAA----SMALNDEARALSAL 717
>pir||C70174 methyl-accepting chemotaxis protein (mcp-2) homolog - Lyme disease
spirochete >gi|2688522|gb|AAC66955.1| (AE001161)
methyl-accepting chemotaxis protein (mcp-2) [Borrelia
burgdorferi]
Length = 715
Score = 122 bits (302), Expect = 1e-26
Identities = 96/380 (25%), Positives = 184/380 (48%), Gaps = 48/380 (12%)
Query: 71 EIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHT 130
+ID++ ++ ++ GDL+ + + +K + I + N+KN ++
Sbjct: 334 KIDKLNVVIPKVKNGDLTFK------IESKGKDSISSTINLFGHFIENLKNVINSLQERV 387
Query: 131 KVMKENIEQVADSVQQVAEAINQVSIEAQREQENISK----MTDTMRYIHDISKETVS-- 184
K++KEN + + + + I + ++ QE + K +++T I +SK S
Sbjct: 388 KLLKENGDHLFSEINKTHNTIKNSNQYIEKTQEEVEKQVEFISNTTNIIESLSKNISSLD 447
Query: 185 --------TMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMME----KIEETVRGVA 232
++E+ +++ EM + E ++AA EE+ R + K EE + +
Sbjct: 448 NSIETQAASVEQSSSAIEEMIGGIQSITEITQKAAKSTEELKRFSDDGRKKQEEVITQIK 507
Query: 233 EMGKS---IENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKK 289
E+ K+ ++ ++ISSI+ QTNLL++NAAIEA+ AGEAGKGFA+VA+EI+ LAE+
Sbjct: 508 EIFKNSTRLQEANSLISSIASQTNLLSMNAAIEASHAGEAGKGFAIVAEEIKDLAEQVTS 567
Query: 290 AAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASE 349
+E + I +I D I ++V +E+ + I +S++ + QV E E
Sbjct: 568 QSESVASSINEIMDSITKTVNT----SELTNKAFNQIFDSINLVVQVIE----------E 613
Query: 350 LREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRE-------S 402
+ + ++ +E L+ L + E + ++ +E S ++ L E S
Sbjct: 614 INHTMQEQSIGSQEILKALNTMREITYEVKIGSNDMFRGNKEIISTIKLLGEINITVSNS 673
Query: 403 VKELDRLVDVLMEQISKFKL 422
+K L ++ L+E I + K+
Sbjct: 674 MKGLKEEINTLVEAIERIKV 693
>pir||A83451 aerotaxis receptor Aer PA1561 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947522|gb|AAG04950.1|AE004584_6
(AE004584) aerotaxis receptor Aer [Pseudomonas
aeruginosa]
Length = 521
Score = 122 bits (302), Expect = 1e-26
Identities = 79/283 (27%), Positives = 141/283 (48%), Gaps = 7/283 (2%)
Query: 133 MKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEAS 192
+K + ++ D+ + + E Q A + + + E +T +E +
Sbjct: 239 LKTCLTRLQDTAEYLTEQARQADTLAHHSSAGLEQQRAETEQVATAVNEMAATTQEVANN 298
Query: 193 MR---EMAQLAKEGGEKGRQ-AADQIEEISRMMEKIEET---VRGVAEMGKSIENITNVI 245
++ + Q A E +GR AA+ I R+ E + ET V +A+ I + +VI
Sbjct: 299 VQLTADATQKANELTSRGRDIAAETRNAIQRLSESVGETGAAVSRLAQDSNEIGGVVDVI 358
Query: 246 SSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKI 305
I++QTNLLALNAAIEAARAG+ G+GFAVVADE+R LA+ + + E I LI ++ +
Sbjct: 359 KGIADQTNLLALNAAIEAARAGDQGRGFAVVADEVRSLAQRTAASTEQIHHLIAKLQNTA 418
Query: 306 GESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGL 365
++V + G + + + + E+ S L ++E + + +++ ++ EE
Sbjct: 419 NDAVHTMESGLQQAEAGVQRVLEADSALVGISEAVSNITEMTTQIAAAAEEQSAVAEEIN 478
Query: 366 RFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDR 408
R + +AA AE+T+ A + +EE ++ Q V+ +R
Sbjct: 479 RNISTIAALAEQTSDEALRTAKLSEELTTTAQSQYSLVERFNR 521
>gb|AAC46418.1| (AF022807) putative methyl accepting chemotaxis protein [Rhizobium
leguminosarum]
Length = 715
Score = 122 bits (302), Expect = 1e-26
Identities = 105/372 (28%), Positives = 180/372 (48%), Gaps = 52/372 (13%)
Query: 42 GIASYINYKGETKVKVSADIEEYEKQLQREID---------EIVKILDRIAQGDLSVEDK 92
G A I + +++A+ E ++ +R D +I LD +++GDL+V
Sbjct: 367 GRAKLIAEANAERARLAAEEERLRQEAERLSDAQVMEHAFRQISVGLDALSKGDLTVRVG 426
Query: 93 EIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAIN 152
E+ ++R + S+ + V + A +R+ + +++ A N
Sbjct: 427 EVDHRYVRIRDHFNNSVASLEEAVDAVIRAVGTIRS--------------GLAEISTASN 472
Query: 153 QVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQL---AKEGGEKGRQ 209
+ A+R ++ + + +T+ + ++++ T E + +A A++GGE +
Sbjct: 473 DL---ARRTEQQAASLEETVAALGEVTRGVNGTAEGASRAQGVVATARTNAEKGGEIVAR 529
Query: 210 AADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEA 269
A D + EI KI NI +VI I+ QTNLLALNA +EAARAGEA
Sbjct: 530 AIDAMTEIQNSSSKIG--------------NIISVIDEIAFQTNLLALNAGVEAARAGEA 575
Query: 270 GKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKES 329
GKGFAVVA E+R+LA+ S AA +I++LI ++ V++ + S E I E
Sbjct: 576 GKGFAVVAQEVRELAQRSANAAREIKQLISTSSAQVKTGVQLVGESG----LSLEQIVEQ 631
Query: 330 VSYL-TQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAA 388
V+ + VAE+ +A+ LRE V G++++ + + AA EETTAAA+ ++
Sbjct: 632 VTAMNATVAEIAVAAREQATSLRE-VSAAGDQMD---KVTQQNAAMVEETTAAAQSLTHE 687
Query: 389 AEEQSSALQELR 400
E + L+ R
Sbjct: 688 TESLAELLRRFR 699
>pir||B82215 methyl-accepting chemotaxis protein VC1313 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655802|gb|AAF94471.1| (AE004211) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 543
Score = 121 bits (301), Expect = 1e-26
Identities = 84/355 (23%), Positives = 172/355 (47%), Gaps = 39/355 (10%)
Query: 75 IVKILDRIAQGDLS-------VEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVR 127
++K + IA+GDLS + + E+G + Q ++LR+ I +++
Sbjct: 220 VMKQSNAIAKGDLSQTMDRSSIGNDELGTLANASEQMQQNLRQLIDEII----------- 268
Query: 128 NHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTME 187
+ Q++ +V+++ + NQ + + +Q I+++ M + + E
Sbjct: 269 -------SAVTQLSSAVEEMTQISNQSADGMKEQQYQITQVATAMAQMKAAVADVARNTE 321
Query: 188 EFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISS 247
+ + ++EG + I++++ ++ + +TV + + I + +VI S
Sbjct: 322 DSASQAMAANHKSQEGARENASMVRSIQQVADIIGEAGQTVSELEQQSSQINVVVDVIRS 381
Query: 248 ISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGE 307
I++QTNLLALNAAIEAARAGE+G+GFAVVADE+R LA ++ + +I +I+++
Sbjct: 382 IADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAGRTQDSTGEITTIIEKL------ 435
Query: 308 SVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRF 367
Q A+ K +TE + S+ + + + + E + G +I
Sbjct: 436 -----QVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIADVGTQIASACSE 490
Query: 368 LENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKL 422
+++ A+E + E + A++E + Q+ ++ +EL +L L + + +FK+
Sbjct: 491 QDSV---ADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLRRFKI 542
>pir||D82218 methyl-accepting chemotaxis protein VC1289 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655776|gb|AAF94448.1| (AE004208) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 631
Score = 121 bits (300), Expect = 2e-26
Identities = 94/362 (25%), Positives = 168/362 (45%), Gaps = 39/362 (10%)
Query: 68 LQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVR 127
L R++ + K L+ IA GD + + + + + L + + V N+
Sbjct: 302 LFRDLGRVSKALEEIASGDADLTQR----LEPRSDDEVGQLASNFNTFVSNM-------- 349
Query: 128 NHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTME 187
HT V+K + V+ ++ Q ++ + +A+ I D + + E + +
Sbjct: 350 -HTMVLK--LSHVSAALAQQSKV---TAAQAEERSSRIRLQQDEINMVATAINEMAAATQ 403
Query: 188 EFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEM-------GKSIEN 240
E + AQ A E A Q+ + R ++ + E V+ E+ G I
Sbjct: 404 EIAGNADHTAQNAGEAVTACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQIST 463
Query: 241 ITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQ 300
I + I +I+EQTNLLALNAAIEAARAGE G+GFAVVADE+R L++ + + ++I+++I+
Sbjct: 464 ILSTIQNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIET 523
Query: 301 IGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEK 360
+ G++V + + TS + E+ L Q+ + +E + A+++ ++
Sbjct: 524 LQATTGKAVGIMDDSRRLADTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASV 583
Query: 361 IEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKF 420
E R N + + A+E +AAE+ + EL L L ++I +F
Sbjct: 584 TSEITR---NTVGIRDVSNDLAQEAHSAAEQAA-----------ELSELSHELEQEIRRF 629
Query: 421 KL 422
KL
Sbjct: 630 KL 631
>gb|AAD34887.1|AF141674_1 (AF141674) putative chemotaxis chemoreceptor McpG [Rhizobium
leguminosarum]
Length = 653
Score = 120 bits (299), Expect = 2e-26
Identities = 84/325 (25%), Positives = 154/325 (46%), Gaps = 34/325 (10%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAID 125
+Q + + ++ L +A GDL+ + +G +E LR + V ++ A
Sbjct: 300 EQTDKAVGQLGDALQALADGDLTQQ------IGTPFIPSLEKLRADFNSAVEKLRAAMQK 353
Query: 126 VRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVST 185
V +N +A Q++ A + ++ +++ ++ +ET +
Sbjct: 354 VA-------QNASAIAAGAQEIRSASDDLAKRTEQQAASV--------------EETAAA 392
Query: 186 MEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVI 245
+EE ++ + + A+E G+ R+ D E ++ + + + I +I VI
Sbjct: 393 LEEITTTVADSSNKAQEAGQLVRKTKDSAERSGSVVRDAVDAMGKIESSATEIGSIIGVI 452
Query: 246 SSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKI 305
I+ QTNLLALNA +EAARAGEAGKGFAVVA E+R+LA+ S KAA++I+ELI +
Sbjct: 453 DEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSAKAAKEIKELINASNGHV 512
Query: 306 GESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGL 365
V + + + +K E +++ + + +E E+ V ++++G
Sbjct: 513 KSGVALVGETGKALKEIAEQVQQVDGNVGAIVGASQEQATGLKEINTAV----NRMDQG- 567
Query: 366 RFLENLAASAEETTAAAEEVSAAAE 390
+ AA EE TAA+ ++ A+
Sbjct: 568 --TQQNAAMVEEATAASHNLAKEAD 590
>pir||F82392 methyl-accepting chemotaxis protein VCA0988 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658429|gb|AAF96884.1| (AE004425) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 518
Score = 120 bits (297), Expect = 4e-26
Identities = 79/318 (24%), Positives = 156/318 (48%), Gaps = 28/318 (8%)
Query: 99 AKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSV-------QQVAEAI 151
++++ ++ + ++ +V I++++I + K+ +N AD++ +Q+A AI
Sbjct: 222 SEIQLAMKMRQSELNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAI 281
Query: 152 NQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAA 211
Q++I A N +D + + +++ + +E Q
Sbjct: 282 TQMNITATEIAHNAQAASDATVHAKNAARDGMHAVE---------------------QTV 320
Query: 212 DQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGK 271
D I E++ M+ + ++ I + VI SI+EQTNLLALNAAIEAARAG+ G+
Sbjct: 321 DAIGEMASQMKTASSVIEQLSSQSAMIGQVMEVIQSIAEQTNLLALNAAIEAARAGDQGR 380
Query: 272 GFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVS 331
GFAVVADE+RKLA+ S ++ ++I+E+I I +VE +QG ++ + + S
Sbjct: 381 GFAVVADEVRKLAQRSTESTKEIQEVITSIQTSTRNAVETIEQGNKLSVSCVDNAHLSGD 440
Query: 332 YLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEE 391
LT + + ++ ++ ++ + + E+ R +++++ + ET AE +
Sbjct: 441 KLTALLSQVSDITMRNEQIATAIEEMANVTEDMNRSVQSISDVSTETLGLAENTQNECRQ 500
Query: 392 QSSALQELRESVKELDRL 409
+ L + V + R+
Sbjct: 501 LAHNLAQQTSLVAQFRRV 518
>pir||E83325 probable chemotaxis transducer PA2561 [imported] - Pseudomonas
aeruginosa (strain PAO1) >gi|8307680|dbj|BAA96488.1|
(AB039332) chemotactic transducer CtpH [Pseudomonas
aeruginosa] >gi|9948621|gb|AAG05949.1|AE004684_4
(AE004684) probable chemotaxis transducer [Pseudomonas
aeruginosa]
Length = 568
Score = 120 bits (297), Expect = 4e-26
Identities = 88/359 (24%), Positives = 173/359 (47%), Gaps = 54/359 (15%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAID 125
+ L R + +++ + +++ GD G ++ +D ++ +++ +D
Sbjct: 239 RNLVRPVQRLIEHIAQLSHGDF----------GERIEIRRKDELGKLALAANTLRDFLVD 288
Query: 126 VRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVST 185
+ + + +++ + S+ +A S+ A +E S+ + + +
Sbjct: 289 IFDRLRRSTRDLDSASGSLNAIA------SLMAAGTREQFSR-----------TDQVATA 331
Query: 186 MEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIEN----- 240
M+E A+ +E+A+ A G+ R A + + R + +EET+R + EM K I++
Sbjct: 332 MQEMSATAQEVARYA---GDAARAADEADDSAQRGEDVMEETIRSIGEMRKEIDHTVEVI 388
Query: 241 ------------ITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESK 288
+ +VI I+EQTNLLALNAAIEAARAG+AG+GFAVVADE+R LA+ +
Sbjct: 389 RQLESDSGRIGKVLDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRTLAQRTA 448
Query: 289 KAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQV---AEMMEEMEV 345
++ +I ++I + + + + G + E + + + L Q+ E + +M
Sbjct: 449 ESIAEIHQIIDTVQNGAVNAARAIESGQSRSEAGAEQVANAGAMLRQITASVESIRDMNR 508
Query: 346 KASELREKVIQEGEKIEEGLRFLENLAAS----AEETTAAAEEVSAAAEEQSSALQELR 400
+ + E+ E+I L + ++A+S E+T AA+ ++ + + ALQ LR
Sbjct: 509 QIATAAEEQTAVAEEISRNLTEIASIASSNQEQVEQTEAASRDLHGLSAQLGDALQRLR 567
>pir||C83080 probable chemotaxis transducer PA4520 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950762|gb|AAG07908.1|AE004866_2 (AE004866) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 673
Score = 120 bits (297), Expect = 4e-26
Identities = 89/350 (25%), Positives = 171/350 (48%), Gaps = 42/350 (12%)
Query: 72 IDEIVKILDRIAQGDLSVEDK-----EIGGMGAKVRQG---IEDLRKSISQLVLNIKNAA 123
+ ++ ++++R+A GD++V + E+G +G + I DL + +SQ V ++
Sbjct: 350 LKDLGRMMERVAGGDMTVSFQARSRDELGELGQSFNESVAKIHDLIERVSQTVGEVERQT 409
Query: 124 IDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETV 183
+ V + + + + ++QVA A+NQ++ AQ + + + + +++ET+
Sbjct: 410 LRVESVSAESNQAVAGQRSQIEQVATAMNQMAATAQEVARSAAMAVSSA---NSVNQETL 466
Query: 184 STMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGK---SIEN 240
S E+ Q+ I R+ +I+++V + + SI
Sbjct: 467 SGRSLVES---------------------QVGSIQRLAGEIDQSVAAINRLASDSASISQ 505
Query: 241 ITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQ 300
+ +VI I+EQTNLLALNAAIEAARAGE G+GFAVVADE+R LA+ ++++ +I ++I +
Sbjct: 506 VLDVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQQSTAEIEQMILR 565
Query: 301 IGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEK 360
+ + +V + + +S +V+ QV + +E + + ++ Q
Sbjct: 566 LQGGVDAAV-------KAMGSSHHTADGTVNESAQVQQALENILGAVGMIVDQNQQIAAA 618
Query: 361 IEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLV 410
E+ ++ + E A E + A + A +EL V +L RL+
Sbjct: 619 AEQQTAVAHDIDQNIVEINQAGERTAEGASQTERASRELGAQVTQLKRLI 668
>gb|AAG34154.1|AF312876_1 (AF312876) methyl-accepting chemotaxis protein McpU [Sinorhizobium
meliloti]
Length = 707
Score = 120 bits (297), Expect = 4e-26
Identities = 83/332 (25%), Positives = 152/332 (45%), Gaps = 34/332 (10%)
Query: 67 QLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDV 126
++Q +D + L R+A GDL+ +G+ ++ LR+ + V + N V
Sbjct: 390 EVQHAVDALATGLGRLADGDLAYR------IGSPFADRLDRLREDFNNSVAKLHNTLCAV 443
Query: 127 RNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTM 186
+ + + ++ + +A Q + + ET + +
Sbjct: 444 GANARAIDAGATEIRSAADDLARRTEQQAASVE---------------------ETAAAL 482
Query: 187 EEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVIS 246
EE ++R+ A A+E G + E+ +++ E + + + I NI VI
Sbjct: 483 EEITTTVRDSAHRAEEVGALVARTRAGAEKSGEVVQNAVEAMHAIEKSSGEISNIIGVID 542
Query: 247 SISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIG 306
I+ QTNLLALNA +EAARAGEAGKGFAVVA E+R+LA+ S AA++I+ LI G+++
Sbjct: 543 DIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSANAAKEIKALITTSGEQVH 602
Query: 307 ESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLR 366
V + ++ ++E +++ + E E+ V +++G
Sbjct: 603 SGVTLVGDTGRALQAIVVEVQEINKHVSAIVTATREQSTGLQEINTAV----NTMDQG-- 656
Query: 367 FLENLAASAEETTAAAEEVSAAAEEQSSALQE 398
+ AA E+ TAA+ +++ A ++ L +
Sbjct: 657 -TQQNAAMVEQQTAASHGLASEAAALNALLAQ 687
>gb|AAF61289.1|AF064528_2 (AF064528) phototransducer; methyl-accepting chemotaxis protein;
Ptr [Rhodospirillum centenum (Rhodocista centenaria)]
Length = 671
Score = 119 bits (296), Expect = 5e-26
Identities = 106/358 (29%), Positives = 169/358 (46%), Gaps = 47/358 (13%)
Query: 81 RIAQGDLSVE------DKEIGGMGAKV---RQG-IEDLRKSISQLVLNIKNAAIDVRNHT 130
R+A GD +V+ EIG MG V R G IE R I Q K A + R
Sbjct: 336 RLATGDTNVDISGQKRKDEIGEMGRAVAVFRDGLIERQRLRIEQD--RAKQRAEEER--- 390
Query: 131 KVMKENIEQVADSVQQ-VAEAINQVSIEAQREQENISKMTDTMRY-------IHDISKET 182
K + ++ADS + V + +VS A Q+N +++ R + S +
Sbjct: 391 ---KAALTRLADSFEAGVRGVVTEVSGMAHHIQDNAGELSAAARQTSSQAEVVAAASGQA 447
Query: 183 VSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENIT 242
+ ++ AS E++ E G + ++++++ + + M + E V +A +I ++
Sbjct: 448 SNNVQTVAASAEELSASIAEIGRQVQRSSERAQAATGMAQGANEQVEALAAQADAIGSVV 507
Query: 243 NVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIG 302
+IS I+ QTNLLALNA IEAARAGEAGKGFAVVA E++ LA ++ +A ED
Sbjct: 508 QLISEIAAQTNLLALNATIEAARAGEAGKGFAVVAGEVKSLASQTARATED--------- 558
Query: 303 DKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIE 362
IG + QQ + +VS + +A M+ EM A+ + V Q+
Sbjct: 559 --IGRQIARMQQASH----------GTVSAIRGIAGMITEMNEIAAGIAAAVQQQAAATG 606
Query: 363 EGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKF 420
E R ++ A+ EE + +V +AA+ A +L ++ + L D L Q+ F
Sbjct: 607 EISRSVQQAASGTEEIDRSIGDVRSAADRTGRASADLLDAARLLSSQADTLRRQVDGF 664
>gb|AAD13638.1| (U84257) methyl-accepting chemotaxis protein B [Treponema
denticola]
Length = 369
Score = 119 bits (295), Expect = 6e-26
Identities = 88/368 (23%), Positives = 178/368 (47%), Gaps = 48/368 (13%)
Query: 50 KGETKVKV----SADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGI 105
KG+ V++ + +I + + + I++I + + + +S+E +G ++ +
Sbjct: 43 KGDLTVRLPINGNDEITDLSEYFNQTIEKIGAAIKNVGKNSVSME-----AIGEELASNM 97
Query: 106 EDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENI 165
+I+++ NI+ V+N T ++ + A +++Q+ I Q++ + + ++
Sbjct: 98 TQTASAINEISANIEG----VKNQTLTQAASVTETAATIEQIVRTIKQLNNSIENQAASV 153
Query: 166 SKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIE 225
++ T +++EE A++ + Q ++ + + A E+ +
Sbjct: 154 ARST--------------ASIEEMVANIASITQTLEKTYDVVKNLASATEDGKETIITSN 199
Query: 226 ETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAE 285
+ +AE S+ ++VI I+ QTNLLA+NAAIEAA AGEAGKGFAVVADEIRKLAE
Sbjct: 200 SVTQKIAEESGSLMEASSVIQHIASQTNLLAMNAAIEAAHAGEAGKGFAVVADEIRKLAE 259
Query: 286 ESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEV 345
+S + I +K + +I E + S++ +++ S + ++E ++ M
Sbjct: 260 DSATQGKTITSTLKTLSSEI-----------ESLSVSSKTVEDKFSTIFNLSEQVKSM-- 306
Query: 346 KASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKE 405
+ L E + ++ +E L ++N+ EV A +EE + + E + +
Sbjct: 307 -SDRLTEAMHEQENGSKEVLGAIKNI-------NTVTVEVQAGSEEMLKGGEGVAEEMLK 358
Query: 406 LDRLVDVL 413
LD L ++
Sbjct: 359 LDNLTRMI 366
>pir||E82508 methyl-accepting chemotaxis protein VCA0031 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657412|gb|AAF95945.1| (AE004347) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 521
Score = 119 bits (295), Expect = 6e-26
Identities = 92/328 (28%), Positives = 174/328 (53%), Gaps = 40/328 (12%)
Query: 90 EDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQ-QVA 148
+D E+G ++ I+D + IK+ ++V + + +++ I ++ ++ Q +
Sbjct: 221 KDNELG----QLANAIDDFIAKVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHNIHNQQS 276
Query: 149 EAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGR 208
E N V+I Q Q++I +T+++ + K+ V++ E+ +A +RE
Sbjct: 277 EISNSVAIGHQ-SQDSIKAVTESIYAASESLKQAVTSSEDSKAQLREA------------ 323
Query: 209 QAADQIEEISRMMEKIEETVRGVAEMGKSIENITNV---ISSISEQTNLLALNAAIEAAR 265
Q +Q +++EK E T + E+ +E +T++ I SI+EQTNLLALNAAIEAAR
Sbjct: 324 QTQNQ-----QLVEKAEITTKTATELNTQVEKVTDILQMIRSIAEQTNLLALNAAIEAAR 378
Query: 266 AGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIG----DKIG---ESVEVTQQGAEV 318
AGE G+GFAVVADE+R LAE++ + + L+ Q+ + IG ES+ +
Sbjct: 379 AGENGRGFAVVADEVRHLAEKTSASTNQVETLLTQLSGYSRNLIGYMEESLVAARNCVAA 438
Query: 319 VKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEET 378
+++ + ++ +++ + Q A + V SE + +++ E++ E LR L+N A E
Sbjct: 439 IESGSNLVDKAIIDVNQ-ANSTNQNAVHDSEQQNRLV---EQLLEQLRLLDN---HAREL 491
Query: 379 TAAAEEVSAAAEEQSSALQELRESVKEL 406
+ +S ++E + + R ++K+L
Sbjct: 492 LTDSATISEHSKELLRSASQTRSNLKQL 519
>pir||D75590 methyl-accepting chemotaxis protein - Deinococcus radiodurans
(strain R1) >gi|6460728|gb|AAF12433.1|AE001863_58
(AE001863) methyl-accepting chemotaxis protein
[Deinococcus radiodurans]
Length = 743
Score = 118 bits (294), Expect = 8e-26
Identities = 89/350 (25%), Positives = 171/350 (48%), Gaps = 15/350 (4%)
Query: 54 KVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSIS 113
+++V + EE + Q+Q I E + + IA GDL+ K + V I + ++
Sbjct: 403 QLRVDQEREEAQ-QMQSNIGEFLDVTMDIADGDLTRRGKVTDDVLGNVVDSINLMVGELA 461
Query: 114 QLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMR 173
+ ++ A+ V + M Q+ Q AE ++ A+R E ++ D R
Sbjct: 462 DTLREVQGASQSVNQGSAQMLTTTAQIGQGSQLTAEQSRRL---AERAAEISLRIQDLAR 518
Query: 174 YIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAE 233
D + A+ ++ Q +++G + + + I + + +T++ ++E
Sbjct: 519 SAQDSA-----------AAAQQALQTSQQGQQAVQGTLQGMAAIREGTQDVAQTMQALSE 567
Query: 234 MGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAED 293
+ I+ I + I+ IS QTNLL+L+A+IEAA AGEAG FAVVADE+R+LAE++ +A
Sbjct: 568 RSEQIQGIVDTITQISSQTNLLSLHASIEAAGAGEAGSRFAVVADEVRQLAEQTNEATGR 627
Query: 294 IRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREK 353
+ LI + I + + Q A V+ V +E+ S L ++ ++ + A ++ +
Sbjct: 628 VAALITTLQSDIAQVRQGVQSSAAQVEKGYRVAEEAGSRLQELGDIAQRSAQLAGQMSDV 687
Query: 354 VIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESV 403
+ IE+ + ++++AA AE + + AAE+ + +L +S+
Sbjct: 688 SGAQARDIEQLGQGVQDIAALAEGAQQSVQRGRGAAEQLRALATQLDQSL 737
>pir||F83280 probable chemotaxis transducer PA2920 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949014|gb|AAG06308.1|AE004718_5 (AE004718) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 545
Score = 118 bits (294), Expect = 8e-26
Identities = 92/351 (26%), Positives = 166/351 (47%), Gaps = 38/351 (10%)
Query: 70 REIDEIVKILDRIAQGD------LSVEDK-EIGGMGAKVRQGIEDLR---KSISQLVLNI 119
R + +++ L+ IA GD L V + E G +G+ ++ L+ + + ++ +
Sbjct: 218 RPLQRLLQRLEEIANGDGDLRVRLEVTSRDEPGRLGSAFNAFLDKLQPLIREVGRVTGEV 277
Query: 120 KNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDIS 179
++A + T I SV QV+ A Q+S +H+++
Sbjct: 278 ADSAGSLAGMTAANDRLINSEHASVDQVSTAATQMSSA-----------------VHEVA 320
Query: 180 KETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIE 239
+ S + + + R+ A+EG + I ++++ +E E+++ +A+ SI+
Sbjct: 321 RNAQSAAQVADDARRQ----AREGANVVEATIEVIRQLAQEVESSSESIQQLAQETASID 376
Query: 240 NITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIK 299
+ VI I+EQTNLLALNAAIEAARAGE G+GFAVVADE+R LA ++ + +DI+ I+
Sbjct: 377 AVLTVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTKDIQARIE 436
Query: 300 QIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGE 359
++ + +V Q G+ + S E L + + + + Q
Sbjct: 437 RLQAGVQNAVRAMQSGSLKARDSVERAAGVDGVLAATGDAV-------GRINDLAAQIAS 489
Query: 360 KIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLV 410
EE R ++ +A + E + + + +E+ + A + L E EL RLV
Sbjct: 490 ACEEQSRVIDEIARNISEVRELSAQAAEHSEQGTGASRRLSELSSELARLV 540
>pir||E83041 probable chemotaxis transducer PA4844 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951114|gb|AAG08229.1|AE004897_7 (AE004897) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 657
Score = 118 bits (294), Expect = 8e-26
Identities = 93/370 (25%), Positives = 171/370 (46%), Gaps = 34/370 (9%)
Query: 57 VSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLV 116
++ I+ +++L R + ++V L A GD S +R EDLR
Sbjct: 318 IALAIDSLQRRLARVLGQLVPALSAWADGDFS--------RPISLRTRTEDLR------- 362
Query: 117 LNIKNAAIDVRNHTK----VMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTM 172
N++++ +R+ + EQVA S Q +AE + + +R+ + ++ D +
Sbjct: 363 -NLEDSLNRLRSFLAELVGAIHRRAEQVAGSSQTLAEVSSGLHAGVERQAGDTGQIRDAL 421
Query: 173 RYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVA 232
+ ++ + + R Q + G ++ + E+ ++ +++ +A
Sbjct: 422 GDMEAAIQQVAGDASQTADASRSAGQAVEHGQRVIGESLGGLRELVDEVQGNAQSIERLA 481
Query: 233 EMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAE 292
E +I ++ VI SI+EQTNLLALNAAIEAARAG+ G+GFAVVA+E+R LA+ + A E
Sbjct: 482 EESATIGSVLTVIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVAEEVRSLAQRTAGATE 541
Query: 293 DIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELRE 352
+I++LI ++ +SVE + E + + E + L +V + + V A + E
Sbjct: 542 EIQQLIGRLQQAARQSVEAMRSQVEHAERTAEQAGAAEGALDEVVAAIHTIGVMAERIAE 601
Query: 353 KVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDV 412
Q+ + + E + +E + A E + RE ++L +L
Sbjct: 602 GSTQQSQAV--------------GEIRSHSERIHALGGENLRLIGHSREQGEQLRQLGGD 647
Query: 413 LMEQISKFKL 422
L + F+L
Sbjct: 648 LRTTVQAFRL 657
>gb|AAG19751.1| (AE005061) Htr12 transducer; Htr12 [Halobacterium sp. NRC-1]
Length = 420
Score = 118 bits (294), Expect = 8e-26
Identities = 83/307 (27%), Positives = 152/307 (49%), Gaps = 16/307 (5%)
Query: 116 VLNIKNAAIDVRNHTK----VMKENIEQVADSVQQVAEAINQVSIE-AQREQENISKMTD 170
VL I ++ R K + +++E ++ V E + S E + E S + D
Sbjct: 113 VLTIVTDVVEQRERVKRAQRTLTDDVEAAVTELRDVGEGVADASQEISDLAAEQASDVND 172
Query: 171 TMRYIHDISKETVSTMEEFEASMREMAQL---AKEGGEKGRQAADQI----EEISRMMEK 223
+ D+S +T++E AS E+ Q A+E E R+AA+++ E + +
Sbjct: 173 IAADVSDLS----ATIQEVAASADEVRQRSTEARERAEASREAAERVLAAVEAFADAGDT 228
Query: 224 IEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKL 283
+ + E I+ + +VI+ I++QTN+LALNA IEAARAGE G GF+VVA+E++ L
Sbjct: 229 VSVNTASLREHLDEIDQLVDVINDIADQTNMLALNANIEAARAGEDGSGFSVVAEEVKDL 288
Query: 284 AEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEM 343
AE+S++ DI L+ I E+ + + V ++ +E V +A + E
Sbjct: 289 AEQSQQQVGDIEALVADIEADSEETAKSVAAANDQVSSARTAAEELVENQDAIASAIGET 348
Query: 344 EVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESV 403
+E+ ++ E E ++ + A+ +V+AA E+Q+ L ++ +SV
Sbjct: 349 AEGIAEIAAATDEQAETAAEISAAIDTVVERADAVADETADVAAANEQQTDMLSDIEQSV 408
Query: 404 KELDRLV 410
++ +R++
Sbjct: 409 RDAERVL 415
>emb|CAB99193.1| (AJ293587) hypothetical protein [Pseudomonas putida]
Length = 326
Score = 118 bits (293), Expect = 1e-25
Identities = 83/323 (25%), Positives = 159/323 (48%), Gaps = 44/323 (13%)
Query: 106 EDLRKSISQLV---LNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQ 162
++LRK+I Q+ + AA+++ T + + Q + ++Q A A+N++S
Sbjct: 42 KNLRKTIGQISDSSTQLSGAAVEMTAITDAASKTLRQQKNEIEQAATAVNEMSAA----- 96
Query: 163 ENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMME 222
+ ++++ ST E + R+ + AK G + + I E++ +E
Sbjct: 97 ------------VEEMAQNATSTSE----AARQSSDFAKLGNQCVNETLKAISELTGQVE 140
Query: 223 KIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRK 282
E ++ +A + I + +VI +I++QTNLLALNAAIEAARAGE G+GFAVVAD+IR
Sbjct: 141 LTAEQIQHLAGQTQDISKVLSVIRAIAQQTNLLALNAAIEAARAGEQGRGFAVVADQIRA 200
Query: 283 LAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEV---VKTSTEVIKESVSYLTQVAEM 339
LA ++ + ++I E+I I + +V Q A + K + E S+ +T +
Sbjct: 201 LAHLTQGSTKEIEEMITSIQQQSSLAVVSMQFSATLAHETKKAAEKAGRSLESITNAVRL 260
Query: 340 MEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQEL 399
+++ ++ + E+ +++ L + +L+ ++ T +
Sbjct: 261 IDDRNLQIATASEEQASVAREVDSNLTSIRHLSMQSDNGT-----------------HQT 303
Query: 400 RESVKELDRLVDVLMEQISKFKL 422
++ +EL RL VL + + +FK+
Sbjct: 304 LQASEELSRLAIVLNQAVLRFKV 326
>gb|AAG19428.1| (AE005036) Htr13 transducer; Htr13 [Halobacterium sp. NRC-1]
Length = 423
Score = 118 bits (292), Expect = 1e-25
Identities = 87/285 (30%), Positives = 142/285 (49%), Gaps = 21/285 (7%)
Query: 138 EQVADSVQQVAEAI------NQVSIEAQREQENISKMTDTMRY-IHDISKETVSTMEEFE 190
E AD VAE I NQ E R S TD ++ I DIS S +E+
Sbjct: 144 EATADEAAAVAELIERAREMNQNMEEIDRLAAQQSDNTDNLKAEISDIS----SAIEQIA 199
Query: 191 ASMREM-------AQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITN 243
AS E+ LA +G E+ +Q+E I + ++ + + ++I++I
Sbjct: 200 ASATEVNDRSDEAQSLATDGYERAVAVVEQVEAIHDGVTEVRHQTATLQDHTEAIDDIVE 259
Query: 244 VISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGD 303
VI+ I++QTNLLALNA+IEAARA G+GFAVVADE++ LAEESK AE+I E ++ I
Sbjct: 260 VINDIADQTNLLALNASIEAARADAGGEGFAVVADEVKSLAEESKTQAEEIEERVENIQV 319
Query: 304 KIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEE 363
+ + + + + S E S+ ++ +++ + E++ ++ E EE
Sbjct: 320 ETRNAADTLVELETETEDSLEASTSSLDTFEEIKDLVTGVSTSLDEIKSGTERQTESSEE 379
Query: 364 GLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDR 408
++ A A+ ++EV++ A+ + LQ+L E D+
Sbjct: 380 LTMMIDEAARKAD---TISDEVASMADANHAQLQKLEAYQSESDQ 421
>gb|AAB50497.1| (U30319) DcrH [Desulfovibrio vulgaris]
Length = 959
Score = 117 bits (291), Expect = 2e-25
Identities = 90/376 (23%), Positives = 170/376 (44%), Gaps = 32/376 (8%)
Query: 68 LQREIDEIVKILDRIAQGDLSVEDK-----EIGGMGAKVRQGIEDLRKSISQLVLNIKNA 122
L R + + +A G+L + E+ M + +++LR I + A
Sbjct: 447 LSRPLQRLQVYAGDVAAGNLDARPEGQYPAELDAMRHSIESMVQNLRMRIHEADAKRMEA 506
Query: 123 AIDVRNHT------------KVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTD 170
A + H K + E + + V+E +++ + + I++ +
Sbjct: 507 ADSAQAHRPLDKARASETRIKGLMERMTGGGSKARSVSEHVSRSINDLTAQVHTITQAVE 566
Query: 171 TMRYIHDISKETVSTMEEFEASMR------EMAQLAKEGGEKGRQAADQIEEISRMMEKI 224
T R+ D + + + TM + + E A L++ G + + + I ++ E+I
Sbjct: 567 TQRHRMDDTAQAMDTMRTMVSDVADNWRAAEQADLSRGHGSRAPREWAAVASIGQVRERI 626
Query: 225 EETVRGVAEMGK---SIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIR 281
E +A +G+ SI + +VIS I++QTNLLALNAAIEAARAG+AG+GFAVVADE+R
Sbjct: 627 ERLNTAMARLGEEADSIGKVMSVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVR 686
Query: 282 KLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTE------VIKESVSYLTQ 335
KLAE++ +A ++ + +I +++ + S + V+ + VS + +
Sbjct: 687 KLAEKTMQATGEVGSAVTRIQTHTRDNIAAVETAMRERTASADATASGRVMDDIVSRVDE 746
Query: 336 VAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSA 395
A M++ + + + G +EE + AAS E++ + +E S
Sbjct: 747 TAGMVQSIAAASDQQAAAATMVGRNVEEVNAIAGDTAASMSHFAGTLEDIFSQVQELFSM 806
Query: 396 LQELRESVKELDRLVD 411
++ + + + L D
Sbjct: 807 IEVISTGEEGVSVLAD 822
>pir||E82481 methyl-accepting chemotaxis protein VCA0268 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657665|gb|AAF96179.1| (AE004366) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 643
Score = 117 bits (291), Expect = 2e-25
Identities = 98/386 (25%), Positives = 187/386 (48%), Gaps = 47/386 (12%)
Query: 21 TVIPAVFNSIPGAIVGGIVGVGIASYINYKGETKVKVSADIEEYEKQLQREIDEIVKILD 80
T + V ++ AI GIV +GI+ + + I + K L R V +LD
Sbjct: 279 TALADVDVAVANAITTGIVLIGISVGV---------IIFIINQIYKPLLRLK---VAVLD 326
Query: 81 RIAQGDLSVEDK-EIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQ 139
+AQG + + E+ G + + + ++ N++N + + + T+++ +IEQ
Sbjct: 327 -LAQGSGDLTRRLEVNG-----NDDLAQISEGFNRFSGNLQNMMLQISDATQIISSSIEQ 380
Query: 140 VADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQL 199
++ + ++ + + S E + I++M+++ R +++ + + EA+ +E
Sbjct: 381 LSQTAKENEQMLISHSSETDQVVTAITQMSESAR---TVAESVTQSNQITEAASKE---- 433
Query: 200 AKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNA 259
A++ A + + +E + E++ + I + +VI +ISEQTNLLALNA
Sbjct: 434 AQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISEVLSVIGAISEQTNLLALNA 493
Query: 260 AIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQI---GDKIGESVEVTQQGA 316
AIEAARAGE G+GFAVVADE+R LA ++ + +I +++ ++ D + ++E T+Q
Sbjct: 494 AIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLEGTDSVVGAMERTKQQC 553
Query: 317 EVVKTSTEVIKESVSYL-----------TQVAEMMEEMEVKASELREKVIQEGEKIEEGL 365
+ T + S++ + TQ+A E+ A+EL ++ E
Sbjct: 554 QTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAELSRNMLSIRE------ 607
Query: 366 RFLENLAASAEETTAAAEEVSAAAEE 391
+E+L S +T A E +S + E
Sbjct: 608 -IVESLVVSGRQTVGATESLSHSNHE 632
>pir||F82382 methyl-accepting chemotaxis protein VCA1069 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658515|gb|AAF96963.1| (AE004432) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 639
Score = 117 bits (291), Expect = 2e-25
Identities = 95/359 (26%), Positives = 174/359 (48%), Gaps = 39/359 (10%)
Query: 71 EIDEIVKILDRIAQGD------LSVEDK-EIGGMGAKVRQGIEDLRKSISQLVLNIKNAA 123
E+ I L IA+GD L V + E+G + K + ++ L Q+V N++ +
Sbjct: 313 ELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKFVDRLH----QMVKNVREVS 368
Query: 124 IDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETV 183
+ + Q AD A + Q S + +Q+ I+ + + + + E
Sbjct: 369 VA-----------LTQGAD---HAAASATQASKRIRTQQDEITMVATAVTEMASATAEIA 414
Query: 184 STMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITN 243
S E + + QL ++G + +Q+ I+++++ + + + I I +
Sbjct: 415 SNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILS 474
Query: 244 VISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGD 303
I I+EQTNLLALNAAIEAARAGE G+GFAVVADE+R L++ + + E+I+ I +
Sbjct: 475 TIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQK 534
Query: 304 KIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEE 363
+V V + ++V+TS + ++ + L ++E ++++ S++ ++ E E+
Sbjct: 535 VTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQI----SDMATQIASAAE--EQ 588
Query: 364 GLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKL 422
L + A T + EVS E++ Q+ + K L + L ++IS+FKL
Sbjct: 589 SL-----VTADINVNTESVREVSDQLAEEA---QQSVQQAKSLHAMAQELNKEISRFKL 639
>pir||T44276 transducer protein htrXII [similarity] - Halobacterium salinarum
>gi|4104487|gb|AAD02053.1| (AF036232) soluble transducer
HtrXII [Halobacterium salinarum]
Length = 419
Score = 117 bits (290), Expect = 2e-25
Identities = 84/307 (27%), Positives = 153/307 (49%), Gaps = 17/307 (5%)
Query: 116 VLNIKNAAIDVRNHTK----VMKENIEQVADSVQQVAEAINQVSIE-AQREQENISKMTD 170
VL I ++ R K + +++E ++ V E + S E + E S + D
Sbjct: 113 VLTIVTDVVEQRERVKRAQRTLTDDVEAAVTELRDVGEGVADASQEISDLAAEQASDVND 172
Query: 171 TMRYIHDISKETVSTMEEFEASMREMAQL---AKEGGEKGRQAADQI----EEISRMMEK 223
+ D+S +T++E AS E+ Q A+E E R+AA+++ E + +
Sbjct: 173 IAADVSDLS----ATIQEVAASADEVRQRSTEARERAEASREAAERVLAAVEAFADAGDT 228
Query: 224 IEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKL 283
+ + E I+ + +VI+ I++QTN+LALNA IEAARAGE G GF+VVA+E++ L
Sbjct: 229 VSVNTASLREHLDEIDQLVDVINDIADQTNMLALNANIEAARAGEDGSGFSVVAEEVKDL 288
Query: 284 AEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEM 343
AE+S++ DI L+ I E+ + + V ++ +E V +A + E
Sbjct: 289 AEQSQQQVGDIEALVADIEADSEETAKSVAAANDQVSSARTAAEELVENQDAIASAIGET 348
Query: 344 EVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESV 403
+E+ ++ E E R ++ + A+ +V+AA E+Q+ L ++ +SV
Sbjct: 349 AEGIAEIAAATDEQAETAAEICR-VDTVVERADAVADETADVAAANEQQTDMLSDIEQSV 407
Query: 404 KELDRLV 410
++ +R++
Sbjct: 408 RDAERVL 414
>pir||G83313 probable chemotaxis transducer PA2652 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948722|gb|AAG06040.1|AE004694_3 (AE004694) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 561
Score = 117 bits (290), Expect = 2e-25
Identities = 92/386 (23%), Positives = 183/386 (46%), Gaps = 50/386 (12%)
Query: 43 IASYINYKGETKVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGA--- 99
I S IN G V A + E ++ + I ++ + IA G L V IG A
Sbjct: 179 IGSAINLDG-----VEAQLVEIKQDIDERIGTLIASIVGIA-GVLLVVLLVIGLAVANAM 232
Query: 100 -----KVRQGIEDLRKSISQLVLNIKNAAID--------VRNHTKVMKENIEQVADSVQQ 146
++RQ ++D+ L + + D + + + Q+A
Sbjct: 233 LRPLHQIRQNLDDIAAGEGDLTRRLPVTSYDELGELAGSFNRFVEKIHGLVRQIAGMTGD 292
Query: 147 VAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEK 206
+ + + Q+S +A+R ++ + + + E + E S + A+ A++ +
Sbjct: 293 LKQLVEQMSAQAERSEQAMERQRHETDQVATAINEMSAAAHEVAQSAQRAAEAAQQTDHE 352
Query: 207 GRQAA----DQIEEISRMMEKIEETVRGVAEMGKSIENITNV---ISSISEQTNLLALNA 259
G+ A IE I ++++I ++ + + + +++I +V I SI+EQTNLLALNA
Sbjct: 353 GQAAKRVVDGSIERIHALVDEIRDSGTSLDSLQQDVQSIVSVLGVIRSIAEQTNLLALNA 412
Query: 260 AIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVV 319
AIEAARAGEAG+GFAVVADE+R LA ++++ ++I+ +I ++ +V+ ++ E
Sbjct: 413 AIEAARAGEAGRGFAVVADEVRALASRTQQSTQEIQGMIDRLQQGTNAAVDAMRRSGEAG 472
Query: 320 KTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETT 379
+ ++ ++ L +A+++ + ++ +A++AEE T
Sbjct: 473 EGTSNQANQAGDSLDAIAQLIATINAMNAQ---------------------IASAAEEQT 511
Query: 380 AAAEEVSAAAEEQSSALQELRESVKE 405
A AEE++ + + + A+ + + ++
Sbjct: 512 AVAEEINRSVHQIAGAVDSVADEAQQ 537
>pir||S72163 methyl-accepting chemotaxis protein mcpA - Rhizobium leguminosarum
bv. viciae plasmid >gi|780656|gb|AAC44311.1| (U23040)
chemoreceptor protein [Rhizobium leguminosarum bv.
viciae]
Length = 639
Score = 116 bits (289), Expect = 3e-25
Identities = 94/362 (25%), Positives = 171/362 (46%), Gaps = 46/362 (12%)
Query: 59 ADIEEYEKQLQREIDE----IVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQ 114
A + E E+Q R++ E + + L +A G+L + + K + E LR + +
Sbjct: 283 ARLAETERQRARDMAEATSGLAEGLRHLADGNL------VFSLDDKFAEDFEPLRANFNA 336
Query: 115 LVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRY 174
V + + V N T+ + + ++++ S Q ++ +R + + + T
Sbjct: 337 AVAQLAESLRAVSNATESIDDGAQEISLSAQDLS----------RRTEHQAASLEQTAAA 386
Query: 175 IHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEM 234
+ I++ S+ + E +A E + R + + + M++IE +
Sbjct: 387 LDQITQNVASSSKR----TAEARHVAIEANKSARHSGEVVSSAVAAMQRIERS------- 435
Query: 235 GKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDI 294
I +I VI I+ QTNLLALNA +EAAR+GEAGKGFAVVA E+R+LA+ S AA++I
Sbjct: 436 SSRISSIVGVIDEIAFQTNLLALNAGVEAARSGEAGKGFAVVAQEVRELAQRSAHAAKEI 495
Query: 295 RELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKV 354
++LI SV+ G ++V+ + E +K V + + ++ + ++E +
Sbjct: 496 KDLIL-------NSVDEVSSGVKLVRDTGEALKIIVDQIVLINTQLDAVTAASNEQSATL 548
Query: 355 IQEGEKIEEGLRFLENLAASAEETTAAAEEVS--------AAAEEQSSALQELRESVKEL 406
+ + + + + AA +EE+TAA+ ++ AE Q A +L SV
Sbjct: 549 FEVNRTVNQMDQVTQQNAAMSEESTAASTALAIEVKQLRGIVAEFQIDAGDKLHGSVILF 608
Query: 407 DR 408
DR
Sbjct: 609 DR 610
>emb|CAA70726.1| (Y09534) methyl-accepting chemotaxis proteins [Rhizobium
leguminosarum]
Length = 639
Score = 116 bits (289), Expect = 3e-25
Identities = 94/362 (25%), Positives = 171/362 (46%), Gaps = 46/362 (12%)
Query: 59 ADIEEYEKQLQREIDE----IVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQ 114
A + E E+Q R++ E + + L +A G+L + + K + E LR + +
Sbjct: 283 ARLAETERQRARDMAEATSGLAEGLRHLADGNL------VFSLDDKFAEDFEPLRANFNA 336
Query: 115 LVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRY 174
V + + V N T+ + + ++++ S Q ++ +R + + + T
Sbjct: 337 AVAQLAESLRAVSNATESIDDGAQEISLSAQDLS----------RRTEHQAASLEQTAAA 386
Query: 175 IHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEM 234
+ I++ S+ + E +A E + R + + + M++IE +
Sbjct: 387 LDQITQNVASSSKR----TAEARHVAIEANKSARHSGEVVSSAVAAMQRIERS------- 435
Query: 235 GKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDI 294
I +I VI I+ QTNLLALNA +EAAR+GEAGKGFAVVA E+R+LA+ S AA++I
Sbjct: 436 SSRISSIVGVIDEIAFQTNLLALNAGVEAARSGEAGKGFAVVAQEVRELAQRSAHAAKEI 495
Query: 295 RELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKV 354
++LI SV+ G ++V+ + E +K V + + ++ + ++E +
Sbjct: 496 KDLIL-------NSVDEVSSGVKLVRDTGEALKIIVDQIVLINTQLDAVTAASNEQSATL 548
Query: 355 IQEGEKIEEGLRFLENLAASAEETTAAAEEVS--------AAAEEQSSALQELRESVKEL 406
+ + + + + AA +EE+TAA+ ++ AE Q A +L SV
Sbjct: 549 FEVNRTVNQMDQVTQQNAAMSEESTAASTALAIEVKQLRGIVAEFQIDAGDKLHGSVILF 608
Query: 407 DR 408
DR
Sbjct: 609 DR 610
>pir||C82206 methyl-accepting chemotaxis protein VC1403 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655898|gb|AAF94560.1| (AE004218) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 641
Score = 116 bits (289), Expect = 3e-25
Identities = 89/337 (26%), Positives = 169/337 (49%), Gaps = 15/337 (4%)
Query: 106 EDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENI 165
+DLR+ L + AA V + T + +E+ + ++ Q+ ++ Q+++ A+
Sbjct: 32 DDLRRQARTLARK-QQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSSAT 90
Query: 166 SKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIE 225
+ + +++ E + + S + + +L ++ + + + + + E+
Sbjct: 91 KQSETAVSQMNNFINEQATYATQ---SKQILTKLEQDIVDVANKINEMVSNVQTSSERQN 147
Query: 226 ETVRGVAEMGKSIENITNVISS---ISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRK 282
++V+ + E+ + I + + I++QTNLLALNAAIEA RAG+ GKGFAVVAD +R
Sbjct: 148 DSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRT 207
Query: 283 LAEESKKAAEDIRELIKQI---GDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEM 339
LAE+++K A +I LIK I + + V+ + Q AE V+ + LT +
Sbjct: 208 LAEKAEKNAANIESLIKDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQ---LTLIRNE 264
Query: 340 MEEMEVKASELREKVIQE-GEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQE 398
M ++ VK SE+ K E L+ E+++ +A+E +AA EE + ++Q AL
Sbjct: 265 MVDL-VKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALDG 323
Query: 399 LRESVKELDRLVDVLMEQISKFKLSKDHESQVKKITA 435
+ + LD L D L K S++ + ++++A
Sbjct: 324 AVTAAQSLDELTDELRTSTDIVKSSEEVAAAAEELSA 360
Score = 112 bits (278), Expect = 6e-24
Identities = 85/335 (25%), Positives = 173/335 (51%), Gaps = 18/335 (5%)
Query: 88 SVEDKEIGGMGA-KVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQ 146
S++ ++I GA Q +++L + + +I ++ +V + + IE++ S +
Sbjct: 313 SLDQQQIALDGAVTAAQSLDELTDEL-RTSTDIVKSSEEVAAAAEELSAGIEEINRSSNE 371
Query: 147 VAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEK 206
+ A+NQ+S AQ +++ ++ I ++ E E+S++ ++ G E+
Sbjct: 372 IMGALNQISSGAQHMAKSVETGITSLTQIEQGAR---LGKERAESSLKACEKMLT-GIEE 427
Query: 207 GRQAADQI-----EEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAI 261
+ D++ E E + E + + + + I+ I + IS++S QT +LA+N A+
Sbjct: 428 NKTTVDEMILAITESTKAATENLNE-MANIERISRQIDKIVDGISNVSIQTAMLAVNGAV 486
Query: 262 EAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKT 321
EAARAGE GKGFAVV+ +I+ LA ++ + AE I++ +K I ++I V + A+++ T
Sbjct: 487 EAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQIN---IVRKDLADILST 543
Query: 322 STEVIKE---SVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEET 378
E ++ ++ L V M ++ + + + E I + ++ +A +AEE+
Sbjct: 544 VMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGGIERSIADARAGMQQIATAAEES 603
Query: 379 TAAAEEVSAAAEEQSSALQELRESVKELDRLVDVL 413
+ A E + AA +QSS+ EL +++ + + D L
Sbjct: 604 SHATGEAATAARQQSSSTSELASAIENIAAVADEL 638
>pir||C83184 probable chemotaxis transducer PA3708 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949872|gb|AAG07095.1|AE004789_15 (AE004789)
probable chemotaxis transducer [Pseudomonas aeruginosa]
Length = 542
Score = 116 bits (289), Expect = 3e-25
Identities = 86/357 (24%), Positives = 168/357 (46%), Gaps = 27/357 (7%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAID 125
+ + + I +IV+ LD +A GDL+ A++ G D + A +
Sbjct: 213 RAITQPIQKIVRSLDLMAGGDLT----------ARLNLGRRD---EFGAIETGFNGMAEE 259
Query: 126 VRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVST 185
++ + + QV SV ++A Q A +++ T R I S++ V T
Sbjct: 260 LKGLVSQAQRSSVQVTTSVTEIAATSKQQQATATETAATTTEIGATSREIAATSRDLVRT 319
Query: 186 MEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVI 245
M E + + + LA G + + + + + + + + E +I + I
Sbjct: 320 MSEVSGAAEQTSTLAGSGQLGLARMEETMHHVMGAADLVNAKLAILNEKAGNINQVVTTI 379
Query: 246 SSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKI 305
+++QTNLL+LNAAIEA +AGE G+GFAVVA E+R+LA+++ A DI +++++I +
Sbjct: 380 VKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEVRRLADQTAVATYDIEQMVREIQSAV 439
Query: 306 GESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGL 365
V + +E V+ + + L+Q+ + +V+A R +++ EG
Sbjct: 440 SAGVMGMDKFSEEVRRGIAEVGQVGEQLSQIIQ-----QVQALAPRVQMVNEG------- 487
Query: 366 RFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKL 422
++ A AE+ A ++ A + +L++ ++ EL+ + + L +S+FK+
Sbjct: 488 --MQAQATGAEQINQALVQLGEATGQTVESLRQASFAIDELNLVANGLRNGVSRFKV 542
>pir||A71978 methyl-accepting chemotaxis protein (MCP) - Helicobacter pylori
(strain J99) >gi|4154575|gb|AAD05650.1| (AE001446)
methyl-accepting chemotaxis protein (MCP) [Helicobacter
pylori J99]
Length = 673
Score = 115 bits (286), Expect = 7e-25
Identities = 82/328 (25%), Positives = 167/328 (50%), Gaps = 39/328 (11%)
Query: 51 GETKVKVSADIEEYEKQLQRE---IDEIVKILDRIAQGDLSVE------DKEIGGMGAKV 101
G+ + ++ +I + ++ +Q + I +++ + + GD + E +K++ + +
Sbjct: 364 GQMQASINENILKTQESIQADNKAIQNSIEVTNYVENGDFTQEIACVPKNKDLQALRNTI 423
Query: 102 RQGIEDLRKSISQLVLNIKNAA-----IDVRNHTKVMKENIEQVADSVQQVAEAINQVSI 156
I+ R I + ++ NA +D +H + K N+E+ +++ Q ++ + S+
Sbjct: 424 NSIIQYFRNQIGADIESLNNALEHYKNLDFTHHIQNPKANMEKALNTLGQEISSMLKASL 483
Query: 157 EAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEE 216
+ SK D + +++K T + E S++ Q +EE
Sbjct: 484 GFANALNHESK--DLKTCVDNLTK----TAHKQERSLKNTTQ--------------SLEE 523
Query: 217 ISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVV 276
I+ ++ I+ + + G+ I+++ ++I I++QTNLLALNAAIEAARAGE G+GFAVV
Sbjct: 524 ITNIITMIDSKSQEMISQGEDIKSVVDMIRDIADQTNLLALNAAIEAARAGEHGRGFAVV 583
Query: 277 ADEIRKLAEESKKAAEDIRE----LIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSY 332
ADE+RKLAE ++K+ +I L++ I D ES+++ +G E + S +++ V
Sbjct: 584 ADEVRKLAERTQKSLSEIEANINILVQSIADN-AESIKMQNKGVENIHNSINALQQDVQD 642
Query: 333 LTQVAEMMEEMEVKASELREKVIQEGEK 360
+A ++ K + + ++++ K
Sbjct: 643 NLTIANHSLQVSTKIDGISQDILEDVSK 670
>pir||B82110 methyl-accepting chemotaxis protein VC2161 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656714|gb|AAF95306.1| (AE004288) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 623
Score = 115 bits (286), Expect = 7e-25
Identities = 96/359 (26%), Positives = 170/359 (46%), Gaps = 46/359 (12%)
Query: 66 KQLQREIDEIVKILDRIA--QGDLSVE-----DKEIGGMGAKVRQGIEDLRKSISQLVLN 118
K L + + + + ++ +A QGDL+ D E + E L+K I L
Sbjct: 292 KVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETLQKRIQHL--- 348
Query: 119 IKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDI 178
K ++ + T+ Q V A S AQ+ QE + ++ M +
Sbjct: 349 -KGIGAEIMHGTE-------------QTVLGAHESASAMAQQLQE-LEQLATAMHEMAVT 393
Query: 179 SKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSI 238
+ E + + A+ E + +++G + I+ +S +E+ E V+G+ +I
Sbjct: 394 ATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNI 453
Query: 239 ENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELI 298
E I VI+ I++QTNLLALNAAIEAARAGE+G+GFAVVADE+R LA+ ++++ +IR +I
Sbjct: 454 ETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMI 513
Query: 299 KQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEG 358
+Q+ Q GA V + K + Q A++ A+E +++
Sbjct: 514 EQL-----------QSGASAVSAAMNESKYTADDAVQKAQL-------ANESLQRIRGAI 555
Query: 359 EKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQI 417
++I + +A++AEE + AEE++ + ++ +S K ++V E +
Sbjct: 556 QRISD---MNMQIASAAEEQSLVAEEINTNTVKIKDLSTQVADSAKSASMAMEVQTENV 611
>pir||D83109 probable chemotaxis transducer PA4290 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950511|gb|AAG07678.1|AE004845_4 (AE004845) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 538
Score = 115 bits (286), Expect = 7e-25
Identities = 90/315 (28%), Positives = 165/315 (51%), Gaps = 29/315 (9%)
Query: 118 NIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHD 177
+I A D+ ++T + VA SV+++AE + A++ + M T R +
Sbjct: 64 DIARLARDLSHNTSQNALSAAGVAFSVKRLAEKLQSQLDAAEQIVGSAEVMIHTERATSN 123
Query: 178 ISKETVSTMEEFEASMREMAQLAKEGGEKGRQA-ADQIEEISRMMEKI---EETVRGVAE 233
++++ + + A A+ G ++G+ A IE + R+ E++ E + + +
Sbjct: 124 LARQAM-----------DAATRARAGSDEGQVLLASTIERMHRLSERMGASREAIEALNQ 172
Query: 234 MGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAED 293
+ I+ +T VI I+ QTNLLALNAAIEAARAGE G+GFAVVA+E+R LA + +A E+
Sbjct: 173 RSEDIQRVTLVIQGIASQTNLLALNAAIEAARAGEHGRGFAVVAEEVRGLAGRTAEATEE 232
Query: 294 IRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREK 353
+ +++ +I + E VE +Q +E + ++ + L +AE+ +E + +E
Sbjct: 233 VGQMVAEIQRQTSEVVEQIRQLSEELGEGVGQVELTGRQLEGIAELAAGVESQITE---- 288
Query: 354 VIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVL 413
I +G +I L +L A+ E+ +A+EEQ+ L E+ +L+ +V+
Sbjct: 289 -IAQGAEINRSQ--LASLFAAVEQVRGDL----SASEEQT---LRLGEAASQLENQAEVI 338
Query: 414 MEQISKFKLSKDHES 428
E++++ L H+S
Sbjct: 339 SERLAEVSLDAYHQS 353
>sp|P35841|DCRA_DESVH CHEMORECEPTOR PROTEIN A >gi|282156|pir||A42275 chemoreceptor
protein A dcrA - Desulfovibrio vulgaris
>gi|145114|gb|AAA23379.1| (M81168) chemoreceptor protein
A [Desulfovibrio vulgaris]
Length = 668
Score = 115 bits (285), Expect = 9e-25
Identities = 85/311 (27%), Positives = 148/311 (47%), Gaps = 57/311 (18%)
Query: 125 DVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETV- 183
+ R + + N+ +VAD V VAE + + + + +++M + R + + ET
Sbjct: 375 EARRRIEEQRINLLRVADEVTGVAETLVRAA------EALVTRMGELERDATEAASETTQ 428
Query: 184 --STMEEFEASMREMAQLAKEGGEK----------GRQAADQIEEISRMMEKIEETVRGV 231
+ MEE ++ E+A+ A E G + A+ + E ++ ++ E+ +
Sbjct: 429 VATAMEEMNVTVTEVARNASSTAEMADCQWRAQSGGTEMANTVRETRQVAQRTEDLAESL 488
Query: 232 AEMGKSIENI---TNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESK 288
E+ + +NI VI+ I++QTNLLALNAAIEAARAG+AG+GFA+VADE+RKLAE++
Sbjct: 489 HELARRADNIGRVIEVINEIADQTNLLALNAAIEAARAGDAGRGFALVADEVRKLAEKTM 548
Query: 289 KAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKAS 348
A ++ + I I ++VEV + E +++EV A
Sbjct: 549 VATREVEQAIAAIQQGSNDAVEV------------------------MTETRQQVEVTAG 584
Query: 349 ELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDR 408
K E+ + L + AE ++ A+E+QSS E+ +V ++
Sbjct: 585 -----------KAEDTGKVLSGIVGRAESIADMVRNIATASEQQSSTSDEINRNVTRIND 633
Query: 409 LVDVLMEQISK 419
L + + K
Sbjct: 634 LTEASRDGCGK 644
>sp|P42257|PILJ_PSEAE PILJ PROTEIN >gi|540959|pir||S40037 pilJ protein - Pseudomonas
aeruginosa >gi|11352735|pir||C83594 twitching motility
protein PilJ PA0411 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|401797|gb|AAA25952.1| (L22036)
methyl-accepting chemotaxis protein (MCP) homologue
[Pseudomonas aeruginosa]
>gi|9946266|gb|AAG03800.1|AE004478_5 (AE004478)
twitching motility protein PilJ [Pseudomonas aeruginosa]
Length = 682
Score = 115 bits (285), Expect = 9e-25
Identities = 97/377 (25%), Positives = 174/377 (45%), Gaps = 45/377 (11%)
Query: 61 IEEYEKQLQREIDEIVKILDRIAQ---GDLSVE----DKEIGGMGAKVRQGIEDLRK--- 110
+ E ++ R I+++LD IA GDL+V + G + + I+ LR+
Sbjct: 339 LAETAEKNDRNQAAILRLLDEIADLADGDLTVAATVTEDFTGAIADSINYSIDQLRELVE 398
Query: 111 SISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTD 170
+I+Q + + AA + ++ + E E A + + AIN++++ + N S
Sbjct: 399 TINQTAVQVAAAAQETQSTAMHLAEASEHQAQEIAGASAAINEMAVSIDQVSANAS---- 454
Query: 171 TMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRG 230
E A +A +G E ++ I ++ + ++
Sbjct: 455 -----------------ESSAVAERSVAIANKGNEVVHNTITGMDNIREQIQDTSKRIKR 497
Query: 231 VAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKA 290
+ E + I +I ++I+ I++QTN+LALNAAI+A+ AG+AG+GFAVVADE+++LAE S A
Sbjct: 498 LGESSQEIGDIVSLINDIADQTNILALNAAIQASMAGDAGRGFAVVADEVQRLAERSSAA 557
Query: 291 AEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASEL 350
+ I L+K I E+V +Q T++EV++ + L Q A + E K S+
Sbjct: 558 TKQIEALVKTIQTDTNEAVISMEQ------TTSEVVRG--ARLAQDAGVALEEIEKVSKT 609
Query: 351 REKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLV 410
+IQ I R + A T +E+++ + S+ S+ L ++
Sbjct: 610 LAALIQ---NISNAARQQASSAGHISNTMNVIQEITS---QTSAGTTATARSIGNLAKMA 663
Query: 411 DVLMEQISKFKLSKDHE 427
+ +S FKL + E
Sbjct: 664 SEMRNSVSGFKLPEGVE 680
>pir||B64530 methyl-accepting chemotaxis transducer (tlpC) - Helicobacter pylori
(strain 26695) >gi|2313163|gb|AAD07152.1| (AE000530)
methyl-accepting chemotaxis transducer (tlpC)
[Helicobacter pylori 26695]
Length = 673
Score = 115 bits (285), Expect = 9e-25
Identities = 81/325 (24%), Positives = 166/325 (50%), Gaps = 39/325 (12%)
Query: 51 GETKVKVSADIEEYEKQLQRE---IDEIVKILDRIAQGDLSVE------DKEIGGMGAKV 101
G+ + ++ +I + ++ +Q + I +++ + + GD + E +K++ + +
Sbjct: 364 GQMQASINENILKTQESIQADNKAIQNSIEVTNYVENGDFTQEIACVPKNKDLQALRNTI 423
Query: 102 RQGIEDLRKSISQLVLNIKNAA-----IDVRNHTKVMKENIEQVADSVQQVAEAINQVSI 156
I+ R I + ++ NA +D +H + K N+E+ +++ Q ++ + S+
Sbjct: 424 NSIIQYFRNQIGANIESLNNALEHYKNLDFTHHIQNPKANMEKALNTLGQEISSMLKASL 483
Query: 157 EAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEE 216
+ SK D + +++K T + E S++ Q +EE
Sbjct: 484 GFANALNHESK--DLKTCVDNLTK----TAHKQERSLKNTTQ--------------SLEE 523
Query: 217 ISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVV 276
I+ ++ I+ + + G+ I+++ ++I I++QTNLLALNAAIEAARAGE G+GFAVV
Sbjct: 524 ITNIITTIDSKSQEMISQGEDIKSVVDMIRDIADQTNLLALNAAIEAARAGEHGRGFAVV 583
Query: 277 ADEIRKLAEESKKAAEDIRE----LIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSY 332
ADE+RKLAE ++K+ +I L++ I D ES+++ +G E + S +++ V
Sbjct: 584 ADEVRKLAERTQKSLSEIEANINILVQSIADN-AESIKMQNKGVENIHNSINALQQDVQD 642
Query: 333 LTQVAEMMEEMEVKASELREKVIQE 357
+A ++ K + + ++++
Sbjct: 643 NLTIANHSLQVSTKIDGISQDILED 667
>pir||H82402 methyl-accepting chemotaxis protein VCA0906 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658341|gb|AAF96803.1| (AE004418) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 578
Score = 115 bits (285), Expect = 9e-25
Identities = 98/370 (26%), Positives = 178/370 (47%), Gaps = 54/370 (14%)
Query: 66 KQLQREIDEIVKILDRIAQGD---LSVEDK---EIGGMGAKVRQGIEDLRKSISQLVLNI 119
+++ ID + +L R L VE+K E+ +G + + + +IS+
Sbjct: 248 RKIVTPIDRMASVLQRADDNSDLTLRVEEKSDDELAVIGRTINKVLGSYGSTISK----- 302
Query: 120 KNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDIS 179
I+ NHT I ++D+++ + + ++S + +E E + + M
Sbjct: 303 ----INQVNHT------ISSISDTIRSITDQNMKMSSQQDQELEMAATAMEEMTSALSSV 352
Query: 180 KETVSTMEEFEASMREMAQLAKEGGEKG-RQAADQIEEISRMMEKIEETVRGVAEMGKSI 238
++ + EE+ S + A +K+ EK R+ AD E +K E ++ +A ++
Sbjct: 353 SQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEF----QKTSEIIQQLATESNNV 408
Query: 239 ENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELI 298
N+ +VI +I+EQTNLLALNAAIEAARAGE G+GFAVVADE+R LA+ ++++ +I +I
Sbjct: 409 GNVLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMI 468
Query: 299 KQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEG 358
+ +K + ST+ I+ S A+ M+ E ++
Sbjct: 469 SMLQEK--------------AEMSTKTIRVS-------ADKMQSTRGNMGVANESLVAIQ 507
Query: 359 EKIEEGLRFLENLAASAEETTAAAEEVSA-------AAEEQSSALQELRESVKELDRLVD 411
+E + ++AA+ EE ++E+S+ + E + A+++L V +L R VD
Sbjct: 508 GSAKEIHKLNTSIAAATEEQLTVSDEISSNLSTIKTLSGEMNLAIKQLGPVVVDLQRNVD 567
Query: 412 VLMEQISKFK 421
L I+ +
Sbjct: 568 DLNSAIAHIR 577
>pir||D82393 methyl-accepting chemotaxis protein VCA0979 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658419|gb|AAF96875.1| (AE004424) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 294
Score = 115 bits (284), Expect = 1e-24
Identities = 80/319 (25%), Positives = 145/319 (45%), Gaps = 28/319 (8%)
Query: 103 QGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQ 162
QGI ++ +V+ + NA+ ++R + +E E+ + Q + ++ A
Sbjct: 3 QGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELN 62
Query: 163 ENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMME 222
+++ + T+ T E+ + R + E G A I + M
Sbjct: 63 HSVATVAQTVN----------ETAEQALNATRLTDNVVHEIGS----ATSDISNMCNEMV 108
Query: 223 KIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRK 282
++ + + + G+ I + NVI+ ISEQTNLLALNAAIEAARAGE G+GFAVVADE+R
Sbjct: 109 RVNQEMSKLLIEGEKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRN 168
Query: 283 LAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEE 342
LA ++ ++ E I+ I + E + +++ + E + S S + V +E
Sbjct: 169 LAVKTSQSTEQIKANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEM 228
Query: 343 MEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRES 402
+ ++ ++ + ++ I EE + A E S AA + E
Sbjct: 229 ISERSDQIHQSAAEQRTAI--------------EEISLAIVEASEAANSVYDRAAQNAEG 274
Query: 403 VKELDRLVDVLMEQISKFK 421
K + + ++ E ++KF+
Sbjct: 275 TKRVSAISALIAEHMAKFR 293
>pir||D82386 methyl-accepting chemotaxis protein VCA1034 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658478|gb|AAF96929.1| (AE004429) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 666
Score = 115 bits (284), Expect = 1e-24
Identities = 85/333 (25%), Positives = 160/333 (47%), Gaps = 29/333 (8%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVEDK-----EIGGMGAKVRQGIEDLRKSISQLVLNIK 120
+ +Q+ + +I L +A+GD++ E G + + + + +SQ+ +
Sbjct: 337 RSIQKPLQKINHELAYMARGDMTRRINYPTRCEFGALSRSIDILADKTGELLSQINAGSR 396
Query: 121 NAAIDVRNHTKVMKENIEQVADS---VQQVAEAINQVSIEAQREQENISKMTDTMRYIHD 177
+ + ++ + + +V + QVA AI ++ + A +
Sbjct: 397 HLVNEASRSAEISERAMARVQEQKSQTDQVAAAITELEVSAT-----------------E 439
Query: 178 ISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKS 237
+++ T +E + + E AK+G +K E+++ ME + E +
Sbjct: 440 VARSTDGAKDEVDRADAE----AKQGRQKVATTRRITEQLASDMESAVGITHKLGEFSNN 495
Query: 238 IENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIREL 297
I +I +VI I+EQTNLLALNAAIEAARAG+AG+GFAVVADE+R LA ++ + E+I+ +
Sbjct: 496 IGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALATRTQTSTEEIQHM 555
Query: 298 IKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQE 357
I+ + + + VEV + E + E +E S L +A+ M ++ A ++ ++
Sbjct: 556 IENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIKEMADQVAHAAQEQ 615
Query: 358 GEKIEEGLRFLENLAASAEETTAAAEEVSAAAE 390
+ + +A A ET A E ++++E
Sbjct: 616 IVVSQSVAHHVTGIAEVAHETEREARESASSSE 648
>pir||C83107 chemotactic transducer PctB PA4310 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950533|gb|AAG07698.1|AE004847_5 (AE004847)
chemotactic transducer PctB [Pseudomonas aeruginosa]
Length = 629
Score = 113 bits (281), Expect = 3e-24
Identities = 100/372 (26%), Positives = 174/372 (45%), Gaps = 59/372 (15%)
Query: 68 LQREIDEIVKILDRIAQG--DLS-----VEDKEIGGMGAKVRQGIEDLRKSISQLV---L 117
L + + ++ + + IAQG DL+ + E G + + +E + +SI ++
Sbjct: 300 LMQPLTDMGRAMQDIAQGEGDLTKRLKVTSNDEFGALAISFNRFVERIHESIREVAGTAR 359
Query: 118 NIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHD 177
+ + A V N + N ++ ++ VA AIN++ AQ N + D + D
Sbjct: 360 QLHDVAQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEIARNAA---DASHHASD 416
Query: 178 ISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKS 237
+ + + E ++R M +L+ E+IS IE +G+
Sbjct: 417 ANHQAEDGKQVVEQTIRAMNELS--------------EKISASCANIEALNSRTVNIGQI 462
Query: 238 IENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIREL 297
+E VI ISEQTNLLALNAAIEAARAGEAG+GFAVVADE+R LA ++++A+ I+++
Sbjct: 463 LE----VIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRAQESAQQIQKM 518
Query: 298 IKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQE 357
I+++ +IG Q+ + S ESV + E + + + +E+
Sbjct: 519 IEEL--QIG-----AQEAVSTMTESQRYSLESVEIANRAGERLSSVTGRIAEI------- 564
Query: 358 GEKIEEGLRFLENLAASAEETTAAAE-------EVSAAAEEQSSALQELRESVKELDRLV 410
+G+ +++A + EE TA + E++ +E LQ + EL+
Sbjct: 565 -----DGMN--QSVATATEEQTAVVDSLNMDITEINTLNQEGVENLQATLRACGELETQA 617
Query: 411 DVLMEQISKFKL 422
L + + FK+
Sbjct: 618 GRLRQLVDSFKI 629
>pir||H82143 methyl-accepting chemotaxis protein VC1898 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656431|gb|AAF95046.1| (AE004265) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 672
Score = 113 bits (281), Expect = 3e-24
Identities = 91/397 (22%), Positives = 185/397 (45%), Gaps = 54/397 (13%)
Query: 33 AIVGGIVGVGIASYINYKGETKVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVE-D 91
A+V GI V +A+ I Y ++ + I+K L+ + QG+++ +
Sbjct: 323 AVVIGIAVVLLATAIGY-------------HIAHSVREPVTRILKTLESLTQGNMTQRIE 369
Query: 92 KEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAI 151
+++ + I L ++ +++ + +A+ D+ S Q
Sbjct: 370 IRYNNEFSRLSRHINSLADNLHDILVKLNSASDDLT------------ATASTNQTTSLS 417
Query: 152 NQVSIEAQREQEN--ISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQ 209
Q + +QREQ + + MT+ + +++ +++ M Q + E GRQ
Sbjct: 418 AQNKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLA--------MVQQVETASESGRQ 469
Query: 210 A-ADQIEEISRMMEKIEETVRGVAEMGK---SIENITNVISSISEQTNLLALNAAIEAAR 265
+ I I ++ ++ E+V V ++ K I +I +VI +I+EQTNLLALNAAIEAAR
Sbjct: 470 IMSTNISTIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALNAAIEAAR 529
Query: 266 AGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEV 325
AGE G+GFAVVADE+R LA+ + ++ +I +I + + +V + + ++ S E
Sbjct: 530 AGEQGRGFAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQDMELSVEQ 589
Query: 326 IKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEV 385
+ S + ++ ++ E+ ++ + + ++ E + + E++
Sbjct: 590 ASHANSAMEEIQALIIEISHMSTHISQAAGEQNE--------------TTTSIARSIEDI 635
Query: 386 SAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKL 422
+ ++E A+ ++ ++ L L + E + +FKL
Sbjct: 636 NHISDESYQAMSQIAQTSANLTALANQQSELVHRFKL 672
>pir||F81297 probable MCP-type signal transduction protein Cj1506c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968931|emb|CAB73927.1| (AL139078) putative MCP-type
signal transduction protein [Campylobacter jejuni]
Length = 700
Score = 113 bits (280), Expect = 4e-24
Identities = 89/309 (28%), Positives = 160/309 (50%), Gaps = 21/309 (6%)
Query: 57 VSADIEEYEKQLQRE---IDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSIS 113
++ +IE+ + L+++ +DE V+ I +G+L+ + + + +L+ ++
Sbjct: 397 INENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITK-----NPINPQLVELKDVLN 451
Query: 114 QLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMR 173
+++ +++ N + ++ + + D +V A +V I + I KM +
Sbjct: 452 RMLDVLQSKIGSNMNEINRVFDSYKAL-DFSTEVFNAKGEVEITTNILGKEIKKM---LL 507
Query: 174 YIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAE 233
+ +K+ + EE + SM+++A + Q+A +EEI+ M+ + VA
Sbjct: 508 ASSNFAKDLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVAS 567
Query: 234 MGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAED 293
I+NI NVI I+EQTNLLALNAAIEAARAGE G+GFAVVADE+R+LAE + K+ +
Sbjct: 568 QADDIKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKSLSE 627
Query: 294 IR---ELIKQIGDKIGESVE-----VTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEV 345
I ++ Q +++ ESV+ +TQ + + T V KE+V + E+
Sbjct: 628 IEANINILVQSVNEVAESVKEQTAGITQINDAIAQLET-VTKENVEVANVTNNITNEVNQ 686
Query: 346 KASELREKV 354
A+ + E V
Sbjct: 687 IAAAILEDV 695
>sp|P55439|Y4FA_RHISN PROBABLE CHEMORECEPTOR Y4FA (METHYL-ACCEPTING CHEMOTAXIS PROTEIN)
>gi|2182384|gb|AAB91658.1| (AE000072) Y4fA [Rhizobium
sp. NGR234]
Length = 845
Score = 113 bits (279), Expect = 5e-24
Identities = 87/340 (25%), Positives = 156/340 (45%), Gaps = 29/340 (8%)
Query: 52 ETKVKVSADIEEYEKQLQREIDEIVKILDRIAQG-DLSVEDKEIGGMGAKVRQGIEDLRK 110
+ +V A+ E E + R EI +D +A G D + + + ++ LR
Sbjct: 509 QERVAAHAERERNEAEKLRRDQEIAFAVDALADGLDAMAKGRLTSTIETPFAPALDKLRT 568
Query: 111 SISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTD 170
+ V ++ +D+R + V++ + Q+A+ + ++ + EQ+ S
Sbjct: 569 DFNAAVAGLRQTLLDIRTTSSVIQGSGRQMAEGAK---------ALSGRTEQQAASL--- 616
Query: 171 TMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRG 230
+ET ++++E A++R A +A + + ++ +
Sbjct: 617 ---------EETAASVDEIVATIRRAGDQAANADNTVSKAKQDADRSTVVVGNATAAMGR 667
Query: 231 VAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKA 290
+ I +I VI I+ Q NLLALNA IEAARAGEAGKGFAVVA E+R+LA+ S A
Sbjct: 668 IEAASSHIGHIIEVIDDIAFQINLLALNAGIEAARAGEAGKGFAVVAQEVRELAQRSAGA 727
Query: 291 AEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASEL 350
A +I L IG S +GA +V + + + ++ +++ +E + + + E
Sbjct: 728 AREIAAL-------IGNSTAEVAKGAGLVSETGAALLDISKHILEISTQIEAIALSSREQ 780
Query: 351 REKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAE 390
+ + I + ++ AA AEET AA+ +S A+
Sbjct: 781 ASSIAEVNVAITRLDQLTQSNAAMAEETQAASWTLSGEAD 820
>pir||E83032 probable chemotaxis transducer PA4915 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951192|gb|AAG08300.1|AE004904_8 (AE004904) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 541
Score = 113 bits (279), Expect = 5e-24
Identities = 84/295 (28%), Positives = 138/295 (46%), Gaps = 28/295 (9%)
Query: 133 MKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEAS 192
+ E ++ + +++ NQVS A + + + + + ++ + AS
Sbjct: 266 LAETARKLTITSDEMSAISNQVSHVATSQGDQTDMVATAVHQMSMAVQDVARNAQAAAAS 325
Query: 193 MREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQT 252
A G D I+ +S M+ + + + I + VI +I++QT
Sbjct: 326 AESANSEAHTGTGLVHANLDAIQGLSVMVGEAGAVIDTLRNKTDEISTVLEVIQNIAQQT 385
Query: 253 NLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVT 312
NLLALNAAIEAARAGEAG+GFAVVADE+R LA + KA E IRE+I+ + +V V
Sbjct: 386 NLLALNAAIEAARAGEAGRGFAVVADEVRSLATNTHKATETIREMIEALQAGASSAVSVM 445
Query: 313 QQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLA 372
QQ E + S + E+ L +A+ +E + ++ ++
Sbjct: 446 QQSREQAQVSVQRAHEAGKALGLIAQAVEGIAQSNAQ---------------------IS 484
Query: 373 ASAEETTAAAEEVSAAAEEQSSALQELRE-------SVKELDRLVDVLMEQISKF 420
+ EE TA A EVS + ++++ E+ E S EL +L + L +QI +F
Sbjct: 485 TATEEQTATASEVSQNIDSLNASIGEVAEGAVKTSTSSVELAKLANGLEQQIQRF 539
>pir||E82431 methyl-accepting chemotaxis protein VCA0663 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658080|gb|AAF96564.1| (AE004396) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 587
Score = 112 bits (278), Expect = 6e-24
Identities = 85/349 (24%), Positives = 163/349 (46%), Gaps = 23/349 (6%)
Query: 61 IEEYEKQLQREIDEIVKILDRIAQG-DLSVEDKEIGGMG-AKVRQGIEDLRKSISQLVLN 118
I + + + ++ +++ ++ RIAQ D+S+ + G V + L L+ +
Sbjct: 249 IFQISRSINLQVSQLLLVIQRIAQSNDISLRAELKGNDEITAVARYFNSLLDKFEHLISS 308
Query: 119 IKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDI 178
+ + + + T M + +EQV + +E + ++ Q+ IS+++++ D
Sbjct: 309 SQTKSHQLYSSTSSMHDELEQVIEQFNVQSEHMGLMATSVQQMVSTISEISESTNIAVD- 367
Query: 179 SKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSI 238
+ + A+ A++G I+ +S ++K + ++ + + I
Sbjct: 368 -------------GVNQAARNAEQGRSVVVTTVKNIDLLSSTLQKSQHSIGSLNAFVEKI 414
Query: 239 ENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELI 298
++I I+EQTNLLALNAAIEAARAGE G+GFAVVADE+R LA + ++ E+I ++
Sbjct: 415 GGAVSIIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTHQSTEEITRVV 474
Query: 299 KQIGDKIGESVE----VTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREK- 353
I ++ + V+ QG E + S ++ + L + + + + A+ + E+
Sbjct: 475 SNIQSQMSQVVDDIDLCNNQGQETLSASRQLDESLQQILRDMHTIQDNSQRIAAAIEEQG 534
Query: 354 --VIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELR 400
+ E I E EN SA++ + VS A A+ E R
Sbjct: 535 SVMNHVSESIAELNTISENNMRSAQQCLTEVDTVSRQAHAMDEAVAEFR 583
>sp|Q00986|MCPA_CAUCR CHEMORECEPTOR MCPA (METHYL-ACCEPTING CHEMOTAXIS PROTEIN)
>gi|94570|pir||S23064 mcpA protein - Caulobacter
crescentus >gi|40424|emb|CAA47122.1| (X66502) mcpA
[Caulobacter crescentus]
Length = 657
Score = 112 bits (277), Expect = 8e-24
Identities = 91/352 (25%), Positives = 165/352 (46%), Gaps = 31/352 (8%)
Query: 53 TKVKVSADIEEYEKQLQREIDEIVKILD---RIAQGDLSVEDKEIGGMGAKVRQGIEDLR 109
T +KV D + + +QL+ + ++ + R + + +E + + + +G+E L
Sbjct: 255 TALKVFRDNQVHLEQLRADQEKSAALTADERRSKEAAAAAAAQEASLVVSNLAEGLEKLA 314
Query: 110 KSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMT 169
L + D + +K++ S+Q+ + I + + I+ +
Sbjct: 315 SG--DLTFRV---TADFPGDYRKLKDDFNAAMGSLQETMKVIAASTDGLSTGADEIAHAS 369
Query: 170 DTMRYIHDISKET---VSTMEEFEASMREMAQLAKEGGEKGRQAADQIE----EISRMME 222
D D+S+ T +++EE A++ E+ + RQA+D + E + +
Sbjct: 370 D------DLSRRTEQQAASLEETAAALDELTATVRRTAAGARQASDVVSTTRGEATHSGQ 423
Query: 223 KIEETVRGVAEMGKS---IENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADE 279
+ + V + E+ KS I I VI I+ QTNLLALNA +EAARAGEAG+GFAVVA E
Sbjct: 424 VVHQAVSAMGEIEKSSGQISQIIGVIDEIAFQTNLLALNAGVEAARAGEAGRGFAVVAQE 483
Query: 280 IRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEM 339
+R LA+ S +AA++I+ LI ++ + V + Q E ++ + E + +T++A
Sbjct: 484 VRALAQRSAEAAKEIKALISSSTQQVSQGVSLVGQTGEALQRIVTKVGEIDALVTEIAAS 543
Query: 340 MEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEE 391
E +E+ V Q + ++ AA E++TAA + E
Sbjct: 544 AAEQATGLNEVNTAVNQMDQVTQQN-------AAMVEQSTAATHSLKGETAE 588
>pir||H82147 methyl-accepting chemotaxis protein VC1868 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656398|gb|AAF95016.1| (AE004262) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 626
Score = 112 bits (277), Expect = 8e-24
Identities = 92/372 (24%), Positives = 179/372 (47%), Gaps = 59/372 (15%)
Query: 68 LQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKS---ISQLVLNIKNAAI 124
L + + +I ++L++++ GDLS I + Q + KS + LV +++ ++
Sbjct: 297 LSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLAFAVNKSCENLGGLVHVVQDRSV 356
Query: 125 DVRNHTKVMKENIEQ-------VADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHD 177
+ + + I+ V D Q++A A +VS+ Q+ ++ ++ + +
Sbjct: 357 ALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQQ-------VSHSLEVVAN 409
Query: 178 ISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKS 237
+SK ST+ A EG + A + E+ +++ ++ + +
Sbjct: 410 VSK--ASTLA------------AAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASAK 455
Query: 238 IENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIREL 297
++++ ++I+ I+EQTNLLALNAAIEAARAGE G+GFAVVADE+R LA + A +I
Sbjct: 456 VDSVMDIINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVRTVNAVSEISGT 515
Query: 298 IKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQE 357
I+ + K S EVI ++ Q + MEE + K ++ + + +
Sbjct: 516 IE-----------------TMKKESAEVI----LFMNQSEQTMEEGQSKGNQAMQALQRI 554
Query: 358 GEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQ-------ELRESVKELDRLV 410
+ +E E + +S +E +A ++ ++ + + SSA+Q +LR + +E++
Sbjct: 555 TQGTDEAASQTERIFSSIKELSATSQAMAESMSQISSAMQALESYNTQLRVTSREVETRA 614
Query: 411 DVLMEQISKFKL 422
+ L +F L
Sbjct: 615 ESLEHDCRRFTL 626
>emb|CAB54058.1| (AJ245436) methyl-accepting chemotaxis protein, 53.9 kD
[Pseudomonas putida]
Length = 492
Score = 111 bits (274), Expect = 2e-23
Identities = 91/343 (26%), Positives = 162/343 (46%), Gaps = 55/343 (16%)
Query: 66 KQLQREIDEIVKILDRIAQGDLSVE----DKEIGGMGAKV---RQGIEDLRKSISQLVLN 118
K+ + IDEIV +++ +++GDL+ + E+G M + + G+ L +SI + +
Sbjct: 180 KKTRSSIDEIVHVMNDMSRGDLTYRTIPSNDEVGKMQSSIIAMGAGVSALIESIKHIQGD 239
Query: 119 IKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDI 178
+ N+A + N ++ +I A + + A++Q+S
Sbjct: 240 LFNSAGEALNISQSTSNDICDQAGKIDEFVSALSQISFAIT------------------- 280
Query: 179 SKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVR----GVAEM 234
ET + + A E QLA G + A I +S+ + ++ +A++
Sbjct: 281 --ETSNAANKSSALSSEGRQLAVHGQKAIETAVSSINALSQRVNDSHVAIKCIEADIAKI 338
Query: 235 GKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDI 294
GK IE +I I++QTNLLALNAAIEAA AGEAGKGFAVVADE+R LA+ + + +I
Sbjct: 339 GKIIE----IIDQITDQTNLLALNAAIEAAHAGEAGKGFAVVADEVRSLAQRTNNSTYEI 394
Query: 295 RELIKQI-----------GDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEM 343
+ +I + GD + ES +E ++ +++ + Q+A++
Sbjct: 395 QAMIASLNKGIFFALGVMGDCVVESKNSVNAASEASRSIEKIVDSVSQVMLQIAQV---- 450
Query: 344 EVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVS 386
ASE + V+++ + + + +AA E + EV+
Sbjct: 451 -ATASEEQSAVVKD---MLDNANIIREIAAGVELGSRRISEVN 489
>pir||C69832 methyl-accepting chemotaxis protein homolog yhfV - Bacillus
subtilis >gi|2226258|emb|CAA74545.1| (Y14084)
hypothetical protein [Bacillus subtilis]
>gi|2633374|emb|CAB12878.1| (Z99109) similar to
methyl-accepting chemotaxis protein [Bacillus subtilis]
Length = 432
Score = 108 bits (268), Expect = 9e-23
Identities = 105/403 (26%), Positives = 191/403 (47%), Gaps = 57/403 (14%)
Query: 26 VFNSIPGAIVGGIVGVGIASYINYKGETK----VKVSADIEEYEKQLQREI--------- 72
V + I IV + A Y N E+ + + ++ ++ L+R I
Sbjct: 50 VLEQLQPLIQENIVNIVDAFYKNLDHESSLMDIINDHSSVDRLKQTLKRHIQEMFAGVID 109
Query: 73 DEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQL----VLNIKNAAIDVRN 128
DE ++ +RIA L + MGA ++L S+ + + N + ++
Sbjct: 110 DEFIEKRNRIASIHLRIGLLPKWYMGA-----FQELLLSMIDIYEASITNQQELLKAIKA 164
Query: 129 HTKVMKENIEQVADSVQQVAEAI----NQVSIEAQREQENI--SKMTDTMRYIHDISKET 182
TK++ N+EQ Q V EA NQ E Q E++N+ K+ +T I ++ ET
Sbjct: 165 TTKIL--NLEQ-----QLVLEAFQSEYNQTRDE-QEEKKNLLHQKIQETSGSIANLFSET 216
Query: 183 VSTMEEFEASMREMAQLAKEG-------------GEKGRQAAD-QIEEISRMMEKIEETV 228
+++E ++Q +K G G+K + Q+ +I + +IE+ +
Sbjct: 217 SRSVQELVDKSEGISQASKAGTVTSSTVEEKSIGGKKELEVQQKQMNKIDTSLVQIEKEM 276
Query: 229 RGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESK 288
+ E+ + IE I +++ I+EQTNLL+LNA+IE+ARAGE GKGFAVVA+E+RKL+E++K
Sbjct: 277 VKLDEIAQQIEKIFGIVTGIAEQTNLLSLNASIESARAGEHGKGFAVVANEVRKLSEDTK 336
Query: 289 KAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKAS 348
K + EL+ +I ++ +K E++ ES +TQ+ + +E+
Sbjct: 337 KTVSTVSELVNNTNTQINIV-------SKHIKDVNELVSESKEKMTQINRLFDEIVHSMK 389
Query: 349 ELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEE 391
+E+ + ++ L L+ ++ + A+ + + EE
Sbjct: 390 ISKEQSGKIDVDLQAFLGGLQEVSRAVSHVAASVDSLVILTEE 432
>emb|CAB93675.1| (AJ404229) putative receptor protein [Rhodobacter sphaeroides]
Length = 553
Score = 108 bits (268), Expect = 9e-23
Identities = 100/363 (27%), Positives = 159/363 (43%), Gaps = 87/363 (23%)
Query: 68 LQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAIDVR 127
L+R +D + R+A GDLS + A+ R I +L KS
Sbjct: 214 LRRALD----LSKRVAAGDLSAQ------ADARGRDEIAELLKS---------------- 247
Query: 128 NHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTME 187
+M E + +V V VA ++ S E E +S+ + E S E
Sbjct: 248 --NNLMVEKLREVVGGVSSVARQVSSGSGEMAATSEQLSQG----------ASEQASATE 295
Query: 188 EFEASMREMAQLAKEGGEKGRQ----AADQIEEISRMMEKIEETVRGVAEMGKSIENITN 243
E AS+ +MA K+ + Q A+ E+ +EE V + +SI +
Sbjct: 296 EASASVEQMAANIKQAADNAMQTERIASKAAEDARASGAAVEEAVGAM----RSIADKIM 351
Query: 244 VISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGD 303
++ I+ QT+LLALNAA+EAARAGE G+GFAVVA E+RKLAE S+ AA
Sbjct: 352 MVQEIARQTDLLALNAAVEAARAGEHGRGFAVVASEVRKLAERSQAAA------------ 399
Query: 304 KIGESVEVTQQGAEVVKTST---EVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEK 360
E++Q A V+ +T E++ + V + + ++ ++ V + E
Sbjct: 400 -----AEISQLSAGTVRAATGAGEMLNQLVPDIENTSRLVTDISVASRE----------- 443
Query: 361 IEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKF 420
LAA A++ A +++ ++ SSA Q+L EL + L +S F
Sbjct: 444 ----------LAAGAQQVATAIQQLDKVTQQNSSASQQLAGGANELSGQAEQLEATVSFF 493
Query: 421 KLS 423
+L+
Sbjct: 494 RLA 496
>pir||T03461 methyl-accepting chemotaxis protein mcpA - Rhodobacter capsulatus
>gi|3128262|gb|AAC16114.1| (AF010496) methyl-accepting
chemoreceptor [Rhodobacter capsulatus]
Length = 881
Score = 107 bits (265), Expect = 2e-22
Identities = 87/328 (26%), Positives = 144/328 (43%), Gaps = 30/328 (9%)
Query: 60 DIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGI----EDLRKSISQL 115
D E E+ Q + ++V + R+A+ ++ G + A++ E LR +Q
Sbjct: 532 DAAEAERAAQLQEQQLV--VSRLAE---ALRAMSAGDLTARIETAFPAAYEGLRSDFNQA 586
Query: 116 VLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYI 175
V + + I + + SVQ A + S E R E + +
Sbjct: 587 VTRMAE-----------LLSEIVRASGSVQSEAHQLGAASGELGRRTETQAASLE----- 630
Query: 176 HDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMG 235
ET + M + AS+ + Q A+E Q + ++ + + + +A+
Sbjct: 631 -----ETAAAMNQMAASVAQALQGAREAARAVGQTRETTAAGREVVRRTLQAMTDIAQSS 685
Query: 236 KSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIR 295
+ I IT+VI I+ QTNLLALNA +EAARAGEAG+GFAVVA E+R LA+ S +AA +I
Sbjct: 686 EQISRITSVIDDIAFQTNLLALNAGVEAARAGEAGRGFAVVASEVRGLAQRSSEAAREIA 745
Query: 296 ELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVI 355
LI ++GE VE+ + +++ + L + E SE+ V
Sbjct: 746 GLIATSVRQVGEGVELASGSDAALGRIEDLVSRLDALLAAIETGAGEQSAGISEITAAVN 805
Query: 356 QEGEKIEEGLRFLENLAASAEETTAAAE 383
Q + + E AA+ + A+
Sbjct: 806 QLDQVTQHNAAMFEENAAATQALLGEAQ 833
>pir||H81431 methyl-accepting chemotaxis signal transduction protein Cj0144
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6967638|emb|CAB72628.1| (AL139074) methyl-accepting
chemotaxis signal transduction protein [Campylobacter
jejuni]
Length = 659
Score = 107 bits (264), Expect = 3e-22
Identities = 90/371 (24%), Positives = 174/371 (46%), Gaps = 27/371 (7%)
Query: 9 VTIITPVIPFVLTV-IPAVFNSIPGAIVGGIVGVGIASYINYKGETKVKVSADIEEYEKQ 67
+ I T +I +L I + + S AI G+ +INYK + + + Q
Sbjct: 294 IVIFTSIISVILLYFIVSKYLSPLAAIQTGLTS--FFDFINYKTKNVSTIEVKSNDEFGQ 351
Query: 68 LQREIDEIVKILDR-IAQGDLSVEDK-------EIGGMGAKVRQGIEDLR----KSISQL 115
+ I+E + R + Q + +V++ E G + A++ + + K++
Sbjct: 352 ISNAINENILATKRGLEQDNQAVKESVQTVSVVEGGNLTARITANPRNPQLIELKNVLNK 411
Query: 116 VLNIKNAAI--DVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMR 173
+L++ A + D+ K+ +E + D ++ A V + + I KM ++
Sbjct: 412 LLDVLQARVGSDMNAIHKIFEEY--KSLDFRNKLENASGSVELTTNALGDEIVKM---LK 466
Query: 174 YIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAE 233
D + + + + +++ + + + + A +EEI+ M+ + V
Sbjct: 467 QSSDFANALANESGKLQTAVQSLTTSSNSQAQSLEETAAALEEITSSMQNVSVKTSDVIT 526
Query: 234 MGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAED 293
+ I+N+T +I I++Q NLLALNAAIEAARAGE G+GFAVVADE+RKLAE ++K+ +
Sbjct: 527 QSEEIKNVTGIIGDIADQINLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSE 586
Query: 294 IRE----LIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASE 349
I L++ I D + ES++ G + S I ++ ++A + S+
Sbjct: 587 IEANTNLLVQSIND-MAESIKEQTAGITQINDSVAQIDQTTKDNVEIANESAIISSTVSD 645
Query: 350 LREKVIQEGEK 360
+ ++++ +K
Sbjct: 646 IANNILEDVKK 656
>pir||B81251 probable methyl-accepting chemotaxis signal transduction protein
Cj1564 [imported] - Campylobacter jejuni (strain NCTC
11168) >gi|6968981|emb|CAB73552.1| (AL139079) putative
methyl-accepting chemotaxis signal transduction protein
[Campylobacter jejuni]
Length = 662
Score = 106 bits (263), Expect = 4e-22
Identities = 90/377 (23%), Positives = 177/377 (46%), Gaps = 29/377 (7%)
Query: 5 AMVRVTIITPVIPF---VLTVIPAVFNSIPGAIVGGIVGVGIASYINYKGETKVKVSADI 61
A ++ ++ V+ F +L I + + S AI G+ +INYK + +
Sbjct: 291 AFIQAIVVIIVVVFSVILLYFIVSKYLSPLAAIQTGLTS--FFDFINYKTKNVSTIEVKS 348
Query: 62 EEYEKQLQREIDEIVKILDR-IAQGDLSVEDK-------EIGGMGAKVRQGIEDLR---- 109
+ Q+ I+E + R + Q + +V++ E G + A++ + +
Sbjct: 349 NDEFGQISNAINENILATKRGLEQDNQAVKESVQTVSVVEGGNLTARITANPRNPQLIEL 408
Query: 110 KSISQLVLNIKNAAI--DVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISK 167
K++ +L++ A + D+ K+ +E + D ++ A V + + I K
Sbjct: 409 KNVLNKLLDVLQARVGSDMNAIHKIFEEY--KSLDFRNKLENASGSVELTTNALGDEIVK 466
Query: 168 MTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEET 227
M ++ D + + + + +++ + + + + A +EEI+ M+ +
Sbjct: 467 M---LKQSSDFANALANESGKLQTAVQSLTTSSNSQAQSLEETAAALEEITSSMQNVSVK 523
Query: 228 VRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEES 287
V + I+N+T +I I++Q NLLALNAAIEAARAGE G+GFAVVADE+RKLAE +
Sbjct: 524 TSDVITQSEEIKNVTGIIGDIADQINLLALNAAIEAARAGEHGRGFAVVADEVRKLAERT 583
Query: 288 KKAAEDIRE----LIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEM 343
+K+ +I L++ I D + ES++ G + S I ++ ++A +
Sbjct: 584 QKSLSEIEANTNLLVQSIND-MAESIKEQTAGITQINDSVAQIDQTTKDNVEIANESAII 642
Query: 344 EVKASELREKVIQEGEK 360
S++ ++++ +K
Sbjct: 643 SSTVSDIANNILEDVKK 659
>sp|P43500|FRZC_MYXXA FRZCD PROTEIN (FRIZZY AGGREGATION PROTEIN FRZCD)
>gi|94523|pir||C32185 Frz CD protein - Myxococcus
xanthus >gi|150089|gb|AAA25395.1| (J04157) FrzCD protein
[Myxococcus xanthus]
Length = 417
Score = 106 bits (261), Expect = 6e-22
Identities = 104/419 (24%), Positives = 199/419 (46%), Gaps = 62/419 (14%)
Query: 19 VLTVIPAVFNS-IPGAIVGGIVGVGIASYINYKGETKVKVSADIEEYEKQLQ-REIDEIV 76
+LTV+ + +P +VG GV +A +N +V E+ K + +EID+ +
Sbjct: 43 LLTVLSGNLQARVPKELVGES-GVELAHLLN-----QVLDQFAASEHRKHVAAQEIDQAL 96
Query: 77 K-ILDRIAQGDLS-----VEDKEIGGMGAKVRQGIEDLR---KSISQLVLNIKNAAIDVR 127
++ + +GDLS ED ++G + + IE LR + I++ L + ++A
Sbjct: 97 DALIGLVREGDLSRWNTTTEDPQLGPLLEGFGKVIETLRTFVREINEAALRLSSSA---- 152
Query: 128 NHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIHDISKETVSTME 187
+V+ + + S +Q A AI++ + + + +++ + + +++ET+
Sbjct: 153 --NQVLAASTQHETSSTEQAA-AIHETTATMEELKHASAQIAENAGSVARVAEETLGAAR 209
Query: 188 EFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISS 247
++ E Q ++ G AD I ++S+ +E+I V VI
Sbjct: 210 AGRGAIGEFIQAMQQIRSDGVAVADSIAKLSKRVERIGTVVE--------------VIDE 255
Query: 248 ISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGE 307
I+++++LLALNAA+E +RAGEAGKGF++VA E+R+LAE + ++I+ LI + I E
Sbjct: 256 IADRSDLLALNAALEGSRAGEAGKGFSIVAAEMRRLAENVLDSTKEIKNLITE----IRE 311
Query: 308 SVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRF 367
+ AE K++T E E++ A++ E ++ ++ + R
Sbjct: 312 ATAAAAGAAEASKSAT--------------ESGEKLGAVAAQAVEGILAGVQETSDAARV 357
Query: 368 LENLA-----ASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFK 421
+ NLA + E+ A+ E+ + + A ++ + EL +L L E I +FK
Sbjct: 358 I-NLATQQQRTATEQVVASMAEIEDVTRQTTQASKQATGAAAELTQLAGRLAELIKRFK 415
>pir||E82379 methyl-accepting chemotaxis protein VCA1088 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658535|gb|AAF96981.1| (AE004434) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 384
Score = 106 bits (261), Expect = 6e-22
Identities = 83/300 (27%), Positives = 149/300 (49%), Gaps = 28/300 (9%)
Query: 131 KVMKENIEQVADSVQQV-------AEAINQVSIEAQR---EQENIS-KMTDTMRYIHDIS 179
+V+KENI++VA+ +++ AE +N QR EQ ++S ++ D +
Sbjct: 77 QVLKENIQRVAEPLEKQRLIINSSAETLNNSFFGLQRVSEEQSSVSTQLVDNLMANQGSE 136
Query: 180 KETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIE 239
+ + + + EA +++ Q+ + EK A I ++S+ ++ + +
Sbjct: 137 FDLMQVLPKTEAIIQQFVQILVDVSEKSISAVHSIHDMSQKLDMVFK------------- 183
Query: 240 NITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIK 299
+ N + S+SEQTNLLALNAAIEAARAGEAG+GFAVVA E+R L+ ++ I +K
Sbjct: 184 -LLNQVRSLSEQTNLLALNAAIEAARAGEAGRGFAVVAQEVRNLSIQAANLNTQIETEMK 242
Query: 300 QIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQ-VAEMMEEMEVKASELREKVIQEG 358
D + + + A T KE V Y+ + V ++ E+E + ++L+ Q
Sbjct: 243 VAQDTVDIANRTVGEMASFDMTQAIESKEKVDYMLRGVQQLNTEIEQEVNKLQRLGQQLT 302
Query: 359 EKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQS--SALQELRESVKELDRLVDVLMEQ 416
+++ EG R L+ ++ A ++ E A+Q +V++L ++ L E+
Sbjct: 303 QQVREGTRALQFTDIVYQQGEYALGSITFLQEASGLLKAVQSNSRNVQQLIENIEALQER 362
>pir||B71975 methyl-accepting chemotaxis protein (MCP) - Helicobacter pylori
(strain J99) >gi|4154599|gb|AAD05672.1| (AE001448)
methyl-accepting chemotaxis protein (MCP) [Helicobacter
pylori J99]
Length = 675
Score = 105 bits (259), Expect = 1e-21
Identities = 77/317 (24%), Positives = 160/317 (50%), Gaps = 25/317 (7%)
Query: 51 GETKVKVSADIEEYEKQLQRE---IDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIED 107
G + ++ +I + +K +Q + + + +K++ + G+ +V +++
Sbjct: 366 GRMQTAINKNILQTQKTMQEDRQAVQDTIKVVSDVKAGNFAVRIT-----AEPASPDLKE 420
Query: 108 LRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVA--DSVQQVAEAINQVSIEAQREQENI 165
LR +++ ++ ++ + V H + + E + D ++ A +V + + I
Sbjct: 421 LRDALNGIMDYLQES---VGTHMPSIFKIFESYSGLDFRGRIQNASGRVELVTNALGQEI 477
Query: 166 SKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIE 225
KM +T + +K+ + + ++ + + + + + + IE I+ ++ +
Sbjct: 478 QKMLETSS---NFAKDLANDSANLKECVQNLEKASNSQHKSLMETSKTIENITTSIQGVS 534
Query: 226 ETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAE 285
+ E GK I++I +I I++QTNLLALNAAIEAARAGE G+GFAVVADE+RKLAE
Sbjct: 535 SQSEAMIEQGKDIKSIVEIIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAE 594
Query: 286 ESKKAAEDIRE----LIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVA---- 337
++K+ +I L++ I D ES++ + E + S E ++ ++A
Sbjct: 595 RTQKSLSEIEANINILVQSISD-TSESIKNQVKEVEEINASIEALRSVTEGNLKIASDSL 653
Query: 338 EMMEEMEVKASELREKV 354
E+ +E++ ++++ E V
Sbjct: 654 EISQEIDKVSNDILEDV 670
>pir||E81444 probable methyl-accepting chemotaxis signal transduction protein
Cj0262c [imported] - Campylobacter jejuni (strain NCTC
11168) >gi|6967739|emb|CAB72730.1| (AL139074) putative
methyl-accepting chemotaxis signal transduction protein
[Campylobacter jejuni]
Length = 665
Score = 105 bits (259), Expect = 1e-21
Identities = 81/333 (24%), Positives = 159/333 (47%), Gaps = 24/333 (7%)
Query: 46 YINYKGETKVKVSADIEEYEKQLQREIDEIVKILDR-IAQGDLSVEDK-------EIGGM 97
+INYK + + + Q+ I+E + R + Q + +V++ E G +
Sbjct: 336 FINYKTKNVSTIEVKSNDEFGQISNAINENILATKRGLEQDNQAVKESVQTVSVVEGGNL 395
Query: 98 GAKVRQGIEDLR----KSISQLVLNIKNAAI--DVRNHTKVMKENIEQVADSVQQVAEAI 151
A++ + + K++ +L++ A + D+ K+ +E + D ++ A
Sbjct: 396 TARITANPRNPQLIELKNVLNKLLDVLQARVGSDMNAIHKIFEEY--KSLDFRNKLENAS 453
Query: 152 NQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAA 211
V + + I KM ++ D + + + + +++ + + + + A
Sbjct: 454 GSVELTTNALGDEIVKM---LKQSSDFANALANESGKLQTAVQSLTTSSNSQAQSLEETA 510
Query: 212 DQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGK 271
+EEI+ M+ + V + I+N+T +I I++Q NLLALNAAIEAARAGE G+
Sbjct: 511 AALEEITSSMQNVSVKTSDVITQSEEIKNVTGIIGDIADQINLLALNAAIEAARAGEHGR 570
Query: 272 GFAVVADEIRKLAEESKKAAEDIRE----LIKQIGDKIGESVEVTQQGAEVVKTSTEVIK 327
GFAVVADE+RKLAE ++K+ +I L++ I D + ES++ G + S I
Sbjct: 571 GFAVVADEVRKLAERTQKSLSEIEANTNLLVQSIND-MAESIKEQTAGITQINDSVAQID 629
Query: 328 ESVSYLTQVAEMMEEMEVKASELREKVIQEGEK 360
++ ++A + S++ ++++ +K
Sbjct: 630 QTTKDNVEIANESAIISSTVSDIANNILEDVKK 662
>sp|P29486|TCPI_VIBCH TOXIN CORREGULATED PILUS BIOSYNTHESIS PROTEIN I (TCP PILUS
BIOSYNTHESIS PROTEIN TCPI) >gi|409772|gb|AAA21729.1|
(L25659) toxin co-regulated pilus [Vibrio cholerae]
Length = 620
Score = 104 bits (256), Expect = 2e-21
Identities = 94/375 (25%), Positives = 182/375 (48%), Gaps = 35/375 (9%)
Query: 51 GETKVKVSADIEEYEKQLQREIDEIVKILDRIAQ----GDLSVEDKEIGGMGAKVRQGIE 106
GE K+ DI++ + +R+I I+ + G V KE+ G+ ++R+ I
Sbjct: 243 GENKLFTIIDIQQIVQTYKRDIQLIIAGFSGFSCVMLIGLYWVLSKELSGV-RQIREWIL 301
Query: 107 DLRK----------------SISQLVLNIKNAAIDV-RNHTKVMKENIEQVADSVQQVAE 149
L +I+Q + N++ +DV RN + M + + D +
Sbjct: 302 SLSDGQIKERRPIKFHNELDTIAQSLENLQFRLLDVVRNSHRTMNDLSIKQTDITYSIEG 361
Query: 150 AINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQ 209
N +Q+E I ++ + S + + + E + +L E +
Sbjct: 362 NTNN----SQQELGLIEQVATATTQLSCTSFDVMQQAQSAELNAETAQKLIAESHDIIDS 417
Query: 210 AADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEA 269
++ Q E ++ + + ++ + + E +I ++T+VI++IS+QTNLLALNAAIEAARAGE
Sbjct: 418 SSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQTNLLALNAAIEAARAGEQ 477
Query: 270 GKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKES 329
G+GFAVVADE+R LA +++++ DI+ +I ++ ++ + +V + ++ + +
Sbjct: 478 GRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVMTRNVSLIHETQVANRAL 537
Query: 330 VSYLTQVAEMMEEME-----VKASELREKVIQEG-EKIEEGLRFL--ENLAASAEETTAA 381
++ +++ + E+ V + +K++ E K E +R+L ENL+A E T A
Sbjct: 538 IASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIRYLVQENLSA-MERTKQA 596
Query: 382 AEEVSAAAEEQSSAL 396
+ +S + AL
Sbjct: 597 NQNISDLTTNLNDAL 611
>pir||JC4735 methyl-accepting chemotaxis protein A - Rhodobacter capsulatus
>gi|1066850|gb|AAB05214.1| (L48927) putative
[Rhodobacter capsulatus]
Length = 645
Score = 103 bits (254), Expect = 4e-21
Identities = 89/329 (27%), Positives = 140/329 (42%), Gaps = 42/329 (12%)
Query: 59 ADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQ----GIEDLRKSISQ 114
A+ + E + ++ E + ++ +AQG ++ G + A++ + E LR
Sbjct: 315 AERQRTEAERDAQMREQLNVVSALAQG---LQALSAGDLTARITETFPPAYEGLRHDF-- 369
Query: 115 LVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRY 174
N AID + +I Q D V+ A + S+E R E
Sbjct: 370 ------NGAID---KVAGLIASIVQTTDVVETEAGQLGSASMELGRRTET---------- 410
Query: 175 IHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVR----- 229
+++EE A+M EMA + E R AA + E VR
Sbjct: 411 -------QAASLEETAAAMNEMAASVAQSVEGARSAAQAVNRTRATTATGREVVRQTQRA 463
Query: 230 --GVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEES 287
+A+ I IT+VI I+ QTNLLALNA +EAARAGE G+GFAVVA E+R LA+ S
Sbjct: 464 MDDIAQSSDKISRITHVIDDIAFQTNLLALNAGVEAARAGETGRGFAVVASEVRALAQRS 523
Query: 288 KKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKA 347
+AA +I LI ++ V++ + + ++ E L +A E
Sbjct: 524 SEAAREIAALIDTSSRQVAAGVDLAARSDTALGEIETLVTELDGLLDGIASAAAEQSSGI 583
Query: 348 SELREKVIQEGEKIEEGLRFLENLAASAE 376
SE+ V Q + + E +A+ +
Sbjct: 584 SEVTAAVNQLDQVTQHNAAMFEENSAATQ 612
>pir||D82274 toxin co-regulated pilus biosynthesis protein I VC0825 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655276|gb|AAF93988.1| (AE004168) toxin co-regulated
pilus biosynthesis protein I [Vibrio cholerae]
Length = 620
Score = 103 bits (254), Expect = 4e-21
Identities = 94/375 (25%), Positives = 182/375 (48%), Gaps = 35/375 (9%)
Query: 51 GETKVKVSADIEEYEKQLQREIDEIVKILDRIAQ----GDLSVEDKEIGGMGAKVRQGIE 106
GE K+ DI++ + +R+I I+ + G V KE+ G+ ++R+ I
Sbjct: 243 GENKLFTIIDIQQIVQTYKRDIQLIIAGFSGFSCVMLIGLYWVLSKELSGV-RQIREWIL 301
Query: 107 DLRK----------------SISQLVLNIKNAAIDV-RNHTKVMKENIEQVADSVQQVAE 149
L +I+Q + N++ +DV RN + M + + D +
Sbjct: 302 ALSDGQIKERRPIKFHNELDTIAQSLENLQFRLLDVVRNSHRTMNDLSIKQTDITYSIEG 361
Query: 150 AINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQ 209
N +Q+E I ++ + S + + + E + +L E +
Sbjct: 362 NTNN----SQQELGLIEQVATATTQLSCTSFDVMQQAQSAELNAETAQKLIAESHDIIDS 417
Query: 210 AADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEA 269
++ Q E ++ + + ++ + + E +I ++T+VI++IS+QTNLLALNAAIEAARAGE
Sbjct: 418 SSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQTNLLALNAAIEAARAGEQ 477
Query: 270 GKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKES 329
G+GFAVVADE+R LA +++++ DI+ +I ++ ++ + +V + ++ + +
Sbjct: 478 GRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVMTRNVSLIHETQVANRAL 537
Query: 330 VSYLTQVAEMMEEME-----VKASELREKVIQEG-EKIEEGLRFL--ENLAASAEETTAA 381
++ +++ + E+ V + +K++ E K E +R+L ENL+A E T A
Sbjct: 538 IASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIRYLVQENLSA-MERTKQA 596
Query: 382 AEEVSAAAEEQSSAL 396
+ +S + AL
Sbjct: 597 NQNISDLTTNLNDAL 611
>pir||C64532 methyl-accepting chemotaxis protein (tlpA) - Helicobacter pylori
(strain 26695) >gi|2313179|gb|AAD07167.1| (AE000531)
methyl-accepting chemotaxis protein (tlpA) [Helicobacter
pylori 26695]
Length = 675
Score = 102 bits (253), Expect = 5e-21
Identities = 76/317 (23%), Positives = 160/317 (49%), Gaps = 25/317 (7%)
Query: 51 GETKVKVSADIEEYEKQLQRE---IDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIED 107
G + ++ +I + +K +Q + + + +K++ + G+ +V +++
Sbjct: 366 GRMQTAINKNILQTQKIMQEDRQAVQDTIKVVSDVKAGNFAVRIT-----AEPASPDLKE 420
Query: 108 LRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVA--DSVQQVAEAINQVSIEAQREQENI 165
LR +++ ++ ++ + V H + + E + D ++ A +V + + I
Sbjct: 421 LRDALNGIMDYLQES---VGTHMPSIFKIFESYSGLDFRGRIQNASGRVELVTNALGQEI 477
Query: 166 SKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIE 225
KM +T + +K+ + + ++ + + + + + + IE I+ ++ +
Sbjct: 478 QKMLETSS---NFAKDLANDSANLKECVQNLEKASNSQHKSLMETSKTIENITTSIQGVS 534
Query: 226 ETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAE 285
+ E G+ I++I +I I++QTNLLALNAAIEAARAGE G+GFAVVADE+RKLAE
Sbjct: 535 SQSEAMIEQGQDIKSIVEIIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAE 594
Query: 286 ESKKAAEDIRE----LIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVA---- 337
++K+ +I L++ I D ES++ + E + S E ++ ++A
Sbjct: 595 RTQKSLSEIEANINILVQSISD-TSESIKNQVKEVEEINASIEALRSVTEGNLKIASDSL 653
Query: 338 EMMEEMEVKASELREKV 354
E+ +E++ ++++ E V
Sbjct: 654 EISQEIDKVSNDILEDV 670
>pir||H81324 probable MCP-domain signal transduction protein Cj1190c [imported]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6968623|emb|CAB73444.1| (AL139077) putative
MCP-domain signal transduction protein [Campylobacter
jejuni]
Length = 459
Score = 101 bits (248), Expect = 2e-20
Identities = 88/374 (23%), Positives = 170/374 (44%), Gaps = 31/374 (8%)
Query: 6 MVRVTIITPVIPFVLTVIPAVFNSIPGAIVGGIVGVGIASYINYKGETKVKVSADIEEYE 65
MV+ ++ + V+ V+ +F I VG I+ V IA + Y +
Sbjct: 1 MVKNGLLLTIFLSVIGVLGVIFIHI---FVGAIIFVLIAVLMIY-----------LLRQH 46
Query: 66 KQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVLNIK--NAA 123
K Q ID+++ + + +G+ + K+ + ++L +I L ++ N +
Sbjct: 47 KDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLREINTS 106
Query: 124 IDVRN----HTKVMKENIEQV-ADSVQQVAEAINQVSIEAQREQEN----------ISKM 168
I + K + E ++ + A +++ + +A+ + + A+ +N +
Sbjct: 107 ISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMDLSLGNQ 166
Query: 169 TDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETV 228
M I + +S M+ ++ ++ A E G + + + ++ +ETV
Sbjct: 167 NKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDVVNSSKETV 226
Query: 229 RGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESK 288
+ ++I ++ VI I++QTNLLALNAAIEAARAGE G+GFAVVADE+RKLAE ++
Sbjct: 227 QTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQ 286
Query: 289 KAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKAS 348
++ +I I+ + ++Q +V S E I + ++ E + V
Sbjct: 287 RSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRLEENSSALGVNFG 346
Query: 349 ELREKVIQEGEKIE 362
+++I KI+
Sbjct: 347 SFAKRLILSVVKID 360
>pir||G71373 probable methyl-accepting chemotaxis protein (mcp1) - syphilis
spirochete >gi|1354776|gb|AAB01990.1| (U56999) MCP-1
[Treponema pallidum] >gi|3322296|gb|AAC65035.1|
(AE001189) methyl-accepting chemotaxis protein (mcp1)
[Treponema pallidum]
Length = 597
Score = 98.7 bits (242), Expect = 1e-19
Identities = 103/388 (26%), Positives = 187/388 (47%), Gaps = 53/388 (13%)
Query: 51 GETKVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRK 110
G T ++S D+ ++L+R E+ R AQ +LS ++ + + Q ++DL +
Sbjct: 223 GRTAQRLSQDLSSSSQRLERLFGEV----RRTAQ-ELSHNEQNLTETMDRAEQVVQDLTR 277
Query: 111 SISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTD 170
+ + A+ ++ N E++ S++++ E + A+ E + ++
Sbjct: 278 YTGAVR---EELAVQGEGFSQTRVVN-EELGSSLRELDEQMEAQGERAREALEAVERLGS 333
Query: 171 TMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETV-- 228
T +H++ + + +FEA + +K G E + RMME IEE
Sbjct: 334 T---VHNLRGKFSAVHADFEA----ITTASKTGKEC----------VGRMMEVIEEITSR 376
Query: 229 -RGVAEMGKSIENITN-VISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEE 286
RG+A +TN ++ IS +TNLLA+NAAIEAA AG+AG+GFAVVA EIR LA
Sbjct: 377 SRGLA--------VTNALVVDISGRTNLLAMNAAIEAAHAGDAGRGFAVVAGEIRSLAAR 428
Query: 287 SKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVK 346
+ + +++K+I IGES + A V ++ T++ + + T +A++ ++V
Sbjct: 429 TAAESGATGKMLKEIEAVIGESGHAS---AGVAQSFTDIRGKVDGFSTILADISGAVQV- 484
Query: 347 ASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEV----SAAAEEQSSALQELRES 402
V +E E+ E +R + +A E EV +A AE + Q++
Sbjct: 485 -------VGEENERTVERMRTVTGQLCTAREQGKVIAEVCTRGAAHAERLTRDAQKVCAE 537
Query: 403 VKELDRLVDVLMEQISKFKLSKDHESQV 430
V+ + V+VL E +++ + + H +V
Sbjct: 538 VETMIGNVEVLTEVVARTRAVELHTREV 565
>gb|AAC04555.1| (AF047698) putative methyl-accepting chemotaxis protein [Treponema
pallidum]
Length = 644
Score = 98.3 bits (241), Expect = 1e-19
Identities = 78/386 (20%), Positives = 174/386 (44%), Gaps = 36/386 (9%)
Query: 70 REIDEIVKILDRIAQGDLSVED-----KEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAI 124
REI + + + I GD + D + G+ A+ + D ++ L + ++
Sbjct: 262 REITRLRVLAECIGTGDYTCADVPRETRTSIGLLARSLSSLRDKDRAFFSRFLQLTQSSS 321
Query: 125 DVRNHTKVMKENIEQVADSVQQVAEAINQ------VSIEAQRE-----QENISKMTDTMR 173
+ + + ++E+ A + ++ + +N+ +I + +E E + ++ ++
Sbjct: 322 AIAHTAETDIAHLEEAARTTKEEIDHVNENVTAQTATISSSKEIVGTMVEGVGRLNASVE 381
Query: 174 YIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAE 233
+ +++ +E+ + + ++ + + + ++ + + E + +++
Sbjct: 382 AESETVTRSITLVEQMVEKIHSIEKIIESNDARVGRLREETNRAGNLTNRSLELTQNISK 441
Query: 234 MGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAED 293
K++ + VI I+ QT LLA+NAAIEAA AG+ G+GFAVVADEIRKLAEES + +
Sbjct: 442 SSKALLQASLVIRKIASQTTLLAMNAAIEAAHAGQDGRGFAVVADEIRKLAEESNEQGKI 501
Query: 294 IRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREK 353
I ++ Q+ +KI + + ++ + +E + V MEE +R
Sbjct: 502 ISSVLVQLTEKIEHIAQQAESLSKQFSNLFVLAEEVKQRESTVMHAMEEQSSGGEYIRRS 561
Query: 354 -----------------VIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSAL 396
++++GE + L+ + LA + T A +++A+ A+
Sbjct: 562 MEAITGNRRRIRGGISLMLKDGELV---LKDMNELAHNTGGITVAMHDMAASTSRILDAV 618
Query: 397 QELRESVKELDRLVDVLMEQISKFKL 422
++ E +D+L Q+++ +L
Sbjct: 619 TSVKIIASENKNAMDMLTNQLTQLRL 644
>pir||F71298 probable methyl-accepting chemotaxis protein (mcp2-2) - syphilis
spirochete >gi|3322938|gb|AAC65613.1| (AE001239)
methyl-accepting chemotaxis protein (mcp2-2) [Treponema
pallidum]
Length = 654
Score = 98.3 bits (241), Expect = 1e-19
Identities = 78/386 (20%), Positives = 174/386 (44%), Gaps = 36/386 (9%)
Query: 70 REIDEIVKILDRIAQGDLSVED-----KEIGGMGAKVRQGIEDLRKSISQLVLNIKNAAI 124
REI + + + I GD + D + G+ A+ + D ++ L + ++
Sbjct: 272 REITRLRVLAECIGTGDYTCADVPRETRTSIGLLARSLSSLRDKDRAFFSRFLQLTQSSS 331
Query: 125 DVRNHTKVMKENIEQVADSVQQVAEAINQ------VSIEAQRE-----QENISKMTDTMR 173
+ + + ++E+ A + ++ + +N+ +I + +E E + ++ ++
Sbjct: 332 AIAHTAETDIAHLEEAARTTKEEIDHVNENVTAQTATISSSKEIVGTMVEGVGRLNASVE 391
Query: 174 YIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAE 233
+ +++ +E+ + + ++ + + + ++ + + E + +++
Sbjct: 392 AESETVTRSITLVEQMVEKIHSIEKIIESNDARVGRLREETNRAGNLTNRSLELTQNISK 451
Query: 234 MGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAED 293
K++ + VI I+ QT LLA+NAAIEAA AG+ G+GFAVVADEIRKLAEES + +
Sbjct: 452 SSKALLQASLVIRKIASQTTLLAMNAAIEAAHAGQDGRGFAVVADEIRKLAEESNEQGKI 511
Query: 294 IRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREK 353
I ++ Q+ +KI + + ++ + +E + V MEE +R
Sbjct: 512 ISSVLVQLTEKIEHIAQQAESLSKQFSNLFVLAEEVKQRESTVMHAMEEQSSGGEYIRRS 571
Query: 354 -----------------VIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSAL 396
++++GE + L+ + LA + T A +++A+ A+
Sbjct: 572 MEAITGNRRRIRGGISLMLKDGELV---LKDMNELAHNTGGITVAMHDMAASTSRILDAV 628
Query: 397 QELRESVKELDRLVDVLMEQISKFKL 422
++ E +D+L Q+++ +L
Sbjct: 629 TSVKIIASENKNAMDMLTNQLTQLRL 654
>sp|Q52877|YCH1_RHIME HYPOTHETICAL 57.4 KDA PROTEIN IN CHEY1 5'REGION (ORF1)
>gi|2120807|pir||S61831 hypothetical protein 1 -
Rhizobium meliloti >gi|534834|gb|AAA86671.1| (U13166)
ORF1 [Sinorhizobium meliloti]
Length = 533
Score = 93.2 bits (228), Expect = 5e-18
Identities = 90/359 (25%), Positives = 151/359 (41%), Gaps = 31/359 (8%)
Query: 52 ETKVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKS 111
+T++ VS +Q QR++ E + D L + G G + ED +
Sbjct: 165 DTEIAVSLRFNALRQQHQRQLSEQRRD-DESELKTLFADFLRALGEGDLTARLPEDAPDT 223
Query: 112 ISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDT 171
+V + A +R+ + V + + + S A E + I + +
Sbjct: 224 YQPIVAGLNTALGQIRDALLAADKRATAAEAIVSDLPGSAAEFSGNAGAEAKAIDQHLAS 283
Query: 172 MRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGV 231
+ + + + + E EA + GE QA + +I EKI +
Sbjct: 284 LGTVTERIRTGAIRIGETEAQASRTRIAVERSGEIAGQAISAMADIEASAEKIGQ----- 338
Query: 232 AEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAA 291
I VI I+ QTNLLALNA IEAARAGE+G+GFAVVA E+R LA+ S +AA
Sbjct: 339 ---------IIGVIDEIAFQTNLLALNAGIEAARAGESGRGFAVVAQEVRALAQRSGEAA 389
Query: 292 EDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELR 351
+I++L+ ++ VE+ + + + E + VS V + E E + ++L
Sbjct: 390 REIKQLVTGTKGQVVAGVEIVGRTQHAISSIAEQV---VSINEAVTGIAREAECQVNDLA 446
Query: 352 EKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVK--ELDR 408
+ G +A + + A A A+ ++ + EL E+V+ LDR
Sbjct: 447 SATSEIG-----------GVAQAMNRSAALAGAALASTDDLHGVIVELGETVRRFHLDR 494
>pir||D70174 methyl-accepting chemotaxis protein (mcp-3) homolog - Lyme disease
spirochete >gi|2688521|gb|AAC66954.1| (AE001161)
methyl-accepting chemotaxis protein (mcp-3) [Borrelia
burgdorferi]
Length = 735
Score = 90.1 bits (220), Expect = 4e-17
Identities = 85/344 (24%), Positives = 163/344 (46%), Gaps = 33/344 (9%)
Query: 100 KVRQGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENI---EQVADSVQQVAEAINQVSI 156
K++ EDL + + Q+ I N T+ + +I EQ+ D+ + ++I +
Sbjct: 402 KIKFYSEDLNEYLEQIETAISN--------TESIDSSILVYEQLRDTFSRFEKSI----V 449
Query: 157 EAQREQENISK-MTDTMRYIHDIS---KETVSTMEEFEASMREMAQLAKEGGEKGRQAAD 212
+ + E+I+ + D +YI +IS +E+VS + ++ ++A
Sbjct: 450 DILKGFESIADPINDHNKYISEISSNFEESVSFFYSIDKNLEIFNKVATINSTDIENIKS 509
Query: 213 QIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKG 272
++ +++ + E + + + S++++ ++ SIS QTN+LA+NAAIEAA+AG+AGK
Sbjct: 510 KVFDLNIVFENVNKNFADLLSQTNSLQSVNKLLVSISAQTNMLAMNAAIEAAKAGDAGKS 569
Query: 273 FAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEV---IKES 329
FAVVA+EIRKLA S K ++ I++ +K + I + + + K ++ + +
Sbjct: 570 FAVVAEEIRKLAINSGKYSKTIKDELKTVDSII---AVINSEIDTIYKNFIDIQDNVDNN 626
Query: 330 VSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAA 389
S +V + + + E +E+ + KI + + + + +S
Sbjct: 627 FSRHEKVDLTLAKHFKEIGEFKERYLSHDTKIRDAKNMYKEIFNN-------HYFISGKF 679
Query: 390 EEQSSALQELRESVKELDRLVDVLMEQISKFKLSKDHESQVKKI 433
S L+E + S LD V L E S K SKD + K++
Sbjct: 680 NNFSQDLKEFKVSKMNLD-AVSSLQEYSSLVKSSKDKILKTKEL 722
>gi|11321579 myosin, heavy polypeptide 13, skeletal muscle; extraocular muscle
myosin heavy chain [Homo sapiens]
>gi|4808809|gb|AAD29948.1| (AF111782) myosin heavy chain
[Homo sapiens]
Length = 1938
Score = 76.5 bits (185), Expect = 5e-13
Identities = 79/390 (20%), Positives = 169/390 (43%), Gaps = 24/390 (6%)
Query: 52 ETKVKVSADIEEYEKQLQREIDEIVKILDRIAQG------DLSVEDKEIGGM---GAKVR 102
E KVK ++ E L+ I ++ K + + DL VE+ ++ G+ AK+
Sbjct: 976 ENKVK---NLSEEMTALEENISKLTKEKKSLQEAHQQTLDDLQVEEDKVNGLIKINAKLE 1032
Query: 103 QGIEDLRKSISQ---LVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQ 159
Q +DL S+ Q L +++ A + K+ +E+I + + QQ+ E + + E
Sbjct: 1033 QQTDDLEGSLEQEKKLRADLERAKRKLEGDLKMSQESIMDLENEKQQIEEKLKKKEFELS 1092
Query: 160 REQENIS-KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEIS 218
+ Q I + ++++ I KE + +EE E + L + ++ A ++EEIS
Sbjct: 1093 QLQARIDDEQVHSLQFQKKI-KELQARIEELEEEIEAEHTLRAKIEKQRSDLARELEEIS 1151
Query: 219 RMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVAD 278
+E+ EM K E + E+ L + A A + A + +
Sbjct: 1152 ERLEEASGATSAQIEMNKKREAEFQKMRRDLEEATLQ--HEATAATLRKKQADSVAELGE 1209
Query: 279 EIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLT---- 334
+I L +K ++ EL +I D + ++E + ++ + +++ S +
Sbjct: 1210 QIDNLQRVKQKLEKEKSELKMEIDD-MASNIEALSKSKSNIERTCRTVEDQFSEIKAKDE 1268
Query: 335 QVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSS 394
Q +++ ++ ++ + L+ + + ++EE + L S + T EE+ EE++
Sbjct: 1269 QQTQLIHDLNMQKARLQTQNGELSHRVEEKESLISQLTKSKQALTQQLEELKRQMEEETK 1328
Query: 395 ALQELRESVKELDRLVDVLMEQISKFKLSK 424
A + +++ D+L EQ + + +K
Sbjct: 1329 AKNAMAHALQSSRHDCDLLREQYEEEQEAK 1358
>pir||F75103 probable purine NTPase PAB0812 - Pyrococcus abyssi (strain Orsay)
>gi|5458643|emb|CAB50131.1| (AJ248286) purine NTPase,
putative [Pyrococcus abyssi]
Length = 880
Score = 76.5 bits (185), Expect = 5e-13
Identities = 99/451 (21%), Positives = 194/451 (42%), Gaps = 66/451 (14%)
Query: 43 IASYINYKGETKVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVR 102
I + IN E+K A E E+ ++ DE+ K L I ++S + I G KVR
Sbjct: 174 IKTNINLLIESKKSFIARTENIEELIKANEDELTKKLSEI--NEISSKLPPIRGELEKVR 231
Query: 103 QGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSI------ 156
+ +++L +SI + +K ++ K ++E I Q+ S+++ I+++
Sbjct: 232 ENVKEL-ESIKGKISELKIQVEKLKGRKKGLEEKIVQIERSIEEKKAKISELEEIVKDIP 290
Query: 157 EAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEE 216
+ Q +++ K+ + + ++E+ ++ + ++ KEG +K +A + E+
Sbjct: 291 KLQEKEKEYRKLKGFRDEYESKLRRLEKELSKWESELKAIEEVIKEGEKKKERAEEIREK 350
Query: 217 ISRMMEKIEETVRGVAEM----------------------GKSIENI-------TNVISS 247
+S + +++EE V E+ G+ IE + T + +
Sbjct: 351 LSEIEKRLEELKPYVEELEDAKQVQKQIERLKARLKGLSPGEVIEKLESLEKERTEIEEA 410
Query: 248 ISEQTNLLA-----LNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIREL-IKQI 301
I E T + N ++A KG V R+L EE KK + L IK+I
Sbjct: 411 IKEITTRIGQMEQEKNERMKAIEELRKAKGKCPVCG--RELTEEHKKELMERYTLEIKKI 468
Query: 302 GDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKI 361
+++ + E ++ V E+ S + +AE ++E+E K + +++ E+
Sbjct: 469 EEELKRTTE-EERKLRVNLRKLEIKLREFSVMRDIAEQIKELESKLKGFNLEELEQKERE 527
Query: 362 EEGL---------------RFLENLAASAEETTAAAEEVSAAAEEQSSALQELR----ES 402
EGL R L+ + A E+V A EE + ++LR ES
Sbjct: 528 FEGLNEEFNKLKGELLGLERDLKRIKALEGRRKLIEEKVRKAKEELENLHRQLRELGFES 587
Query: 403 VKELDRLVDVLMEQISKFKLSKDHESQVKKI 433
V+EL+ + L E K+ +K ES+++++
Sbjct: 588 VEELNLRIQELEEFHDKYVEAKKSESELREL 618
>pir||B75150 chromosome segregation protein (smc1) PAB2109 - Pyrococcus abyssi
(strain Orsay) >gi|5457791|emb|CAB49281.1| (AJ248284)
chromosome segregation protein (smc1) [Pyrococcus
abyssi]
Length = 1177
Score = 76.1 bits (184), Expect = 7e-13
Identities = 80/389 (20%), Positives = 172/389 (43%), Gaps = 49/389 (12%)
Query: 61 IEEYEKQLQREIDEIVKILDRIAQGDLSVED--KEIGGMGAKVRQGIE--DLRKSISQLV 116
I EY+ + ++ + E+ + + +A+ DL + + K++ + + + DL++ + +
Sbjct: 169 IAEYDAKKEKALQELKQAEENLARVDLLIREVKKQLDKLEKERNDALRYLDLKERLERAR 228
Query: 117 LNIKNAAID-VRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYI 175
+ + I V + K E IE++ + ++++ E + +++ E R++ + ++ + +
Sbjct: 229 VELILGEIKKVESEIKGNDERIEKIEEEIKEIEEKLEEIAKEIVRKERELKEVEELIE-- 286
Query: 176 HDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIE--------EISRMMEKIEET 227
+ S+E + E + LAK E ++ D+ + E+ +++ +IE++
Sbjct: 287 KESSEEALKITREI-GEVNSKINLAKRNIEVAKKELDEAQIRLIKAKDELKKVLSEIEKS 345
Query: 228 VRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEES 287
+A GK E + N I + E+ N L + + GE + FAV +E + +E
Sbjct: 346 KGAIARWGKRKEALLNKIKELEEERNKLVV-------KLGEIDRTFAVAREEFDNVVKEL 398
Query: 288 KKAAEDIRE--------------------LIKQIGDKIGESVEVTQQGAEVVKTSTEVIK 327
+ A + + E ++K I E VE ++ E K ++
Sbjct: 399 ENARKSLYENEADIKRLEAEKERLSSRITILKAKLPGIREEVEKLREKLEEKKAELSNVE 458
Query: 328 ESVSYLTQVAEMMEE-MEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVS 386
+S ++Q +EE +E K SEL +KV E E +E L ++ A S A EE+
Sbjct: 459 NKISSISQRRRKVEEELEKKTSEL-QKVSSELESLEREL--IKAEAQSEVRVNRAVEELK 515
Query: 387 AAAEEQSSALQELRESVKELDRLVDVLME 415
+ S L E ++ D + + +E
Sbjct: 516 RSG--ISGIYGTLLELIRVKDEMYSIAVE 542
>gi|11498637 purine NTPase, putative [Archaeoglobus fulgidus]
>gi|7451889|pir||H69378 purine NTPase homolog -
Archaeoglobus fulgidus >gi|2649562|gb|AAB90211.1|
(AE001032) purine NTPase, putative [Archaeoglobus
fulgidus]
Length = 886
Score = 75.7 bits (183), Expect = 9e-13
Identities = 80/407 (19%), Positives = 184/407 (44%), Gaps = 65/407 (15%)
Query: 65 EKQLQREIDEIVKILDRIAQGDLSVED------KEIGGMGAKVRQ------GIEDLRKSI 112
E+Q++R+ +E ++RI++ S+E +E+ + +++++ +E LRK
Sbjct: 182 EEQIKRQKEEKKAEIERISEEIKSIESLREKLSEEVRNLESRLKELEEHKSRLESLRKQE 241
Query: 113 SQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTM 172
S ++ ++ +R K +KE +E++ D +++ A+ + ++ +A+R +++
Sbjct: 242 SSVLQEVRGLEEKLRELEKQLKEVVERIED-LEKKAKEVKELKPKAERYSILEKLLSEIN 300
Query: 173 RYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVA 232
+ + D+ K E A ++ + A+E K + +IEE+ R +E+ E++ R +
Sbjct: 301 QALRDVEKREGDLTRE-AAGIQAQLKKAEEDNSKLEEITKRIEELERELERFEKSHRLLE 359
Query: 233 EMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAE 292
+ ++ + + + + E+ + D++ K+ + KA E
Sbjct: 360 TLKPKMDRMQGIKAKLEEKN----------------------LTPDKVEKMYDLLSKAKE 397
Query: 293 DIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKES--------------------VSY 332
+ +E+ +++ I + + +GA+ +K + E +K + Y
Sbjct: 398 EEKEITEKLKKLIAKKSSLKTRGAQ-LKKAVEELKSAERTCPVCGRELDEEHRKNIMAEY 456
Query: 333 LTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENL---AASAEETTAAAEEVSAAA 389
++ + EE+ KA E+ +K+ + EK+E+ L E + +E A E+S+
Sbjct: 457 TREMKRIAEEL-AKADEIEKKLKERLEKVEKALEKQETVLKYRQMVDELKALENELSSHD 515
Query: 390 EEQSSALQELRESVKE-LDRL---VDVLMEQISKFKLSKDHESQVKK 432
E+ SA E VKE LD L +L+ S+ K K ++++
Sbjct: 516 AEKLSAESEEYRKVKERLDGLRGQQKILLSSASRIKELKSSLREIEE 562
>pir||T14156 kinesin-related protein - African clawed frog
>gi|2586071|gb|AAC60300.1| (AF027728) kinesin-related
protein [Xenopus laevis]
Length = 2954
Score = 74.5 bits (180), Expect = 2e-12
Identities = 78/434 (17%), Positives = 186/434 (41%), Gaps = 55/434 (12%)
Query: 47 INYKGETKVKVSAD---------IEEYEKQLQREIDEIVKILD--RIAQGDLSVEDKEIG 95
+N+K E + K + + +E+ + +LQ EI+E++K L A L ++++
Sbjct: 1718 LNFKNEAQQKTTKEQCLLNENKELEQSQHRLQCEIEELMKSLKDKESALETLKESEQKVI 1777
Query: 96 GMGAKVRQ---GIEDLRKSISQLVLNIKNAAIDVRNHTKVM---KENIEQVADSVQQVAE 149
+ ++ +E+L+ S ++ D+R ++ ++++ + +++QQ +
Sbjct: 1778 NLNQEMEMVMLEMEELKNSQRTVIAERDQLQDDLRESVEMSIETQDDLRKAQEALQQQKD 1837
Query: 150 AINQVSIEAQREQENISKMTDTMRYIHDISKETVSTMEEFEASMRE-------------- 195
+ +++ + QE IS + + M Y KET+S ++ S +
Sbjct: 1838 KVQELTSQISVLQEKISLLENQMLYNVATVKETLSERDDLNQSKQHLFSEIETLSLSLKE 1897
Query: 196 ----MAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGKSIENITNVISSISEQ 251
+ Q K+ + R+ D E+IS + E++ + + E E++ ++
Sbjct: 1898 KEFALEQAEKDKADAARKTIDITEKISNIEEQLLQQATNLKETLYERESLIQCKEQLALN 1957
Query: 252 TNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGE---- 307
T L + G+ + A+++ L E+ E I E + + + GE
Sbjct: 1958 TEHLRETLKSKDLALGKMEQERDEAANKVIALTEKMSSLEEQINENVTTLKEGEGEKETF 2017
Query: 308 ---------SVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEG 358
S ++ E +KT ++E+ +++ ++ + K S L E+++Q
Sbjct: 2018 YLQRPSKQQSSSQMEELRESLKTKDLQLEEAEKEISEATNEIKNLTAKISSLEEEILQNA 2077
Query: 359 EKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSAL-QELRESVKELDRL------VD 411
+ E + ENL S ++ + E++S + + A Q RE + ++++ +
Sbjct: 2078 SILNEAVSERENLRHSKQQLVSELEQLSLTLKSRDHAFAQSKREKDEAVNKIASLAEEIK 2137
Query: 412 VLMEQISKFKLSKD 425
+L +++ +F+ SK+
Sbjct: 2138 ILTKEMDEFRDSKE 2151
>gi|4502781 centromere protein E; Centromere autoantigen E (312kD) [Homo sapiens]
>gi|399227|sp|Q02224|CENE_HUMAN CENTROMERIC PROTEIN E
(CENP-E PROTEIN) >gi|284038|pir||S28261 centromere
protein E - human >gi|29865|emb|CAA78727.1| (Z15005)
CENP-E [Homo sapiens]
Length = 2663
Score = 74.1 bits (179), Expect = 3e-12
Identities = 93/436 (21%), Positives = 189/436 (43%), Gaps = 66/436 (15%)
Query: 61 IEEYEKQLQREIDEIVKILDRI-AQGDLSVEDKEIGGMGAKVRQG-IEDLRKSISQLVLN 118
++E +K + E D + + I A G + E+ +I + K Q I++LR+S+S+
Sbjct: 1205 LKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQ 1264
Query: 119 IKNAAIDVRNHTKVMKE-----NIEQVADSVQQVAEAINQVS-IEAQREQENISKMTDTM 172
I N ++HTK+ +E +++ +V++V+E ++ +E EQ T
Sbjct: 1265 IINTQDLEKSHTKLQEEIPVLHEEQELLPNVKKVSETQETMNELELLTEQSTTKDSTTLA 1324
Query: 173 RYIHDISKETVSTMEEFEASMREMAQLAKEGGE-KGRQAADQIEEISRMMEKIEETVRGV 231
R I E + E+F+ S E+ L KE K + A +++ ++ E I ET+ +
Sbjct: 1325 R----IEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKH-DQLKEHIRETLAKI 1379
Query: 232 AEMGKSIENITNVISSISEQTNLLA-------------------LNAAIEAARAGEAGKG 272
E E N+ +E T +++ L + + + K
Sbjct: 1380 QESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKS 1439
Query: 273 FAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSY 332
A D++++L E + ++ ++E IK+I K E+ E + +K E I E
Sbjct: 1440 VAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVN 1499
Query: 333 L----TQVAEMMEEMEVKASELREKV-----------IQEGEKIEEGLRFLENLAASAEE 377
L T+++ + +++E +L+ K+ I++ +++E + L+ +
Sbjct: 1500 LSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQLNIKQISEVQENVNELKQFKEHRKA 1559
Query: 378 TTAAAEEVSAAAEEQSSALQELRESVK------------------ELDRLVDVLMEQISK 419
+A + + + E ++ LQE +E ++ E D+L + E ++K
Sbjct: 1560 KDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAK 1619
Query: 420 FKLSKDHESQVKKITA 435
K S++ E Q K+TA
Sbjct: 1620 MKESQEKEYQFLKMTA 1635
>prf||1819485A CENP-E protein [Homo sapiens]
Length = 2663
Score = 74.1 bits (179), Expect = 3e-12
Identities = 93/436 (21%), Positives = 189/436 (43%), Gaps = 66/436 (15%)
Query: 61 IEEYEKQLQREIDEIVKILDRI-AQGDLSVEDKEIGGMGAKVRQG-IEDLRKSISQLVLN 118
++E +K + E D + + I A G + E+ +I + K Q I++LR+S+S+
Sbjct: 1205 LKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQ 1264
Query: 119 IKNAAIDVRNHTKVMKE-----NIEQVADSVQQVAEAINQVS-IEAQREQENISKMTDTM 172
I N ++HTK+ +E +++ +V++V+E ++ +E EQ T
Sbjct: 1265 IINTQDLEKSHTKLQEEIPVLHEEQELLPNVKKVSETQETMNELELLTEQSTTKDSTTLA 1324
Query: 173 RYIHDISKETVSTMEEFEASMREMAQLAKEGGE-KGRQAADQIEEISRMMEKIEETVRGV 231
R I E + E+F+ S E+ L KE K + A +++ ++ E I ET+ +
Sbjct: 1325 R----IEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKH-DQLKEHIRETLAKI 1379
Query: 232 AEMGKSIENITNVISSISEQTNLLA-------------------LNAAIEAARAGEAGKG 272
E E N+ +E T +++ L + + + K
Sbjct: 1380 QESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKS 1439
Query: 273 FAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSY 332
A D++++L E + ++ ++E IK+I K E+ E + +K E I E
Sbjct: 1440 VAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVN 1499
Query: 333 L----TQVAEMMEEMEVKASELREKV-----------IQEGEKIEEGLRFLENLAASAEE 377
L T+++ + +++E +L+ K+ I++ +++E + L+ +
Sbjct: 1500 LSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQLNIKQISEVQENVNELKQFKEHRKA 1559
Query: 378 TTAAAEEVSAAAEEQSSALQELRESVK------------------ELDRLVDVLMEQISK 419
+A + + + E ++ LQE +E ++ E D+L + E ++K
Sbjct: 1560 KDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAK 1619
Query: 420 FKLSKDHESQVKKITA 435
K S++ E Q K+TA
Sbjct: 1620 MKESQEKEYQFLKMTA 1635
>dbj|BAA34954.1| (AB015484) myosin heavy chain [Dugesia japonica]
Length = 1958
Score = 73.4 bits (177), Expect = 4e-12
Identities = 80/402 (19%), Positives = 181/402 (44%), Gaps = 36/402 (8%)
Query: 58 SADIEEYEKQLQREIDEIVK-ILD-----RIAQGDLSVEDKEIGGMGAKVRQGIEDLRKS 111
SA +EE +K++Q EI+E+ K ++D + A+ + + +D++I + ++ + E++ K
Sbjct: 926 SAGLEEMKKKMQGEIEELKKDVVDLESSLQKAEQEKTAKDQQIKALQDQIARQEEEMNKM 985
Query: 112 ISQLVLNIKNAAIDVRNHTK----VMKENIEQVADSVQQVAEAINQVSIEAQREQENISK 167
+ K AA +++ T+ +E ++ + + ++ + I+++ REQ+ +
Sbjct: 986 KKE-----KKAADELQKKTEESLQAEEEKVKNLNKAKAKLEQTIDEMEENLSREQKVRAD 1040
Query: 168 MTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEE----ISRMMEK 223
+ R I K+T T+++ E RE+ + K + A+ +IE+ ++++ +K
Sbjct: 1041 VEKVKRKIETELKQTQETVDDLERVKRELEEQLKRKEMELSNASSKIEDESGLVAQLQKK 1100
Query: 224 IEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKL 283
I+E + E+ + +E + + + L + R E G + + +K
Sbjct: 1101 IKELQARIQELEEDLEAERQARAKAEKSRHQLEGELEELSDRLEEQGGATSAQLELNKKR 1160
Query: 284 AEESKKAAEDIRELIKQIGDKIGES--------VEVTQQGAEVVKTSTEVIKESVSYLTQ 335
E K D+ E Q I +S E + Q ++ K ++ KE
Sbjct: 1161 EAELLKLKRDLEEANMQHDQMIAQSRKKQQDVANEFSDQLDQLQKAKAKIEKEKNEMKED 1220
Query: 336 VAEMMEEMEV--KASELREKVIQEGE----KIEEGLRFLENLAASAEETTAAAEEVSAAA 389
+ ++ ++E KA +K I+E E +++ L L A T+ ++++A
Sbjct: 1221 LNDLQSQLEALNKAKANSDKKIKELESQNAELQGKLEELNRHINDANNTSGKNQQLNA-- 1278
Query: 390 EEQSSALQELRESVKELDRLVDVLMEQISKFKLSKDHESQVK 431
E + L+E + +L ++ + Q+ + + + D ES+ K
Sbjct: 1279 -ELQARLEEAESQINQLTKVKQQMQTQLEEARQNLDDESRTK 1319
>dbj|BAA96489.1| (AB039333) chemotactic transducer CtpL [Pseudomonas aeruginosa]
Length = 632
Score = 73.4 bits (177), Expect = 4e-12
Identities = 56/219 (25%), Positives = 104/219 (46%), Gaps = 20/219 (9%)
Query: 57 VSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLV 116
++ I+ +++L R + ++V L A GD S +R EDLR
Sbjct: 318 IALAIDSLQRRLARVLGQLVPALSAWADGDFS--------RPISLRTRTEDLR------- 362
Query: 117 LNIKNAAIDVRNHTK----VMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTM 172
N++++ +R+ + EQVA S Q +AE + + +R+ + ++ D +
Sbjct: 363 -NLEDSLNRLRSFLAELVGAIHRRAEQVAGSSQTLAEVSSGLHAGVERQAGDTGQIRDAL 421
Query: 173 RYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVA 232
+ ++ + + R Q + G ++ + E+ ++ +++ +A
Sbjct: 422 GDMEAAIQQVAGDASQTADASRSAGQAVEHGQRVIGESLGGLRELVDEVQGNAQSIERLA 481
Query: 233 EMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGK 271
E +I ++ VI SI+EQTNLLALNAAIEAARAG+ G+
Sbjct: 482 EESATIGSVLTVIRSIAEQTNLLALNAAIEAARAGDQGR 520
>gb|AAC46490.1| (U09782) myosin heavy chain [Argopecten irradians]
>gi|1093399|prf||2103335A myosin:SUBUNIT=heavy chain
[Argopecten irradians]
Length = 1951
Score = 72.2 bits (174), Expect = 1e-11
Identities = 79/416 (18%), Positives = 178/416 (41%), Gaps = 48/416 (11%)
Query: 60 DIEEYEKQLQREIDEIVKILDRIA--QGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVL 117
DI + E LQ+ + ++I+ QG++S +D+ IG + K ++ +E+ K S +
Sbjct: 953 DIGDLENTLQKAEQDKAHKDNQISTLQGEISQQDEHIGKLN-KEKKALEEANKKTSDSL- 1010
Query: 118 NIKNAAIDVRNHTKVMKENIEQVADSVQQ-----------VAEAINQVSIEAQREQENIS 166
A D NH +K +EQ D ++ V +A +V + + QEN+
Sbjct: 1011 ---QAEEDKCNHLNKLKAKLEQALDELEDNLEREKKVRGDVEKAKRKVEQDLKSTQENVE 1067
Query: 167 KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMME---- 222
+ R + + + + + + + + L + K ++ +IEE+ +E
Sbjct: 1068 DLERVKRELEENVRRKEAEISSLNSKLEDEQNLVSQLQRKIKELQARIEELEEELEAERN 1127
Query: 223 ---KIE----ETVRGVAEMGKSIENITNVISSISE-----QTNLLALNAAIEAA------ 264
K+E E R + E+G+ ++ S+ E + LL + +E A
Sbjct: 1128 ARAKVEKQRAELNRELEELGERLDEAGGATSAQIELNKKREAELLKIRRDLEEASLQHEA 1187
Query: 265 -------RAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAE 317
+ +A A D+++K+ +S+K + +R ++ + +I + +
Sbjct: 1188 QISALRKKHQDAANEMADQVDQLQKVKSKSEKEKQQLRSEVEDLQAQIQHISKNKGCSEK 1247
Query: 318 VVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEE 377
V+K + + + L + E++ + S L+ + ++E+ + L+ +
Sbjct: 1248 VMKQFESQMSDLNARLEDSQRSINELQSQKSRLQAENSDLTRQLEDAEHRVSVLSKEKSQ 1307
Query: 378 TTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKLSK-DHESQVKK 432
++ E+ + EE++ A +L+ V+ + +D + EQ+ + + SK D + Q+ K
Sbjct: 1308 LSSQLEDARRSLEEETRARSKLQNEVRNMHADMDAIREQLEEEQESKSDVQRQLSK 1363
>gb|AAF62392.1|AF183909_2 (AF183909) myosin heavy chain catch (smooth) muscle specific
isoform [Argopecten irradians]
Length = 1229
Score = 72.2 bits (174), Expect = 1e-11
Identities = 79/416 (18%), Positives = 178/416 (41%), Gaps = 48/416 (11%)
Query: 60 DIEEYEKQLQREIDEIVKILDRIA--QGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVL 117
DI + E LQ+ + ++I+ QG++S +D+ IG + K ++ +E+ K S +
Sbjct: 231 DIGDLENTLQKAEQDKAHKDNQISTLQGEISQQDEHIGKLN-KEKKALEEANKKTSDSL- 288
Query: 118 NIKNAAIDVRNHTKVMKENIEQVADSVQQ-----------VAEAINQVSIEAQREQENIS 166
A D NH +K +EQ D ++ V +A +V + + QEN+
Sbjct: 289 ---QAEEDKCNHLNKLKAKLEQALDELEDNLEREKKVRGDVEKAKRKVEQDLKSTQENVE 345
Query: 167 KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMME---- 222
+ R + + + + + + + + L + K ++ +IEE+ +E
Sbjct: 346 DLERVKRELEENVRRKEAEISSLNSKLEDEQNLVSQLQRKIKELQARIEELEEELEAERN 405
Query: 223 ---KIE----ETVRGVAEMGKSIENITNVISSISE-----QTNLLALNAAIEAA------ 264
K+E E R + E+G+ ++ S+ E + LL + +E A
Sbjct: 406 ARAKVEKQRAELNRELEELGERLDEAGGATSAQIELNKKREAELLKIRRDLEEASLQHEA 465
Query: 265 -------RAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAE 317
+ +A A D+++K+ +S+K + +R ++ + +I + +
Sbjct: 466 QISALRKKHQDAANEMADQVDQLQKVKSKSEKEKQQLRSEVEDLQAQIQHISKNKGCSEK 525
Query: 318 VVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEE 377
V+K + + + L + E++ + S L+ + ++E+ + L+ +
Sbjct: 526 VMKQFESQMSDLNARLEDSQRSINELQSQKSRLQAENSDLTRQLEDAEHRVSVLSKEKSQ 585
Query: 378 TTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKLSK-DHESQVKK 432
++ E+ + EE++ A +L+ V+ + +D + EQ+ + + SK D + Q+ K
Sbjct: 586 LSSQLEDARRSLEEETRARSKLQNEVRNMHADMDAIREQLEEEQESKSDVQRQLSK 641
>gb|AAF62394.1| (AF183909) myosin heavy chain cardiac muscle specific isoform 1
[Argopecten irradians]
Length = 1243
Score = 72.2 bits (174), Expect = 1e-11
Identities = 79/416 (18%), Positives = 178/416 (41%), Gaps = 48/416 (11%)
Query: 60 DIEEYEKQLQREIDEIVKILDRIA--QGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVL 117
DI + E LQ+ + ++I+ QG++S +D+ IG + K ++ +E+ K S +
Sbjct: 231 DIGDLENTLQKAEQDKAHKDNQISTLQGEISQQDEHIGKLN-KEKKALEEANKKTSDSL- 288
Query: 118 NIKNAAIDVRNHTKVMKENIEQVADSVQQ-----------VAEAINQVSIEAQREQENIS 166
A D NH +K +EQ D ++ V +A +V + + QEN+
Sbjct: 289 ---QAEEDKCNHLNKLKAKLEQALDELEDNLEREKKVRGDVEKAKRKVEQDLKSTQENVE 345
Query: 167 KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMME---- 222
+ R + + + + + + + + L + K ++ +IEE+ +E
Sbjct: 346 DLERVKRELEENVRRKEAEISSLNSKLEDEQNLVSQLQRKIKELQARIEELEEELEAERN 405
Query: 223 ---KIE----ETVRGVAEMGKSIENITNVISSISE-----QTNLLALNAAIEAA------ 264
K+E E R + E+G+ ++ S+ E + LL + +E A
Sbjct: 406 ARAKVEKQRAELNRELEELGERLDEAGGATSAQIELNKKREAELLKIRRDLEEASLQHEA 465
Query: 265 -------RAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAE 317
+ +A A D+++K+ +S+K + +R ++ + +I + +
Sbjct: 466 QISALRKKHQDAANEMADQVDQLQKVKSKSEKEKQQLRSEVEDLQAQIQHISKNKGCSEK 525
Query: 318 VVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEE 377
V+K + + + L + E++ + S L+ + ++E+ + L+ +
Sbjct: 526 VMKQFESQMSDLNARLEDSQRSINELQSQKSRLQAENSDLTRQLEDAEHRVSVLSKEKSQ 585
Query: 378 TTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKLSK-DHESQVKK 432
++ E+ + EE++ A +L+ V+ + +D + EQ+ + + SK D + Q+ K
Sbjct: 586 LSSQLEDARRSLEEETRARSKLQNEVRNMHADMDAIREQLEEEQESKSDVQRQLSK 641
>gb|AAF62395.1| (AF183909) myosin heavy chain cardiac muscle specific isoform 2
[Argopecten irradians]
Length = 1253
Score = 72.2 bits (174), Expect = 1e-11
Identities = 79/416 (18%), Positives = 178/416 (41%), Gaps = 48/416 (11%)
Query: 60 DIEEYEKQLQREIDEIVKILDRIA--QGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVL 117
DI + E LQ+ + ++I+ QG++S +D+ IG + K ++ +E+ K S +
Sbjct: 231 DIGDLENTLQKAEQDKAHKDNQISTLQGEISQQDEHIGKLN-KEKKALEEANKKTSDSL- 288
Query: 118 NIKNAAIDVRNHTKVMKENIEQVADSVQQ-----------VAEAINQVSIEAQREQENIS 166
A D NH +K +EQ D ++ V +A +V + + QEN+
Sbjct: 289 ---QAEEDKCNHLNKLKAKLEQALDELEDNLEREKKVRGDVEKAKRKVEQDLKSTQENVE 345
Query: 167 KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMME---- 222
+ R + + + + + + + + L + K ++ +IEE+ +E
Sbjct: 346 DLERVKRELEENVRRKEAEISSLNSKLEDEQNLVSQLQRKIKELQARIEELEEELEAERN 405
Query: 223 ---KIE----ETVRGVAEMGKSIENITNVISSISE-----QTNLLALNAAIEAA------ 264
K+E E R + E+G+ ++ S+ E + LL + +E A
Sbjct: 406 ARAKVEKQRAELNRELEELGERLDEAGGATSAQIELNKKREAELLKIRRDLEEASLQHEA 465
Query: 265 -------RAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAE 317
+ +A A D+++K+ +S+K + +R ++ + +I + +
Sbjct: 466 QISALRKKHQDAANEMADQVDQLQKVKSKSEKEKQQLRSEVEDLQAQIQHISKNKGCSEK 525
Query: 318 VVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEE 377
V+K + + + L + E++ + S L+ + ++E+ + L+ +
Sbjct: 526 VMKQFESQMSDLNARLEDSQRSINELQSQKSRLQAENSDLTRQLEDAEHRVSVLSKEKSQ 585
Query: 378 TTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKLSK-DHESQVKK 432
++ E+ + EE++ A +L+ V+ + +D + EQ+ + + SK D + Q+ K
Sbjct: 586 LSSQLEDARRSLEEETRARSKLQNEVRNMHADMDAIREQLEEEQESKSDVQRQLSK 641
>emb|CAB64663.1| (AJ249992) pedal retractor muscle myosin heavy chain [Mytilus
galloprovincialis]
Length = 1708
Score = 71.8 bits (173), Expect = 1e-11
Identities = 82/444 (18%), Positives = 174/444 (38%), Gaps = 56/444 (12%)
Query: 45 SYINYKGETKVKVSADIEEYEKQLQREIDEIVKILDRIAQ--GDLSVEDKEIGGMGAKVR 102
S I YK E + +I + +LQ E+ EI + L+ G L+ + + + +
Sbjct: 1019 SEITYKVEETQRTIVEINSQKSKLQSEVTEINRQLEDAEHTIGSLTKDKSALTSQLEEAK 1078
Query: 103 QGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSI-EAQRE 161
+ +E+ + + ++N DV + + ++E E +D +Q+++A N+ ++ E
Sbjct: 1079 RSLEEETRMRQKFQSEVRNLNADVDSVRESLEEEQESKSDLQRQLSKAKNEAQQWRSKYE 1138
Query: 162 QENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMM 221
E +K + +S + + EA+ + + L K + D + E+ R
Sbjct: 1139 TEGAAKADELEESKRKLSAKLAEAEQAAEAANAKASGLEKAKNRLQGELDDLLIEVERSN 1198
Query: 222 EKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIR 281
+ + ++I+ T + + + + A +A + +D I
Sbjct: 1199 VNSSTLEKKQRQFDRTIQEWTLKVKELQTEIDTAHTEARGYSAELFRVKAQYEETSDTIE 1258
Query: 282 KLAEESKKAAEDIRELIKQIGDKIGESVEVT-------------------------QQGA 316
L E+K A++IREL Q+ D S E+ Q+ A
Sbjct: 1259 ALRRENKNLADEIRELSDQLSDGGRSSHEIEKAKRRLEMEKEELQAALEEAESALEQEEA 1318
Query: 317 EVVKTSTEVIKESVSYLTQVAEMMEEME------------------------VKASELRE 352
+VV++ E+ ++ E EE E +A +R+
Sbjct: 1319 KVVRSQLEMSTIRTEIDRRIHEKEEEFENTRRNHQRALESMQISLDAEAKGKAEAHRIRK 1378
Query: 353 KVIQEGEKIEEGLRFLENLAASAEETT----AAAEEVSAAAEEQSSALQELRESVKELDR 408
K+ Q+ ++E L A AE+ +E++ EE++ A E RES ++R
Sbjct: 1379 KLEQDINELEMALDTSNRAKAEAEKNLKRYIVQIQELTLKLEEETRARDESRESYVMIER 1438
Query: 409 LVDVLMEQISKFKLSKDHESQVKK 432
++L+ ++ + + + + + +K
Sbjct: 1439 RCNLLVSEVDEVRSALEQSERARK 1462
>sp|P25386|USO1_YEAST INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO1 >gi|4778|emb|CAA38253.1|
(X54378) Uso1 protein [Saccharomyces cerevisiae]
Length = 1790
Score = 71.0 bits (171), Expect = 2e-11
Identities = 81/379 (21%), Positives = 165/379 (43%), Gaps = 39/379 (10%)
Query: 52 ETKVKVSAD-IEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRK 110
ETK K + + EY+ + ++ D I K L++ + LS + K G+ K+ + + L +
Sbjct: 817 ETKDKENQTALLEYKSTIHKQEDSI-KTLEKGLETILSQKKKAEDGIN-KMGKDLFALSR 874
Query: 111 SISQLVLNIKNAAIDVR----NHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENIS 166
+ + N KN + NH K K E +A + ++ +AIN+ E + + N+S
Sbjct: 875 EMQAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEI-KAINENLEEMKIQCNNLS 933
Query: 167 KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEE 226
K + ISKE V F++ +A+L ++ D E +++ +EE
Sbjct: 934 KEKE------HISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEE 987
Query: 227 TVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEE 286
+ E + N+ N I S+S++ + F + I K E+
Sbjct: 988 SKN---ESSIQLSNLQNKIDSMSQEK------------------ENFQIERGSIEKNIEQ 1026
Query: 287 SKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVK----TSTEVIKESVSYLTQVAEMMEE 342
KK D+ + ++I K S + + ++K T+T E+V+ ++++ + EE
Sbjct: 1027 LKKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENVNKISELTKTREE 1086
Query: 343 MEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRES 402
+E + + + + K+E + L+ + + E ++ A E L LR +
Sbjct: 1087 LEAELAAYKNLKNELETKLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRAN 1146
Query: 403 VKELDRLVDVLMEQISKFK 421
++ L++ + L Q+ K++
Sbjct: 1147 LESLEKEHEDLAAQLKKYE 1165
>gi|6320145 Integrin analogue gene; Uso1p [Saccharomyces cerevisiae]
>gi|2133190|pir||S67593 transport protein USO1 - yeast
(Saccharomyces cerevisiae) >gi|1431059|emb|CAA98621.1|
(Z74106) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1790
Score = 71.0 bits (171), Expect = 2e-11
Identities = 81/379 (21%), Positives = 165/379 (43%), Gaps = 39/379 (10%)
Query: 52 ETKVKVSAD-IEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRK 110
ETK K + + EY+ + ++ D I K L++ + LS + K G+ K+ + + L +
Sbjct: 817 ETKDKENQTALLEYKSTIHKQEDSI-KTLEKGLETILSQKKKAEDGIN-KMGKDLFALSR 874
Query: 111 SISQLVLNIKNAAIDVR----NHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENIS 166
+ + N KN + NH K K E +A + ++ +AIN+ E + + N+S
Sbjct: 875 EMQAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEI-KAINENLEEMKIQCNNLS 933
Query: 167 KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEE 226
K + ISKE V F++ +A+L ++ D E +++ +EE
Sbjct: 934 KEKE------HISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEE 987
Query: 227 TVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEE 286
+ E + N+ N I S+S++ + F + I K E+
Sbjct: 988 SKN---ESSIQLSNLQNKIDSMSQEK------------------ENFQIERGSIEKNIEQ 1026
Query: 287 SKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVK----TSTEVIKESVSYLTQVAEMMEE 342
KK D+ + ++I K S + + ++K T+T E+V+ ++++ + EE
Sbjct: 1027 LKKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENVNKISELTKTREE 1086
Query: 343 MEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRES 402
+E + + + + K+E + L+ + + E ++ A E L LR +
Sbjct: 1087 LEAELAAYKNLKNELETKLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRAN 1146
Query: 403 VKELDRLVDVLMEQISKFK 421
++ L++ + L Q+ K++
Sbjct: 1147 LESLEKEHEDLAAQLKKYE 1165
>emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1268
Score = 71.0 bits (171), Expect = 2e-11
Identities = 81/379 (21%), Positives = 165/379 (43%), Gaps = 39/379 (10%)
Query: 52 ETKVKVSAD-IEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRK 110
ETK K + + EY+ + ++ D I K L++ + LS + K G+ K+ + + L +
Sbjct: 295 ETKDKENQTALLEYKSTIHKQEDSI-KTLEKGLETILSQKKKAEDGIN-KMGKDLFALSR 352
Query: 111 SISQLVLNIKNAAIDVR----NHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENIS 166
+ + N KN + NH K K E +A + ++ +AIN+ E + + N+S
Sbjct: 353 EMQAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEI-KAINENLEEMKIQCNNLS 411
Query: 167 KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEE 226
K + ISKE V F++ +A+L ++ D E +++ +EE
Sbjct: 412 KEKE------HISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEE 465
Query: 227 TVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEE 286
+ E + N+ N I S+S++ + F + I K E+
Sbjct: 466 SKN---ESSIQLSNLQNKIDSMSQEK------------------ENFQIERGSIEKNIEQ 504
Query: 287 SKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVK----TSTEVIKESVSYLTQVAEMMEE 342
KK D+ + ++I K S + + ++K T+T E+V+ ++++ + EE
Sbjct: 505 LKKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENVNKISELTKTREE 564
Query: 343 MEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRES 402
+E + + + + K+E + L+ + + E ++ A E L LR +
Sbjct: 565 LEAELAAYKNLKNELETKLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRAN 624
Query: 403 VKELDRLVDVLMEQISKFK 421
++ L++ + L Q+ K++
Sbjct: 625 LESLEKEHEDLAAQLKKYE 643
>sp|P24733|MYS_AEQIR MYOSIN HEAVY CHAIN, STRIATED MUSCLE >gi|102700|pir||A40997 myosin
heavy chain, striated adductor muscle - scallop
(Aequipecten irradians) >gi|5612|emb|CAA39247.1| (X55714)
myosin heavy chain [Argopecten irradians]
Length = 1938
Score = 70.6 bits (170), Expect = 3e-11
Identities = 77/416 (18%), Positives = 179/416 (42%), Gaps = 48/416 (11%)
Query: 60 DIEEYEKQLQREIDEIVKILDRIA--QGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVL 117
DI + E LQ+ + ++I+ QG++S +D+ IG + K ++ +E+ K S +
Sbjct: 950 DIGDLENTLQKAEQDKAHKDNQISTLQGEISQQDEHIGKLN-KEKKALEEANKKTSDSL- 1007
Query: 118 NIKNAAIDVRNHTKVMKENIEQVADSVQQ-----------VAEAINQVSIEAQREQENIS 166
A D NH +K +EQ D ++ V +A +V + + QEN+
Sbjct: 1008 ---QAEEDKCNHLNKLKAKLEQALDELEDNLEREKKVRGDVEKAKRKVEQDLKSTQENVE 1064
Query: 167 KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMME---- 222
+ R + + + + + + + + L + K ++ +IEE+ +E
Sbjct: 1065 DLERVKRELEENVRRKEAEISSLNSKLEDEQNLVSQLQRKIKELQARIEELEEELEAERN 1124
Query: 223 ---KIE----ETVRGVAEMGKSIENITNVISSISE-----QTNLLALNAAIEAA------ 264
K+E E R + E+G+ ++ S+ E + LL + +E A
Sbjct: 1125 ARAKVEKQRAELNRELEELGERLDEAGGATSAQIELNKKREAELLKIRRDLEEASLQHEA 1184
Query: 265 -------RAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAE 317
+ +A A D+++K+ + +K +D++ + + ++ +++ +
Sbjct: 1185 QISALRKKHQDAANEMADQVDQLQKVKSKLEKDKKDLKREMDDLESQMTHNMKNKGCSEK 1244
Query: 318 VVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEE 377
V+K + + + L + E++ + S L+ + ++E+ + L+ +
Sbjct: 1245 VMKQFESQMSDLNARLEDSQRSINELQSQKSRLQAENSDLTRQLEDAEHRVSVLSKEKSQ 1304
Query: 378 TTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKLSK-DHESQVKK 432
++ E+ + EE++ A +L+ V+ + +D + EQ+ + + SK D + Q+ K
Sbjct: 1305 LSSQLEDARRSLEEETRARSKLQNEVRNMHADMDAIREQLEEEQESKSDVQRQLSK 1360
>gb|AAB19995.1| myosin heavy chain=rod region [Aequipecten irradians=scallops,
Peptide Partial, 1104 aa]
Length = 1104
Score = 70.6 bits (170), Expect = 3e-11
Identities = 77/416 (18%), Positives = 179/416 (42%), Gaps = 48/416 (11%)
Query: 60 DIEEYEKQLQREIDEIVKILDRIA--QGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVL 117
DI + E LQ+ + ++I+ QG++S +D+ IG + K ++ +E+ K S +
Sbjct: 116 DIGDLENTLQKAEQDKAHKDNQISTLQGEISQQDEHIGKLN-KEKKALEEANKKTSDSL- 173
Query: 118 NIKNAAIDVRNHTKVMKENIEQVADSVQQ-----------VAEAINQVSIEAQREQENIS 166
A D NH +K +EQ D ++ V +A +V + + QEN+
Sbjct: 174 ---QAEEDKCNHLNKLKAKLEQALDELEDNLEREKKVRGDVEKAKRKVEQDLKSTQENVE 230
Query: 167 KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMME---- 222
+ R + + + + + + + + L + K ++ +IEE+ +E
Sbjct: 231 DLERVKRELEENVRRKEAEISSLNSKLEDEQNLVSQLQRKIKELQARIEELEEELEAERN 290
Query: 223 ---KIE----ETVRGVAEMGKSIENITNVISSISE-----QTNLLALNAAIEAA------ 264
K+E E R + E+G+ ++ S+ E + LL + +E A
Sbjct: 291 ARAKVEKQRAELNRELEELGERLDEAGGATSAQIELNKKREAELLKIRRDLEEASLQHEA 350
Query: 265 -------RAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAE 317
+ +A A D+++K+ + +K +D++ + + ++ +++ +
Sbjct: 351 QISALRKKHQDAANEMADQVDQLQKVKSKLEKDKKDLKREMDDLESQMTHNMKNKGCSEK 410
Query: 318 VVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEE 377
V+K + + + L + E++ + S L+ + ++E+ + L+ +
Sbjct: 411 VMKQFESQMSDLNARLEDSQRSINELQSQKSRLQAENSDLTRQLEDAEHRVSVLSKEKSQ 470
Query: 378 TTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKLSK-DHESQVKK 432
++ E+ + EE++ A +L+ V+ + +D + EQ+ + + SK D + Q+ K
Sbjct: 471 LSSQLEDARRSLEEETRARSKLQNEVRNMHADMDAIREQLEEEQESKSDVQRQLSK 526
>gb|AAF62391.1|AF183909_1 (AF183909) myosin heavy chain striated muscle specific isoform
[Argopecten irradians]
Length = 1219
Score = 70.6 bits (170), Expect = 3e-11
Identities = 77/416 (18%), Positives = 179/416 (42%), Gaps = 48/416 (11%)
Query: 60 DIEEYEKQLQREIDEIVKILDRIA--QGDLSVEDKEIGGMGAKVRQGIEDLRKSISQLVL 117
DI + E LQ+ + ++I+ QG++S +D+ IG + K ++ +E+ K S +
Sbjct: 231 DIGDLENTLQKAEQDKAHKDNQISTLQGEISQQDEHIGKLN-KEKKALEEANKKTSDSL- 288
Query: 118 NIKNAAIDVRNHTKVMKENIEQVADSVQQ-----------VAEAINQVSIEAQREQENIS 166
A D NH +K +EQ D ++ V +A +V + + QEN+
Sbjct: 289 ---QAEEDKCNHLNKLKAKLEQALDELEDNLEREKKVRGDVEKAKRKVEQDLKSTQENVE 345
Query: 167 KMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMME---- 222
+ R + + + + + + + + L + K ++ +IEE+ +E
Sbjct: 346 DLERVKRELEENVRRKEAEISSLNSKLEDEQNLVSQLQRKIKELQARIEELEEELEAERN 405
Query: 223 ---KIE----ETVRGVAEMGKSIENITNVISSISE-----QTNLLALNAAIEAA------ 264
K+E E R + E+G+ ++ S+ E + LL + +E A
Sbjct: 406 ARAKVEKQRAELNRELEELGERLDEAGGATSAQIELNKKREAELLKIRRDLEEASLQHEA 465
Query: 265 -------RAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAE 317
+ +A A D+++K+ + +K +D++ + + ++ +++ +
Sbjct: 466 QISALRKKHQDAANEMADQVDQLQKVKSKLEKDKKDLKREMDDLESQMTHNMKNKGCSEK 525
Query: 318 VVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEE 377
V+K + + + L + E++ + S L+ + ++E+ + L+ +
Sbjct: 526 VMKQFESQMSDLNARLEDSQRSINELQSQKSRLQAENSDLTRQLEDAEHRVSVLSKEKSQ 585
Query: 378 TTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKLSK-DHESQVKK 432
++ E+ + EE++ A +L+ V+ + +D + EQ+ + + SK D + Q+ K
Sbjct: 586 LSSQLEDARRSLEEETRARSKLQNEVRNMHADMDAIREQLEEEQESKSDVQRQLSK 641
>pir||S30782 integrin homolog - yeast (Saccharomyces cerevisiae)
Length = 1726
Score = 70.2 bits (169), Expect = 4e-11
Identities = 78/382 (20%), Positives = 166/382 (43%), Gaps = 45/382 (11%)
Query: 52 ETKVKVSAD-IEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRK 110
ETK K + + EY+ + ++ D I K L++ + LS + K G+ K+ + + L +
Sbjct: 747 ETKDKENQTALLEYKSTIHKQEDSI-KTLEKELETILSQKKKAEDGIN-KMGKDLFALSR 804
Query: 111 SISQLVLNIKN-------AAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQE 163
+ + N KN + ++ + TK +KE+I ++ + E + ++ I+
Sbjct: 805 EMQAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEKMKIQCN---- 860
Query: 164 NISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEK 223
N+SK + ISKE V F++ +A+L ++ D E +++
Sbjct: 861 NLSKEKE------HISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKA 914
Query: 224 IEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKL 283
+EE+ E + N+ N I S+S++ + F + I K
Sbjct: 915 VEESKN---ESSIQLSNLQNKIDSMSQEK------------------ENFQIERGSIEKN 953
Query: 284 AEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVK----TSTEVIKESVSYLTQVAEM 339
E+ KK D+ + ++I K S + + ++K T+T E+V+ ++++ +
Sbjct: 954 IEQLKKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENVNKISELTKT 1013
Query: 340 MEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQEL 399
EE+E + + + + K+E + L+ + + E ++ A E L L
Sbjct: 1014 REELEAELAAYKNLKNELETKLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSL 1073
Query: 400 RESVKELDRLVDVLMEQISKFK 421
R +++ L++ + L Q+ K++
Sbjct: 1074 RANLESLEKEHEDLAAQLKKYE 1095
>gb|AAB00143.1| (L03188) putative [Saccharomyces cerevisiae]
Length = 1015
Score = 70.2 bits (169), Expect = 4e-11
Identities = 78/382 (20%), Positives = 166/382 (43%), Gaps = 45/382 (11%)
Query: 52 ETKVKVSAD-IEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRK 110
ETK K + + EY+ + ++ D I K L++ + LS + K G+ K+ + + L +
Sbjct: 36 ETKDKENQTALLEYKSTIHKQEDSI-KTLEKELETILSQKKKAEDGIN-KMGKDLFALSR 93
Query: 111 SISQLVLNIKN-------AAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQE 163
+ + N KN + ++ + TK +KE+I ++ + E + ++ I+
Sbjct: 94 EMQAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEKMKIQCN---- 149
Query: 164 NISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEK 223
N+SK + ISKE V F++ +A+L ++ D E +++
Sbjct: 150 NLSKEKE------HISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKA 203
Query: 224 IEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKL 283
+EE+ E + N+ N I S+S++ + F + I K
Sbjct: 204 VEESKN---ESSIQLSNLQNKIDSMSQEK------------------ENFQIERGSIEKN 242
Query: 284 AEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVK----TSTEVIKESVSYLTQVAEM 339
E+ KK D+ + ++I K S + + ++K T+T E+V+ ++++ +
Sbjct: 243 IEQLKKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENVNKISELTKT 302
Query: 340 MEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQEL 399
EE+E + + + + K+E + L+ + + E ++ A E L L
Sbjct: 303 REELEAELAAYKNLKNELETKLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSL 362
Query: 400 RESVKELDRLVDVLMEQISKFK 421
R +++ L++ + L Q+ K++
Sbjct: 363 RANLESLEKEHEDLAAQLKKYE 384
>pir||S39082 myosin heavy chain, embryonic - chicken (fragment)
Length = 741
Score = 69.9 bits (168), Expect = 5e-11
Identities = 86/408 (21%), Positives = 189/408 (46%), Gaps = 36/408 (8%)
Query: 52 ETKVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKS 111
+ K ++ A +EE E L+ E +I+++ Q +L+ EI A+ + I+ L+++
Sbjct: 340 QEKSEIQAALEEAEASLEHEEGKILRL-----QLELNQVKSEIDRKIAEKDEEIDQLKRN 394
Query: 112 ISQLVLNIKN---AAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENI-SK 167
++V ++++ A I RN +K+ +E + ++ N+V+ EAQ+ N +
Sbjct: 395 HLRIVESLQSSLDAEIRSRNEALRLKKKMEGDLNEMEIQLSHANRVAAEAQKNLRNTQAV 454
Query: 168 MTDTMRYIHD------ISKETVSTMEE----FEASMREMAQLAKEGGEKGRQAADQ-IEE 216
+ DT ++ D + KE V+ +E +A + E+ + A E E+ R+ A+Q + +
Sbjct: 455 LKDTQIHLDDALRTQEVLKEQVAMVERRANLLQAEIEEL-RAALEQTERSRKVAEQELMD 513
Query: 217 ISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVV 276
S ++ + + K +E I S E T A N +A +A A++
Sbjct: 514 ASERVQLLHTQNTSLINTKKKLETDIAQIQSEMEDTIQEARNT---EEKAKKAITDAAMM 570
Query: 277 ADEIRKLAEES---KKAAEDIRELIKQIGDKIGESVEVTQQGA--EVVKTSTEVIK---E 328
A+E++K + S ++ +++ + +K + ++ E+ ++ +G ++ K V + E
Sbjct: 571 AEELKKEQDTSAHLERMKKNLDQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGE 630
Query: 329 SVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLR---FLENLAASAEETTAAAEEV 385
+ + AE ++ + ++E Q E ++ LR ++ L + AEE
Sbjct: 631 VDAEQKRSAEAVKGVRKYERRVKELTYQSEEDLKNILRLQDLVDKLQMKVKSYKRQAEEA 690
Query: 386 SAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKLSKDHESQVKKI 433
+ S ++++ ++E + D+ Q++K ++ K E KKI
Sbjct: 691 EELSNVNLSKFRKIQHELEEAEERADIAESQVNKLRV-KSREFHSKKI 737
>gb|AAC69932.2| (AC005700) putative myosin heavy chain [Arabidopsis thaliana]
Length = 1269
Score = 69.9 bits (168), Expect = 5e-11
Identities = 71/369 (19%), Positives = 167/369 (45%), Gaps = 25/369 (6%)
Query: 50 KGETKVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLR 109
K E K SA + E Q E E++K A KE+ A ++Q I++L
Sbjct: 216 KFEELHKQSASHADSESQKALEFSELLKSTKESA--------KEMEEKMASLQQEIKELN 267
Query: 110 KSISQ---LVLNIKNAAID---VRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQE 163
+ +S+ + +K++A + V+ + K + + V I++++ E ++++
Sbjct: 268 EKMSENEKVEAALKSSAGELAAVQEELALSKSRLLETEQKVSSTEALIDELTQELEQKKA 327
Query: 164 NISKMTDTMRYIHDISKETV---STMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRM 220
+ S+ + + + D+ +T + + E E ++A+ KE + DQ E++
Sbjct: 328 SESRFKEELSVLQDLDAQTKGLQAKLSEQEGINSKLAEELKEKELLESLSKDQEEKLRTA 387
Query: 221 MEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAG--KGFAVVAD 278
EK+ E ++ + ++ +T+ +++++E N L E + + K A+++
Sbjct: 388 NEKLAEVLKEKEALEANVAEVTSNVATVTEVCNELE-----EKLKTSDENFSKTDALLSQ 442
Query: 279 EIRKLAEESKKAAEDIRELIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAE 338
+ +E +K + + EL + G + + + +VV++S++ +E+ S + ++
Sbjct: 443 ALSNNSELEQKL-KSLEELHSEAGSAAAAATQKNLELEDVVRSSSQAAEEAKSQIKELET 501
Query: 339 MMEEMEVKASELREKVIQEGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQE 398
E K +EL +++ K + R L+ L+ + E A E ++ ++ +QE
Sbjct: 502 KFTAAEQKNAELEQQLNLLQLKSSDAERELKELSEKSSELQTAIEVAEEEKKQATTQMQE 561
Query: 399 LRESVKELD 407
++ EL+
Sbjct: 562 YKQKASELE 570
>gb|AAF99315.1|AF272034_1 (AF272034) fast myosin heavy chain isoform 3 [Gallus gallus]
Length = 1941
Score = 69.9 bits (168), Expect = 5e-11
Identities = 86/408 (21%), Positives = 189/408 (46%), Gaps = 36/408 (8%)
Query: 52 ETKVKVSADIEEYEKQLQREIDEIVKILDRIAQGDLSVEDKEIGGMGAKVRQGIEDLRKS 111
+ K ++ A +EE E L+ E +I+++ Q +L+ EI A+ + I+ L+++
Sbjct: 1540 QEKSEIQAALEEAEASLEHEEGKILRL-----QLELNQVKSEIDRKIAEKDEEIDQLKRN 1594
Query: 112 ISQLVLNIKN---AAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENI-SK 167
++V ++++ A I RN +K+ +E + ++ N+V+ EAQ+ N +
Sbjct: 1595 HLRIVESLQSSLDAEIRSRNEALRLKKKMEGDLNEMEIQLSHANRVAAEAQKNLRNTQAV 1654
Query: 168 MTDTMRYIHD------ISKETVSTMEE----FEASMREMAQLAKEGGEKGRQAADQ-IEE 216
+ DT ++ D + KE V+ +E +A + E+ + A E E+ R+ A+Q + +
Sbjct: 1655 LKDTQIHLDDALRTQEVLKEQVAMVERRANLLQAEIEEL-RAALEQTERSRKVAEQELMD 1713
Query: 217 ISRMMEKIEETVRGVAEMGKSIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVV 276
S ++ + + K +E I S E T A N +A +A A++
Sbjct: 1714 ASERVQLLHTQNTSLINTKKKLETDIAQIQSEMEDTIQEARNT---EEKAKKAITDAAMM 1770
Query: 277 ADEIRKLAEES---KKAAEDIRELIKQIGDKIGESVEVTQQGA--EVVKTSTEVIK---E 328
A+E++K + S ++ +++ + +K + ++ E+ ++ +G ++ K V + E
Sbjct: 1771 AEELKKEQDTSAHLERMKKNLDQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1830
Query: 329 SVSYLTQVAEMMEEMEVKASELREKVIQEGEKIEEGLR---FLENLAASAEETTAAAEEV 385
+ + AE ++ + ++E Q E ++ LR ++ L + AEE
Sbjct: 1831 VDAEQKRSAEAVKGVRKYERRVKELTYQSEEDLKNILRLQDLVDKLQMKVKSYKRQAEEA 1890
Query: 386 SAAAEEQSSALQELRESVKELDRLVDVLMEQISKFKLSKDHESQVKKI 433
+ S ++++ ++E + D+ Q++K ++ K E KKI
Sbjct: 1891 EELSNVNLSKFRKIQHELEEAEERADIAESQVNKLRV-KSREFHSKKI 1937
>dbj|BAA34955.1| (AB015485) myosin heavy chain [Dugesia japonica]
Length = 1743
Score = 69.1 bits (166), Expect = 9e-11
Identities = 93/413 (22%), Positives = 184/413 (44%), Gaps = 36/413 (8%)
Query: 45 SYINYKGETKVKVSADIEEYEKQLQREIDEIVKILDRIAQ--GDLSVEDKEIGGMGAKVR 102
S + K + K +D + Q E E+ K L+ LS +++ + +
Sbjct: 1048 SELQNKLDELTKQLSDAGNSNNRNQHENSELHKSLEDAESQINQLSKAKQQLQAQLEEAK 1107
Query: 103 QGIEDLRKSISQLVLNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQ 162
Q +ED ++ S+L +++NA D+ M+E++E+ + V + +V E Q+ +
Sbjct: 1108 QNLEDESRAKSKLNGDLRNALSDL----DAMRESLEEEQEGKSDVQRQLVKVQNELQQLK 1163
Query: 163 ENISKMTDTMRYIHDISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEI-SRMM 221
N S+ T +R S+E MEEF+ M Q +E E + Q+E++ SR+
Sbjct: 1164 SN-SQGTGGVR-----SEE----MEEFKRKMNARIQELEEESESNKSKCSQLEKVKSRLQ 1213
Query: 222 EKIE------ETVRGVA-EMGKSIENITNVI----SSISEQTNLLALNAAIEAARAGEAG 270
+IE E G+A ++ K + + +I SE L ++ + E
Sbjct: 1214 GEIEDLLIDVERANGLASQLEKKQKGVDKLIGEWQKKYSESQQELEVSLRESRTVSAEVF 1273
Query: 271 KGFAVV---ADEIRKLAEESKKAAEDIRELIKQIGD--KIGESVEVTQQGAEVVKTSTE- 324
K +V+ D+I L E+K +++I +L +Q+G+ + +E ++ E+ + +
Sbjct: 1274 KLKSVLENSQDQIESLKRENKNLSDEIHDLTEQLGEGGRNVHEIEKARKRIEIERDELQH 1333
Query: 325 VIKESVSYLTQVAEMMEEMEVKASELREKVIQE-GEKIEEGLRFLENLAASAEETTAAAE 383
++E+ S L Q + +++ S+ R++ + EK EE +N S E A+ E
Sbjct: 1334 ALEEAESALEQEEAKSQRAQLEISQARQEAERRIAEKEEEFEVTRKNHQRSLESMQASLE 1393
Query: 384 EVSAAAEEQSSALQELRESVKELDRLVDVLME-QISKFKLSKDHESQVKKITA 435
E ++L + EL+ +D + + K SK ++ Q+ ++ A
Sbjct: 1394 AEVRGRTEAMKMKKKLEHDINELEVGLDTANRLKSEQEKNSKKYQQQLLEMQA 1446
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.309 0.127 0.313
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120537632
Number of Sequences: 2977
Number of extensions: 4521765
Number of successful extensions: 45691
Number of sequences better than 1.0e-10: 307
Number of HSP's better than 0.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 42176
Number of HSP's gapped (non-prelim): 1089
length of query: 435
length of database: 189,106,746
effective HSP length: 72
effective length of query: 363
effective length of database: 146,015,682
effective search space: 53003692566
effective search space used: 53003692566
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.7 bits)
S2: 166 (69.1 bits)