BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1312 (RAD25) DE:DNA repair protein RAD25
(453 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75006 DNA repair protein rad25 PAB1312 - Pyrococcus abyssi... 897 0.0
pir||C71156 probable helicase protein PH0450 - Pyrococcus horiko... 785 0.0
gi|11497970 DNA repair protein RAD25 [Archaeoglobus fulgidus] >g... 535 e-151
gb|AAK40796.1| DNA repair protein rad25 [Sulfolobus solfataricus] 409 e-113
gi|10803640 ORF H1047 [Halobacterium sp. NRC-1] >gi|7446116|pir|... 367 e-100
emb|CAC12145.1| (AL445066) DNA repair protein RAD25 related prot... 337 2e-91
gb|AAF69763.1| (AF068771) similar to RAD25 [Synechocystis PCC9413] 295 7e-79
pir||B72707 hypothetical protein APE1073 - Aeropyrum pernix (str... 276 4e-73
gb|AAK41233.1| DNA repair protein rad25 [Sulfolobus solfataricus] 273 2e-72
pir||E70815 hypothetical protein Rv0861c - Mycobacterium tubercu... 160 3e-38
pir||F71330 probable DNA repair helicase - syphilis spirochete >... 153 5e-36
pir||H71243 probable helicase protein PH0210 - Pyrococcus horiko... 129 5e-29
gb|AAC49987.1| (U29168) putative DNA repair protein and transcri... 127 3e-28
gb|AAG27465.1|AF308595_1 (AF308595) putative DNA repair protein ... 127 3e-28
dbj|BAB08508.1| (AB006707) DNA excision repair cross-complementi... 127 3e-28
pir||A75209 DNA repair protein rad25 PAB0128 - Pyrococcus abyssi... 124 2e-27
pir||S71206 DNA excision repair cross-complementing protein ERCC... 124 2e-27
gb|AAG19725.1| (AE005058) putative DNA helicase; Rhl [Halobacter... 119 7e-26
gb|AAB62732.1| (U77065) RepB [Dictyostelium discoideum] 116 5e-25
gi|4557563 excision repair cross-complementing rodent repair def... 113 6e-24
sp|P49135|XPB_MOUSE DNA-REPAIR PROTEIN COMPLEMENTING XP-B CELLS ... 112 7e-24
pir||T31655 DNA excision repair cross-complementing protein - se... 110 4e-23
sp|Q02870|XPB_DROME DNA EXCISION REPAIR PROTEIN HAYWIRE (ERCC-3 ... 109 6e-23
gb|AAF50150.1| (AE003547) hay gene product [Drosophila melanogas... 109 6e-23
pir||A44223 DNA excision repair cross-complementing protein ERCC... 109 8e-23
emb|CAA76655.1| (Y17148) XPB protein [Geodia cydonium] 109 8e-23
gb|AAA34942.1| (L01414) DNA helicase [Saccharomyces cerevisiae] 108 1e-22
gi|6322048 DNA helicase homolog; homolog of human XPBC, ERCC3; S... 108 1e-22
gb|AAA74931.1| (L02965) helicase [Drosophila melanogaster] 105 1e-21
pir||T37821 probable dna repair helicase - fission yeast (Schiz... 102 6e-21
gi|11429283 excision repair cross-complementing rodent repair de... 78 2e-13
emb|CAA67095.1| (X98455) SNF [Bacillus cereus] 71 2e-11
gi|6320539 Ydr332wp [Saccharomyces cerevisiae] >gi|2131433|pir||... 71 2e-11
pir||E71481 probable swf/snf helicase - Chlamydia trachomatis (s... 71 3e-11
emb|CAB93078.1| (AL357432) putative helicase (fragment) [Strepto... 69 1e-10
>pir||B75006 DNA repair protein rad25 PAB1312 - Pyrococcus abyssi (strain Orsay)
>gi|5459002|emb|CAB50488.1| (AJ248288) DNA repair
protein RAD25 [Pyrococcus abyssi]
Length = 453
Score = 897 bits (2294), Expect = 0.0
Identities = 453/453 (100%), Positives = 453/453 (100%)
Query: 1 MKLYYDRGTIKVIGNSYVPYARWDERCRCYRALAYKYRDIVEFLESEGIEFEDYVLENAL 60
MKLYYDRGTIKVIGNSYVPYARWDERCRCYRALAYKYRDIVEFLESEGIEFEDYVLENAL
Sbjct: 1 MKLYYDRGTIKVIGNSYVPYARWDERCRCYRALAYKYRDIVEFLESEGIEFEDYVLENAL 60
Query: 61 PSRVYDDVEFELRDYQEEAVERWMREKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPT 120
PSRVYDDVEFELRDYQEEAVERWMREKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPT
Sbjct: 61 PSRVYDDVEFELRDYQEEAVERWMREKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPT 120
Query: 121 LALLEQWKERLEIFGDVGEFSGRKKELKPITVTTYDSAYINAEFLGDKFFLLIFDECHHL 180
LALLEQWKERLEIFGDVGEFSGRKKELKPITVTTYDSAYINAEFLGDKFFLLIFDECHHL
Sbjct: 121 LALLEQWKERLEIFGDVGEFSGRKKELKPITVTTYDSAYINAEFLGDKFFLLIFDECHHL 180
Query: 181 PSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPRELMGTYLAPYEL 240
PSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPRELMGTYLAPYEL
Sbjct: 181 PSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPRELMGTYLAPYEL 240
Query: 241 VRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALE 300
VRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALE
Sbjct: 241 VRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALE 300
Query: 301 EARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLIPAITHKTSKEERV 360
EARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLIPAITHKTSKEERV
Sbjct: 301 EARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLIPAITHKTSKEERV 360
Query: 361 EILRKFREGKYMAVVSSQVLDEGIDVPDASVGIIISGTGSPRELVQRLGRILRPAPGKER 420
EILRKFREGKYMAVVSSQVLDEGIDVPDASVGIIISGTGSPRELVQRLGRILRPAPGKER
Sbjct: 361 EILRKFREGKYMAVVSSQVLDEGIDVPDASVGIIISGTGSPRELVQRLGRILRPAPGKER 420
Query: 421 AILYELITPGTTEVRISSRRLSGIKKLESLDDL 453
AILYELITPGTTEVRISSRRLSGIKKLESLDDL
Sbjct: 421 AILYELITPGTTEVRISSRRLSGIKKLESLDDL 453
>pir||C71156 probable helicase protein PH0450 - Pyrococcus horikoshii
>gi|3256853|dbj|BAA29536.1| (AP000002) 449aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 449
Score = 785 bits (2006), Expect = 0.0
Identities = 378/447 (84%), Positives = 422/447 (93%)
Query: 1 MKLYYDRGTIKVIGNSYVPYARWDERCRCYRALAYKYRDIVEFLESEGIEFEDYVLENAL 60
MKLYYDRGTIK+IG+SYVP+ARWDERC CYRALAYKYRDIVEFL+SEG++FED+VL+N +
Sbjct: 1 MKLYYDRGTIKIIGSSYVPFARWDERCNCYRALAYKYRDIVEFLKSEGVDFEDHVLDNVI 60
Query: 61 PSRVYDDVEFELRDYQEEAVERWMREKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPT 120
PS Y+DVEFELRDYQ EAVERWM EKRG+IVLPTG+GKTI+AMEI++RLS+STLV+VPT
Sbjct: 61 PSPFYEDVEFELRDYQREAVERWMMEKRGIIVLPTGSGKTIIAMEIMRRLSVSTLVVVPT 120
Query: 121 LALLEQWKERLEIFGDVGEFSGRKKELKPITVTTYDSAYINAEFLGDKFFLLIFDECHHL 180
LALLEQWKERL IFG+VGEFSG+KKELKPITVTTYDSAYINAE LGDKF L+IFDECHHL
Sbjct: 121 LALLEQWKERLSIFGEVGEFSGKKKELKPITVTTYDSAYINAELLGDKFMLIIFDECHHL 180
Query: 181 PSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPRELMGTYLAPYEL 240
P+EAYRNIAQMS APYRLGLTAFPER+DNLH+LLPDLIGP+VYKK P EL+GTYLAPYE+
Sbjct: 181 PAEAYRNIAQMSVAPYRLGLTAFPERSDNLHELLPDLIGPVVYKKGPGELIGTYLAPYEI 240
Query: 241 VRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALE 300
VR+KVPLSREER EY K+Y +FKRYL ESG+ IKSLEDFQ+IVM+TG+DNKAFKALRALE
Sbjct: 241 VRIKVPLSREEREEYKKYYGIFKRYLEESGIEIKSLEDFQRIVMKTGMDNKAFKALRALE 300
Query: 301 EARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLIPAITHKTSKEERV 360
++RKIALGSK KIEELRKILERHRGEKIII TRYNELVYEISRKFLIPAITHKT K+ER
Sbjct: 301 KSRKIALGSKGKIEELRKILERHRGEKIIIFTRYNELVYEISRKFLIPAITHKTDKKERS 360
Query: 361 EILRKFREGKYMAVVSSQVLDEGIDVPDASVGIIISGTGSPRELVQRLGRILRPAPGKER 420
EIL+KFR+G Y AVVSSQVLDEGIDVPDASVG+IISGTGSPREL+QRLGRILR APGKE+
Sbjct: 361 EILKKFRKGIYKAVVSSQVLDEGIDVPDASVGVIISGTGSPRELIQRLGRILRSAPGKEK 420
Query: 421 AILYELITPGTTEVRISSRRLSGIKKL 447
AILYEL+TPGT EVRI+SRRLSG+KKL
Sbjct: 421 AILYELVTPGTAEVRIASRRLSGLKKL 447
>gi|11497970 DNA repair protein RAD25 [Archaeoglobus fulgidus]
>gi|7446073|pir||F69294 DNA repair protein RAD25 homolog
- Archaeoglobus fulgidus >gi|2650278|gb|AAB90879.1|
(AE001080) DNA repair protein RAD25 [Archaeoglobus
fulgidus]
Length = 452
Score = 535 bits (1363), Expect = e-151
Identities = 271/446 (60%), Positives = 347/446 (77%), Gaps = 4/446 (0%)
Query: 2 KLYYDRGTIKVIGNSYVPYARWDERCRCYRALAYKYRDIVEFLESEGIEFEDYVLENALP 61
++YY+RGTI V G+++VP+A++D R YRALA++YRDI+E+ ES GIEF D + +P
Sbjct: 6 EIYYERGTIVVKGDAHVPHAKFDSRSGTYRALAFRYRDIIEYFESNGIEFVDNAAD-PIP 64
Query: 62 SRVYDDVEFELRDYQEEAVERWMREKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTL 121
+ Y D E LRDYQE+A+ERW+ +KRG IVLPTG+GKT VAM I LS TL++VPTL
Sbjct: 65 TP-YFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTL 123
Query: 122 ALLEQWKERLEIFGD--VGEFSGRKKELKPITVTTYDSAYINAEFLGDKFFLLIFDECHH 179
AL EQWKERL IFG+ VGEFSGR KELKP+TV+TYDSAY+NAE LG++F LLIFDE HH
Sbjct: 124 ALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHH 183
Query: 180 LPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPRELMGTYLAPYE 239
LP+E+Y IAQMS AP+RLGLTA ER D H++L +++G V++ P L G +LA Y
Sbjct: 184 LPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYT 243
Query: 240 LVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRAL 299
+ R+ VPL+ +ER EY K KV+K++L G+ ++ EDF KIVM +G D +A++ALRA
Sbjct: 244 IKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAW 303
Query: 300 EEARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLIPAITHKTSKEER 359
EEAR+IA SK KI +LR+ILERHR +KIII TR+NELVY IS+ FLIPAITH+TS+EER
Sbjct: 304 EEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREER 363
Query: 360 VEILRKFREGKYMAVVSSQVLDEGIDVPDASVGIIISGTGSPRELVQRLGRILRPAPGKE 419
EIL FR G++ A+VSSQVLDEGIDVPDA+VG+I+SG+GS RE +QRLGRILRP+ GK+
Sbjct: 364 EEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKK 423
Query: 420 RAILYELITPGTTEVRISSRRLSGIK 445
A+LYELI+ GT EV + RR + K
Sbjct: 424 EAVLYELISRGTGEVNTARRRKNAAK 449
>gb|AAK40796.1| DNA repair protein rad25 [Sulfolobus solfataricus]
Length = 444
Score = 409 bits (1041), Expect = e-113
Identities = 212/424 (50%), Positives = 293/424 (69%), Gaps = 5/424 (1%)
Query: 19 PYARWDERCRCYRALAYKYRDIVEFLESEGIEFEDYVLENALPSRVYDDVEFELRDYQEE 78
P W++ +CY A KYR+++ + + +E ED VLE LP + D +LR+YQ+E
Sbjct: 18 PGLSWNDEFKCYIGQANKYREVLYYYKRSHVEVEDSVLE-LLPFPLIVD-RIKLREYQQE 75
Query: 79 AVERWMREKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWKERL-EIFG-D 136
A+ W++ K G+IV+PTG GKT++ ++ I + L+TL+IVPT+ LL+QW E + E+ G +
Sbjct: 76 ALNAWLKSKLGIIVIPTGGGKTVIGLKAIALIRLATLIIVPTIDLLQQWYENIRELLGVE 135
Query: 137 VGEFSGRKKELKPITVTTYDSAYINAEFLGDKFFLLIFDECHHLPSEAYRNIAQMSAAPY 196
G G ELK ITV TYDSAY E +G+KF L+IFDE HHLPSE Y IAQ AAPY
Sbjct: 136 AGRVGGGYDELKGITVITYDSAYTQLEKIGNKFGLVIFDEVHHLPSEGYSIIAQGLAAPY 195
Query: 197 RLGLTAFPERADNLHDLLPDLIGPIVYKKAPRELMGTYLAPYELVRVKVPLSREERAEYL 256
RLGLTA PER+D H L P L+GP+VY+ L+G YL+ +E+ R+ V L+ +E Y
Sbjct: 196 RLGLTATPERSDGRHKLYPSLVGPLVYRITVSNLVGKYLSSFEIQRIYVNLTEDEEKLYR 255
Query: 257 KHYKVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALEEARKIALGSKAKIEEL 316
+ + K++LS+ L++KSL DF +++ D +A +AL A EA KIA+ SKAK+E+L
Sbjct: 256 HYRGILKKFLSQRNLKLKSLNDFNRLLRLAVKDKEAREALLAWHEALKIAVNSKAKLEKL 315
Query: 317 RKILERHRGEKIIISTRYNELVYEISRKFLIPAITHKTSKEERVEILRKFREGKYMAVVS 376
+ +L+ GEKIII TR +VYEISR FLIPA+T+KT+K+ER+EIL KFR GKY +V+
Sbjct: 316 KDLLKELNGEKIIIFTRNTSMVYEISRLFLIPAVTYKTNKQERIEILEKFRSGKYNVIVT 375
Query: 377 SQVLDEGIDVPDASVGIIISGTGSPRELVQRLGRILRPAPGKERAILYELITPGTTEVRI 436
S VLDEGIDVPDAS+GI++ G G+ R+ +QRLGRILR K +A L E+IT GT++ +
Sbjct: 376 SSVLDEGIDVPDASIGIVLGGYGTSRQFIQRLGRILRKKENK-KARLIEIITKGTSDYNL 434
Query: 437 SSRR 440
S RR
Sbjct: 435 SKRR 438
>gi|10803640 ORF H1047 [Halobacterium sp. NRC-1] >gi|7446116|pir||T08310
helicase homolog H1047 - Halobacterium sp. (strain
NRC-1) plasmid pNRC100 >gi|2822371|gb|AAC82877.1|
(AF016485) ORF H1047 [Halobacterium sp. NRC-1]
>gi|10584184|gb|AAG20805.1| (AE005148) DNA repair
protein; Rad25 [Halobacterium sp. NRC-1]
Length = 469
Score = 367 bits (933), Expect = e-100
Identities = 203/463 (43%), Positives = 290/463 (61%), Gaps = 19/463 (4%)
Query: 1 MKLYYDRGTIKVI-GNSYVPYARWDERCRCYRALAYKYRDIVEFLE--------SEGIEF 51
M+L +D GT+ + + VPYA WD+R YRA A Y+D+ ++ + ++
Sbjct: 1 MRLAFDDGTLLLEDAPNSVPYADWDDRVDEYRARALHYQDLCQWAQGPDGQATLNQASHT 60
Query: 52 EDYVLENALPSRVYD---DVEFELRDYQEEAVERWM-REKRGVIVLPTGAGKTIVAMEII 107
++ + ++A R D V E RDYQ+ A+ W ++RG +VLPTG+GKT +A++ I
Sbjct: 61 DESLHDDARAYRDLDLTPAVAIEPRDYQQAALAAWTDHDRRGSVVLPTGSGKTFLAVQAI 120
Query: 108 KRLSLSTLVIVPTLALLEQWKERL-EIFGD-----VGEFSGRKKELKPITVTTYDSAYIN 161
S+STLV+VPT+ LL QW L FGD +G G + ITVTTYDSAY
Sbjct: 121 ADASVSTLVVVPTIDLLNQWHATLTNAFGDQLPHEIGVLGGGSHNVTDITVTTYDSAYRY 180
Query: 162 AEFLGDKFFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPI 221
GD+F LL+ DE HHLP+ Y+ I +M+ APYRLGLTA ER D H++L DLIGP+
Sbjct: 181 INEYGDQFGLLVVDEVHHLPAPTYQQIPEMTIAPYRLGLTATYERTDGEHNVLEDLIGPV 240
Query: 222 VYKKAPRELMGTYLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQK 281
VY++ EL G YL+ YE + +KV L+ EER +Y Y++++ YL + I + +Q+
Sbjct: 241 VYEENVDELAGEYLSEYETIHLKVDLTPEERNQYDDEYQIYRDYLDNHDVDIWKQDGYQE 300
Query: 282 IVMRTGVDNKAFKALRALEEARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEI 341
+ RT D +AL A + A +IA ++ K++ L +L+RH ++ II T N+ Y+I
Sbjct: 301 FLKRTSYDPDGRRALIAKQRAEEIARTAEKKLDTLDNLLKRHYNDRTIIFTANNDFAYDI 360
Query: 342 SRKFLIPAITHKTSKEERVEILRKFREGKYMAVVSSQVLDEGIDVPDASVGIIISGTGSP 401
S++F++P ITH+T +ER EIL +FR G+Y +V+SQVLDEGIDVP A+VGII+SG+ S
Sbjct: 361 SQEFIVPCITHQTQTDERTEILERFRTGEYSMLVTSQVLDEGIDVPAANVGIILSGSASK 420
Query: 402 RELVQRLGRILRPAPGKERAILYELITPGTTEVRISSRRLSGI 444
R+ QRLGRILRP +E A LYELIT T E +S RR G+
Sbjct: 421 RQYAQRLGRILRPTEDREPARLYELITDDTMEQYVSKRRRQGV 463
>emb|CAC12145.1| (AL445066) DNA repair protein RAD25 related protein [Thermoplasma
acidophilum]
Length = 453
Score = 337 bits (854), Expect = 2e-91
Identities = 191/448 (42%), Positives = 279/448 (61%), Gaps = 12/448 (2%)
Query: 3 LYYDRGTIKVIG---NSYVPYARWDERCRCYRALAYKYRDIVEFLESEGIEFEDYVLENA 59
+ Y G+I + G N A +D R CYR+L Y I+ F GI+ D V++
Sbjct: 4 IVYSGGSILIKGYDGNIPEDLAVFDHRIACYRSLGVNYPRILSFFRDAGIDAVDRVMDR- 62
Query: 60 LPSRVYDDVEFELRDYQEEAVERWMRE-KRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIV 118
+ + LR YQ +A+E W + RG +VLPT AGKT + M I+ +S L++V
Sbjct: 63 --KHLNLNGRISLRPYQLQALEEWKKYGMRGTVVLPTAAGKTHIGMAAIQAVSERALILV 120
Query: 119 PTLALLEQWKERL-EIFG-DVGEFSGRKKELKPITVTTYDSAYINAEFLGDKFFLLIFDE 176
PT+ LL QWK+R+ E FG + G+ G + + + ITV+TYDSAY+ AE G++F L+I DE
Sbjct: 121 PTIDLLSQWKKRIQETFGVEPGQIGGGEHDERDITVSTYDSAYLMAEKYGNRFSLIIADE 180
Query: 177 CHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPRELMGTYLA 236
HHL SE R I M AP+R+GLTA ER D L +L ++G +++ E+ YLA
Sbjct: 181 VHHLASEKLRMIPLMYTAPFRMGLTATYERTDGLQKVLEQIMGGKIFELGYEEI-DEYLA 239
Query: 237 PYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKAL 296
Y + R+ + LS EE A+Y +++++F YL + ++ DF+K + R+ + +AL
Sbjct: 240 DYTIARIPIELSDEEYADYQRYHEIFVSYLRRHRMVMRGPWDFEKFI-RSSWTPEGREAL 298
Query: 297 RALEEARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLIPAITHKTSK 356
A ++R+IA S+ K+E +R IL +HRGEK +I E Y IS++FLIPAIT+ T K
Sbjct: 299 IAWRKSREIAFNSRGKMEMIRTILSKHRGEKTLIFAEDTETAYTISKEFLIPAITYLTDK 358
Query: 357 EERVEILRKFREGKYMAVVSSQVLDEGIDVPDASVGIIISGTGSPRELVQRLGRILRPAP 416
EER +I FREG+ A+ +S+VLDEG+D PDASV I++SG+GS R+ QRLGRILRP+
Sbjct: 359 EEREKIPAMFREGRITAIATSRVLDEGVDFPDASVAIVVSGSGSMRQFRQRLGRILRPSA 418
Query: 417 GKERAILYELITPGTTEVRISSRRLSGI 444
GK +A++YEL+T T+E +S RR G+
Sbjct: 419 GK-KAVMYELVTAETSEFGVSRRRRKGV 445
>gb|AAF69763.1| (AF068771) similar to RAD25 [Synechocystis PCC9413]
Length = 449
Score = 295 bits (747), Expect = 7e-79
Identities = 168/377 (44%), Positives = 236/377 (62%), Gaps = 7/377 (1%)
Query: 71 ELRDY--QEEAVERWMREKR-GVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQW 127
E+R Y Q EA++ W R G++VLPT AGKT +A ++ STL++VPTL L+ QW
Sbjct: 26 EMRPYAHQSEALQAWKEAGRQGIVVLPTAAGKTYLAQLAMQATPRSTLIVVPTLDLMHQW 85
Query: 128 -KERLEIFGD--VGEFSGRKKELKPITVTTYDSAYINAEFLGDKFFLLIFDECHHLPSEA 184
+ L F D +G G ++ I V TYDSA I+AE LG ++ IFDECHHLP++
Sbjct: 86 YAQLLAAFPDAEIGLLGGGSRDRTSILVATYDSAAIHAESLGSQYAFAIFDECHHLPTDF 145
Query: 185 YRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPRELMGTYLAPYELVRVK 244
YR IA+ S APYRLGLTA ER+D L +LIG IVY+K P EL GT LA +++ ++K
Sbjct: 146 YRPIAEYSIAPYRLGLTATIERSDGRDRDLLNLIGDIVYQKTPEELAGTALAHHKIAQIK 205
Query: 245 VPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALEEARK 304
V LS ER Y + + +L + + S+E ++ V + +A+ A +AR+
Sbjct: 206 VKLSVRERETYQRLIQERNEFLRSQNISLGSMEGWKMFVQASARSAAGRRAMLAHRQARE 265
Query: 305 IALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLIPAITHKTSKEERVEILR 364
IAL + K+ L +L +H E II T N VY+IS+ LIPAITH+T +ER EIL
Sbjct: 266 IALITDGKLRVLINLLGQHYPESTIIFTADNATVYKISKALLIPAITHQTPVKERHEILT 325
Query: 365 KFREGKYMAVVSSQVLDEGIDVPDASVGIIISGTGSPRELVQRLGRILRPAPG-KERAIL 423
+F+ G Y +++S VL+EG+DVP+A + I++SGTGS RE +QRLGR+LR +++AIL
Sbjct: 326 RFKAGDYKTLIASHVLNEGVDVPEARIAIVLSGTGSRREYIQRLGRVLRKGQNDQKQAIL 385
Query: 424 YELITPGTTEVRISSRR 440
YE+I T E S+RR
Sbjct: 386 YEVIAEDTVEEGTSARR 402
>pir||B72707 hypothetical protein APE1073 - Aeropyrum pernix (strain K1)
>gi|5104743|dbj|BAA80058.1| (AP000060) 539aa long
hypothetical protein [Aeropyrum pernix]
Length = 539
Score = 276 bits (698), Expect = 4e-73
Identities = 178/432 (41%), Positives = 248/432 (57%), Gaps = 22/432 (5%)
Query: 23 WDERCRCYRALAYKYRDIVEFLESEGIEFEDYVL---ENALPSRVYDDVEFELRDYQEEA 79
+D R YRA Y + E E G++ ED V +LP V ELRDYQEEA
Sbjct: 117 YDREARAYRAPPIMYPRLREAFERRGLKVEDRVFPPSSRSLPRPVR--FTGELRDYQEEA 174
Query: 80 VERWMREK-RGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWKERLEIFGD-- 136
+E W + RGVIVLPTGAGKT+VA+ + + +L++V T + QW + F D
Sbjct: 175 LEAWRKAGGRGVIVLPTGAGKTVVAIAAVAWAGVWSLIVVYTRDHVRQWIDAFRRFTDAH 234
Query: 137 --VGEFSGRKKELKPITVTTYDSAYINAEFLGDKFFLLIFDECHHLPSEAYRNIAQMSAA 194
VG + G +K L PITVTTY +AY + + L F L+FDE HH+P++ ++ IA S A
Sbjct: 235 SLVGAYYGEEKRLAPITVTTYQTAYRHIDRLAPLFPFLVFDEAHHIPADKFKRIASASPA 294
Query: 195 PYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPRELMGT-YLAPYELVRVKVPLSREERA 253
PYR+GL+A ER D H+ + L+G +VY +P EL YLAP+ + RVKV L EE+
Sbjct: 295 PYRMGLSATIEREDGRHEEVYSLVGGVVYSSSPGELTRKGYLAPFVIRRVKVELEEEEKR 354
Query: 254 EYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALEEARKIALGSKAKI 313
Y + K R L+ K LED ++ D A +A+R ++I S++KI
Sbjct: 355 LY-EDLKRKYRILARGRSFEKILEDARR------GDPTAIEAIRVNTRMKEIVQLSESKI 407
Query: 314 EELRKIL--ERHRGEKIIISTRYNELVYEISRKFLIPAITHKTSKEERVEILRKFREGKY 371
+ K++ E RG K+I+ T+Y EI+R+ + + R L KFR K
Sbjct: 408 RAVEKLVREELSRGSKVIVFTQYRRQAEEIARRTGALLLHGGLERRVREATLAKFRALKA 467
Query: 372 MAVVSSQVLDEGIDVPDASVGIIISGTGSPRELVQRLGRILRPAPGKERAILYELITPGT 431
A+V + V DEG+D+PDA+VGI++SGTGS R+ +QRLGR+LRP GK RA+LYE+I GT
Sbjct: 468 GALVVTTVGDEGLDIPDANVGILVSGTGSRRQFIQRLGRLLRPGEGK-RAVLYEVIARGT 526
Query: 432 TEVRISSRRLSG 443
E + SRR G
Sbjct: 527 GE-ELQSRRRRG 537
>gb|AAK41233.1| DNA repair protein rad25 [Sulfolobus solfataricus]
Length = 551
Score = 273 bits (692), Expect = 2e-72
Identities = 169/429 (39%), Positives = 254/429 (58%), Gaps = 26/429 (6%)
Query: 22 RWDERCRCYRALAYKYRDIVEFLESEGIEFEDYVLENALPSRVYDDVEFE----LRDYQE 77
R+D++ R + Y ++++ L G+E ++ L + + EFE LR+YQ
Sbjct: 117 RYDKQNRRFIVRPMDYFNLLQKLRENGLEVKELNLS-------FKEFEFEFNGQLREYQR 169
Query: 78 EAVERWMRE-KRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWKERLEIFG- 135
EA+E W++ +GVI LPTGAGKT+V ++ I + TL++ T + QWKE + F
Sbjct: 170 EAIENWIKNGNKGVIALPTGAGKTVVGIKGIDIIRKPTLIVTFTKEQMLQWKEAILKFTS 229
Query: 136 ---DVGEFSGRKKELKPITVTTYDSAYINAEFLGDKFFLLIFDECHHLPSEAYRNIAQMS 192
D+G + +K ++PIT+TTY +AY + L DKF+LLI DE HHLP++ ++ IA+
Sbjct: 230 KRPDIGLYYSEEKRIRPITITTYHTAYRHLPQLFDKFYLLIVDEVHHLPADKFKLIAEGL 289
Query: 193 AAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPRELMGT-YLAPYELVRVKVPLSREE 251
APYR+GL+A P R DN H+ L LIG I+Y K+ EL YLA YE+++ KV L+ EE
Sbjct: 290 IAPYRMGLSATPHREDNKHNELFSLIGGIIYYKSVTELAKLGYLASYEIIQKKVRLTLEE 349
Query: 252 RAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALEEARKIALGSKA 311
R Y + FK G ++ L + K D A +A+R E RKI +
Sbjct: 350 RKRYNELLNRFKAL--SKGRKVSELIELVK-----KGDESAIEAMRVYNEMRKIVNFASE 402
Query: 312 KIEELRKILERHRGEKIIISTRYNELVYEISRKFLIPAITHKTSKEERVEILRKFREGKY 371
K++ L +IL+ +G KI+I T+Y + EI++++ +T K SKEER +L F+
Sbjct: 403 KMKALDEILKSEKG-KILIFTQYIDQAEEIAKRYNSLLLTGKMSKEERKRVLVTFKTMNA 461
Query: 372 MAVVSSQVLDEGIDVPDASVGIIISGTGSPRELVQRLGRILRPAPGKERAILYELITPGT 431
+V + V DEGID+PDA+VGII++GT S R+ +QRLGRI+RP GK+ A LYE++ GT
Sbjct: 462 GVLVLTTVGDEGIDIPDANVGIIVTGTSSRRQFIQRLGRIMRPYNGKQ-AKLYEIVVSGT 520
Query: 432 TEVRISSRR 440
E + +R
Sbjct: 521 PEEYQAKKR 529
>pir||E70815 hypothetical protein Rv0861c - Mycobacterium tuberculosis (strain
H37RV) >gi|2916920|emb|CAA17667.1| (AL022004)
hypothetical protein Rv0861c [Mycobacterium
tuberculosis]
Length = 542
Score = 160 bits (401), Expect = 3e-38
Identities = 119/402 (29%), Positives = 188/402 (46%), Gaps = 56/402 (13%)
Query: 54 YVLENALPSRVYDDVEFELRDYQEEAVERWMREKRGVIVLPTGAGKTIVAMEIIKRLSLS 113
YV A P ++ + ++LRDYQ A + + GV+VLP GAGKT+V + + +
Sbjct: 158 YVDGEAHPISLHQE-GWQLRDYQRLAADSFWAGGSGVVVLPCGAGKTLVGAAAMAKAGAT 216
Query: 114 TLVIVPTLALLEQWKERLE-----IFGDVGEFSGRKKELKPITVTTYD-------SAYIN 161
TL++V + QWK L ++GEFSG +KE++P+T++TY Y +
Sbjct: 217 TLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRPVTISTYQMITRRTKGEYRH 276
Query: 162 AEFLGDK-FFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGP 220
E + + L+I+DE H LP+ +R A + + RLGLTA R D + LIGP
Sbjct: 277 LELFDSRDWGLIIYDEVHLLPAPVFRMTADLQ-SKRRLGLTATLIREDGREGDVFSLIGP 335
Query: 221 IVYKKAPRELMGT-YLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDF 279
Y +++ ++AP E V V+V ++ ER Y
Sbjct: 336 KRYDAPWKDIEAQGWIAPAECVEVRVTMTDSERMMY------------------------ 371
Query: 280 QKIVMRTGVDNKAFKALRALEEARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVY 339
A EE +I KI ++ IL +H E+ ++ Y + +
Sbjct: 372 ---------------ATAEPEERYRICSTVHTKIAVVKSILAKHPDEQTLVIGAYLDQLD 416
Query: 340 EISRKFLIPAITHKTSKEERVEILRKFREGKYMAVVSSQVLDEGIDVPDASVGIIISGT- 398
E+ + P I T ER + FR G+ +V S+V + ID+P+A+V + +SGT
Sbjct: 417 ELGAELGAPVIQGSTRTSEREALFDAFRRGEVATLVVSKVANFSIDLPEAAVAVQVSGTF 476
Query: 399 GSPRELVQRLGRILRPAPGKERAILYELITPGTTEVRISSRR 440
GS +E QRLGRILRP AI Y ++ + + ++ R
Sbjct: 477 GSRQEEAQRLGRILRPKADGGGAIFYSVVARDSLDAEYAAHR 518
>pir||F71330 probable DNA repair helicase - syphilis spirochete
>gi|3322660|gb|AAC65366.1| (AE001217) DNA repair
helicase, putative [Treponema pallidum]
Length = 606
Score = 153 bits (382), Expect = 5e-36
Identities = 117/393 (29%), Positives = 194/393 (48%), Gaps = 64/393 (16%)
Query: 70 FELRDYQEEAVERWMREKR-----GVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALL 124
F RDYQ EA + ++ + GV+VLP GAGKT+V + ++ L TL++ P A
Sbjct: 235 FVPRDYQWEAADAFVGNRTQGSGFGVVVLPCGAGKTVVGLLVMGLLQTDTLILTPNSAAA 294
Query: 125 EQWK----ERLEIFG-DVGEFSGRKKELKPITVTTYD----SAYINAEFLGDKFF----- 170
+QWK E+ ++ G +G +SG KE++P+T+ TY A+ +A F + F
Sbjct: 295 QQWKRELCEKTDLDGTSIGIYSGECKEIRPVTIATYQILTWRAHADAPFSHFRLFMERSW 354
Query: 171 -LLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPRE 229
L+I+DE H LP+ +R A++ RLGLTA R D + L+GP Y ++
Sbjct: 355 GLIIYDEVHLLPAPLFRITAELQVV-RRLGLTATLVREDGCAQDVFSLVGPKRYDVPWKD 413
Query: 230 LMGT-YLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTGV 288
L ++A V V+V + R + +Y+ + +R++
Sbjct: 414 LEARGWIARVRCVEVRVTMDRSLQYQYM-----------TAPVRLR-------------- 448
Query: 289 DNKAFKALRALEEARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLIP 348
++A ++AK+ ++++L H G +I +Y + + ++ +P
Sbjct: 449 --------------HRLASENEAKVAVVQRLLRAHAGAPTLIIGQYVQQLLHLAHVLQVP 494
Query: 349 AITHKTSKEERVEILRKFREGKYMAVVSSQVLDEGIDVPDASVGIIISGT-GSPRELVQR 407
++ + + R I ++FREG +V S+V + +D+PDASV I +SGT GS +E QR
Sbjct: 495 LVSGRQTYAAREAIYQRFREGTLQVLVVSKVANCALDLPDASVAIQVSGTFGSRQEEAQR 554
Query: 408 LGRILRPAPGKERAILYELITPGTTEVRISSRR 440
LGR+LRP A Y L+T T E + RR
Sbjct: 555 LGRLLRPKICD--AHFYSLVTEQTVEEDCALRR 585
>pir||H71243 probable helicase protein PH0210 - Pyrococcus horikoshii
>gi|3256596|dbj|BAA29279.1| (AP000001) 444aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 444
Score = 129 bits (322), Expect = 5e-29
Identities = 113/419 (26%), Positives = 197/419 (46%), Gaps = 55/419 (13%)
Query: 20 YARWDERCRCYRALAYKYR-----DIVEFLESEG--IEFEDYVLENALPSRVYDDVEFEL 72
+ RWD+ Y + + ++L S+G + +D + P + E++L
Sbjct: 36 FGRWDKAESLYDPYTNTFPIGLLPRVKKYLNSKGYKVRVKDERVIEGEPLNSQWNEEYKL 95
Query: 73 RDYQEEAVERWMREKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWKERL- 131
R YQ++AV+ ++EK GV+ LP G+GKT+V + II ++ S LVIV T LL QW ++
Sbjct: 96 RKYQKKAVKLAIKEKMGVLALPVGSGKTVVGLRIIHEINKSALVIVHTKELLYQWANKVR 155
Query: 132 EIFG-DVGEFSGRKKELKPITVTTYDSAYI-NAEFLGDKFFLLIFDECHHL-PSEAYRNI 188
EI G + G K PITV + + L +K+ +++FDECH +E + +
Sbjct: 156 EILGVEPGIIGDNKWSEGPITVAMIQTLLSRGTDKLQNKYAIVMFDECHRTSAAEKFYKV 215
Query: 189 AQMSAAPYRLGLTAFPERADNLHDL-LPDLIGPIVYKKAPRELMGTYLAPYELVRVKVPL 247
YR GL+A P R ++ + ++GPI+Y+ +L+
Sbjct: 216 GISLPQVYRFGLSATPWRRLRGEEMKIEGVVGPIIYEVKAEDLI---------------- 259
Query: 248 SREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALEEARKIAL 307
+E ++V + L K E +++ VM N+A +E+A ++A
Sbjct: 260 --KEGFLAKPKFEVIEYDSKMPALADKYKELYEEAVMENEERNRAI-----VEKAIELA- 311
Query: 308 GSKAKIEELRKILERHRGEKIIISTR---YNELVYEISRKFLIPAITHKTSKEERVEILR 364
+G +++I + + E++ ++ R I A + R EIL
Sbjct: 312 ---------------KQGHRVLIDVKRIDHGEILVKMLRDRGINAEFLSSQSPNRWEILE 356
Query: 365 KFREGKYMAVVSSQVLDEGIDVPDASVGIIISGTGSPRELVQRLGRILRPAPGKERAIL 423
K+++G+ +VS+ +L EG+D+P+ S I+ G S +Q +GR LRP PG E I+
Sbjct: 357 KYKKGEIPVLVST-LLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKPGGEAVIV 414
>gb|AAC49987.1| (U29168) putative DNA repair protein and transcription factor
[Arabidopsis thaliana] >gi|9758046|dbj|BAB08509.1|
(AB006707) DNA excision repair cross-complementing
protein; similar to human Xeroderma pigmentosum group B
DNA repair protein [Arabidopsis thaliana]
Length = 755
Score = 127 bits (316), Expect = 3e-28
Identities = 126/431 (29%), Positives = 196/431 (45%), Gaps = 80/431 (18%)
Query: 52 EDYVLENALPSRVYDDVEFEL------RDYQEEAVERWM---REKRGVIVLPTGAGKTIV 102
E+Y N V D++ EL R YQE+++ + R + G+IVLP GAGK++V
Sbjct: 247 EEYDFRN---DNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV 303
Query: 103 AMEIIKRLSLSTLVIVPTLALLEQWKERLEIFGDVGE-----FSGRKKEL----KPITVT 153
+ R+ S L + ++QW + +++ + + F+ KE + VT
Sbjct: 304 GVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVT 363
Query: 154 TY-----------DSAYINAEFLGDKFFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTA 202
TY +S I E ++ LL+ DE H +P+ +R + ++ + +LGLTA
Sbjct: 364 TYNMVAFGGKRSEESEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTA 423
Query: 203 FPERADNLHDLLPDLIGPIVYKKAPRELM-GTYLAPYELVRVKVPLSREERAEYLKHYKV 261
R D L LIGP +Y+ +L+ G ++A + V P+++E AEYLK
Sbjct: 424 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKK--- 480
Query: 262 FKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALEEARKIALGSKAKIEELRKILE 321
E+ +K ++ F+A E L + E
Sbjct: 481 ---------------ENSKKKQALYVMNPNKFRA-----------------CEFLIRFHE 508
Query: 322 RHRGEKIIISTRYNELVYEISRKFLIPAITHKTSKEERVEILRKFREGKYM-AVVSSQVL 380
+ RG+KII+ + E + K P I TS ER +IL F+ K + V S+V
Sbjct: 509 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVG 568
Query: 381 DEGIDVPDASVGIIISG-TGSPRELVQRLGRILRP--------APGKE--RAILYELITP 429
D ID+P+A+V I IS GS R+ QRLGRILR A GKE A Y L++
Sbjct: 569 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 628
Query: 430 GTTEVRISSRR 440
T E+ S++R
Sbjct: 629 DTQEMYYSTKR 639
>gb|AAG27465.1|AF308595_1 (AF308595) putative DNA repair protein and transcription factor
[Arabidopsis thaliana]
Length = 766
Score = 127 bits (315), Expect = 3e-28
Identities = 125/431 (29%), Positives = 196/431 (45%), Gaps = 80/431 (18%)
Query: 52 EDYVLENALPSRVYDDVEFEL------RDYQEEAVERWM---REKRGVIVLPTGAGKTIV 102
E+Y N V D++ EL R YQE+++ + R + G+IVLP GAGK++V
Sbjct: 259 EEYDFRN---DNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV 315
Query: 103 AMEIIKRLSLSTLVIVPTLALLEQWKERLEIFGDVGE-----FSGRKKEL----KPITVT 153
+ R+ S L + ++QW + +++ + + F+ KE + VT
Sbjct: 316 GVSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIKDDQICRFTSDSKERFRGNAGVVVT 375
Query: 154 TY-----------DSAYINAEFLGDKFFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTA 202
TY ++ I E ++ LL+ DE H +P+ +R + ++ + +LGLTA
Sbjct: 376 TYNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTA 435
Query: 203 FPERADNLHDLLPDLIGPIVYKKAPRELM-GTYLAPYELVRVKVPLSREERAEYLKHYKV 261
R D L LIGP +Y+ +L+ G ++A + V P+++E AEYLK
Sbjct: 436 TLVREDEKITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKK--- 492
Query: 262 FKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALEEARKIALGSKAKIEELRKILE 321
E+ +K ++ F+A E L + E
Sbjct: 493 ---------------ENSKKKQALYVMNPNKFRA-----------------CEFLIRFHE 520
Query: 322 RHRGEKIIISTRYNELVYEISRKFLIPAITHKTSKEERVEILRKFREGKYM-AVVSSQVL 380
+ RG+KII+ + E + K P I TS ER +IL F+ K + V S+V
Sbjct: 521 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKTVNTVFLSKVG 580
Query: 381 DEGIDVPDASVGIIISG-TGSPRELVQRLGRILRP--------APGKE--RAILYELITP 429
D ID+P+A+V I IS GS R+ QRLGRILR A GKE A Y L++
Sbjct: 581 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 640
Query: 430 GTTEVRISSRR 440
T E+ S++R
Sbjct: 641 DTQEMYYSTKR 651
>dbj|BAB08508.1| (AB006707) DNA excision repair cross-complementing protein
[Arabidopsis thaliana]
Length = 754
Score = 127 bits (315), Expect = 3e-28
Identities = 125/431 (29%), Positives = 196/431 (45%), Gaps = 80/431 (18%)
Query: 52 EDYVLENALPSRVYDDVEFEL------RDYQEEAVERWM---REKRGVIVLPTGAGKTIV 102
E+Y N V D++ EL R YQE+++ + R + G+IVLP GAGK++V
Sbjct: 247 EEYDFRN---DNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV 303
Query: 103 AMEIIKRLSLSTLVIVPTLALLEQWKERLEIFGDVGE-----FSGRKKEL----KPITVT 153
+ R+ S L + ++QW + +++ + + F+ KE + VT
Sbjct: 304 GVSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIKDDQICRFTSDSKERFRGNAGVVVT 363
Query: 154 TY-----------DSAYINAEFLGDKFFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTA 202
TY ++ I E ++ LL+ DE H +P+ +R + ++ + +LGLTA
Sbjct: 364 TYNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTA 423
Query: 203 FPERADNLHDLLPDLIGPIVYKKAPRELM-GTYLAPYELVRVKVPLSREERAEYLKHYKV 261
R D L LIGP +Y+ +L+ G ++A + V P+++E AEYLK
Sbjct: 424 TLVREDEKITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKK--- 480
Query: 262 FKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALEEARKIALGSKAKIEELRKILE 321
E+ +K ++ F+A E L + E
Sbjct: 481 ---------------ENSKKKQALYVMNPNKFRA-----------------CEFLIRFHE 508
Query: 322 RHRGEKIIISTRYNELVYEISRKFLIPAITHKTSKEERVEILRKFREGKYM-AVVSSQVL 380
+ RG+KII+ + E + K P I TS ER +IL F+ K + V S+V
Sbjct: 509 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKTVNTVFLSKVG 568
Query: 381 DEGIDVPDASVGIIISG-TGSPRELVQRLGRILRP--------APGKE--RAILYELITP 429
D ID+P+A+V I IS GS R+ QRLGRILR A GKE A Y L++
Sbjct: 569 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 628
Query: 430 GTTEVRISSRR 440
T E+ S++R
Sbjct: 629 DTQEMYYSTKR 639
>pir||A75209 DNA repair protein rad25 PAB0128 - Pyrococcus abyssi (strain Orsay)
>gi|5457629|emb|CAB49120.1| (AJ248283) DNA repair
protein RAD25 [Pyrococcus abyssi]
Length = 446
Score = 124 bits (309), Expect = 2e-27
Identities = 109/421 (25%), Positives = 199/421 (46%), Gaps = 59/421 (14%)
Query: 20 YARWDERCRCYRALAYKYR-----DIVEFLESEGIEF---EDYVLENALPSRVYDDVEFE 71
+ RWD+ Y + + +FL S+G ++ V++ + +++ ++
Sbjct: 36 FGRWDKAESLYDPYTNTFPVGLLPRVKKFLNSKGYRVKVKDERVIDGVKINSTWNE-NYK 94
Query: 72 LRDYQEEAVERWMREKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWKERL 131
LR YQ++AV+ ++EK GV+ LP G+GKT+V + II + S L+IV T LL QW +++
Sbjct: 95 LRKYQKKAVKLAIKEKMGVLALPVGSGKTVVGLRIIHEIGRSALIIVHTKELLYQWADKV 154
Query: 132 -EIFG-DVGEFSGRKKELKPITVTTYDSAYI-NAEFLGDKFFLLIFDECHHL-PSEAYRN 187
EI G + G K ITV + + L +K+ +++FDECH +E +
Sbjct: 155 KEILGIEPGIIGDNKWSEGDITVAMIQTLLSRGTDKLQNKYAIVMFDECHRTSAAEKFYE 214
Query: 188 IAQMSAAPYRLGLTAFPERADNLHDL-LPDLIGPIVYKKAPRELMGT-YLAPYELVRVKV 245
+ YR GL+A P R ++ + ++GPI+Y+ +L+ +LA
Sbjct: 215 VGISLPQVYRFGLSATPWRRLRGEEMKIEGVVGPIIYEVKAEDLINEGFLAK-------- 266
Query: 246 PLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALEEARKI 305
++V + L K E +++ +M NKA +E+A ++
Sbjct: 267 -----------PKFEVIEYNSKMPALADKYKELYEEAIMENEERNKAI-----VEKAIEL 310
Query: 306 ALGSKAKIEELRKILERHRGEKIIISTR---YNELVYEISRKFLIPAITHKTSKEERVEI 362
A ++G +++I + + E++ ++ ++ + A + R EI
Sbjct: 311 A----------------NQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQSPNRWEI 354
Query: 363 LRKFREGKYMAVVSSQVLDEGIDVPDASVGIIISGTGSPRELVQRLGRILRPAPGKERAI 422
L KF+ G+ +VS+ +L EG+D+P+ S I+ G S +Q +GR LRP G E I
Sbjct: 355 LEKFKNGEIPVLVST-LLKEGVDIPEISAIILAGGGKSDVMTIQTIGRALRPKAGGEAVI 413
Query: 423 L 423
+
Sbjct: 414 V 414
>pir||S71206 DNA excision repair cross-complementing protein ERCC3 - Arabidopsis
thaliana
Length = 757
Score = 124 bits (308), Expect = 2e-27
Identities = 126/433 (29%), Positives = 195/433 (44%), Gaps = 82/433 (18%)
Query: 52 EDYVLENALPSRVYDDVEFEL------RDYQEEAVERWM-----REKRGVIVLPTGAGKT 100
E+Y N V D++ EL R YQE+++ R + G+IVLP GAGK+
Sbjct: 247 EEYDFRN---DNVNPDLDMELKPHAQPRPYQEKSLRASKMFGNGRARSGIIVLPCGAGKS 303
Query: 101 IVAMEIIKRLSLSTLVIVPTLALLEQWKERLEIFGDVGE-----FSGRKKEL----KPIT 151
+V + R+ S L + ++QW + +++ + + F+ KE +
Sbjct: 304 LVGVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVV 363
Query: 152 VTTY-----------DSAYINAEFLGDKFFLLIFDECHHLPSEAYRNIAQMSAAPYRLGL 200
VTTY +S I E ++ LL+ DE H +P+ +R + ++ + +LGL
Sbjct: 364 VTTYNMVAFGGKRSEESEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGL 423
Query: 201 TAFPERADNLHDLLPDLIGPIVYKKAPRELM-GTYLAPYELVRVKVPLSREERAEYLKHY 259
TA R D L LIGP +Y+ +L+ G ++A + V P+++E AEYLK
Sbjct: 424 TATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKK- 482
Query: 260 KVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALEEARKIALGSKAKIEELRKI 319
E+ +K ++ F+A E L +
Sbjct: 483 -----------------ENSKKKQALYVMNPNKFRA-----------------CEFLIRF 508
Query: 320 LERHRGEKIIISTRYNELVYEISRKFLIPAITHKTSKEERVEILRKFREGKYM-AVVSSQ 378
E+ RG+KII+ + E + K P I TS ER +IL F+ K + V S+
Sbjct: 509 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSK 568
Query: 379 VLDEGIDVPDASVGIIISG-TGSPRELVQRLGRILRP--------APGKE--RAILYELI 427
V D ID+P+A+V I IS GS R+ QRLGRILR A GKE A Y L+
Sbjct: 569 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 628
Query: 428 TPGTTEVRISSRR 440
+ T E+ S++R
Sbjct: 629 STDTQEMYYSTKR 641
>gb|AAG19725.1| (AE005058) putative DNA helicase; Rhl [Halobacterium sp. NRC-1]
Length = 324
Score = 119 bits (295), Expect = 7e-26
Identities = 100/360 (27%), Positives = 168/360 (45%), Gaps = 56/360 (15%)
Query: 104 MEIIKRLSLSTLVIVPTLALLEQWKERL----EIFGD-VGEFSGRKKELKPITVTTYDSA 158
M ++ + TLV+VP+ L QW+E L + GD +GE+ G +K ++P+T+ TY +A
Sbjct: 1 MGALESVGGETLVLVPSRELATQWREELLANTSLTGDQIGEYHGGEKRVRPVTIATYQTA 60
Query: 159 YINAE---FLGDKFFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLP 215
++ F ++ L+++DE HH+P+E R A + + +RLGLTA P R D+ +
Sbjct: 61 GMDRHRHVFDDREWGLIVYDEVHHIPAEVARRSASLQ-SKHRLGLTATPVREDDKEADIY 119
Query: 216 DLIGPIVYKKAPRELMGTYLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKS 275
L+G + ++A E V ++ R++ Y Y + SG
Sbjct: 120 TLVGRPIGTDWDALFDAGFVAEPE-VEIRYVPWRDDDDRY--------EYAAASG----- 165
Query: 276 LEDFQKIVMRTGVDNKAFKALRALEEARKIALGSKAKIEELRKILERHRGEKIIISTRYN 335
R++A + AK E+ ++++H + ++ Y
Sbjct: 166 ------------------------HTRRRLAAENPAKEAEIEHLVDQHGDTQALVFVDYL 201
Query: 336 ELVYEISRKFLIPAITHKTSKEERVEILRKFREGKYMAVVSSQVLDEGIDVPDASVGIII 395
I+ + P + +T R +FR G A+V S++ DEGID+PDA ++
Sbjct: 202 SQGERIAERLDAPFVNGETPHSRRETHFDQFRTGALDALVVSRIGDEGIDLPDAEFAVVA 261
Query: 396 SGT-GSPRELVQRLGRILRPAPGKERAILYELITPGTTE---VRISSRRLS--GIKKLES 449
SG GS R+ QR GR +RP +++L+ L T GT E R R LS G++ ES
Sbjct: 262 SGLGGSRRQGAQRAGRTMRPG---SQSLLFVLATRGTEEEDHARSRMRHLSTKGVRVTES 318
>gb|AAB62732.1| (U77065) RepB [Dictyostelium discoideum]
Length = 800
Score = 116 bits (288), Expect = 5e-25
Identities = 114/398 (28%), Positives = 185/398 (45%), Gaps = 65/398 (16%)
Query: 72 LRDYQEEAVERWM---REKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWK 128
+R YQE+++ + R + G+IVLP GAGK++ + + S LV+ + +EQWK
Sbjct: 318 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLSGITAACTVKKSILVLCTSAVSVEQWK 377
Query: 129 ERLEIFGDVGE-----FSGRKKE----LKPITVTTY-----------DSAYINAEFLGDK 168
+ +++ ++ E F+ KE + +T+TTY +S I E +
Sbjct: 378 YQFKLWSNIEERQISKFTSDNKEKISNVAGVTITTYTMVAFGGRRSAESLKIMNEITNRE 437
Query: 169 FFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPR 228
+ L++ DE H +P+ +R + ++ A +LGLTA R D L LIGP +Y+
Sbjct: 438 WGLVLLDEVHVVPAAMFRKVLTVTKAHCKLGLTATLLREDEKIQDLNFLIGPKLYEANWL 497
Query: 229 ELM-GTYLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTG 287
+L +LA V P++ E EYL +++S +K ++ T
Sbjct: 498 DLQKAGFLANVSCSEVWCPMTAEFYKEYL---------INDS--------QGKKKLLYTM 540
Query: 288 VDNKAFKALRALEEARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLI 347
NK F+A L RG+KII+ + + + ++
Sbjct: 541 NPNK-FRACEYLIR------------------FHEQRGDKIIVFSDNVYALQKYAKGLGR 581
Query: 348 PAITHKTSKEERVEILRKFR-EGKYMAVVSSQVLDEGIDVPDASVGIIISG-TGSPRELV 405
I TS ER+ IL KF+ + + S+V D ID+P+A+V I +S GS R+
Sbjct: 582 YFIYGPTSGHERMSILSKFQHDPTVRTIFISKVGDTSIDIPEATVIIQVSSHYGSRRQEA 641
Query: 406 QRLGRILRPAP---GKERAILYELITPGTTEVRISSRR 440
QRLGRILRP P G A Y L++ T E+ S++R
Sbjct: 642 QRLGRILRPKPKSDGLYNAFFYSLVSKDTQEMYYSTKR 679
>gi|4557563 excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing); Excision-repair cross-complementing
rodent repair deficiency,; excision repair
cross-complementing rodent repair defici>
>gi|119541|sp|P19447|XPB_HUMAN DNA-REPAIR PROTEIN
COMPLEMENTING XP-B CELLS (XERODERMA PIGMENTOSUM GROUP B
COMPLEMENTING PROTEIN) (DNA EXCISION REPAIR PROTEIN
ERCC-3) (BASAL TRANSCRIPTION FACTOR 2 89 KDA SUBUNIT)
(BTF2-P89) (TFIIH 89 KDA SUBUNIT) >gi|105955|pir||A35661
DNA excision repair cross-complementing protein ERCC3 -
human >gi|182179|gb|AAA52396.1| (M31899) DNA repair
helicase [Homo sapiens]
Length = 782
Score = 113 bits (279), Expect = 6e-24
Identities = 110/399 (27%), Positives = 185/399 (45%), Gaps = 68/399 (17%)
Query: 72 LRDYQEEAVERWM---REKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWK 128
LR YQE+++ + R + GVIVLP GAGK++V + + LV+ + +EQWK
Sbjct: 316 LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSAVSVEQWK 375
Query: 129 ERLEIFGDVGE-----FSGRKKELKPI---------------TVTTYDSAYINAEFLGDK 168
+ +++ + + F+ K+ KPI T ++++ + +
Sbjct: 376 AQFKMWSTIDDSQICRFTSDAKD-KPIGCSVAISTYSMLGHTTKRSWEAERVMEWLKTQE 434
Query: 169 FFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPR 228
+ L+I DE H +P++ +R + + A +LGLTA R D+ L LIGP +Y+
Sbjct: 435 WGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWM 494
Query: 229 ELMGT-YLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTG 287
EL Y+A + V P+S E EY+ +++ ++I++ T
Sbjct: 495 ELQNNGYIAKVQCAEVWCPMSPEFYREYV------------------AIKTKKRILLYTM 536
Query: 288 VDNKAFKALRALEEARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLI 347
NK F+A + L + R +KII+ + E + +
Sbjct: 537 NPNK-FRACQFLIK------------------FHERRNDKIIVFADNVFALKEYAIRLNK 577
Query: 348 PAITHKTSKEERVEILRKFREG-KYMAVVSSQVLDEGIDVPDASVGIIISG-TGSPRELV 405
P I TS+ ER++IL+ F+ K + S+V D D+P+A+V I IS GS R+
Sbjct: 578 PYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEA 637
Query: 406 QRLGRILRPAPG----KERAILYELITPGTTEVRISSRR 440
QRLGR+LR G + A Y L++ T E+ S++R
Sbjct: 638 QRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKR 676
>sp|P49135|XPB_MOUSE DNA-REPAIR PROTEIN COMPLEMENTING XP-B CELLS HOMOLOG (XERODERMA
PIGMENTOSUM GROUP B COMPLEMENTING PROTEIN HOMOLOG) (DNA
EXCISION REPAIR PROTEIN ERCC-3) (BASAL TRANSCRIPTION
FACTOR 2 89 KD SUBUNIT) (BTF2-P89) (TFIIH 89 KD SUBUNIT)
>gi|477426|pir||A48994 DNA excision repair
cross-complementing protein ERCC3 - mouse
>gi|240583|gb|AAB20614.1| (S71186) XPBC/ERCC-3=DNA
repair gene [mice, Peptide, 783 aa] [Mus sp.]
Length = 783
Score = 112 bits (278), Expect = 7e-24
Identities = 110/399 (27%), Positives = 184/399 (45%), Gaps = 68/399 (17%)
Query: 72 LRDYQEEAVERWM---REKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWK 128
LR YQE+++ + R + GVIVLP GAGK++V + + LV+ + +EQWK
Sbjct: 317 LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSAVSVEQWK 376
Query: 129 ERLEIFGDVGE-----FSGRKKELKPI---------------TVTTYDSAYINAEFLGDK 168
+ +++ + + F+ K+ KPI T ++++ + +
Sbjct: 377 AQFKMWSTIDDSQICRFTSDAKD-KPIGCSVAISTYSMLGHTTKRSWEAERVMEWLKTQE 435
Query: 169 FFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPR 228
+ L+I DE H +P+ +R + + A +LGLTA R D+ L LIGP +Y+
Sbjct: 436 WGLMILDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWM 495
Query: 229 ELMGT-YLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTG 287
EL Y+A + V P+S E EY+ +++ ++I++ T
Sbjct: 496 ELQNNGYIAKVQCAEVWCPMSPEFYREYV------------------AIKTKKRILLYTM 537
Query: 288 VDNKAFKALRALEEARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLI 347
NK F+A + L + R +KII+ + E + +
Sbjct: 538 NPNK-FRACQFLIK------------------FHERRNDKIIVFADNVFALKEYAIRLNK 578
Query: 348 PAITHKTSKEERVEILRKFREG-KYMAVVSSQVLDEGIDVPDASVGIIISG-TGSPRELV 405
P I TS+ ER++IL+ F+ K + S+V D D+P+A+V I IS GS R+
Sbjct: 579 PYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEA 638
Query: 406 QRLGRILRPAPG----KERAILYELITPGTTEVRISSRR 440
QRLGR+LR G + A Y L++ T E+ S++R
Sbjct: 639 QRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKR 677
>pir||T31655 DNA excision repair cross-complementing protein - sea squirt (Ciona
intestinalis) >gi|1764011|emb|CAB06045.1| (Z83760)
COS41.1 [Ciona intestinalis]
Length = 793
Score = 110 bits (272), Expect = 4e-23
Identities = 115/443 (25%), Positives = 199/443 (43%), Gaps = 80/443 (18%)
Query: 38 RDIVEFLESEGIEFE-----DYVLENALPSRVYDDVEFEL------RDYQEEAVERWM-- 84
+++VE L+ IE E +Y N + D++ +L R YQE+++ +
Sbjct: 286 QEMVETLQKRCIELEYPLLAEYDFRN---DTINKDLKIDLKPTTVLRPYQEKSLRKMFGN 342
Query: 85 -REKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWKERLEIFGDVGE---- 139
R + GVIVLP GAGKT+V + + +V+ + +EQW+ + +++ +
Sbjct: 343 GRARSGVIVLPCGAGKTLVGVTAACTVRKRCMVLCTSGVAVEQWRSQFKMWSTADDSMIC 402
Query: 140 -FSGRKKELK---PITVTTY-----------DSAYINAEFLGDKFFLLIFDECHHLPSEA 184
F+ K+ I ++TY +S + ++ L++ DE H +P++
Sbjct: 403 RFTSDAKDRPHGCSIAISTYSMMGHSMKRSYESEKVMEWIRSQEWGLIVLDEVHTIPAKQ 462
Query: 185 YRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPRELM-GTYLAPYELVRV 243
+R + + + +LGLTA R D+ L LIGP +Y+ EL G ++A + V
Sbjct: 463 FRRVLTVVQSHCKLGLTATLVREDDKISDLNFLIGPKLYEANWMELQNGGFIARVQCAEV 522
Query: 244 KVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALEEAR 303
P++ E EYL S+ +++++ NK F+A + L
Sbjct: 523 WCPMTPEFYREYL------------------SIRSRKRLLLYVMNPNK-FRACQFLVR-- 561
Query: 304 KIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLIPAITHKTSKEERVEIL 363
R +KI++ + + E + + P I T++ ER++IL
Sbjct: 562 ----------------FHERRNDKIVVFSDNVFALKEYAVRMGKPYIYGPTTQGERLQIL 605
Query: 364 RKF-REGKYMAVVSSQVLDEGIDVPDASVGIIISG-TGSPRELVQRLGRILRPAPG---- 417
+ F K + S+V D ID+P A+V I +S GS R+ QRLGRILR G
Sbjct: 606 QNFIHNPKVNTIFISKVGDNSIDLPAANVLIQVSSHGGSRRQEAQRLGRILRAKKGSLAE 665
Query: 418 KERAILYELITPGTTEVRISSRR 440
+ A Y L++ T EV S++R
Sbjct: 666 EYNAFFYSLVSQDTVEVAYSTKR 688
>sp|Q02870|XPB_DROME DNA EXCISION REPAIR PROTEIN HAYWIRE (ERCC-3 HOMOLOG PROTEIN)
>gi|283659|pir||S26719 ERCC3 protein - fruit fly
(Drosophila melanogaster) >gi|11079|emb|CAA48386.1|
(X68309) ERCC3 [Drosophila melanogaster]
Length = 802
Score = 109 bits (270), Expect = 6e-23
Identities = 112/401 (27%), Positives = 183/401 (44%), Gaps = 72/401 (17%)
Query: 72 LRDYQEEAVERWM---REKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWK 128
LR YQE+++ + R + GVIVLP GAGK++V + + LV+ + +EQWK
Sbjct: 336 LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWK 395
Query: 129 ERLEIFGDVGE-----FSGRKKELKP----ITVTTYD----------SAYINAEFLGD-K 168
++ +++ + F+ K+ KP I VTTY A +L + +
Sbjct: 396 QQFKMWSTADDSMICRFTSEAKD-KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQE 454
Query: 169 FFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPR 228
+ +++ DE H +P++ +R + + + +LGLTA R D+ L LIGP +Y+
Sbjct: 455 WGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWL 514
Query: 229 ELMGT-YLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTG 287
EL Y+A + V P+S E EYL K K+ L
Sbjct: 515 ELQKKGYIARVQCAEVWCPMSPEFYREYLT-TKTSKKML--------------------- 552
Query: 288 VDNKAFKALRALEEARKIALGSKAKIEELRKILERH--RGEKIIISTRYNELVYEISRKF 345
+ + + +K + +++ H RG+K I+ + + + K
Sbjct: 553 -----------------LYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM 595
Query: 346 LIPAITHKTSKEERVEILRKFR-EGKYMAVVSSQVLDEGIDVPDASVGIIISG-TGSPRE 403
P I TS+ ER++IL+ F+ K + S+V D D+P+A+V I IS GS R+
Sbjct: 596 NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQ 655
Query: 404 LVQRLGRILRPAPG----KERAILYELITPGTTEVRISSRR 440
QRLGRILR G + A Y L++ T E+ S +R
Sbjct: 656 EAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKR 696
>gb|AAF50150.1| (AE003547) hay gene product [Drosophila melanogaster]
Length = 798
Score = 109 bits (270), Expect = 6e-23
Identities = 112/401 (27%), Positives = 183/401 (44%), Gaps = 72/401 (17%)
Query: 72 LRDYQEEAVERWM---REKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWK 128
LR YQE+++ + R + GVIVLP GAGK++V + + LV+ + +EQWK
Sbjct: 332 LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWK 391
Query: 129 ERLEIFGDVGE-----FSGRKKELKP----ITVTTYD----------SAYINAEFLGD-K 168
++ +++ + F+ K+ KP I VTTY A +L + +
Sbjct: 392 QQFKMWSTADDSMICRFTSEAKD-KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQE 450
Query: 169 FFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPR 228
+ +++ DE H +P++ +R + + + +LGLTA R D+ L LIGP +Y+
Sbjct: 451 WGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWL 510
Query: 229 ELMGT-YLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTG 287
EL Y+A + V P+S E EYL K K+ L
Sbjct: 511 ELQKKGYIARVQCAEVWCPMSPEFYREYLT-TKTSKKML--------------------- 548
Query: 288 VDNKAFKALRALEEARKIALGSKAKIEELRKILERH--RGEKIIISTRYNELVYEISRKF 345
+ + + +K + +++ H RG+K I+ + + + K
Sbjct: 549 -----------------LYVMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKM 591
Query: 346 LIPAITHKTSKEERVEILRKFR-EGKYMAVVSSQVLDEGIDVPDASVGIIISG-TGSPRE 403
P I TS+ ER++IL+ F+ K + S+V D D+P+A+V I IS GS R+
Sbjct: 592 NKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQ 651
Query: 404 LVQRLGRILRPAPG----KERAILYELITPGTTEVRISSRR 440
QRLGRILR G + A Y L++ T E+ S +R
Sbjct: 652 EAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKR 692
>pir||A44223 DNA excision repair cross-complementing protein ERCC3 - fruit fly
(Drosophila melanogaster)
Length = 802
Score = 109 bits (269), Expect = 8e-23
Identities = 111/399 (27%), Positives = 177/399 (43%), Gaps = 69/399 (17%)
Query: 72 LRDYQEEAVERWM---REKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWK 128
LR YQE+++ + R + GVIVLP GAGK++V + + LV+ + +EQWK
Sbjct: 337 LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWK 396
Query: 129 ERLEIFGDVGE-----FSGRKKELKP----ITVTTYD----------SAYINAEFLGD-K 168
++ +++ + F+ K+ KP I VTTY A +L + +
Sbjct: 397 QQFKMWSTADDSMICRFTSEAKD-KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQE 455
Query: 169 FFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPR 228
+ +++ DE H +P++ +R + + + +LGLTA R D+ L LIGP +Y+
Sbjct: 456 WGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWL 515
Query: 229 ELMGT-YLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTG 287
EL Y+A + V P+S E EYL K L + + +S + K
Sbjct: 516 ELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVNPSKFRSCQFLIK------ 569
Query: 288 VDNKAFKALRALEEARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLI 347
RG+K I+ + + + K
Sbjct: 570 --------------------------------YHEQRGDKTIVFSDNVFALKHYAIKMNK 597
Query: 348 PAITHKTSKEERVEILRKFR-EGKYMAVVSSQVLDEGIDVPDASVGIIISG-TGSPRELV 405
P I TS+ ER++IL+ F+ K + S+V D D+P+A+V I IS GS R+
Sbjct: 598 PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEA 657
Query: 406 QRLGRILRPAPG----KERAILYELITPGTTEVRISSRR 440
QRLGRILR G + A Y L++ T E+ S +R
Sbjct: 658 QRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKR 696
>emb|CAA76655.1| (Y17148) XPB protein [Geodia cydonium]
Length = 810
Score = 109 bits (269), Expect = 8e-23
Identities = 108/403 (26%), Positives = 190/403 (46%), Gaps = 75/403 (18%)
Query: 72 LRDYQEEAVERWM---REKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWK 128
LR YQE+++ + R + GVIVLP GAGKT+V + + LV+ + +EQW+
Sbjct: 335 LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVGVTAACTVRKRCLVLCTSAVAVEQWR 394
Query: 129 ERLEIFGDVGE-----FSGRKKELKP-----ITVTTY-----------DSAYINAEFLGD 167
+ +++ + E F+ K+ KP + ++TY DS +
Sbjct: 395 SQFKLWSTIDERLVCRFTSDAKD-KPSPNTAVAISTYAMVAYTQKRAWDSQQMMNFLQQQ 453
Query: 168 KFFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAP 227
++ L+I DE +P++ +R + A +LGLTA R D+ L LIGP +Y+
Sbjct: 454 EWGLMILDEVQTIPADKFRRTLAVVQAHTKLGLTATLVREDDKIQDLNFLIGPKLYEANW 513
Query: 228 RELMGT-YLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRT 286
EL ++A + V P++ E +EYLK ++ +K ++
Sbjct: 514 MELQNNGFIAKVQCAEVWCPMTPEFYSEYLK------------------IKTRRKKLLYV 555
Query: 287 GVDNKAFKALRALEEARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEI---SR 343
NK F+A + L + + R +KIII ++++V+ + ++
Sbjct: 556 MNPNK-FRACQFLMKHHE------------------QRNDKIII---FSDVVFSLRTYAK 593
Query: 344 KFLIPAITHKTSKEERVEILRKFREGKYM-AVVSSQVLDEGIDVPDASVGIIISG-TGSP 401
+ P I +T+++ER+++L+ F+ + ++ S+V D D+PDA+V IS GS
Sbjct: 594 RLNKPFIDGQTNQQERMKVLQNFKHNPLVNTILISKVGDNSFDLPDANVLWKISAHGGSR 653
Query: 402 RELVQRLGRILR----PAPGKERAILYELITPGTTEVRISSRR 440
R+ QRLG ILR + A Y L++ T E+ S++R
Sbjct: 654 RQEAQRLGGILRAKKDSVSEEYNAFFYSLVSQDTEEMHFSTKR 696
>gb|AAA34942.1| (L01414) DNA helicase [Saccharomyces cerevisiae]
Length = 843
Score = 108 bits (267), Expect = 1e-22
Identities = 108/404 (26%), Positives = 181/404 (44%), Gaps = 76/404 (18%)
Query: 71 ELRDYQEEAVERWM---REKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQW 127
++R YQE+++ + R + G+IVLP GAGKT+V + + S +V+ + + QW
Sbjct: 361 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGITAACTIKKSVIVLCTSSVSVMQW 420
Query: 128 KERLEIF-----GDVGEFSGRKKEL----KPITVTTY-----------DSAYINAEFLGD 167
+++ + + F+ KE+ + V+TY DS + G
Sbjct: 421 RQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVSTYSMVANTRNRSHDSQKVMDFLTGR 480
Query: 168 KFFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAP 227
++ +I DE H +P+ +R + AA +LGLTA R D+ L LIGP +Y+
Sbjct: 481 EWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANW 540
Query: 228 REL-MGTYLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRT 286
EL ++A + V P++ E EYL+
Sbjct: 541 MELSQKGHIANVQCAEVWCPMTAEFYQEYLR----------------------------- 571
Query: 287 GVDNKAFKALRALEEARK---IALGSKAKIEELRKILERH--RGEKIIISTRYNELVYEI 341
E ARK + + + K + + +++ H RG+KII+ + + E
Sbjct: 572 -------------ETARKRMLLYIMNPTKFQACQFLIQYHERRGDKIIVFSDNVYALQEY 618
Query: 342 SRKFLIPAITHKTSKEERVEILRKFR-EGKYMAVVSSQVLDEGIDVPDASVGIIISG-TG 399
+ K P I T ++ER+ IL+ F+ + + S+V D ID+P+A+ I IS G
Sbjct: 619 ALKMGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYG 678
Query: 400 SPRELVQRLGRILRPAPGKE---RAILYELITPGTTEVRISSRR 440
S R+ QRLGRILR + A Y L++ T E+ S++R
Sbjct: 679 SRRQEAQRLGRILRAKRRNDEGFNAFFYSLVSKDTQEMYYSTKR 722
>gi|6322048 DNA helicase homolog; homolog of human XPBC, ERCC3; Ssl2p
[Saccharomyces cerevisiae]
>gi|267033|sp|Q00578|RA25_YEAST DNA REPAIR HELICASE
RAD25 >gi|320659|pir||S31272 DNA excision repair
cross-complementing protein ERCC3 [validated] - yeast
(Saccharomyces cerevisiae) >gi|172724|gb|AAA35102.1|
(M94176) encodes human ERCC-3 homologue [Saccharomyces
cerevisiae] >gi|557780|emb|CAA86135.1| (Z38059) DNA
repair helicase [Saccharomyces cerevisiae]
Length = 843
Score = 108 bits (267), Expect = 1e-22
Identities = 108/404 (26%), Positives = 181/404 (44%), Gaps = 76/404 (18%)
Query: 71 ELRDYQEEAVERWM---REKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQW 127
++R YQE+++ + R + G+IVLP GAGKT+V + + S +V+ + + QW
Sbjct: 361 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGITAACTIKKSVIVLCTSSVSVMQW 420
Query: 128 KERLEIF-----GDVGEFSGRKKEL----KPITVTTY-----------DSAYINAEFLGD 167
+++ + + F+ KE+ + V+TY DS + G
Sbjct: 421 RQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVSTYSMVANTRNRSHDSQKVMDFLTGR 480
Query: 168 KFFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAP 227
++ +I DE H +P+ +R + AA +LGLTA R D+ L LIGP +Y+
Sbjct: 481 EWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANW 540
Query: 228 REL-MGTYLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRT 286
EL ++A + V P++ E EYL+
Sbjct: 541 MELSQKGHIANVQCAEVWCPMTAEFYQEYLR----------------------------- 571
Query: 287 GVDNKAFKALRALEEARK---IALGSKAKIEELRKILERH--RGEKIIISTRYNELVYEI 341
E ARK + + + K + + +++ H RG+KII+ + + E
Sbjct: 572 -------------ETARKRMLLYIMNPTKFQACQFLIQYHERRGDKIIVFSDNVYALQEY 618
Query: 342 SRKFLIPAITHKTSKEERVEILRKFR-EGKYMAVVSSQVLDEGIDVPDASVGIIISG-TG 399
+ K P I T ++ER+ IL+ F+ + + S+V D ID+P+A+ I IS G
Sbjct: 619 ALKMGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYG 678
Query: 400 SPRELVQRLGRILRPAPGKE---RAILYELITPGTTEVRISSRR 440
S R+ QRLGRILR + A Y L++ T E+ S++R
Sbjct: 679 SRRQEAQRLGRILRAKRRNDEGFNAFFYSLVSKDTQEMYYSTKR 722
>gb|AAA74931.1| (L02965) helicase [Drosophila melanogaster]
Length = 801
Score = 105 bits (259), Expect = 1e-21
Identities = 110/399 (27%), Positives = 176/399 (43%), Gaps = 69/399 (17%)
Query: 72 LRDYQEEAVERWM---REKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWK 128
LR YQE+++ + R + GVIVLP GAGK++V + + LV+ + +EQWK
Sbjct: 336 LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWK 395
Query: 129 ERLEIFGDVGE-----FSGRKKELKP----ITVTTYD----------SAYINAEFLGD-K 168
++ +++ + F+ K+ KP I VTTY A +L + +
Sbjct: 396 QQFKMWSTADDSMICRFTSEAKD-KPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQE 454
Query: 169 FFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPR 228
+ +++ DE H +P++ +R + + + +LGLTA R D+ L LIGP +Y+
Sbjct: 455 WGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWL 514
Query: 229 ELMGT-YLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTG 287
EL Y+A + V P+S E EYL K L + + +S + K
Sbjct: 515 ELQKKGYIARCQCAEVWCPMSPEFYREYLTTKTSKKMLLYVNPSKFRSCQFLIK------ 568
Query: 288 VDNKAFKALRALEEARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLI 347
RG+K I+ + + + K
Sbjct: 569 --------------------------------YHEQRGDKTIVFSDNVFALKHYAIKMNK 596
Query: 348 PAITHKTSKEERVEILRKFR-EGKYMAVVSSQVLDEGIDVPDASVGIIISG-TGSPRELV 405
P I TS+ ER++IL+ F+ K + S+V D D+P+A+V I IS GS R+
Sbjct: 597 PFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEA 656
Query: 406 QRLGRILRPAPG----KERAILYELITPGTTEVRISSRR 440
QRL RILR G + A Y L++ T E+ S +R
Sbjct: 657 QRLVRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKR 695
>pir||T37821 probable dna repair helicase - fission yeast (Schizosaccharomyces
pombe) >gi|2370478|emb|CAB11506.1| (Z98849) putative dna
repair helicase [Schizosaccharomyces pombe]
Length = 804
Score = 102 bits (253), Expect = 6e-21
Identities = 108/403 (26%), Positives = 185/403 (45%), Gaps = 74/403 (18%)
Query: 71 ELRDYQEEAVERWM---REKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQW 127
++R YQE+++ + R + G+IVLP GAGKT+V + + S +V+ + + QW
Sbjct: 323 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGITAACTIKKSVIVLCTSSVSVMQW 382
Query: 128 KERLEIFGDV-----GEFSGRKKEL----KPITVTTY-----------DSAYINAEFLGD 167
+++ + ++ F+ KE + V+TY DS + G
Sbjct: 383 RQQFLQWSNIKPDHIAVFTADHKERFHSEAGVVVSTYSMVANTRNRSYDSQKMMDFLTGR 442
Query: 168 KFFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAP 227
++ ++ DE H +P+ +R + AA +LGLTA R D+ D L LIGP +Y+
Sbjct: 443 EWGFILLDEVHVVPAAMFRRVVTTIAAHTKLGLTATLVREDDKIDDLNFLIGPKMYEANW 502
Query: 228 REL-MGTYLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRT 286
+L ++A + V ++ E EYL+ E+ +K ++
Sbjct: 503 MDLAQKGHIAKVQCAEVWCAMTTEFYNEYLR-------------------ENSRKRMLLY 543
Query: 287 GVDNKAFKALRALEEARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFL 346
++ K F+A + L + RG+KII+ +++ VY + R +
Sbjct: 544 IMNPKKFQACQFLID------------------YHEKRGDKIIV---FSDNVYAL-RAYA 581
Query: 347 IPA----ITHKTSKEERVEILRKFREGKYM-AVVSSQVLDEGIDVPDASVGIIISG-TGS 400
I I T ++ER+ IL F+ + + + S+V D ID+P+A+ I IS GS
Sbjct: 582 IKLGKYFIYGGTPQQERMRILENFQYNELVNTIFLSKVGDTSIDLPEATCLIQISSHYGS 641
Query: 401 PRELVQRLGRILRPAPGKE---RAILYELITPGTTEVRISSRR 440
R+ QRLGRILR + A Y L++ T E+ SS+R
Sbjct: 642 RRQEAQRLGRILRAKRRNDEGFNAFFYSLVSKDTQEMYYSSKR 684
>gi|11429283 excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Homo sapiens]
Length = 580
Score = 78.4 bits (190), Expect = 2e-13
Identities = 81/320 (25%), Positives = 143/320 (44%), Gaps = 62/320 (19%)
Query: 72 LRDYQEEAVERWM---REKRGVIVLPTGAGKTIVAMEIIKRLSLSTLVIVPTLALLEQWK 128
LR YQE+++ + R + GVIVLP GAGK++V + + LV+ + +EQWK
Sbjct: 145 LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSAVSVEQWK 204
Query: 129 ERLEIFGDVGE-----FSGRKKELKPI---------------TVTTYDSAYINAEFLGDK 168
+ +++ + + F+ K+ KPI T ++++ + +
Sbjct: 205 AQFKMWSTIDDSQICRFTSDAKD-KPIGCSVAISTYSMLGHTTKRSWEAERVMEWLKTQE 263
Query: 169 FFLLIFDECHHLPSEAYRNIAQMSAAPYRLGLTAFPERADNLHDLLPDLIGPIVYKKAPR 228
+ L+I DE H +P++ +R + + A +LGLTA R D+ L LIGP +Y+
Sbjct: 264 WGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWM 323
Query: 229 ELMGT-YLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTG 287
EL Y+A + V P+S E EY+ +++ ++I++ T
Sbjct: 324 ELQNNGYIAKVQCAEVWCPMSPEFYREYV------------------AIKTKKRILLYTM 365
Query: 288 VDNKAFKALRALEEARKIALGSKAKIEELRKILERHRGEKIIISTRYNELVYEISRKFLI 347
NK F+A + L + R +KII+ + E + +
Sbjct: 366 NPNK-FRACQFLIK------------------FHERRNDKIIVFADNVFALKEYAIRLNK 406
Query: 348 PAITHKTSKEERVEILRKFR 367
P I TS+ ER++IL+ F+
Sbjct: 407 PYIYGPTSQGERMQILQNFK 426
>emb|CAA67095.1| (X98455) SNF [Bacillus cereus]
Length = 1064
Score = 71.4 bits (172), Expect = 2e-11
Identities = 106/430 (24%), Positives = 187/430 (42%), Gaps = 79/430 (18%)
Query: 72 LRDYQEEAVERWMREKR-----GVIVLPTGAGKTIVAMEII-------KRLSLSTLVIVP 119
+R+YQ E WM+ G++ G GKT+ ++ I + L LV+ P
Sbjct: 613 MREYQVYGFE-WMKTLAYYRFGGILADDMGLGKTLQSIAYIDSVLPEIREKKLPILVVSP 671
Query: 120 TLALLEQWKERLEIFGDV-------GEFSGRKKELKPIT-----VTTYDSAYINAEFLGD 167
+ +L+ W L+ F G + R+K LK + +T+Y +
Sbjct: 672 S-SLVYNWFSELKKFAPHIRAVIADGNQTERRKILKDVAEFDVVITSYPLLRRDVRSYAR 730
Query: 168 KFFLLIFDECHHLPSEAYRNIAQMSA-------APYRLGLTAFP------ERADNLHDLL 214
F L DE ++A++N +A A YR GLT P E H +
Sbjct: 731 PFHTLFLDE-----AQAFKNPTTQTARAVKTIQAEYRFGLTGTPVENSLEELWSIFHVVF 785
Query: 215 PDLI-GPIVYKKAPRELMGTYLAPYELVRVKVPLSRE--ERAEYLK-------HYKVFKR 264
P+L+ G + RE + + P+ L R+K + +E ++ E+L+ +++
Sbjct: 786 PELLPGRKEFGDLRREDIANAVKPFVLRRLKEDVLQELPDKIEHLQSSELLPDQKRLYAA 845
Query: 265 YLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALEEARKIA----------LGSKAKIE 314
YL++ LR ++L+ K +R NK + L L R+I GS AK+E
Sbjct: 846 YLAK--LREETLKHLDKDTLRK---NK-IRILAGLTRLRQICNHPALFVDDYKGSSAKLE 899
Query: 315 ELRKILE--RHRGEKIIISTRYNELVYEISRKFLIPAITH-----KTSKEERVEILRKFR 367
+L ILE R G++I+I +++ +++ I R+ AI + T +ERVE+ +F
Sbjct: 900 QLLDILEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFN 959
Query: 368 EGK-YMAVVSSQVLDEGIDVPDASVGIIISGTGSPRELVQRLGRILRPAPGKERAILYEL 426
EG+ + ++S + G+++ A I+ +P Q R R K + +L
Sbjct: 960 EGEGDLFLISLKAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAYRMGQ-KNTVQVIKL 1018
Query: 427 ITPGTTEVRI 436
+ GT E ++
Sbjct: 1019 VAHGTIEEKM 1028
>gi|6320539 Ydr332wp [Saccharomyces cerevisiae] >gi|2131433|pir||S59797
hypothetical protein YDR332w - yeast (Saccharomyces
cerevisiae) >gi|914990|gb|AAB64767.1| (U32517) Ydr332wp
[Saccharomyces cerevisiae]
Length = 689
Score = 71.4 bits (172), Expect = 2e-11
Identities = 89/404 (22%), Positives = 180/404 (44%), Gaps = 64/404 (15%)
Query: 72 LRDYQEEAVERWMRE-----KRGVIVLPTGAGKTIVAMEIIKRL----------SLSTLV 116
LRDYQ++A++ + KR + L TG GKT++ +I +L + +L+
Sbjct: 33 LRDYQQDAIDACVNSIRQGTKRIGVSLATGGGKTVIFSNLINQLRQNYFKERQGNFKSLI 92
Query: 117 IV-------PTLALLEQWKERLEIFGDVGEFSGRKKELKPITVTTYDSAYINAEFLGDKF 169
+V A L++ L++ ++G++ ++ I + ++ +
Sbjct: 93 LVHRRELALQATATLKKIFPDLKVHIEMGKYDCDIEDSDVIVASVQTLIRRLHKYDTNSV 152
Query: 170 FLLIFDECHHLPSEAYRNIA---QMSAAPYRL---GLTAFPERADNLHDLLPDLIGPIVY 223
L+I DE HH + +YR+I + S A ++ G +A ERAD L ++ IVY
Sbjct: 153 NLIIIDEAHHSVANSYRSILDHFKASTAETKIPVIGFSATFERADKR--ALSMVMDKIVY 210
Query: 224 KKAPRELMGT-YLAPYELVRVKVPLSREERAEYLKHYKVFKRYLSESGLRIKSLEDFQKI 282
+ E++ +L + VK+ + +++ LS + + ++ ++
Sbjct: 211 HRGILEMIDDKWLCEAKFTSVKIEADLSDVKSTADDFQLAP--LSS----LMNTKEINEV 264
Query: 283 VMRTGVDNKAFKALRALEEARKIALG-SKAKIEELRKILERHRGEKIIISTRYNELVYEI 341
+++T + K K+L++ + G KA ++ L K+ + + I+T Y
Sbjct: 265 ILKTYLHKKQEKSLKST-----LLFGVDKAHVQSLHKLFKDNG-----INTDY------- 307
Query: 342 SRKFLIPAITHKTSKEERVEILRKFREGKYMAVVSSQVLDEGIDVPDASVGIIISGTGSP 401
+T T + ER I++KF+ G+ +++ + EG D+P+ ++ T S
Sbjct: 308 --------VTSDTKQIERDNIIQKFKNGETEVLMNCGIFTEGTDMPNIDCILLCRPTKSR 359
Query: 402 RELVQRLGRILRPAPGKERAILYELITPGTTEVRISSRRLSGIK 445
L+Q +GR LR K+ + + I + V +S+ L GI+
Sbjct: 360 SLLIQMIGRGLRLHHSKDHCHIIDFIGASSVGV-VSAPTLLGIR 402
>pir||E71481 probable swf/snf helicase - Chlamydia trachomatis (serotype D, strain
UW3/Cx) >gi|3329163|gb|AAC68303.1| (AE001341) SWF/SNF
family helicase [Chlamydia trachomatis]
Length = 1163
Score = 70.6 bits (170), Expect = 3e-11
Identities = 115/462 (24%), Positives = 197/462 (41%), Gaps = 79/462 (17%)
Query: 64 VYDDVEFELRDYQEEAVERWMREKR-----GVIVLPTGAGKTIVAMEIIKRLSLS----- 113
V ++ LR YQ+E V W+ R G++ G GKT+ + + + L
Sbjct: 691 VPSQIQATLRGYQKEGVH-WLERLRKMHLNGILADDMGLGKTLQTIIAVTQSRLEKGGGC 749
Query: 114 TLVIVPTLALLEQWKERLEIFGDV-------GEFSGRKKELKP-----ITVTTYDSAYIN 161
+L+I PT +L+ WKE F G S R+K+L + +T+Y+ +
Sbjct: 750 SLIICPT-SLVYNWKEEFRKFNPEFKTLVVDGIPSQRRKQLASLEEYDVAITSYNLLQKD 808
Query: 162 AEFLGDKFF-LLIFDECHHLPSEAYRNI--AQMSAAPYRLGLTAFP-----ERADNLHD- 212
+ D F ++ DE HH+ + RN +M A +RL LT P E +L D
Sbjct: 809 IDIYKDFLFDYVVLDEAHHIKNRTTRNAKSVKMIRACHRLILTGTPIENSLEELWSLFDF 868
Query: 213 LLPDL-------------IGPIVYKKAPR-ELMGTYLAPYELVRVKVPLSRE----ERAE 254
L+P L IG + KA E + +AP+ L R+K + +
Sbjct: 869 LMPGLLSSYDRFVGKYIRIGNYMGNKADNVEALRRKVAPFILRRMKEDVLEDLPPVSEIL 928
Query: 255 YLKHYKVFKRYLSESGLRIKSLEDFQKIVMRTGVDNKAFKALRALEEARKIAL------- 307
Y H +R L +S + ++ ++V + G + L L ++I
Sbjct: 929 YHCHLTESQRELYQS-YAASARQELSRLVKQEGFERIHIHVLATLTRLKQICCHPAIFAK 987
Query: 308 -----GSKAKIEELRKILER--HRGEKIIISTRYNELVYEISRKFL----IPAITHKTSK 356
G AK + L +L G K ++ ++Y +++ I R+ L IP + S
Sbjct: 988 DTPEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKML-GIIRQDLEAKGIPFVYLDGST 1046
Query: 357 EERVEILRKFRE--GKYMAVVSSQVLDEGIDVPDASVGIIISGTGSPRELVQRLGRILRP 414
+ R+EI+++F E G + +VS + G+++ A I +P Q R+ R
Sbjct: 1047 KNRLEIVQQFNEDPGLLVFLVSLKAGGTGLNLVGADTVIHYDMWWNPAVENQATDRVHR- 1105
Query: 415 APGKERAI-LYELITPGTTEVRISS---RRLSGIKKLESLDD 452
G+ R++ Y+L+T T E +I S R+ +KK+ + DD
Sbjct: 1106 -IGQSRSVSSYKLVTLNTIEEKILSLQNRKKGLVKKVINSDD 1146
>emb|CAB93078.1| (AL357432) putative helicase (fragment) [Streptomyces coelicolor
A3(2)]
Length = 135
Score = 69.1 bits (166), Expect = 1e-10
Identities = 38/114 (33%), Positives = 65/114 (56%), Gaps = 1/114 (0%)
Query: 328 IIISTRYNELVYEISRKFLIPAITHKTSKEERVEILRKFREGKYMAVVSSQVLDEGIDVP 387
I++ +Y + + E+ P I +TS +R ++ FR+G+ +V S+V + ID+P
Sbjct: 1 ILVIGQYIDQLDELGEHLGAPVIKGETSNAQREKLFESFRQGEISVLVVSKVANFSIDLP 60
Query: 388 DASVGIIISGT-GSPRELVQRLGRILRPAPGKERAILYELITPGTTEVRISSRR 440
+A+V I +SGT GS +E QRLGR+LRP +A Y ++ T + ++ R
Sbjct: 61 EATVAIQVSGTFGSRQEEAQRLGRVLRPKADGHQAHFYSVVARDTLDQDFAAHR 114
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.395
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160720877
Number of Sequences: 2977
Number of extensions: 6793279
Number of successful extensions: 22421
Number of sequences better than 1.0e-10: 35
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 22315
Number of HSP's gapped (non-prelim): 58
length of query: 453
length of database: 189,106,746
effective HSP length: 57
effective length of query: 396
effective length of database: 154,992,987
effective search space: 61377222852
effective search space used: 61377222852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)