BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1310 (PAB1310) DE:Hypothetical protein
         (113 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75006 hypothetical protein PAB1310 - Pyrococcus abyssi (st...   233  5e-61
pir||H71155 hypothetical protein PH0447 - Pyrococcus horikoshii ...   213  7e-55
pir||H71142 hypothetical protein PH0355 - Pyrococcus horikoshii ...    75  2e-13
pir||G75009 hypothetical protein PAB1060 - Pyrococcus abyssi (st...    69  1e-11
gb|AAF01598.1|AC009895_19 (AC009895) unknown protein [Arabidopsi...    69  2e-11

>pir||E75006 hypothetical protein PAB1310 - Pyrococcus abyssi (strain Orsay)
           >gi|5459005|emb|CAB50491.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 113
           
 Score =  233 bits (588), Expect = 5e-61
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MRVYRLYLRDEYLEMVKSGKKKIEVRVAYPQLRGIKKGDKIIFNDMIPAEVIDVKRYETF 60
           MRVYRLYLRDEYLEMVKSGKKKIEVRVAYPQLRGIKKGDKIIFNDMIPAEVIDVKRYETF
Sbjct: 1   MRVYRLYLRDEYLEMVKSGKKKIEVRVAYPQLRGIKKGDKIIFNDMIPAEVIDVKRYETF 60

Query: 61  RQVLREEPIEKIFPDEPSFERALRRFHNMYPKWKEYRYGVIAIKFRILGRERK 113
           RQVLREEPIEKIFPDEPSFERALRRFHNMYPKWKEYRYGVIAIKFRILGRERK
Sbjct: 61  RQVLREEPIEKIFPDEPSFERALRRFHNMYPKWKEYRYGVIAIKFRILGRERK 113


>pir||H71155 hypothetical protein PH0447 - Pyrococcus horikoshii
           >gi|3256850|dbj|BAA29533.1| (AP000002) 114aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 114
           
 Score =  213 bits (536), Expect = 7e-55
 Identities = 99/113 (87%), Positives = 110/113 (96%)

Query: 1   MRVYRLYLRDEYLEMVKSGKKKIEVRVAYPQLRGIKKGDKIIFNDMIPAEVIDVKRYETF 60
           M+VYRLYLRDEYLEMVKSGKK+IEVRVAYPQL+G+K+GDKIIFND +PAEVI+VK YETF
Sbjct: 2   MKVYRLYLRDEYLEMVKSGKKRIEVRVAYPQLKGMKRGDKIIFNDEVPAEVIEVKHYETF 61

Query: 61  RQVLREEPIEKIFPDEPSFERALRRFHNMYPKWKEYRYGVIAIKFRILGRERK 113
           RQVLREEPI+KIFPDEPSFERALRRFHN+YPKWKE RYGVIAIKF++LGRERK
Sbjct: 62  RQVLREEPIDKIFPDEPSFERALRRFHNLYPKWKENRYGVIAIKFKLLGRERK 114


>pir||H71142 hypothetical protein PH0355 - Pyrococcus horikoshii
           >gi|3256746|dbj|BAA29429.1| (AP000002) 109aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 109
           
 Score = 75.3 bits (182), Expect = 2e-13
 Identities = 37/102 (36%), Positives = 65/102 (63%), Gaps = 1/102 (0%)

Query: 4   YRLYLRDEYLEMVKSGKKKIEVRVAYPQLRGIKKGDKIIF-NDMIPAEVIDVKRYETFRQ 62
           + + L++EY+E++K+GKKKIE R+   + R IK GD IIF    +  +V  ++ Y +F++
Sbjct: 3   WEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSFKE 62

Query: 63  VLREEPIEKIFPDEPSFERALRRFHNMYPKWKEYRYGVIAIK 104
           +L +E IE + P   S E  ++ +   Y + +E +YGV+AI+
Sbjct: 63  MLEKEGIENVLPGVKSIEEGVKVYRQFYDEEREKKYGVVAIE 104


>pir||G75009 hypothetical protein PAB1060 - Pyrococcus abyssi (strain Orsay)
           >gi|5459031|emb|CAB50517.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 111
           
 Score = 69.5 bits (167), Expect = 1e-11
 Identities = 35/102 (34%), Positives = 63/102 (61%), Gaps = 1/102 (0%)

Query: 4   YRLYLRDEYLEMVKSGKKKIEVRVAYPQLRGIKKGDKIIFND-MIPAEVIDVKRYETFRQ 62
           + + L++EY+E++K G KKIE R+   + R IK GD I+F    +   V  ++ Y++F++
Sbjct: 3   WEMGLQEEYIELIKRGLKKIEGRLYDEKRRKIKPGDIIVFEGGKLKVRVKALRVYKSFKE 62

Query: 63  VLREEPIEKIFPDEPSFERALRRFHNMYPKWKEYRYGVIAIK 104
           +L +E IE + P   S E  ++ +   Y + +E +YGV+AI+
Sbjct: 63  MLEKEGIENVLPGVNSVEEGVKIYRKFYDEEREKKYGVVAIE 104


>gb|AAF01598.1|AC009895_19 (AC009895) unknown protein [Arabidopsis thaliana]
           Length = 244
           
 Score = 69.1 bits (166), Expect = 2e-11
 Identities = 34/101 (33%), Positives = 56/101 (54%)

Query: 4   YRLYLRDEYLEMVKSGKKKIEVRVAYPQLRGIKKGDKIIFNDMIPAEVIDVKRYETFRQV 63
           + L++++ Y   +K G K +E R A      I  GD ++FN  +  EV DV RY +F ++
Sbjct: 107 FELHVQEPYFTQLKDGLKTVEGRCAVGDYMRISSGDFLLFNKCLLLEVQDVHRYTSFSEM 166

Query: 64  LREEPIEKIFPDEPSFERALRRFHNMYPKWKEYRYGVIAIK 104
           L+ E + K+ P   S E  ++ + N Y + KE   GV+AI+
Sbjct: 167 LKVEGLAKVLPGVESIEEGVQVYRNFYSEEKERMNGVVAIR 207


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.146    0.427 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41249524
Number of Sequences: 2977
Number of extensions: 1553308
Number of successful extensions: 4703
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4698
Number of HSP's gapped (non-prelim): 5
length of query: 113
length of database: 189,106,746
effective HSP length: 49
effective length of query: 64
effective length of database: 159,780,883
effective search space: 10225976512
effective search space used: 10225976512
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 160 (66.7 bits)