BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1327 1519380 1519072 -103 !not a gene!
         (103 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71159 hypothetical protein PH0475 - Pyrococcus horikoshii ...   106  5e-23

>pir||F71159 hypothetical protein PH0475 - Pyrococcus horikoshii
           >gi|3256880|dbj|BAA29563.1| (AP000002) 140aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 140
           
 Score =  106 bits (263), Expect = 5e-23
 Identities = 59/96 (61%), Positives = 70/96 (72%), Gaps = 1/96 (1%)

Query: 6   IADIPRMRAILAKALPTAFPRAIPLFPLYEDMAETVASGSVVAMLARTSAIRNSLTPNVS 65
           +A+I R+RAI A+ALPTAFP AIPL PLYE++AETV SG VVA LA T AI+NSLT   S
Sbjct: 1   MAEIARIRAIFARALPTAFPIAIPLLPLYEEIAETVTSGRVVATLANTRAIKNSLTLKAS 60

Query: 66  AILVAALTKMSLPFINRMSPRMNTAV-TIATSTLDP 100
           AILVAA T +SLP +   SP  N  + +I T TL P
Sbjct: 61  AILVAASTNISLPLMRSRSPAENIRISSIVTPTLPP 96


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.132    0.361 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29081174
Number of Sequences: 2977
Number of extensions: 811934
Number of successful extensions: 2477
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2476
Number of HSP's gapped (non-prelim): 1
length of query: 103
length of database: 189,106,746
effective HSP length: 57
effective length of query: 46
effective length of database: 154,992,987
effective search space: 7129677402
effective search space used: 7129677402
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 158 (66.0 bits)