BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1317 (PAB1317) DE:Hypothetical protein
         (256 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75005 hypothetical protein PAB1317 - Pyrococcus abyssi (st...   515  e-145
pir||H71157 hypothetical protein PH0463 - Pyrococcus horikoshii ...   455  e-127
pir||H70488 conserved hypothetical protein aq_2196 - Aquifex aeo...   167  1e-40
gi|11498073 conserved hypothetical protein [Archaeoglobus fulgid...   164  1e-39
gb|AAK40593.1| Conserved hypothetical protein [Sulfolobus solfat...   155  6e-37
pir||G72461 hypothetical protein APE2338 - Aeropyrum pernix (str...   145  4e-34
pir||A72349 conserved hypothetical protein - Thermotoga maritima...   145  5e-34
sp|Q59045|YG51_METJA HYPOTHETICAL PROTEIN MJ1651 >gi|2128995|pir...   125  4e-28
pir||B71905 hypothetical protein jhp0648 - Helicobacter pylori (...   118  5e-26
gb|AAG18882.1| (AE004991) Vng0300c [Halobacterium sp. NRC-1]          118  7e-26
pir||E64608 conserved hypothetical protein HP0709 - Helicobacter...   118  9e-26

>pir||A75005 hypothetical protein PAB1317 - Pyrococcus abyssi (strain Orsay)
           >gi|5458993|emb|CAB50479.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 256
           
 Score =  515 bits (1312), Expect = e-145
 Identities = 256/256 (100%), Positives = 256/256 (100%)

Query: 1   MITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEG 60
           MITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEG
Sbjct: 1   MITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEG 60

Query: 61  TVHVGVIDPGVGTERRAIVVEGEQYLVVPDNGLATLPLKHIKPKKAYEIIPQEIKKFTGW 120
           TVHVGVIDPGVGTERRAIVVEGEQYLVVPDNGLATLPLKHIKPKKAYEIIPQEIKKFTGW
Sbjct: 61  TVHVGVIDPGVGTERRAIVVEGEQYLVVPDNGLATLPLKHIKPKKAYEIIPQEIKKFTGW 120

Query: 121 RISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWILKVIYVDD 180
           RISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWILKVIYVDD
Sbjct: 121 RISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWILKVIYVDD 180

Query: 181 FGNVILNLEGYERPKFVELLDFNLKLPYLDTYGLVGEGEMLALPGSHDYLEIAVNRGSAA 240
           FGNVILNLEGYERPKFVELLDFNLKLPYLDTYGLVGEGEMLALPGSHDYLEIAVNRGSAA
Sbjct: 181 FGNVILNLEGYERPKFVELLDFNLKLPYLDTYGLVGEGEMLALPGSHDYLEIAVNRGSAA 240

Query: 241 ERLGVKVGDELRVRLL 256
           ERLGVKVGDELRVRLL
Sbjct: 241 ERLGVKVGDELRVRLL 256


>pir||H71157 hypothetical protein PH0463 - Pyrococcus horikoshii
           >gi|3256866|dbj|BAA29549.1| (AP000002) 256aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 256
           
 Score =  455 bits (1157), Expect = e-127
 Identities = 218/256 (85%), Positives = 240/256 (93%)

Query: 1   MITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEG 60
           MITL TDFGL+GPYVGEMKVAML++NP+AKIVDVTHSVTRHSI+EGSFVMEQVVKYSP+G
Sbjct: 1   MITLTTDFGLKGPYVGEMKVAMLRINPNAKIVDVTHSVTRHSILEGSFVMEQVVKYSPKG 60

Query: 61  TVHVGVIDPGVGTERRAIVVEGEQYLVVPDNGLATLPLKHIKPKKAYEIIPQEIKKFTGW 120
           TVHVGVIDPGVGTERRAIV+EG+QYLVVPDNGLATLPLKHIK K  YEIIP +I+KFTGW
Sbjct: 61  TVHVGVIDPGVGTERRAIVIEGDQYLVVPDNGLATLPLKHIKVKSVYEIIPDKIRKFTGW 120

Query: 121 RISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWILKVIYVDD 180
            ISSTFHGRD+FGPA ALI+KG+ PEEFGREIP+DS+VKLN+E RK  DVWILKVIY+DD
Sbjct: 121 EISSTFHGRDIFGPAGALIEKGIHPEEFGREIPVDSIVKLNVEPRKEGDVWILKVIYIDD 180

Query: 181 FGNVILNLEGYERPKFVELLDFNLKLPYLDTYGLVGEGEMLALPGSHDYLEIAVNRGSAA 240
           FGNVILNLE YE+P+ VELLDFNL+LPYL+TYGLV +GEMLALPGSHDYLEIAVN GSAA
Sbjct: 181 FGNVILNLENYEKPRTVELLDFNLRLPYLETYGLVEKGEMLALPGSHDYLEIAVNMGSAA 240

Query: 241 ERLGVKVGDELRVRLL 256
           ERL VKVGDELRVRLL
Sbjct: 241 ERLNVKVGDELRVRLL 256


>pir||H70488 conserved hypothetical protein aq_2196 - Aquifex aeolicus
           >gi|2984390|gb|AAC07908.1| (AE000777) hypothetical
           protein [Aquifex aeolicus]
           Length = 251
           
 Score =  167 bits (419), Expect = 1e-40
 Identities = 99/253 (39%), Positives = 152/253 (59%), Gaps = 10/253 (3%)

Query: 2   ITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEGT 61
           I L+TDFG +  +VG +K  +L +NP  +IVD++H V   +++EG+ +++    Y PE +
Sbjct: 3   IVLLTDFGTKDGFVGAVKGVILSINPSVQIVDLSHEVDSFNVLEGALLLKAHYSYFPEKS 62

Query: 62  VHVGVIDPGVGTERRAIVVEGEQYLVV-PDNGLATLPLKHIKPKKAYEIIPQEIKKFTGW 120
           V VGV+DPGVG+ER+ I+V+ E+Y  V PDNGL  L +K  K  + YEI   + +KFT  
Sbjct: 63  VFVGVVDPGVGSERKGIIVKTEKYFFVGPDNGLFDLVIKEAKDFEVYEI---KNEKFTLP 119

Query: 121 RISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWILKVIYVDD 180
           + ++TFHGRD+F P AA + KGV PEE G  I     +K   E ++  D    ++IY D 
Sbjct: 120 KKNNTFHGRDVFAPVAAYLSKGVKPEEIGPRIEYREKLKFP-EPKREKDFIEGEIIYFDK 178

Query: 181 FGNVILNLEGYERPKFVELLDFNLKLPYLDTYGLVGE-GEMLALPGSHDYLEIAVNRGSA 239
           FGN I N+    +  + E  +  LK+     Y L GE G++ A  GS  ++EI V   +A
Sbjct: 179 FGNAITNVP-CGKYAYAEFREDKLKVV---PYFLAGERGKLNATCGSFGFMEIFVPVDNA 234

Query: 240 AERLGVKVGDELR 252
            E+  +K G++++
Sbjct: 235 REKFNLKEGEKIK 247


>gi|11498073 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7451701|pir||E69307 conserved hypothetical protein
           AF0461 - Archaeoglobus fulgidus
           >gi|2650168|gb|AAB90776.1| (AE001073) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 251
           
 Score =  164 bits (410), Expect = 1e-39
 Identities = 103/250 (41%), Positives = 150/250 (59%), Gaps = 12/250 (4%)

Query: 1   MITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEG 60
           +++L+TDFG    Y G MK  +L + P+A+IVD+THSV   +I++G+F++    +Y    
Sbjct: 3   VVSLLTDFG--DFYPGVMKGVILSLAPEARIVDITHSVEPQNILQGAFLLYHSFRYF-RN 59

Query: 61  TVHVGVIDPGVGTERRAIVVEGEQYLVV-PDNGLATLPLKHIKPKKAYEIIPQEIKKFTG 119
            VHV V+DPGVG+ERRA+V+EG+ +  V PDNG+          K AY  I +EI +  G
Sbjct: 60  AVHVAVVDPGVGSERRALVIEGKNHFFVGPDNGILYPSAVEDGIKAAYS-IKEEISELVG 118

Query: 120 WRISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWI-LKVIYV 178
             +SSTFHGRD+F PAAA++ +G     +  EI  + L KL L    +    +  +V+YV
Sbjct: 119 -ELSSTFHGRDIFAPAAAMVVRG--DYTYFEEINKEELEKLELFDCSIQGNKVRCRVVYV 175

Query: 179 DDFGNVILNLEGYERPKFVELLDFNLKLPYLDTYGLVGEGEMLALPGSHDYLEIAVNRGS 238
           D FGNV+ NL   +   F       ++ P++ TY  V  G+ L+L GS   LE++V  GS
Sbjct: 176 DRFGNVVTNLREVKGKGFYFR---GVEFPFVKTYSDVDVGKPLSLIGSFGTLELSVREGS 232

Query: 239 AAERLGVKVG 248
           AAE LG+K G
Sbjct: 233 AAEMLGIKRG 242


>gb|AAK40593.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 281
           
 Score =  155 bits (387), Expect = 6e-37
 Identities = 89/259 (34%), Positives = 145/259 (55%), Gaps = 11/259 (4%)

Query: 2   ITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEGT 61
           I ++TDFGL   Y G M+  + K+NP+AKI  ++ +    ++I G++++    KY P  T
Sbjct: 11  IAILTDFGLNDNYNGVMEAVIKKINPEAKITYISGNSKPFNLIAGAYLLYTSYKYFPRNT 70

Query: 62  VHVGVIDPGVGTERRAIVVEGEQYLVV-PDNGLATLPLKHIKPKKAYEIIPQEIKKFTGW 120
           + + VIDPGVGT RR ++++ + Y+ + PDNG+    +   +  K  EI  +  K +   
Sbjct: 71  IFLVVIDPGVGTSRRPLIIKTKNYVFIGPDNGVLYPAITSEEIVKIIEI--KNEKLYLAK 128

Query: 121 RISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWILKVIYVDD 180
            IS+TFHGRD+F  AAA I  GV  + FG ++  + L KLN   +        KV+Y+D 
Sbjct: 129 TISNTFHGRDIFSVAAAFISIGVEIDTFGNQVRYEDLTKLNFTYKPSKSEICGKVLYIDH 188

Query: 181 FGN--------VILNLEGYERPKFVELLDFNLKLPYLDTYGLVGEGEMLALPGSHDYLEI 232
           FGN        V+LN   Y+    +++ +   K  ++ T+G   E E+L     +  +EI
Sbjct: 189 FGNVATSIPKEVLLNNFKYDENIEIKVNNSKHKCRFVKTFGYGMENELLIYFNGYFLVEI 248

Query: 233 AVNRGSAAERLGVKVGDEL 251
            +N+GSA ++L V+ GDE+
Sbjct: 249 GINKGSAKDKLNVREGDEI 267


>pir||G72461 hypothetical protein APE2338 - Aeropyrum pernix (strain K1)
           >gi|5106040|dbj|BAA81351.1| (AP000064) 316aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 316
           
 Score =  145 bits (363), Expect = 4e-34
 Identities = 96/287 (33%), Positives = 151/287 (52%), Gaps = 39/287 (13%)

Query: 1   MITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEG 60
           ++ LI+DFG   PY G M+  +  ++ + +I+D+ HS+   S + G++V+    ++ P+G
Sbjct: 7   VVGLISDFG-DSPYTGIMRAVIKSISRELQIIDIDHSIPSFSPLAGAYVVAHTYQWLPKG 65

Query: 61  TVHVGVIDPGVGTERRAIVVEGEQYLVV-PDNGLATLPLKHIKPKKAYEIIPQEIKKFT- 118
           +V V V+DPGVGT R A+ VE E Y+ + PDNG+          K+ Y +  +++     
Sbjct: 66  SVIVAVVDPGVGTSRYALAVETENYVFIGPDNGVLYPAAASDGIKRVYALREKDVNSLAR 125

Query: 119 -----------GWRISSTFHGRDLFGPAAALIDKG-VSPEEFGREIPLDSLVKLNLE--S 164
                       W IS TFHGRD+F PA ALI  G  S EE G EI  + + + +++   
Sbjct: 126 MKTSSTAGTVKPWSISRTFHGRDVFAPAGALIAAGHASLEELGDEIEPERMKRASIDHVE 185

Query: 165 RKVNDVWILKVIYVDDFGNVILNLEGYERPKFVELLDFNLKL---------------PYL 209
           +     +   V+Y+D FGNV L++    RPK    L  NL L                  
Sbjct: 186 KLGPSTFRATVVYIDKFGNVALSI----RPK---KLGINLSLYKSVVLGTHTTSNTIRMG 238

Query: 210 DTYGLVGEGEMLALPGSHDYLEIAVNRGSAAERLGVKVGDELRVRLL 256
            T+G    GE++A   S  +LEIAVNRG+AA++LG+++   + + LL
Sbjct: 239 KTFGDANPGELVAYENSFGHLEIAVNRGNAAKKLGLELEARVEIELL 285


>pir||A72349 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981183|gb|AAD35744.1|AE001739_7 (AE001739)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 263
           
 Score =  145 bits (362), Expect = 5e-34
 Identities = 99/270 (36%), Positives = 147/270 (53%), Gaps = 26/270 (9%)

Query: 1   MITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEG 60
           MI  +TD+GL+  YVG  K  + ++NP A+I+D+TH V   ++ + S V+ +     P  
Sbjct: 1   MIGFLTDWGLKSHYVGVAKAVIKRINPSAEIIDITHEVEPFNVRKASHVLYRASLDFPPS 60

Query: 61  TVHVGVIDPGVGTERRAIVV--EGEQYLVVPDNGLATLPLKHIKPKKAYEIIPQEIKKFT 118
           TV + V+D GVGT R+AIV+  + +QY V PDNG+ T+  +     +  EI  +E+  F 
Sbjct: 61  TVFLVVVDYGVGTSRKAIVMKTKNDQYFVAPDNGVLTVVAEEYGVAEIREIENREL--FY 118

Query: 119 GWRISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLN---LESRKVNDVWILKV 175
               S TFHGRD+F P AA +D G+  E  G  +    ++K+    +E+ KV    I +V
Sbjct: 119 KKNPSFTFHGRDIFAPVAAHLDMGLPLERVGDRLLSYEVLKMRKPVVENEKV----IGEV 174

Query: 176 IYVDDFGNVILNLEGYERPKFVEL-LDFN-----------LKLPYLDTYGLVGEGEMLAL 223
             VD FGNV  N+       F++L +DF+            K      +G V  GE+L  
Sbjct: 175 AIVDTFGNVSTNI---PFDLFLKLSVDFDDVVRVRVGRKEFKAAVAKAFGDVDTGELLVH 231

Query: 224 PGSHDYLEIAVNRGSAAERLGVKVGDELRV 253
           P S  +LEIAVN G A++ L VK GDE+ +
Sbjct: 232 PDSAGFLEIAVNLGDASQVLSVKEGDEIEI 261


>sp|Q59045|YG51_METJA HYPOTHETICAL PROTEIN MJ1651 >gi|2128995|pir||A64506 hypothetical
           protein MJ1651 - Methanococcus jannaschii
           >gi|1592233|gb|AAB99672.1| (U67605) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 263
           
 Score =  125 bits (312), Expect = 4e-28
 Identities = 93/272 (34%), Positives = 146/272 (53%), Gaps = 41/272 (15%)

Query: 1   MITLITDFGLRGPYVGEMKVAML----KVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKY 56
           +ITL TDFG    YVG MK  +L    K N DAKI+D++H +   +I  G++V+   + Y
Sbjct: 12  IITLTTDFGTNEGYVGAMKGRILNILKKYNKDAKIIDISHEIKPFNIYHGAYVLLTAIPY 71

Query: 57  SPEGTVHVGVIDPGVGTERRAIVVEGEQ--YLVVPDNGLATLPLKHIKPKKAYEIIPQEI 114
            P  +VHV VIDP VG+ER++IV+E +   YLV PDNGL T   + +  K+  +I  +  
Sbjct: 72  FPP-SVHVAVIDPTVGSERKSIVIETKSGYYLVGPDNGLFTYVAEKLGIKRIIKIDEERY 130

Query: 115 KKFTGWRISSTFHGRDLFGPAAA--LIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWI 172
           K       SSTFHGRD++    A  LI+ G   EE      LD +VK++ E++K      
Sbjct: 131 KP------SSTFHGRDVYAVVGAEILINNGYDGEE------LDEMVKID-ETKK------ 171

Query: 173 LKVIYVDDFGNVILNLEGYE-----------RPKFVELLDFNLKLPYLDTYGLVGEGEML 221
            +VI++D FGN+I N++  E           + +    ++  +K  ++ +Y    +   +
Sbjct: 172 -RVIHIDRFGNIITNIKKDEVTFKYYDTIMIKIRHKNGIEKIIKCKFVKSY-FEEKNNFI 229

Query: 222 ALPGSHDYLEIAVNRGSAAERLGVKVGDELRV 253
            L  S  +LEI+    +A++ L V   DE+ +
Sbjct: 230 CLINSEGFLEISKFMDNASKLLNVDYLDEIEI 261


>pir||B71905 hypothetical protein jhp0648 - Helicobacter pylori (strain J99)
           >gi|4155200|gb|AAD06224.1| (AE001497) putative
           [Helicobacter pylori J99]
           Length = 300
           
 Score =  118 bits (294), Expect = 5e-26
 Identities = 83/271 (30%), Positives = 143/271 (52%), Gaps = 21/271 (7%)

Query: 2   ITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEGT 61
           + L TDF L+   V  MK     V+ + KI D+TH +  ++I EG++ + Q   Y P+G+
Sbjct: 25  LILQTDFSLKDGAVSAMKGVAFSVDSNLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGS 84

Query: 62  VHVGVIDPGVGTERRAIVVEGE--QYLVVPDNGLATLPLKHIKPKKAYEIIPQEIKKFTG 119
           V V V+DPGVGT R+++V++ +  QY V PDNG  TL  + +      E I ++  +  G
Sbjct: 85  VFVSVVDPGVGTNRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVRE-IDEKANRLKG 143

Query: 120 WRISSTFHGRDLFGPAAALIDKG-VSPEEFGREIPLDSLVKLNLESRKV------NDVWI 172
              S TFHGRD++    A +  G ++ E+ G E+P+  +V++  +  K        ++ I
Sbjct: 144 SEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPI-KVVEIPYQKAKATKGGVKGNIPI 202

Query: 173 LKVIYVDDFGNV---ILNLEGYERPKFVELLDFNL-------KLPYLDTYGLVGEGEMLA 222
           L + Y + + N+   +LN  G +R   V +  F         K+PY+ ++G V EG+ L 
Sbjct: 203 LDIQYGNVWSNISDKLLNQAGIKRNDTVCVTIFKNSKKQYEGKMPYVASFGDVPEGQPLV 262

Query: 223 LPGSHDYLEIAVNRGSAAERLGVKVGDELRV 253
              S   + +A+N  + A++  +K G +  +
Sbjct: 263 YLNSLLNVSVALNMDNFAQKHQIKSGADWNI 293


>gb|AAG18882.1| (AE004991) Vng0300c [Halobacterium sp. NRC-1]
           Length = 239
           
 Score =  118 bits (293), Expect = 7e-26
 Identities = 88/247 (35%), Positives = 128/247 (51%), Gaps = 21/247 (8%)

Query: 18  MKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEGTVHVGVIDPGVGTERRA 77
           MK  +L+   DA++VD+ H + R  +   +F + +VV Y P   VH+ V+DPGVGT+R A
Sbjct: 1   MKGVVLQTT-DARLVDIAHDLPRQDVRAAAFWLREVVPYFPPA-VHLAVVDPGVGTDRSA 58

Query: 78  IVVE-GEQYLVVPDNGLATLPLKHIKPKKA----YEIIPQEIKKFTGWRISSTFHGRDLF 132
           +VV  G   +V PDNG+A    + I    A    +EI  ++         S+TFHGRD+F
Sbjct: 59  VVVRAGSHAIVAPDNGVAVPAARRIAGDAADIDVFEIDVED-------PASATFHGRDVF 111

Query: 133 GPAAALI-DKGVSP-EEFGREIPLDSLVKLNLESRKVNDVWIL-KVIYVDDFGNVILNLE 189
            PAAA I ++GV   +++    P     +++  +  V D      VI VD FGN I NL 
Sbjct: 112 APAAADIHERGVDTFDQYPEYEPTADYERVSFPAPAVTDGGAAGTVIAVDGFGNAITNLP 171

Query: 190 GY---ERPKFVELLDFNLKLPYLDTYGLVGEGEMLALPGSHDYLEIAVNRGSAAERLGVK 246
           G    +R      +D  +  P   +Y     G+ L   GSH  +E+AVNRG   +  GV 
Sbjct: 172 GEIVADRVGDTVEVD-GVATPVRRSYAHTDPGQRLLTVGSHGNVELAVNRGRGDDAFGVS 230

Query: 247 VGDELRV 253
            GDE+ V
Sbjct: 231 AGDEVTV 237


>pir||E64608 conserved hypothetical protein HP0709 - Helicobacter pylori
           (strain 26695) >gi|2313836|gb|AAD07762.1| (AE000584)
           conserved hypothetical protein [Helicobacter pylori
           26695]
           Length = 300
           
 Score =  118 bits (292), Expect = 9e-26
 Identities = 81/271 (29%), Positives = 140/271 (50%), Gaps = 21/271 (7%)

Query: 2   ITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEGT 61
           + L TDF L+   V  MK     V+   KI D+TH +  ++I EG++ + Q   Y P+G+
Sbjct: 25  LILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGS 84

Query: 62  VHVGVIDPGVGTERRAIVVEGE--QYLVVPDNGLATLPLKHIKPKKAYEIIPQEIKKFTG 119
           V V V+DPGVGT+R+++V++ +  QY V PDNG  TL  + +      E I ++  +  G
Sbjct: 85  VFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVRE-IDEKANRLKG 143

Query: 120 WRISSTFHGRDLFGPAAALIDKG-VSPEEFGREIPLDSLVKLNLESRKV------NDVWI 172
              S TFHGRD++    A +  G ++ E+ G E+P   +V++  +  K        ++ I
Sbjct: 144 SEKSYTFHGRDVYAYTGARLASGAITFEQVGPELP-PKVVEIPYQKAKATKGEVKGNIPI 202

Query: 173 LKVIYVDDFGNVILNLEGYERPKFVELL----------DFNLKLPYLDTYGLVGEGEMLA 222
           L + Y + + N+   L    + K  + L           +  K+PY+ ++G V EG+ L 
Sbjct: 203 LDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQPLV 262

Query: 223 LPGSHDYLEIAVNRGSAAERLGVKVGDELRV 253
              S   + +A+NR + A++  +K G +  +
Sbjct: 263 YLNSLLNVSVALNRDNFAQKYQIKSGADWNI 293


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.142    0.412 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98423158
Number of Sequences: 2977
Number of extensions: 4297618
Number of successful extensions: 8672
Number of sequences better than 1.0e-10: 11
Number of HSP's better than  0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8633
Number of HSP's gapped (non-prelim): 11
length of query: 256
length of database: 189,106,746
effective HSP length: 53
effective length of query: 203
effective length of database: 157,386,935
effective search space: 31949547805
effective search space used: 31949547805
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)