BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1319 (PAB1319) DE:Hypothetical protein
         (188 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75004 hypothetical protein PAB1319 - Pyrococcus abyssi (st...   391  e-108
sp|Q58028|Y611_METJA HYPOTHETICAL PROTEIN MJ0611 >gi|2129104|pir...   123  1e-27
pir||A69232 conserved hypothetical protein MTH986 - Methanobacte...   111  8e-24
emb|CAC11702.1| (AL445064) conserved hypothetical membrane prote...   109  2e-23
gb|AAK40787.1| Conserved hypothetical protein [Sulfolobus solfat...    98  8e-20
pir||A72499 hypothetical protein APE1967 - Aeropyrum pernix (str...    82  7e-15

>pir||F75004 hypothetical protein PAB1319 - Pyrococcus abyssi (strain Orsay)
           >gi|5458990|emb|CAB50476.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 188
           
 Score =  391 bits (995), Expect = e-108
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 1   MQGRELEDLLVSFLVLLLLFSDFSPKLIPYVTPALFTAFVLHELAHRQVARYFGYYSYYK 60
           MQGRELEDLLVSFLVLLLLFSDFSPKLIPYVTPALFTAFVLHELAHRQVARYFGYYSYYK
Sbjct: 1   MQGRELEDLLVSFLVLLLLFSDFSPKLIPYVTPALFTAFVLHELAHRQVARYFGYYSYYK 60

Query: 61  RWDLGIALALIFGMFTKLLTGSTWVFAAVGSVYIYAPYQYWVDKRSEGIIALSGPITNII 120
           RWDLGIALALIFGMFTKLLTGSTWVFAAVGSVYIYAPYQYWVDKRSEGIIALSGPITNII
Sbjct: 61  RWDLGIALALIFGMFTKLLTGSTWVFAAVGSVYIYAPYQYWVDKRSEGIIALSGPITNII 120

Query: 121 VAILGYVLIKVISLGSWFWILYYMTKVNAWLAFFNLLPFPPLDGFKVFRWNVSYWAIVFG 180
           VAILGYVLIKVISLGSWFWILYYMTKVNAWLAFFNLLPFPPLDGFKVFRWNVSYWAIVFG
Sbjct: 121 VAILGYVLIKVISLGSWFWILYYMTKVNAWLAFFNLLPFPPLDGFKVFRWNVSYWAIVFG 180

Query: 181 VSFMLYYL 188
           VSFMLYYL
Sbjct: 181 VSFMLYYL 188


>sp|Q58028|Y611_METJA HYPOTHETICAL PROTEIN MJ0611 >gi|2129104|pir||C64376 membrane
           protein homolog - Methanococcus jannaschii
           >gi|1591321|gb|AAB98604.1| (U67509) conserved
           hypothetical integral membrane protein [Methanococcus
           jannaschii]
           Length = 191
           
 Score =  123 bits (306), Expect = 1e-27
 Identities = 75/190 (39%), Positives = 110/190 (57%), Gaps = 14/190 (7%)

Query: 4   RELEDLLVSFLVLLLLFS--DFSPKLIPYVTPALFTAFVLHELAHRQVARYFGYYSYYKR 61
           RE+ DL +S L +  +FS  +FS  +      A+ + F+ HEL HR VAR +G +S ++ 
Sbjct: 9   REIIDLTISVLAIAFIFSYPNFSILVFIISLIAVGSGFIFHELMHRTVARKYGAWSEFRA 68

Query: 62  WDLGIALALIFGMFTKLLTGSTWVFAAVGSVYIYAPYQYWVDKRSEGIIALSGPITNIIV 121
           W  G    LI G   KL+ G+T  F A G+VYIY  Y   +     G IAL+GP+TN+ +
Sbjct: 69  WYEG----LILGFILKLVFGAT--FIAPGAVYIYKDY---LTPEENGKIALAGPLTNVAL 119

Query: 122 AILGYVLIKVISLGSW-FWILYYMTKVNAWLAFFNLLPFPPLDGFKVFRWNVSYWAIVF- 179
           A + ++L+ +   GS  +WI  +   +N +LA FN+LP PP DG KV +WN   WAIV  
Sbjct: 120 AFVFFILMLIFKPGSLLYWIGIFGFHINLFLAGFNMLPIPPFDGEKVLKWNPFIWAIVGL 179

Query: 180 -GVSFMLYYL 188
             + +MLY +
Sbjct: 180 PLIGYMLYMM 189


>pir||A69232 conserved hypothetical protein MTH986 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622087|gb|AAB85483.1| (AE000872) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 199
           
 Score =  111 bits (274), Expect = 8e-24
 Identities = 70/191 (36%), Positives = 111/191 (57%), Gaps = 23/191 (12%)

Query: 5   ELEDLLVSFLVLLLLFSD-FSPK-------LIPYVTPALFTAFVLHELAHRQVARYFGYY 56
           E+ D+LVS +V+  +F+  FS K       L+P     +   FVLHE+AH+ +A  +G++
Sbjct: 16  EVRDILVSMVVIAGVFAYVFSGKNIQTALVLLPATLITVGLGFVLHEIAHKLMAIRYGFW 75

Query: 57  SYYKRWDLGIALALIFGMFTKLLTGSTWVFAAVGSVYIYAPYQYWVDKRSEGIIALSGPI 116
           + Y+ W  G+ LAL+   F        +VFAA G+VYI+  Y   +++   G I+L+GP+
Sbjct: 76  AEYRLWLEGLLLALVTAYFG-------FVFAAPGAVYIHGNY---IERDVNGKISLAGPL 125

Query: 117 TNIIVAILGYVLIKVISLGSWFWILYYMTKVNAWLAFFNLLPFPPLDGFKVFRWNVSYW- 175
           TNII+AI+ ++++  +       + +    VN++LA FNL+P   LDG KVFRWN   W 
Sbjct: 126 TNIILAIM-FLMVSTVLPSPINQVAFLGYAVNSFLALFNLIPLAVLDGAKVFRWNPLIWL 184

Query: 176 ---AIVFGVSF 183
              A  FG++F
Sbjct: 185 LAAAAAFGLTF 195


>emb|CAC11702.1| (AL445064) conserved hypothetical membrane protein [Thermoplasma
           acidophilum]
           Length = 192
           
 Score =  109 bits (271), Expect = 2e-23
 Identities = 75/194 (38%), Positives = 106/194 (53%), Gaps = 25/194 (12%)

Query: 5   ELEDLLVSFLVLLLLF-------SDFSPKLIPYVTPAL-FTAFVLHELAHRQVARYFGYY 56
           E +D+ VS + L   F       S + P  I  V+  +  TAF++HELAHR VAR +G  
Sbjct: 9   EEKDIAVSVIALTAAFAIANRFRSPYGPFFILAVSFLVAVTAFLMHELAHRYVARSYGGI 68

Query: 57  SYYKRWDLGIALALIFGMFTKLLTGSTWVFAAVGSVYIYAPYQYWVDKRSEGIIALSGPI 116
           +Y+K W LG+ LALI    T LL    ++FAA G+V I   Y+    +   G  +L+GP 
Sbjct: 69  AYFKMWPLGLLLALI----TSLLG---FIFAAPGAVNIGGIYR----RDQIGKTSLAGPA 117

Query: 117 TNIIVAILGYVLIKVISLGSWFWILYYMTKVNAWLAFFNLLPFPPLDGFKVFRWNVSYW- 175
            NI + IL Y +     +     I  Y+ ++N W  FFNLLP PPLDG+KVF W++  + 
Sbjct: 118 MNIFLGILFYAISLFTLIPVAIAIFRYVAEMNFWFGFFNLLPIPPLDGYKVFSWDLYVYI 177

Query: 176 -----AIVFGVSFM 184
                A+VF V F+
Sbjct: 178 VSVVIALVFVVLFV 191


>gb|AAK40787.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 200
           
 Score = 97.9 bits (240), Expect = 8e-20
 Identities = 58/166 (34%), Positives = 91/166 (53%), Gaps = 16/166 (9%)

Query: 27  LIPYVTPALFTAFVLHELAHRQVARYFGYYSYYKRWDLGIALALIFGMFTKLLTGSTWVF 86
           +IPY+   L  A + HE+ HRQ AR +G +S   R+ L  +     G +T L+      F
Sbjct: 47  IIPYIVALL--AIIPHEIGHRQAARRYGCFS---RFTLSFS-----GFWTTLILNIIGSF 96

Query: 87  AAVGSVYIYAPYQY----WVDKRSEGIIALSGPITNIIVAILGYVLIKVISLGSWFWILY 142
             VG +  ++ Y       +++  EG  AL+GP+TNIIV  +G +   ++         +
Sbjct: 97  --VGILVFFSGYTSISCGLLNRDVEGKTALAGPLTNIIVGFVGLIGASLVPFSLVGLFFF 154

Query: 143 YMTKVNAWLAFFNLLPFPPLDGFKVFRWNVSYWAIVFGVSFMLYYL 188
            + + N W+AFFNLLPF  LDG K+FRWN+  WA++  ++F L +L
Sbjct: 155 ELARFNFWVAFFNLLPFWVLDGLKIFRWNMIVWAVLIIIAFALTFL 200


>pir||A72499 hypothetical protein APE1967 - Aeropyrum pernix (strain K1)
           >gi|5105665|dbj|BAA80977.1| (AP000063) 183aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 183
           
 Score = 81.5 bits (198), Expect = 7e-15
 Identities = 50/162 (30%), Positives = 81/162 (49%), Gaps = 12/162 (7%)

Query: 30  YVTP---ALFTAFVLHELAHRQVARYFGYYSYYKRWDLGIALALIFGMFTKLLTGSTWVF 86
           +V+P   A+F  FVLHE AH+ VA   G  S +  +  G+ +  + G+   ++       
Sbjct: 31  FVSPDFVAVFLGFVLHEAAHKLVAIRMGMKSEFIAYGPGLLITFLSGLVPFIIV------ 84

Query: 87  AAVGSVYIYAPYQYWVDKRSEGIIALSGPITNIIVAILGYVLIKVISLGSWFWILYYMTK 146
             +   Y+ + +  W   +       +GP  NI +A+   V ++  +  +    L  +  
Sbjct: 85  --LAPGYVRSIHTGWAHPKGFLYSVAAGPAVNIALALAAAVALQ-FAPATLVAYLRAVVD 141

Query: 147 VNAWLAFFNLLPFPPLDGFKVFRWNVSYWAIVFGVSFMLYYL 188
           VNAW AFFNLLP PPLDG K+FR   ++WA++   S +L  L
Sbjct: 142 VNAWFAFFNLLPVPPLDGSKIFRATPTWWAVMIASSILLLAL 183


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.332    0.147    0.486 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74302472
Number of Sequences: 2977
Number of extensions: 3075093
Number of successful extensions: 15902
Number of sequences better than 1.0e-10: 6
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15888
Number of HSP's gapped (non-prelim): 6
length of query: 188
length of database: 189,106,746
effective HSP length: 45
effective length of query: 143
effective length of database: 162,174,831
effective search space: 23191000833
effective search space used: 23191000833
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 163 (67.9 bits)