BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1311 (PAB1311) DE:Hypothetical protein
(190 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75006 hypothetical protein PAB1311 - Pyrococcus abyssi (st... 377 e-104
pir||A71156 hypothetical protein PH0448 - Pyrococcus horikoshii ... 348 3e-95
gi|11499400 A. fulgidus predicted coding region AF1812 [Archaeog... 145 3e-34
pir||A72766 hypothetical protein APE0116 - Aeropyrum pernix (str... 121 7e-27
pir||H71045 hypothetical protein PH1656 - Pyrococcus horikoshii ... 101 5e-21
pir||D75169 hypothetical protein PAB2020 - Pyrococcus abyssi (st... 99 2e-20
gi|11499118 A. fulgidus predicted coding region AF1523 [Archaeog... 86 3e-16
>pir||D75006 hypothetical protein PAB1311 - Pyrococcus abyssi (strain Orsay)
>gi|5459004|emb|CAB50490.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 190
Score = 377 bits (957), Expect = e-104
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MKNLKFDGRYKDDIISGKKRATIRLGRKVNFKPGEEVLIHSGGYVLGKARIKSVVTKKVA 60
MKNLKFDGRYKDDIISGKKRATIRLGRKVNFKPGEEVLIHSGGYVLGKARIKSVVTKKVA
Sbjct: 1 MKNLKFDGRYKDDIISGKKRATIRLGRKVNFKPGEEVLIHSGGYVLGKARIKSVVTKKVA 60
Query: 61 ELTDEDARKDGFRNREELLEALRQHYKFVKPDSPATIVEFEIIKLLDKPILSADYPYEGN 120
ELTDEDARKDGFRNREELLEALRQHYKFVKPDSPATIVEFEIIKLLDKPILSADYPYEGN
Sbjct: 61 ELTDEDARKDGFRNREELLEALRQHYKFVKPDSPATIVEFEIIKLLDKPILSADYPYEGN 120
Query: 121 NPIEIAELALKHLDNLSFEDIALLKLFLREGSLRKAAMKLGGLNKRYKIREVLRKAYEEL 180
NPIEIAELALKHLDNLSFEDIALLKLFLREGSLRKAAMKLGGLNKRYKIREVLRKAYEEL
Sbjct: 121 NPIEIAELALKHLDNLSFEDIALLKLFLREGSLRKAAMKLGGLNKRYKIREVLRKAYEEL 180
Query: 181 KKRGIMKPKI 190
KKRGIMKPKI
Sbjct: 181 KKRGIMKPKI 190
>pir||A71156 hypothetical protein PH0448 - Pyrococcus horikoshii
>gi|3256851|dbj|BAA29534.1| (AP000002) 211aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 211
Score = 348 bits (883), Expect = 3e-95
Identities = 170/190 (89%), Positives = 185/190 (96%)
Query: 1 MKNLKFDGRYKDDIISGKKRATIRLGRKVNFKPGEEVLIHSGGYVLGKARIKSVVTKKVA 60
+KNLKFDGRYKDDIISGKK+ATIRLGRKVN KPGEEVLIH+GGYVLGKARI V TKKV+
Sbjct: 22 VKNLKFDGRYKDDIISGKKKATIRLGRKVNLKPGEEVLIHAGGYVLGKARITRVTTKKVS 81
Query: 61 ELTDEDARKDGFRNREELLEALRQHYKFVKPDSPATIVEFEIIKLLDKPILSADYPYEGN 120
ELTDEDARKDGF++REELLEALR+HYKFVKPDSPATIVEFE++ +LDKPILSADYPYEGN
Sbjct: 82 ELTDEDARKDGFKSREELLEALREHYKFVKPDSPATIVEFEMLSVLDKPILSADYPYEGN 141
Query: 121 NPIEIAELALKHLDNLSFEDIALLKLFLREGSLRKAAMKLGGLNKRYKIREVLRKAYEEL 180
NPIEIAELAL+HLDNLSFE++ALLKLFL+EGSLRKAAMKLGGLNKRYKIREVLRKAYEEL
Sbjct: 142 NPIEIAELALEHLDNLSFEEVALLKLFLKEGSLRKAAMKLGGLNKRYKIREVLRKAYEEL 201
Query: 181 KKRGIMKPKI 190
KKRGIM+PKI
Sbjct: 202 KKRGIMQPKI 211
>gi|11499400 A. fulgidus predicted coding region AF1812 [Archaeoglobus fulgidus]
>gi|7483710|pir||C69476 hypothetical protein AF1812 -
Archaeoglobus fulgidus >gi|2648748|gb|AAB89451.1|
(AE000978) A. fulgidus predicted coding region AF1812
[Archaeoglobus fulgidus]
Length = 177
Score = 145 bits (362), Expect = 3e-34
Identities = 84/187 (44%), Positives = 123/187 (64%), Gaps = 11/187 (5%)
Query: 1 MKNLKFDGRYKDDIISGKKRATIRLGRKVNFKPGEEVLIHSGGYVLGKARIKSVVTKKVA 60
MK+L+F G+Y +I G+KR TIR + N K G+EVL+HSGG ++GKA+IK++ + V+
Sbjct: 1 MKHLEFKGKYAKALIEGRKRLTIR--KWTNLKEGDEVLVHSGGKIIGKAKIKAIKKRHVS 58
Query: 61 ELTDEDARKDGFRNREELLEALRQHYKFVKPDSPATIVEFEIIKLLDKPILSADYPYEGN 120
E+TDE+AR DGFRN EEL+E +++ + D ++ F+ L ++ Y G+
Sbjct: 59 EITDEEARLDGFRNAEELMEEMKK----MGYDGEVYVIHFDFEPL---QAVNPHKLYYGD 111
Query: 121 NPI-EIAELALKHLDNLSFEDIALLKLFLREGSLRKAAMKLGGLNKRYKIREVLRKAYEE 179
+ EIA +L+HL+ L D +L+ FL GS+RKAA KLGG KR +IR+VLRK Y E
Sbjct: 112 ADLEEIARRSLEHLE-LDERDRLVLETFLSYGSIRKAARKLGGARKRGEIRKVLRKCYNE 170
Query: 180 LKKRGIM 186
L KRG++
Sbjct: 171 LVKRGLI 177
>pir||A72766 hypothetical protein APE0116 - Aeropyrum pernix (strain K1)
>gi|5103506|dbj|BAA79027.1| (AP000058) 202aa long
hypothetical protein [Aeropyrum pernix]
Length = 202
Score = 121 bits (300), Expect = 7e-27
Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 9/190 (4%)
Query: 2 KNLKFDGRYKDDIISGKKRATIRLGRKVNFKPG-EEVLIHSGGYVLGKARIKSVVTKKVA 60
+++ G Y D ++ G+K TIRLG KP EV+IH G L KA I V KKV+
Sbjct: 15 RHIMIKGVYADKLLEGRKTTTIRLGI---VKPRYREVIIHGHGRPLAKAEIVDVHVKKVS 71
Query: 61 ELTDEDARKDGFRNREELLEALRQHYKF-VKPDSPATIVEFEIIKLLDKPILSADYPYEG 119
ELT EDAR+DGFR+ EL+E+L + Y + + P+ TI+ + + D L PY G
Sbjct: 72 ELTLEDARRDGFRSVRELIESLERVYGYKLDPEDAVTIIHLRVKQRFDN--LDLSDPYLG 129
Query: 120 NNPIEIAELALKHL-DNLSFEDIALLKLFLREGSLRKAAMKL-GGLNKRYKIREVLRKAY 177
P +IA L L++L D+LS E+ +L+ R S+R A++L G + +R ++R VLR+
Sbjct: 130 LEPADIARLGLRYLGDSLSDEEKRVLEDLTRTNSIRATAVRLYGSIERRGRVRRVLRRVL 189
Query: 178 EELKKRGIMK 187
+EL +RG++K
Sbjct: 190 QELLRRGLIK 199
>pir||H71045 hypothetical protein PH1656 - Pyrococcus horikoshii
>gi|3258085|dbj|BAA30768.1| (AP000006) 191aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 191
Score = 101 bits (250), Expect = 5e-21
Identities = 72/189 (38%), Positives = 105/189 (55%), Gaps = 9/189 (4%)
Query: 2 KNLKFDGRYKDDIISGKKRATIRLGRKVNFKPGEEV--LIHSGGYVLGKARIKSVVTKKV 59
K + D +YK +ISGKK TIR G K KPG EV +I + KA+IK + TKKV
Sbjct: 8 KFILLDNKYKSKVISGKKVTTIRFG-KYEAKPGTEVYIVITPSDTAIAKAKIKGIRTKKV 66
Query: 60 AELTDEDARKDGFRNREELLEALRQHYKFVKPDSPATIVEFEIIKLLDKPI-LSADYPYE 118
ELT EDA+ DGF + +EL+ L + Y + + TI+EFE ++ L + I L
Sbjct: 67 KELTIEDAKLDGFSDVKELVRELSRIYGELHGEDEVTIIEFEDVEPLKEGIPLKLLKGLN 126
Query: 119 GNNPIEIAELALKHLDNLSF-EDIALLKLFLREGSLRKAAMKLGGLNKRYKIREVLRKAY 177
+P IAELAL++ L+ ED L+ + + LR+AA + G ++++ L KAY
Sbjct: 127 YRDPYRIAELALENFKELNLSEDTKLILSKVVQNGLREAAKRFG----PKRLQQALLKAY 182
Query: 178 EELKKRGIM 186
L + GI+
Sbjct: 183 HSLYEEGII 191
>pir||D75169 hypothetical protein PAB2020 - Pyrococcus abyssi (strain Orsay)
>gi|5457945|emb|CAB49435.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 191
Score = 99.5 bits (244), Expect = 2e-20
Identities = 70/189 (37%), Positives = 104/189 (54%), Gaps = 9/189 (4%)
Query: 2 KNLKFDGRYKDDIISGKKRATIRLGRKVNFKPGEEV--LIHSGGYVLGKARIKSVVTKKV 59
K + D +YK II G+K TIR G K KPG EV +I + KA+IK + TKKV
Sbjct: 8 KFILLDNKYKSKIIKGEKVTTIRFG-KYEAKPGSEVYIVITPSDTAIAKAKIKGIKTKKV 66
Query: 60 AELTDEDARKDGFRNREELLEALRQHYKFVKPDSPATIVEFEIIKLLDKPI-LSADYPYE 118
ELT+EDAR DGF + +EL+ L + Y + + TI+EFE +K L + I L
Sbjct: 67 KELTNEDARLDGFSDVKELVRELSRIYGELYGEDEVTIIEFEDVKPLKEGIPLKWLKGLN 126
Query: 119 GNNPIEIAELALKHLDNLSF-EDIALLKLFLREGSLRKAAMKLGGLNKRYKIREVLRKAY 177
+P EIA L +++ D+ + ED+ ++ + E LR + G ++++ L KAY
Sbjct: 127 YRDPYEIARLCIENFDSSALSEDVKVILSRVIEDGLRDTVKRYG----PKRVQQALLKAY 182
Query: 178 EELKKRGIM 186
L +RGI+
Sbjct: 183 HFLYERGII 191
>gi|11499118 A. fulgidus predicted coding region AF1523 [Archaeoglobus fulgidus]
>gi|7483652|pir||B69440 hypothetical protein AF1523 -
Archaeoglobus fulgidus >gi|2649049|gb|AAB89733.1|
(AE000997) A. fulgidus predicted coding region AF1523
[Archaeoglobus fulgidus]
Length = 103
Score = 85.8 bits (209), Expect = 3e-16
Identities = 43/104 (41%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 1 MKNLKFDGRYKDDIISGKKRATIRLGRKVNFKPGEEVLIHSGGYVLGKARIKSVVTKKVA 60
M+ + FD + + II+G+K T+R G K ++ G V + + G A++K VV K+V
Sbjct: 1 MERINFDSEFVERIINGEKITTVRRGIK-SYPVGRIVELTANGERFALAKVKKVVVKRVR 59
Query: 61 ELTDEDARKDGFRNREELLEALRQHYKFVKPDSPATIVEFEIIK 104
ELTDEDA +DGF++REEL+ AL++ Y ++ D T+V FE++K
Sbjct: 60 ELTDEDAIRDGFKSREELISALKRIYGDIRDDEFVTVVHFEVVK 103
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.385
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68665993
Number of Sequences: 2977
Number of extensions: 2789431
Number of successful extensions: 7946
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7933
Number of HSP's gapped (non-prelim): 7
length of query: 190
length of database: 189,106,746
effective HSP length: 56
effective length of query: 134
effective length of database: 155,591,474
effective search space: 20849257516
effective search space used: 20849257516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)