BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1319 (PAB1319) DE:Hypothetical protein
(188 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75004 hypothetical protein PAB1319 - Pyrococcus abyssi (st... 391 e-108
sp|Q58028|Y611_METJA HYPOTHETICAL PROTEIN MJ0611 >gi|2129104|pir... 123 1e-27
pir||A69232 conserved hypothetical protein MTH986 - Methanobacte... 111 8e-24
emb|CAC11702.1| (AL445064) conserved hypothetical membrane prote... 109 2e-23
gb|AAK40787.1| Conserved hypothetical protein [Sulfolobus solfat... 98 8e-20
pir||A72499 hypothetical protein APE1967 - Aeropyrum pernix (str... 82 7e-15
>pir||F75004 hypothetical protein PAB1319 - Pyrococcus abyssi (strain Orsay)
>gi|5458990|emb|CAB50476.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 188
Score = 391 bits (995), Expect = e-108
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MQGRELEDLLVSFLVLLLLFSDFSPKLIPYVTPALFTAFVLHELAHRQVARYFGYYSYYK 60
MQGRELEDLLVSFLVLLLLFSDFSPKLIPYVTPALFTAFVLHELAHRQVARYFGYYSYYK
Sbjct: 1 MQGRELEDLLVSFLVLLLLFSDFSPKLIPYVTPALFTAFVLHELAHRQVARYFGYYSYYK 60
Query: 61 RWDLGIALALIFGMFTKLLTGSTWVFAAVGSVYIYAPYQYWVDKRSEGIIALSGPITNII 120
RWDLGIALALIFGMFTKLLTGSTWVFAAVGSVYIYAPYQYWVDKRSEGIIALSGPITNII
Sbjct: 61 RWDLGIALALIFGMFTKLLTGSTWVFAAVGSVYIYAPYQYWVDKRSEGIIALSGPITNII 120
Query: 121 VAILGYVLIKVISLGSWFWILYYMTKVNAWLAFFNLLPFPPLDGFKVFRWNVSYWAIVFG 180
VAILGYVLIKVISLGSWFWILYYMTKVNAWLAFFNLLPFPPLDGFKVFRWNVSYWAIVFG
Sbjct: 121 VAILGYVLIKVISLGSWFWILYYMTKVNAWLAFFNLLPFPPLDGFKVFRWNVSYWAIVFG 180
Query: 181 VSFMLYYL 188
VSFMLYYL
Sbjct: 181 VSFMLYYL 188
>sp|Q58028|Y611_METJA HYPOTHETICAL PROTEIN MJ0611 >gi|2129104|pir||C64376 membrane
protein homolog - Methanococcus jannaschii
>gi|1591321|gb|AAB98604.1| (U67509) conserved
hypothetical integral membrane protein [Methanococcus
jannaschii]
Length = 191
Score = 123 bits (306), Expect = 1e-27
Identities = 75/190 (39%), Positives = 110/190 (57%), Gaps = 14/190 (7%)
Query: 4 RELEDLLVSFLVLLLLFS--DFSPKLIPYVTPALFTAFVLHELAHRQVARYFGYYSYYKR 61
RE+ DL +S L + +FS +FS + A+ + F+ HEL HR VAR +G +S ++
Sbjct: 9 REIIDLTISVLAIAFIFSYPNFSILVFIISLIAVGSGFIFHELMHRTVARKYGAWSEFRA 68
Query: 62 WDLGIALALIFGMFTKLLTGSTWVFAAVGSVYIYAPYQYWVDKRSEGIIALSGPITNIIV 121
W G LI G KL+ G+T F A G+VYIY Y + G IAL+GP+TN+ +
Sbjct: 69 WYEG----LILGFILKLVFGAT--FIAPGAVYIYKDY---LTPEENGKIALAGPLTNVAL 119
Query: 122 AILGYVLIKVISLGSW-FWILYYMTKVNAWLAFFNLLPFPPLDGFKVFRWNVSYWAIVF- 179
A + ++L+ + GS +WI + +N +LA FN+LP PP DG KV +WN WAIV
Sbjct: 120 AFVFFILMLIFKPGSLLYWIGIFGFHINLFLAGFNMLPIPPFDGEKVLKWNPFIWAIVGL 179
Query: 180 -GVSFMLYYL 188
+ +MLY +
Sbjct: 180 PLIGYMLYMM 189
>pir||A69232 conserved hypothetical protein MTH986 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622087|gb|AAB85483.1| (AE000872) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 199
Score = 111 bits (274), Expect = 8e-24
Identities = 70/191 (36%), Positives = 111/191 (57%), Gaps = 23/191 (12%)
Query: 5 ELEDLLVSFLVLLLLFSD-FSPK-------LIPYVTPALFTAFVLHELAHRQVARYFGYY 56
E+ D+LVS +V+ +F+ FS K L+P + FVLHE+AH+ +A +G++
Sbjct: 16 EVRDILVSMVVIAGVFAYVFSGKNIQTALVLLPATLITVGLGFVLHEIAHKLMAIRYGFW 75
Query: 57 SYYKRWDLGIALALIFGMFTKLLTGSTWVFAAVGSVYIYAPYQYWVDKRSEGIIALSGPI 116
+ Y+ W G+ LAL+ F +VFAA G+VYI+ Y +++ G I+L+GP+
Sbjct: 76 AEYRLWLEGLLLALVTAYFG-------FVFAAPGAVYIHGNY---IERDVNGKISLAGPL 125
Query: 117 TNIIVAILGYVLIKVISLGSWFWILYYMTKVNAWLAFFNLLPFPPLDGFKVFRWNVSYW- 175
TNII+AI+ ++++ + + + VN++LA FNL+P LDG KVFRWN W
Sbjct: 126 TNIILAIM-FLMVSTVLPSPINQVAFLGYAVNSFLALFNLIPLAVLDGAKVFRWNPLIWL 184
Query: 176 ---AIVFGVSF 183
A FG++F
Sbjct: 185 LAAAAAFGLTF 195
>emb|CAC11702.1| (AL445064) conserved hypothetical membrane protein [Thermoplasma
acidophilum]
Length = 192
Score = 109 bits (271), Expect = 2e-23
Identities = 75/194 (38%), Positives = 106/194 (53%), Gaps = 25/194 (12%)
Query: 5 ELEDLLVSFLVLLLLF-------SDFSPKLIPYVTPAL-FTAFVLHELAHRQVARYFGYY 56
E +D+ VS + L F S + P I V+ + TAF++HELAHR VAR +G
Sbjct: 9 EEKDIAVSVIALTAAFAIANRFRSPYGPFFILAVSFLVAVTAFLMHELAHRYVARSYGGI 68
Query: 57 SYYKRWDLGIALALIFGMFTKLLTGSTWVFAAVGSVYIYAPYQYWVDKRSEGIIALSGPI 116
+Y+K W LG+ LALI T LL ++FAA G+V I Y+ + G +L+GP
Sbjct: 69 AYFKMWPLGLLLALI----TSLLG---FIFAAPGAVNIGGIYR----RDQIGKTSLAGPA 117
Query: 117 TNIIVAILGYVLIKVISLGSWFWILYYMTKVNAWLAFFNLLPFPPLDGFKVFRWNVSYW- 175
NI + IL Y + + I Y+ ++N W FFNLLP PPLDG+KVF W++ +
Sbjct: 118 MNIFLGILFYAISLFTLIPVAIAIFRYVAEMNFWFGFFNLLPIPPLDGYKVFSWDLYVYI 177
Query: 176 -----AIVFGVSFM 184
A+VF V F+
Sbjct: 178 VSVVIALVFVVLFV 191
>gb|AAK40787.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 200
Score = 97.9 bits (240), Expect = 8e-20
Identities = 58/166 (34%), Positives = 91/166 (53%), Gaps = 16/166 (9%)
Query: 27 LIPYVTPALFTAFVLHELAHRQVARYFGYYSYYKRWDLGIALALIFGMFTKLLTGSTWVF 86
+IPY+ L A + HE+ HRQ AR +G +S R+ L + G +T L+ F
Sbjct: 47 IIPYIVALL--AIIPHEIGHRQAARRYGCFS---RFTLSFS-----GFWTTLILNIIGSF 96
Query: 87 AAVGSVYIYAPYQY----WVDKRSEGIIALSGPITNIIVAILGYVLIKVISLGSWFWILY 142
VG + ++ Y +++ EG AL+GP+TNIIV +G + ++ +
Sbjct: 97 --VGILVFFSGYTSISCGLLNRDVEGKTALAGPLTNIIVGFVGLIGASLVPFSLVGLFFF 154
Query: 143 YMTKVNAWLAFFNLLPFPPLDGFKVFRWNVSYWAIVFGVSFMLYYL 188
+ + N W+AFFNLLPF LDG K+FRWN+ WA++ ++F L +L
Sbjct: 155 ELARFNFWVAFFNLLPFWVLDGLKIFRWNMIVWAVLIIIAFALTFL 200
>pir||A72499 hypothetical protein APE1967 - Aeropyrum pernix (strain K1)
>gi|5105665|dbj|BAA80977.1| (AP000063) 183aa long
hypothetical protein [Aeropyrum pernix]
Length = 183
Score = 81.5 bits (198), Expect = 7e-15
Identities = 50/162 (30%), Positives = 81/162 (49%), Gaps = 12/162 (7%)
Query: 30 YVTP---ALFTAFVLHELAHRQVARYFGYYSYYKRWDLGIALALIFGMFTKLLTGSTWVF 86
+V+P A+F FVLHE AH+ VA G S + + G+ + + G+ ++
Sbjct: 31 FVSPDFVAVFLGFVLHEAAHKLVAIRMGMKSEFIAYGPGLLITFLSGLVPFIIV------ 84
Query: 87 AAVGSVYIYAPYQYWVDKRSEGIIALSGPITNIIVAILGYVLIKVISLGSWFWILYYMTK 146
+ Y+ + + W + +GP NI +A+ V ++ + + L +
Sbjct: 85 --LAPGYVRSIHTGWAHPKGFLYSVAAGPAVNIALALAAAVALQ-FAPATLVAYLRAVVD 141
Query: 147 VNAWLAFFNLLPFPPLDGFKVFRWNVSYWAIVFGVSFMLYYL 188
VNAW AFFNLLP PPLDG K+FR ++WA++ S +L L
Sbjct: 142 VNAWFAFFNLLPVPPLDGSKIFRATPTWWAVMIASSILLLAL 183
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.332 0.147 0.486
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74302472
Number of Sequences: 2977
Number of extensions: 3075093
Number of successful extensions: 15902
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15888
Number of HSP's gapped (non-prelim): 6
length of query: 188
length of database: 189,106,746
effective HSP length: 45
effective length of query: 143
effective length of database: 162,174,831
effective search space: 23191000833
effective search space used: 23191000833
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 163 (67.9 bits)