BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1326 1519944 1519519 -142 !not a gene!
         (142 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E71159 hypothetical protein PH0474 - Pyrococcus horikoshii ...   192  2e-48

>pir||E71159 hypothetical protein PH0474 - Pyrococcus horikoshii
           >gi|3256879|dbj|BAA29562.1| (AP000002) 159aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 159
           
 Score =  192 bits (482), Expect = 2e-48
 Identities = 98/142 (69%), Positives = 112/142 (78%)

Query: 1   MLFLNRETVSMAITKTVIGIVTLTIDGSTFIGLMIEAIPITMSISIISAPIMFPTLTLCI 60
           +LFL RETV + IT+ VIGI   T++GST IGL+I+AIP+T+++S ISAPIMFPTLT  I
Sbjct: 18  LLFLKRETVRIIITRRVIGITIFTMEGSTLIGLIIDAIPMTINMSSISAPIMFPTLTFGI 77

Query: 61  PFKAAVRELANSGRDVPIETRVTPITTSGIPAPLAIFTALSTTSSAPRITIPPERNRIAM 120
            F  AV+E ANSGRDVPIET VTPITTSGIP  LAIFTALSTTSSAPRITIPPER RI  
Sbjct: 78  FFSVAVKEFANSGRDVPIETSVTPITTSGIPIALAIFTALSTTSSAPRITIPPERKRIRT 137

Query: 121 SLITFPLDXXXXXXXFTCFLYR 142
           SL+T  LD       FTCFLY+
Sbjct: 138 SLVTLHLDFFSTSSSFTCFLYK 159


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.139    0.396 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40751511
Number of Sequences: 2977
Number of extensions: 1414803
Number of successful extensions: 6358
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6357
Number of HSP's gapped (non-prelim): 1
length of query: 142
length of database: 189,106,746
effective HSP length: 54
effective length of query: 88
effective length of database: 156,788,448
effective search space: 13797383424
effective search space used: 13797383424
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 161 (67.1 bits)