BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1325 (PAB1325) DE:Hypothetical protein
         (147 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75003 hypothetical protein PAB1325 - Pyrococcus abyssi (st...   284  3e-76
pir||B71159 hypothetical protein PH0471 - Pyrococcus horikoshii ...   222  1e-57

>pir||E75003 hypothetical protein PAB1325 - Pyrococcus abyssi (strain Orsay)
           >gi|5458981|emb|CAB50467.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 147
           
 Score =  284 bits (720), Expect = 3e-76
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MMTMDALPISLLILGLLIIILDMMVSAFITPIGIAFSVLGLLLLFKVNFYLSFVISLISA 60
           MMTMDALPISLLILGLLIIILDMMVSAFITPIGIAFSVLGLLLLFKVNFYLSFVISLISA
Sbjct: 1   MMTMDALPISLLILGLLIIILDMMVSAFITPIGIAFSVLGLLLLFKVNFYLSFVISLISA 60

Query: 61  VLSYMAFARMIKRETRDIGREKYTFELKGKTGKVVKVSEDHYLVEVEGDRWIAYSDEELK 120
           VLSYMAFARMIKRETRDIGREKYTFELKGKTGKVVKVSEDHYLVEVEGDRWIAYSDEELK
Sbjct: 61  VLSYMAFARMIKRETRDIGREKYTFELKGKTGKVVKVSEDHYLVEVEGDRWIAYSDEELK 120

Query: 121 VGDTIVVEDVDGVKLKVRKAPRSRSPQ 147
           VGDTIVVEDVDGVKLKVRKAPRSRSPQ
Sbjct: 121 VGDTIVVEDVDGVKLKVRKAPRSRSPQ 147


>pir||B71159 hypothetical protein PH0471 - Pyrococcus horikoshii
           >gi|3256876|dbj|BAA29559.1| (AP000002) 143aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 143
           
 Score =  222 bits (560), Expect = 1e-57
 Identities = 106/136 (77%), Positives = 126/136 (91%)

Query: 6   ALPISLLILGLLIIILDMMVSAFITPIGIAFSVLGLLLLFKVNFYLSFVISLISAVLSYM 65
           A P+SLLILGLLII+LDMM+SAFITPIGIAFSVLGLLLLF VNFYLSF++SLISAV++YM
Sbjct: 6   AFPLSLLILGLLIILLDMMISAFITPIGIAFSVLGLLLLFNVNFYLSFIVSLISAVIAYM 65

Query: 66  AFARMIKRETRDIGREKYTFELKGKTGKVVKVSEDHYLVEVEGDRWIAYSDEELKVGDTI 125
           AFAR+++RET DIG  KYTFELKGK GKVVK++EDHYLVEVEGD+WIAYSDE+L +GD +
Sbjct: 66  AFARVVRRETTDIGGGKYTFELKGKVGKVVKIAEDHYLVEVEGDKWIAYSDEKLSLGDRV 125

Query: 126 VVEDVDGVKLKVRKAP 141
           +V DVDG+KLKV++ P
Sbjct: 126 MVVDVDGLKLKVKRIP 141


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.143    0.393 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46701306
Number of Sequences: 2977
Number of extensions: 1742497
Number of successful extensions: 8357
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8355
Number of HSP's gapped (non-prelim): 2
length of query: 147
length of database: 189,106,746
effective HSP length: 54
effective length of query: 93
effective length of database: 156,788,448
effective search space: 14581325664
effective search space used: 14581325664
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 161 (67.1 bits)