BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1317 (PAB1317) DE:Hypothetical protein
(256 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75005 hypothetical protein PAB1317 - Pyrococcus abyssi (st... 515 e-145
pir||H71157 hypothetical protein PH0463 - Pyrococcus horikoshii ... 455 e-127
pir||H70488 conserved hypothetical protein aq_2196 - Aquifex aeo... 167 1e-40
gi|11498073 conserved hypothetical protein [Archaeoglobus fulgid... 164 1e-39
gb|AAK40593.1| Conserved hypothetical protein [Sulfolobus solfat... 155 6e-37
pir||G72461 hypothetical protein APE2338 - Aeropyrum pernix (str... 145 4e-34
pir||A72349 conserved hypothetical protein - Thermotoga maritima... 145 5e-34
sp|Q59045|YG51_METJA HYPOTHETICAL PROTEIN MJ1651 >gi|2128995|pir... 125 4e-28
pir||B71905 hypothetical protein jhp0648 - Helicobacter pylori (... 118 5e-26
gb|AAG18882.1| (AE004991) Vng0300c [Halobacterium sp. NRC-1] 118 7e-26
pir||E64608 conserved hypothetical protein HP0709 - Helicobacter... 118 9e-26
>pir||A75005 hypothetical protein PAB1317 - Pyrococcus abyssi (strain Orsay)
>gi|5458993|emb|CAB50479.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 256
Score = 515 bits (1312), Expect = e-145
Identities = 256/256 (100%), Positives = 256/256 (100%)
Query: 1 MITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEG 60
MITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEG
Sbjct: 1 MITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEG 60
Query: 61 TVHVGVIDPGVGTERRAIVVEGEQYLVVPDNGLATLPLKHIKPKKAYEIIPQEIKKFTGW 120
TVHVGVIDPGVGTERRAIVVEGEQYLVVPDNGLATLPLKHIKPKKAYEIIPQEIKKFTGW
Sbjct: 61 TVHVGVIDPGVGTERRAIVVEGEQYLVVPDNGLATLPLKHIKPKKAYEIIPQEIKKFTGW 120
Query: 121 RISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWILKVIYVDD 180
RISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWILKVIYVDD
Sbjct: 121 RISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWILKVIYVDD 180
Query: 181 FGNVILNLEGYERPKFVELLDFNLKLPYLDTYGLVGEGEMLALPGSHDYLEIAVNRGSAA 240
FGNVILNLEGYERPKFVELLDFNLKLPYLDTYGLVGEGEMLALPGSHDYLEIAVNRGSAA
Sbjct: 181 FGNVILNLEGYERPKFVELLDFNLKLPYLDTYGLVGEGEMLALPGSHDYLEIAVNRGSAA 240
Query: 241 ERLGVKVGDELRVRLL 256
ERLGVKVGDELRVRLL
Sbjct: 241 ERLGVKVGDELRVRLL 256
>pir||H71157 hypothetical protein PH0463 - Pyrococcus horikoshii
>gi|3256866|dbj|BAA29549.1| (AP000002) 256aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 256
Score = 455 bits (1157), Expect = e-127
Identities = 218/256 (85%), Positives = 240/256 (93%)
Query: 1 MITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEG 60
MITL TDFGL+GPYVGEMKVAML++NP+AKIVDVTHSVTRHSI+EGSFVMEQVVKYSP+G
Sbjct: 1 MITLTTDFGLKGPYVGEMKVAMLRINPNAKIVDVTHSVTRHSILEGSFVMEQVVKYSPKG 60
Query: 61 TVHVGVIDPGVGTERRAIVVEGEQYLVVPDNGLATLPLKHIKPKKAYEIIPQEIKKFTGW 120
TVHVGVIDPGVGTERRAIV+EG+QYLVVPDNGLATLPLKHIK K YEIIP +I+KFTGW
Sbjct: 61 TVHVGVIDPGVGTERRAIVIEGDQYLVVPDNGLATLPLKHIKVKSVYEIIPDKIRKFTGW 120
Query: 121 RISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWILKVIYVDD 180
ISSTFHGRD+FGPA ALI+KG+ PEEFGREIP+DS+VKLN+E RK DVWILKVIY+DD
Sbjct: 121 EISSTFHGRDIFGPAGALIEKGIHPEEFGREIPVDSIVKLNVEPRKEGDVWILKVIYIDD 180
Query: 181 FGNVILNLEGYERPKFVELLDFNLKLPYLDTYGLVGEGEMLALPGSHDYLEIAVNRGSAA 240
FGNVILNLE YE+P+ VELLDFNL+LPYL+TYGLV +GEMLALPGSHDYLEIAVN GSAA
Sbjct: 181 FGNVILNLENYEKPRTVELLDFNLRLPYLETYGLVEKGEMLALPGSHDYLEIAVNMGSAA 240
Query: 241 ERLGVKVGDELRVRLL 256
ERL VKVGDELRVRLL
Sbjct: 241 ERLNVKVGDELRVRLL 256
>pir||H70488 conserved hypothetical protein aq_2196 - Aquifex aeolicus
>gi|2984390|gb|AAC07908.1| (AE000777) hypothetical
protein [Aquifex aeolicus]
Length = 251
Score = 167 bits (419), Expect = 1e-40
Identities = 99/253 (39%), Positives = 152/253 (59%), Gaps = 10/253 (3%)
Query: 2 ITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEGT 61
I L+TDFG + +VG +K +L +NP +IVD++H V +++EG+ +++ Y PE +
Sbjct: 3 IVLLTDFGTKDGFVGAVKGVILSINPSVQIVDLSHEVDSFNVLEGALLLKAHYSYFPEKS 62
Query: 62 VHVGVIDPGVGTERRAIVVEGEQYLVV-PDNGLATLPLKHIKPKKAYEIIPQEIKKFTGW 120
V VGV+DPGVG+ER+ I+V+ E+Y V PDNGL L +K K + YEI + +KFT
Sbjct: 63 VFVGVVDPGVGSERKGIIVKTEKYFFVGPDNGLFDLVIKEAKDFEVYEI---KNEKFTLP 119
Query: 121 RISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWILKVIYVDD 180
+ ++TFHGRD+F P AA + KGV PEE G I +K E ++ D ++IY D
Sbjct: 120 KKNNTFHGRDVFAPVAAYLSKGVKPEEIGPRIEYREKLKFP-EPKREKDFIEGEIIYFDK 178
Query: 181 FGNVILNLEGYERPKFVELLDFNLKLPYLDTYGLVGE-GEMLALPGSHDYLEIAVNRGSA 239
FGN I N+ + + E + LK+ Y L GE G++ A GS ++EI V +A
Sbjct: 179 FGNAITNVP-CGKYAYAEFREDKLKVV---PYFLAGERGKLNATCGSFGFMEIFVPVDNA 234
Query: 240 AERLGVKVGDELR 252
E+ +K G++++
Sbjct: 235 REKFNLKEGEKIK 247
>gi|11498073 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451701|pir||E69307 conserved hypothetical protein
AF0461 - Archaeoglobus fulgidus
>gi|2650168|gb|AAB90776.1| (AE001073) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 251
Score = 164 bits (410), Expect = 1e-39
Identities = 103/250 (41%), Positives = 150/250 (59%), Gaps = 12/250 (4%)
Query: 1 MITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEG 60
+++L+TDFG Y G MK +L + P+A+IVD+THSV +I++G+F++ +Y
Sbjct: 3 VVSLLTDFG--DFYPGVMKGVILSLAPEARIVDITHSVEPQNILQGAFLLYHSFRYF-RN 59
Query: 61 TVHVGVIDPGVGTERRAIVVEGEQYLVV-PDNGLATLPLKHIKPKKAYEIIPQEIKKFTG 119
VHV V+DPGVG+ERRA+V+EG+ + V PDNG+ K AY I +EI + G
Sbjct: 60 AVHVAVVDPGVGSERRALVIEGKNHFFVGPDNGILYPSAVEDGIKAAYS-IKEEISELVG 118
Query: 120 WRISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWI-LKVIYV 178
+SSTFHGRD+F PAAA++ +G + EI + L KL L + + +V+YV
Sbjct: 119 -ELSSTFHGRDIFAPAAAMVVRG--DYTYFEEINKEELEKLELFDCSIQGNKVRCRVVYV 175
Query: 179 DDFGNVILNLEGYERPKFVELLDFNLKLPYLDTYGLVGEGEMLALPGSHDYLEIAVNRGS 238
D FGNV+ NL + F ++ P++ TY V G+ L+L GS LE++V GS
Sbjct: 176 DRFGNVVTNLREVKGKGFYFR---GVEFPFVKTYSDVDVGKPLSLIGSFGTLELSVREGS 232
Query: 239 AAERLGVKVG 248
AAE LG+K G
Sbjct: 233 AAEMLGIKRG 242
>gb|AAK40593.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 281
Score = 155 bits (387), Expect = 6e-37
Identities = 89/259 (34%), Positives = 145/259 (55%), Gaps = 11/259 (4%)
Query: 2 ITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEGT 61
I ++TDFGL Y G M+ + K+NP+AKI ++ + ++I G++++ KY P T
Sbjct: 11 IAILTDFGLNDNYNGVMEAVIKKINPEAKITYISGNSKPFNLIAGAYLLYTSYKYFPRNT 70
Query: 62 VHVGVIDPGVGTERRAIVVEGEQYLVV-PDNGLATLPLKHIKPKKAYEIIPQEIKKFTGW 120
+ + VIDPGVGT RR ++++ + Y+ + PDNG+ + + K EI + K +
Sbjct: 71 IFLVVIDPGVGTSRRPLIIKTKNYVFIGPDNGVLYPAITSEEIVKIIEI--KNEKLYLAK 128
Query: 121 RISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWILKVIYVDD 180
IS+TFHGRD+F AAA I GV + FG ++ + L KLN + KV+Y+D
Sbjct: 129 TISNTFHGRDIFSVAAAFISIGVEIDTFGNQVRYEDLTKLNFTYKPSKSEICGKVLYIDH 188
Query: 181 FGN--------VILNLEGYERPKFVELLDFNLKLPYLDTYGLVGEGEMLALPGSHDYLEI 232
FGN V+LN Y+ +++ + K ++ T+G E E+L + +EI
Sbjct: 189 FGNVATSIPKEVLLNNFKYDENIEIKVNNSKHKCRFVKTFGYGMENELLIYFNGYFLVEI 248
Query: 233 AVNRGSAAERLGVKVGDEL 251
+N+GSA ++L V+ GDE+
Sbjct: 249 GINKGSAKDKLNVREGDEI 267
>pir||G72461 hypothetical protein APE2338 - Aeropyrum pernix (strain K1)
>gi|5106040|dbj|BAA81351.1| (AP000064) 316aa long
hypothetical protein [Aeropyrum pernix]
Length = 316
Score = 145 bits (363), Expect = 4e-34
Identities = 96/287 (33%), Positives = 151/287 (52%), Gaps = 39/287 (13%)
Query: 1 MITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEG 60
++ LI+DFG PY G M+ + ++ + +I+D+ HS+ S + G++V+ ++ P+G
Sbjct: 7 VVGLISDFG-DSPYTGIMRAVIKSISRELQIIDIDHSIPSFSPLAGAYVVAHTYQWLPKG 65
Query: 61 TVHVGVIDPGVGTERRAIVVEGEQYLVV-PDNGLATLPLKHIKPKKAYEIIPQEIKKFT- 118
+V V V+DPGVGT R A+ VE E Y+ + PDNG+ K+ Y + +++
Sbjct: 66 SVIVAVVDPGVGTSRYALAVETENYVFIGPDNGVLYPAAASDGIKRVYALREKDVNSLAR 125
Query: 119 -----------GWRISSTFHGRDLFGPAAALIDKG-VSPEEFGREIPLDSLVKLNLE--S 164
W IS TFHGRD+F PA ALI G S EE G EI + + + +++
Sbjct: 126 MKTSSTAGTVKPWSISRTFHGRDVFAPAGALIAAGHASLEELGDEIEPERMKRASIDHVE 185
Query: 165 RKVNDVWILKVIYVDDFGNVILNLEGYERPKFVELLDFNLKL---------------PYL 209
+ + V+Y+D FGNV L++ RPK L NL L
Sbjct: 186 KLGPSTFRATVVYIDKFGNVALSI----RPK---KLGINLSLYKSVVLGTHTTSNTIRMG 238
Query: 210 DTYGLVGEGEMLALPGSHDYLEIAVNRGSAAERLGVKVGDELRVRLL 256
T+G GE++A S +LEIAVNRG+AA++LG+++ + + LL
Sbjct: 239 KTFGDANPGELVAYENSFGHLEIAVNRGNAAKKLGLELEARVEIELL 285
>pir||A72349 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981183|gb|AAD35744.1|AE001739_7 (AE001739)
conserved hypothetical protein [Thermotoga maritima]
Length = 263
Score = 145 bits (362), Expect = 5e-34
Identities = 99/270 (36%), Positives = 147/270 (53%), Gaps = 26/270 (9%)
Query: 1 MITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEG 60
MI +TD+GL+ YVG K + ++NP A+I+D+TH V ++ + S V+ + P
Sbjct: 1 MIGFLTDWGLKSHYVGVAKAVIKRINPSAEIIDITHEVEPFNVRKASHVLYRASLDFPPS 60
Query: 61 TVHVGVIDPGVGTERRAIVV--EGEQYLVVPDNGLATLPLKHIKPKKAYEIIPQEIKKFT 118
TV + V+D GVGT R+AIV+ + +QY V PDNG+ T+ + + EI +E+ F
Sbjct: 61 TVFLVVVDYGVGTSRKAIVMKTKNDQYFVAPDNGVLTVVAEEYGVAEIREIENREL--FY 118
Query: 119 GWRISSTFHGRDLFGPAAALIDKGVSPEEFGREIPLDSLVKLN---LESRKVNDVWILKV 175
S TFHGRD+F P AA +D G+ E G + ++K+ +E+ KV I +V
Sbjct: 119 KKNPSFTFHGRDIFAPVAAHLDMGLPLERVGDRLLSYEVLKMRKPVVENEKV----IGEV 174
Query: 176 IYVDDFGNVILNLEGYERPKFVEL-LDFN-----------LKLPYLDTYGLVGEGEMLAL 223
VD FGNV N+ F++L +DF+ K +G V GE+L
Sbjct: 175 AIVDTFGNVSTNI---PFDLFLKLSVDFDDVVRVRVGRKEFKAAVAKAFGDVDTGELLVH 231
Query: 224 PGSHDYLEIAVNRGSAAERLGVKVGDELRV 253
P S +LEIAVN G A++ L VK GDE+ +
Sbjct: 232 PDSAGFLEIAVNLGDASQVLSVKEGDEIEI 261
>sp|Q59045|YG51_METJA HYPOTHETICAL PROTEIN MJ1651 >gi|2128995|pir||A64506 hypothetical
protein MJ1651 - Methanococcus jannaschii
>gi|1592233|gb|AAB99672.1| (U67605) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 263
Score = 125 bits (312), Expect = 4e-28
Identities = 93/272 (34%), Positives = 146/272 (53%), Gaps = 41/272 (15%)
Query: 1 MITLITDFGLRGPYVGEMKVAML----KVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKY 56
+ITL TDFG YVG MK +L K N DAKI+D++H + +I G++V+ + Y
Sbjct: 12 IITLTTDFGTNEGYVGAMKGRILNILKKYNKDAKIIDISHEIKPFNIYHGAYVLLTAIPY 71
Query: 57 SPEGTVHVGVIDPGVGTERRAIVVEGEQ--YLVVPDNGLATLPLKHIKPKKAYEIIPQEI 114
P +VHV VIDP VG+ER++IV+E + YLV PDNGL T + + K+ +I +
Sbjct: 72 FPP-SVHVAVIDPTVGSERKSIVIETKSGYYLVGPDNGLFTYVAEKLGIKRIIKIDEERY 130
Query: 115 KKFTGWRISSTFHGRDLFGPAAA--LIDKGVSPEEFGREIPLDSLVKLNLESRKVNDVWI 172
K SSTFHGRD++ A LI+ G EE LD +VK++ E++K
Sbjct: 131 KP------SSTFHGRDVYAVVGAEILINNGYDGEE------LDEMVKID-ETKK------ 171
Query: 173 LKVIYVDDFGNVILNLEGYE-----------RPKFVELLDFNLKLPYLDTYGLVGEGEML 221
+VI++D FGN+I N++ E + + ++ +K ++ +Y + +
Sbjct: 172 -RVIHIDRFGNIITNIKKDEVTFKYYDTIMIKIRHKNGIEKIIKCKFVKSY-FEEKNNFI 229
Query: 222 ALPGSHDYLEIAVNRGSAAERLGVKVGDELRV 253
L S +LEI+ +A++ L V DE+ +
Sbjct: 230 CLINSEGFLEISKFMDNASKLLNVDYLDEIEI 261
>pir||B71905 hypothetical protein jhp0648 - Helicobacter pylori (strain J99)
>gi|4155200|gb|AAD06224.1| (AE001497) putative
[Helicobacter pylori J99]
Length = 300
Score = 118 bits (294), Expect = 5e-26
Identities = 83/271 (30%), Positives = 143/271 (52%), Gaps = 21/271 (7%)
Query: 2 ITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEGT 61
+ L TDF L+ V MK V+ + KI D+TH + ++I EG++ + Q Y P+G+
Sbjct: 25 LILQTDFSLKDGAVSAMKGVAFSVDSNLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGS 84
Query: 62 VHVGVIDPGVGTERRAIVVEGE--QYLVVPDNGLATLPLKHIKPKKAYEIIPQEIKKFTG 119
V V V+DPGVGT R+++V++ + QY V PDNG TL + + E I ++ + G
Sbjct: 85 VFVSVVDPGVGTNRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVRE-IDEKANRLKG 143
Query: 120 WRISSTFHGRDLFGPAAALIDKG-VSPEEFGREIPLDSLVKLNLESRKV------NDVWI 172
S TFHGRD++ A + G ++ E+ G E+P+ +V++ + K ++ I
Sbjct: 144 SEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPI-KVVEIPYQKAKATKGGVKGNIPI 202
Query: 173 LKVIYVDDFGNV---ILNLEGYERPKFVELLDFNL-------KLPYLDTYGLVGEGEMLA 222
L + Y + + N+ +LN G +R V + F K+PY+ ++G V EG+ L
Sbjct: 203 LDIQYGNVWSNISDKLLNQAGIKRNDTVCVTIFKNSKKQYEGKMPYVASFGDVPEGQPLV 262
Query: 223 LPGSHDYLEIAVNRGSAAERLGVKVGDELRV 253
S + +A+N + A++ +K G + +
Sbjct: 263 YLNSLLNVSVALNMDNFAQKHQIKSGADWNI 293
>gb|AAG18882.1| (AE004991) Vng0300c [Halobacterium sp. NRC-1]
Length = 239
Score = 118 bits (293), Expect = 7e-26
Identities = 88/247 (35%), Positives = 128/247 (51%), Gaps = 21/247 (8%)
Query: 18 MKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEGTVHVGVIDPGVGTERRA 77
MK +L+ DA++VD+ H + R + +F + +VV Y P VH+ V+DPGVGT+R A
Sbjct: 1 MKGVVLQTT-DARLVDIAHDLPRQDVRAAAFWLREVVPYFPPA-VHLAVVDPGVGTDRSA 58
Query: 78 IVVE-GEQYLVVPDNGLATLPLKHIKPKKA----YEIIPQEIKKFTGWRISSTFHGRDLF 132
+VV G +V PDNG+A + I A +EI ++ S+TFHGRD+F
Sbjct: 59 VVVRAGSHAIVAPDNGVAVPAARRIAGDAADIDVFEIDVED-------PASATFHGRDVF 111
Query: 133 GPAAALI-DKGVSP-EEFGREIPLDSLVKLNLESRKVNDVWIL-KVIYVDDFGNVILNLE 189
PAAA I ++GV +++ P +++ + V D VI VD FGN I NL
Sbjct: 112 APAAADIHERGVDTFDQYPEYEPTADYERVSFPAPAVTDGGAAGTVIAVDGFGNAITNLP 171
Query: 190 GY---ERPKFVELLDFNLKLPYLDTYGLVGEGEMLALPGSHDYLEIAVNRGSAAERLGVK 246
G +R +D + P +Y G+ L GSH +E+AVNRG + GV
Sbjct: 172 GEIVADRVGDTVEVD-GVATPVRRSYAHTDPGQRLLTVGSHGNVELAVNRGRGDDAFGVS 230
Query: 247 VGDELRV 253
GDE+ V
Sbjct: 231 AGDEVTV 237
>pir||E64608 conserved hypothetical protein HP0709 - Helicobacter pylori
(strain 26695) >gi|2313836|gb|AAD07762.1| (AE000584)
conserved hypothetical protein [Helicobacter pylori
26695]
Length = 300
Score = 118 bits (292), Expect = 9e-26
Identities = 81/271 (29%), Positives = 140/271 (50%), Gaps = 21/271 (7%)
Query: 2 ITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEGT 61
+ L TDF L+ V MK V+ KI D+TH + ++I EG++ + Q Y P+G+
Sbjct: 25 LILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGS 84
Query: 62 VHVGVIDPGVGTERRAIVVEGE--QYLVVPDNGLATLPLKHIKPKKAYEIIPQEIKKFTG 119
V V V+DPGVGT+R+++V++ + QY V PDNG TL + + E I ++ + G
Sbjct: 85 VFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVRE-IDEKANRLKG 143
Query: 120 WRISSTFHGRDLFGPAAALIDKG-VSPEEFGREIPLDSLVKLNLESRKV------NDVWI 172
S TFHGRD++ A + G ++ E+ G E+P +V++ + K ++ I
Sbjct: 144 SEKSYTFHGRDVYAYTGARLASGAITFEQVGPELP-PKVVEIPYQKAKATKGEVKGNIPI 202
Query: 173 LKVIYVDDFGNVILNLEGYERPKFVELL----------DFNLKLPYLDTYGLVGEGEMLA 222
L + Y + + N+ L + K + L + K+PY+ ++G V EG+ L
Sbjct: 203 LDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQPLV 262
Query: 223 LPGSHDYLEIAVNRGSAAERLGVKVGDELRV 253
S + +A+NR + A++ +K G + +
Sbjct: 263 YLNSLLNVSVALNRDNFAQKYQIKSGADWNI 293
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.142 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98423158
Number of Sequences: 2977
Number of extensions: 4297618
Number of successful extensions: 8672
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8633
Number of HSP's gapped (non-prelim): 11
length of query: 256
length of database: 189,106,746
effective HSP length: 53
effective length of query: 203
effective length of database: 157,386,935
effective search space: 31949547805
effective search space used: 31949547805
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)