BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1309 (PAB1309) DE:Hypothetical protein
(394 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75006 hypothetical protein PAB1309 - Pyrococcus abyssi (st... 782 0.0
pir||G71155 hypothetical protein PH0446 - Pyrococcus horikoshii ... 605 e-172
sp|O26521|Y421_METTH HYPOTHETICAL PROTEIN MTH421 >gi|7482559|pir... 130 3e-29
sp|P81324|Y83C_METJA HYPOTHETICAL PROTEIN MJ0835.2 >gi|2826330|g... 78 2e-13
>pir||F75006 hypothetical protein PAB1309 - Pyrococcus abyssi (strain Orsay)
>gi|5459006|emb|CAB50492.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 394
Score = 782 bits (1998), Expect = 0.0
Identities = 394/394 (100%), Positives = 394/394 (100%)
Query: 1 MIPLILGVIVGILTSYTDIKTSYIYEEHFFPSVAIMTKWWCSRKGCEYEAKGPYIPIVEI 60
MIPLILGVIVGILTSYTDIKTSYIYEEHFFPSVAIMTKWWCSRKGCEYEAKGPYIPIVEI
Sbjct: 1 MIPLILGVIVGILTSYTDIKTSYIYEEHFFPSVAIMTKWWCSRKGCEYEAKGPYIPIVEI 60
Query: 61 GILYNLITGIKHGNIVLALSPIIGLIIGLGIGYFLYYTGGWASGDVIILGAYSALLPYVP 120
GILYNLITGIKHGNIVLALSPIIGLIIGLGIGYFLYYTGGWASGDVIILGAYSALLPYVP
Sbjct: 61 GILYNLITGIKHGNIVLALSPIIGLIIGLGIGYFLYYTGGWASGDVIILGAYSALLPYVP 120
Query: 121 DSAKYKPPYSYYLPMNAFTILFNSLLLIFPLILVYSVVGLAVKGKIRELVGVFREGIRNV 180
DSAKYKPPYSYYLPMNAFTILFNSLLLIFPLILVYSVVGLAVKGKIRELVGVFREGIRNV
Sbjct: 121 DSAKYKPPYSYYLPMNAFTILFNSLLLIFPLILVYSVVGLAVKGKIRELVGVFREGIRNV 180
Query: 181 VEVTLWINFGAVLLAFVSLHMSIPKIISWILTFALILIFSRFKLVGDVLGVLSIGYGLYL 240
VEVTLWINFGAVLLAFVSLHMSIPKIISWILTFALILIFSRFKLVGDVLGVLSIGYGLYL
Sbjct: 181 VEVTLWINFGAVLLAFVSLHMSIPKIISWILTFALILIFSRFKLVGDVLGVLSIGYGLYL 240
Query: 241 SGAYYLKLLAKMFLVIYSFKLIWSAVKALRREVLIEERKVSELNPGDVLGERIILTSDGV 300
SGAYYLKLLAKMFLVIYSFKLIWSAVKALRREVLIEERKVSELNPGDVLGERIILTSDGV
Sbjct: 241 SGAYYLKLLAKMFLVIYSFKLIWSAVKALRREVLIEERKVSELNPGDVLGERIILTSDGV 300
Query: 301 VRDRADFFEKISSTLKGEKVESLEGEEIAGFSVEGLTQEQIEKLKALVSEGKLEDEFLVR 360
VRDRADFFEKISSTLKGEKVESLEGEEIAGFSVEGLTQEQIEKLKALVSEGKLEDEFLVR
Sbjct: 301 VRDRADFFEKISSTLKGEKVESLEGEEIAGFSVEGLTQEQIEKLKALVSEGKLEDEFLVR 360
Query: 361 KAMPFAPALFLGFLVSYFFGDILWWLVLKVAGLA 394
KAMPFAPALFLGFLVSYFFGDILWWLVLKVAGLA
Sbjct: 361 KAMPFAPALFLGFLVSYFFGDILWWLVLKVAGLA 394
>pir||G71155 hypothetical protein PH0446 - Pyrococcus horikoshii
>gi|3256849|dbj|BAA29532.1| (AP000002) 394aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 394
Score = 605 bits (1544), Expect = e-172
Identities = 276/394 (70%), Positives = 343/394 (87%)
Query: 1 MIPLILGVIVGILTSYTDIKTSYIYEEHFFPSVAIMTKWWCSRKGCEYEAKGPYIPIVEI 60
MIPLILG IVGILTSYTD+KTSYIYEEHFFP+++I++KWWC RKGCEYE+KGPYIPIVE+
Sbjct: 1 MIPLILGTIVGILTSYTDVKTSYIYEEHFFPTISILSKWWCKRKGCEYESKGPYIPIVEL 60
Query: 61 GILYNLITGIKHGNIVLALSPIIGLIIGLGIGYFLYYTGGWASGDVIILGAYSALLPYVP 120
GILYNL G+K N++ ALSP IGL++G IGYFLYYTGGWASGDVIILGAYSALLP+ P
Sbjct: 61 GILYNLFLGVKGDNLIQALSPFIGLVVGFAIGYFLYYTGGWASGDVIILGAYSALLPFAP 120
Query: 121 DSAKYKPPYSYYLPMNAFTILFNSLLLIFPLILVYSVVGLAVKGKIRELVGVFREGIRNV 180
AKY PPYS YLP+N+ +ILFNS+LLIFPLIL+YS++GLAVKGK R ++ +F+EG+ V
Sbjct: 121 AKAKYAPPYSLYLPLNSLSILFNSILLIFPLILIYSLIGLAVKGKFRSILVLFKEGLGAV 180
Query: 181 VEVTLWINFGAVLLAFVSLHMSIPKIISWILTFALILIFSRFKLVGDVLGVLSIGYGLYL 240
VEVTLW+NF A+L A VS+++ IP+II+ IL F +IL+F +F++VGD+ G+ S+ YGLYL
Sbjct: 181 VEVTLWLNFAAILFALVSIYLPIPRIITLILAFLIILLFGKFRIVGDIAGIASLAYGLYL 240
Query: 241 SGAYYLKLLAKMFLVIYSFKLIWSAVKALRREVLIEERKVSELNPGDVLGERIILTSDGV 300
G YL K+F ++Y+FKL+WS+VKALRREVLI+E+ V EL PGDVLGERI+LT GV
Sbjct: 241 LGIEYLIYFVKLFAIVYTFKLLWSSVKALRREVLIDEKVVEELKPGDVLGERIVLTGSGV 300
Query: 301 VRDRADFFEKISSTLKGEKVESLEGEEIAGFSVEGLTQEQIEKLKALVSEGKLEDEFLVR 360
VRDR+DFF+K+S L+GE+ + ++GEE+AGFSVEGLT+EQIE+LK LV+EGKLE++FLVR
Sbjct: 301 VRDRSDFFDKLSKLLRGERYDQVKGEEVAGFSVEGLTEEQIERLKNLVNEGKLENKFLVR 360
Query: 361 KAMPFAPALFLGFLVSYFFGDILWWLVLKVAGLA 394
KAMPFAPALFLGFL SYFFGD+LWWL+LKV+GLA
Sbjct: 361 KAMPFAPALFLGFLTSYFFGDVLWWLILKVSGLA 394
>sp|O26521|Y421_METTH HYPOTHETICAL PROTEIN MTH421 >gi|7482559|pir||H69154 hypothetical
protein MTH421 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621485|gb|AAB84927.1| (AE000826)
unknown [Methanobacterium thermoautotrophicum]
Length = 385
Score = 130 bits (323), Expect = 3e-29
Identities = 99/341 (29%), Positives = 161/341 (47%), Gaps = 19/341 (5%)
Query: 56 PIVEIGILYNLITGIKHGNIVLALSPIIGLIIGLGIGYFLYYTGGWASGDVIILGAYSAL 115
P++ +G+L N + + + + I +GY L+ WA GDV + A ++L
Sbjct: 38 PVIGLGLLLNGARALMESDPWIFIYTAIFTAGIFALGYILWRMVAWAGGDVKLFTAVTSL 97
Query: 116 LPYVPDSAKYK-------PPYSYYLPMNAFTILFNSLLLIFPLILVYSVVGLAVKGKIRE 168
LP+ P Y SY P+ T++ NS+L + P +LVY V + R
Sbjct: 98 LPFQPSLVSYSFLGTAFPVTASYPFPL---TVIINSILALLPFLLVY--VFFIIYTSRRH 152
Query: 169 LVGVFREGIRN--VVEVTLWINFGAVLLAFVSLHMSIPKII--SWILTFALILIFSRFK- 223
L+ F E +R V + AV L F+ +II S IL + L ++ SR
Sbjct: 153 LMDEFMEPLRQYRTSMVLALVITSAVTLTFLITDFLPFQIIVLSLILVYLLTMVISRLPP 212
Query: 224 LVGDVLGVLSIGYGLYLSGAYYLKLLAKMFLVIYSFKLIWSAVKALRREVLIEERKVSEL 283
+ V+ + I Y LY + + + +++ I +LI + ++ RE L + V EL
Sbjct: 213 RIKAVIVSVIIVYSLYKNFELTVSGVVILWVSITVIQLIRKLLTSITREALQDTMGVDEL 272
Query: 284 NPGDVLGERIILTSDGVVRDRADFFEKISSTLKGEKVESL--EGEEIAGFSVEGLTQEQI 341
G +L + D D + ++ + + V +L GE + GL +E+I
Sbjct: 273 KEGMILASTLYRKGDEYYFDDSSLLDRFRTAARTGDVSALTYRGEPVVSAMAAGLREEEI 332
Query: 342 EKLKALVSEGKLEDEFLVRKAMPFAPALFLGFLVSYFFGDI 382
E L+ LVS GK++DEF +R+ MPFAPA+F+G LVS GD+
Sbjct: 333 ETLRDLVSRGKIKDEFRIRRGMPFAPAIFIGLLVSLLIGDL 373
>sp|P81324|Y83C_METJA HYPOTHETICAL PROTEIN MJ0835.2 >gi|2826330|gb|AAB98835.1| (U67527)
conserved hypothetical protein [Methanococcus
jannaschii]
Length = 339
Score = 77.6 bits (188), Expect = 2e-13
Identities = 82/328 (25%), Positives = 148/328 (45%), Gaps = 49/328 (14%)
Query: 62 ILYNLITGIKHG--NIVLAL--SPIIGLIIGLGIGYFLYYTGGWASGDVIILGAYSALLP 117
I+ NL+ G + N ++A + I+ LI+ +G+G GDV + A + +
Sbjct: 37 IIINLVVGYYYFGFNAIIAFFSTLILCLILSIGMG----------GGDVKLFTALAPIFA 86
Query: 118 YVPDSAKYKPPYSYYLPMNAFTILFNSLLLIFPLILVYSVVGLAVKGKIRELVGVFREGI 177
Y Y P Y YL + I +FP+ + L+ +++ I
Sbjct: 87 YPNSFVFYIPKYILYLIAISMFIA-----AVFPMYKI--------------LMRYWKDII 127
Query: 178 RNVVEVTLWINFGAVLLAFVSLHMSIPKIISWILTFALILIF-----SRFKLVGDVLGVL 232
+ +T+ + +L F++++ IP I + ++ IF ++K LG L
Sbjct: 128 PSACYLTMMLG---ILYYFINIY-EIPYASIIIWAYIVLSIFVSRKVPKYKEYTKKLGYL 183
Query: 233 SIGYGLYL---SGAYYLKLLAKMFLVIYSFKLIWSAVK--ALRREVLIEERKVSELNPGD 287
Y L+L Y++K + +IY ++I ++ AL +++ + EL GD
Sbjct: 184 FPAYLLFLYIIDTTYFIKYNVLLTSIIYLCEIILISIVIYALTGVETSDKKHIEELKEGD 243
Query: 288 VLGERIILTSDGVVRDRADFFEKISSTLKGEKVESLEGEEIAGFSVEGLTQEQIEKLKAL 347
+L + II+ DGV + ++I L+ E E+ +EI EGL+ E I K+K L
Sbjct: 244 ILRDVIIIDKDGVEVKNLNIMKRIKFLLEHEIKEN--EKEIILTDGEGLSNEDIRKIKKL 301
Query: 348 VSEGKLEDEFLVRKAMPFAPALFLGFLV 375
EGK+ D+ V K PF P + +G+++
Sbjct: 302 YMEGKIPDKLNVIKTYPFVPFVVIGYVI 329
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.326 0.146 0.437
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146858114
Number of Sequences: 2977
Number of extensions: 6443098
Number of successful extensions: 23425
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23418
Number of HSP's gapped (non-prelim): 5
length of query: 394
length of database: 189,106,746
effective HSP length: 52
effective length of query: 342
effective length of database: 157,985,422
effective search space: 54031014324
effective search space used: 54031014324
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 166 (69.1 bits)