BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1329 (cheR) DE:chemotaxis protein methyltransferase (cheR)
(283 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75002 chemotaxis protein methyltransferase (cher) PAB1329 ... 568 e-161
pir||D71160 probable chemotaxis protein methyltransferase - Pyro... 504 e-142
gi|11498642 chemotaxis protein methyltransferase (cheR) [Archaeo... 200 1e-50
sp|Q9WYT5|CHER_THEMA CHEMOTAXIS PROTEIN METHYLTRANSFERASE >gi|74... 175 7e-43
sp|P31105|CHER_BACSU CHEMOTAXIS PROTEIN METHYLTRANSFERASE >gi|74... 163 2e-39
pir||A49538 chemotactic methyltransferase cheRB (EC 2.1.1.-) - B... 160 2e-38
sp|O51069|CHER_BORBU CHEMOTAXIS PROTEIN METHYLTRANSFERASE >gi|74... 155 5e-37
pir||D71300 probable chemotaxis protein methyltransferase (cheR)... 155 7e-37
dbj|BAB05374.1| (AP001512) chemotaxis protein methyltransferase ... 151 8e-36
gb|AAG19389.1| (AE005033) chemotaxis protein; CheR [Halobacteriu... 145 6e-34
gb|AAD41658.1| (AF074971) methyl transferase [Listeria monocytog... 145 8e-34
pir||A83227 probable chemotaxis protein methyltransferase PA3348... 144 1e-33
gb|AAC25078.1| (AF044495) CheR homolog [Agrobacterium tumefaciens] 138 6e-32
pir||S61836 cheR protein - Rhizobium meliloti >gi|534839|gb|AAA8... 134 1e-30
gb|AAA98755.1| (L29642) methyltransferase [Pseudomonas fluorescens] 133 2e-30
pir||E70151 chemotaxis protein methyltransferase (cheR-2) homolo... 129 5e-29
gb|AAB71333.1| (U64519) CheR [Rhodospirillum centenum (Rhodocist... 126 3e-28
gb|AAA23568.1| (M13463) cheR peptide [Escherichia coli] 125 6e-28
sp|P07364|CHER_ECOLI CHEMOTAXIS PROTEIN METHYLTRANSFERASE >gi|74... 122 4e-27
sp|Q02998|YH19_RHOCA HYPOTHETICAL 104.1 KD PROTEIN IN HYPE 3'REG... 122 5e-27
gb|AAD42911.1|U12817_5 (U12817) chemotaxis methyltransferase [Vi... 119 3e-26
sp|P07801|CHER_SALTY CHEMOTAXIS PROTEIN METHYLTRANSFERASE >gi|27... 118 6e-26
pdb|1AF7| Cher From Salmonella Typhimurium 118 6e-26
pdb|1BC5|A Chain A, Chemotaxis Receptor Recognition By Protein M... 118 6e-26
dbj|BAB15839.1| (AB040876) CheR [Enterobacter cloacae] 118 1e-25
pir||S61498 chemotactic methyltransferase homolog pilK - Pseudom... 117 2e-25
emb|CAA07179.1| (AJ006687) CheR [Caulobacter crescentus] 116 3e-25
pir||S47261 cheR protein - Rhodobacter sphaeroides >gi|7433525|p... 116 4e-25
gb|AAD45254.1|AF139167_1 (AF139167) chemotaxis methyl transferas... 115 5e-25
pir||H82106 chemotaxis protein methyltransferase CheR VC2201 [im... 115 5e-25
pir||S70895 chemotactic methyltransferase - Vibrio anguillarum >... 113 2e-24
pir||G82379 chemotaxis protein methyltransferase CheR VCA1091 [i... 111 7e-24
pir||H83623 probable chemotaxis protein methyltransferase PA0175... 111 7e-24
sp|P31759|FRZF_MYXXA PROTEIN METHYLTRANSFERASE FRZF >gi|279478|p... 106 2e-22
pir||T45020 chemotaxis protein methyltransferase cheRII [importe... 100 2e-20
pir||G82205 chemotaxis protein methyltransferase CheR VC1399 [im... 100 2e-20
pir||A83184 probable protein methyltransferase PA3706 [imported]... 98 1e-19
dbj|BAA15705.1| (D90831) Chemotaxis protein methyltransferase (E... 94 2e-18
pir||B48518 PEB1 5'-region hypothetical protein B - Campylobacte... 70 3e-11
sp|P45676|CHER_CAMJE CHEMOTAXIS PROTEIN METHYLTRANSFERASE >gi|11... 68 1e-10
>pir||G75002 chemotaxis protein methyltransferase (cher) PAB1329 - Pyrococcus
abyssi (strain Orsay) >gi|5458975|emb|CAB50461.1|
(AJ248288) chemotaxis protein methyltransferase (cheR)
[Pyrococcus abyssi]
Length = 283
Score = 568 bits (1448), Expect = e-161
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 1 MQSLRGYELIKAEIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREE 60
MQSLRGYELIKAEIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREE
Sbjct: 1 MQSLRGYELIKAEIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREE 60
Query: 61 FEELLFTIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYS 120
FEELLFTIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYS
Sbjct: 61 FEELLFTIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYS 120
Query: 121 IAMSLYEVLGDNLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRIS 180
IAMSLYEVLGDNLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRIS
Sbjct: 121 IAMSLYEVLGDNLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRIS 180
Query: 181 DERYRVKPKLKRLVTFRWFNLLSSVYPKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLED 240
DERYRVKPKLKRLVTFRWFNLLSSVYPKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLED
Sbjct: 181 DERYRVKPKLKRLVTFRWFNLLSSVYPKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLED 240
Query: 241 HGYLILGKTETILGKSANLFKLYDLVAKVYKKNLEVKKQWLGS 283
HGYLILGKTETILGKSANLFKLYDLVAKVYKKNLEVKKQWLGS
Sbjct: 241 HGYLILGKTETILGKSANLFKLYDLVAKVYKKNLEVKKQWLGS 283
>pir||D71160 probable chemotaxis protein methyltransferase - Pyrococcus
horikoshii >gi|3256886|dbj|BAA29569.1| (AP000002) 280aa
long hypothetical chemotaxis protein methyltransferase
[Pyrococcus horikoshii]
Length = 280
Score = 504 bits (1283), Expect = e-142
Identities = 245/277 (88%), Positives = 263/277 (94%)
Query: 1 MQSLRGYELIKAEIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREE 60
MQS R YELIKAEIFKRLGV+ +AYKDSYLQRRIRARMRKLGISDYMEYYK+LK N+EE
Sbjct: 1 MQSQRAYELIKAEIFKRLGVNRTDAYKDSYLQRRIRARMRKLGISDYMEYYKILKSNKEE 60
Query: 61 FEELLFTIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYS 120
FEELL TIAINVTEFFRDP+VWKTFQ K+LPEL+ +KKSKG RS+KIWSAACSTGQEPYS
Sbjct: 61 FEELLLTIAINVTEFFRDPIVWKTFQNKILPELVQFKKSKGFRSIKIWSAACSTGQEPYS 120
Query: 121 IAMSLYEVLGDNLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRIS 180
IAM+LYEVLG+NL GFRVSILATDIDKEALQIAM+GEYP DAVEKQVPRHMI KYFDRIS
Sbjct: 121 IAMTLYEVLGENLGGFRVSILATDIDKEALQIAMRGEYPVDAVEKQVPRHMIYKYFDRIS 180
Query: 181 DERYRVKPKLKRLVTFRWFNLLSSVYPKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLED 240
+ERYR+KP +KRLVTFRWFNLLSS+YPKGFDVIFIRNVLIYMSKEAQE+IFRKLYDSLED
Sbjct: 181 EERYRIKPHVKRLVTFRWFNLLSSIYPKGFDVIFIRNVLIYMSKEAQEDIFRKLYDSLED 240
Query: 241 HGYLILGKTETILGKSANLFKLYDLVAKVYKKNLEVK 277
HGYLILGKTETILG+SANLFKLYDLVAKVYKKNL VK
Sbjct: 241 HGYLILGKTETILGRSANLFKLYDLVAKVYKKNLGVK 277
>gi|11498642 chemotaxis protein methyltransferase (cheR) [Archaeoglobus
fulgidus] >gi|7433526|pir||E69379 chemotaxis protein
methyltransferase (cheR) homolog - Archaeoglobus
fulgidus >gi|2649553|gb|AAB90203.1| (AE001031)
chemotaxis protein methyltransferase (cheR)
[Archaeoglobus fulgidus]
Length = 270
Score = 200 bits (504), Expect = 1e-50
Identities = 110/261 (42%), Positives = 170/261 (64%), Gaps = 8/261 (3%)
Query: 14 IFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQN-REEFEELLFTIAINV 72
+ K G+ N++ Y++SYL+RRI RM+ LG+ D+ EY +LLK N +EE E+L+ TI INV
Sbjct: 12 VSKESGI-NLHQYRESYLRRRIELRMKMLGVKDFGEYLRLLKSNGKEEVEKLINTITINV 70
Query: 73 TEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDN 132
TEF RD ++ ++VLPE+ K SR ++ WSA CS G+EPYSIA+S+ E LG+
Sbjct: 71 TEFMRDKTPFEFLMKEVLPEIAAKKSRVNSRVVRAWSAGCSCGEEPYSIAISILETLGE- 129
Query: 133 LSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRVKPKLKR 192
G+ +SI ATDID L++A +G Y + K + + +I KYFD+ D+ YRVK LK+
Sbjct: 130 --GWLISIYATDIDDACLEMAREGFYKPTQL-KNLSKALIAKYFDK-EDDGYRVKSFLKK 185
Query: 193 LVTFRWFNLLSSVYPKGF-DVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKTET 251
+V F+ +L + F D++F RNV+IY S++ + ++ Y++L D GYL++G++ET
Sbjct: 186 IVRFKKHDLTTEEPISRFLDIVFCRNVMIYFSEQQKAKVVNDFYNALVDGGYLVIGRSET 245
Query: 252 ILGKSANLFKLYDLVAKVYKK 272
+ + F+ +L KVY+K
Sbjct: 246 LPPGFKDRFECVNLREKVYRK 266
>sp|Q9WYT5|CHER_THEMA CHEMOTAXIS PROTEIN METHYLTRANSFERASE >gi|7433532|pir||H72373
chemotactic methyltransferase - Thermotoga maritima
(strain MSB8) >gi|4980972|gb|AAD35548.1|AE001724_6
(AE001724) chemotactic methyltransferase [Thermotoga
maritima]
Length = 282
Score = 175 bits (438), Expect = 7e-43
Identities = 96/257 (37%), Positives = 156/257 (60%), Gaps = 12/257 (4%)
Query: 7 YELIKAEIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLF 66
+E E+ KR G+ N+++YK ++RR +RK + Y EY +L ++++ +E +
Sbjct: 29 FEWFVKEVEKRFGL-NLSSYKPQRVKRRTELLLRKYNVG-YREYLNMLIKDKKYLDEFMD 86
Query: 67 TIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLY 126
+ INVTEFFR+P W + +++P + +K S +K WSA CS+G+EPYS+A+ ++
Sbjct: 87 KMTINVTEFFRNPEKWWELRDEIIPLI-----AKNSLRMKFWSAGCSSGEEPYSLAILVH 141
Query: 127 EVLGDNLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRV 186
E+ NLS ++ ILATDID L+ A +G Y A P+ + KYF+++ D RYR+
Sbjct: 142 EL---NLS-YKTRILATDIDIGVLRRAQEGIYEERAFVS-TPKEYLEKYFEKLPDGRYRI 196
Query: 187 KPKLKRLVTFRWFNLLSSVYPKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLIL 246
K +K++V F+ +LL + K FD+I RNV+IY EA+ E++RK +SL+ G+L +
Sbjct: 197 KDSVKKIVEFKRHDLLKDPFEKNFDLIVCRNVVIYFEPEAKNELYRKFAESLKPGGFLFV 256
Query: 247 GKTETILGKSANLFKLY 263
G TE I F++Y
Sbjct: 257 GNTERIFNYKELGFEIY 273
>sp|P31105|CHER_BACSU CHEMOTAXIS PROTEIN METHYLTRANSFERASE >gi|7433524|pir||A69599
chemotactic methyltransferase cheRB (EC 2.1.1.-) -
Bacillus subtilis >gi|143805|gb|AAA20858.1| (M80245)
CheR [Bacillus subtilis] >gi|2634690|emb|CAB14188.1|
(Z99115) methyl-accepting chemotaxis proteins (MCPs)
methyltransferase [Bacillus subtilis]
Length = 258
Score = 163 bits (408), Expect = 2e-39
Identities = 92/234 (39%), Positives = 148/234 (62%), Gaps = 12/234 (5%)
Query: 19 GVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLFTIAINVTEFFRD 78
GVD + YK++ ++RR+ + K G + ++ L++++ E L + INV+EF+R+
Sbjct: 16 GVD-LTLYKEAQMKRRLTSLYEKKGFQSFKDFAAALEKDQALLNETLDRMTINVSEFYRN 74
Query: 79 PVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDNLSGFRV 138
W+ + +LP + K SR LKIWSAACSTG+EPY++AM L + G L G++
Sbjct: 75 YKRWEVLETAILPLI------KTSRPLKIWSAACSTGEEPYTLAMLLDQQKG--LPGYQ- 125
Query: 139 SILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRVKPKLKRLVTFRW 198
ILATDID++AL+ A KG Y +++ +VP M +YF + ++ Y VK ++K+ +TF+
Sbjct: 126 -ILATDIDEKALEKAKKGVYQERSLQ-EVPLSMKDRYFTQNANRSYEVKTEIKKNITFKK 183
Query: 199 FNLLSSVYPKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKTETI 252
NLL+ Y + FD+I RNV IY ++ A+EE++ K+ SL+ +G L +G TE I
Sbjct: 184 HNLLADRYEQDFDLIVCRNVFIYFTESAKEELYLKMAHSLKKNGVLFVGSTEQI 237
>pir||A49538 chemotactic methyltransferase cheRB (EC 2.1.1.-) - Bacillus
subtilis >gi|415937|emb|CAA52033.1| (X73681) chemotactic
methyltransferase [Bacillus subtilis]
Length = 256
Score = 160 bits (401), Expect = 2e-38
Identities = 91/234 (38%), Positives = 148/234 (62%), Gaps = 12/234 (5%)
Query: 19 GVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLFTIAINVTEFFRD 78
GVD + YK++ ++RR+ + K G + ++ L++++ E L + INV+EF+R+
Sbjct: 16 GVD-LTLYKEAQMKRRLTSLYEKKGFQSFKDFAAALEKDQALLNETLDRMTINVSEFYRN 74
Query: 79 PVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDNLSGFRV 138
W+ + +LP + K SR LKIWSAACSTG+EPY++AM L + G L G++
Sbjct: 75 YKRWEVLETAILPLI------KTSRPLKIWSAACSTGEEPYTLAMLLDQQKG--LPGYQ- 125
Query: 139 SILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRVKPKLKRLVTFRW 198
ILATDID++AL+ A KG Y +++ +VP + +YF + ++ Y VK ++K+ +TF+
Sbjct: 126 -ILATDIDEKALEKAKKGVYQERSLQ-EVPVCVKDRYFTQNANRSYEVKTEIKKNITFKK 183
Query: 199 FNLLSSVYPKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKTETI 252
NLL+ Y + FD+I RNV IY ++ A+EE++ K+ SL+ +G L +G TE I
Sbjct: 184 HNLLADRYEQDFDLIVCRNVFIYFTESAKEELYLKMAHSLKKNGVLFVGSTEQI 237
>sp|O51069|CHER_BORBU CHEMOTAXIS PROTEIN METHYLTRANSFERASE >gi|7433527|pir||H70104
chemotaxis protein methyltransferase (cheR-1) homolog -
Lyme disease spirochete >gi|2687931|gb|AAC66439.1|
(AE001118) chemotaxis protein methyltransferase (cheR-1)
[Borrelia burgdorferi]
Length = 283
Score = 155 bits (388), Expect = 5e-37
Identities = 87/264 (32%), Positives = 149/264 (55%), Gaps = 10/264 (3%)
Query: 14 IFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFE--ELLFTIAIN 71
++ G+ N++ K ++ R+ + ++ G ++ EY L+++ + EL+ I+ N
Sbjct: 26 VYNNFGI-NLSEKKKLLIESRLSSLLKVKGFKNFTEYINFLEKSTGNIQLIELIDKISTN 84
Query: 72 VTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGD 131
T FFR+ + K+LP+L + + ++IWSA CS+G+EPY+IAM L E +
Sbjct: 85 HTYFFRESKHFDFLNNKILPKLTEKILNSENSEIRIWSAGCSSGEEPYTIAMMLKEYMEH 144
Query: 132 NLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRVKPKLK 191
N F+V ILATDI L A +G YP D + +P+++ KY +++ D++++VK LK
Sbjct: 145 NRVNFKVKILATDISISVLNEAREGIYPEDRI-INLPKYLKIKYLNQLQDDKFQVKEILK 203
Query: 192 RLVTFRWFNLLSSVYP--KGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKT 249
++V F+ NL+ +P K FD+IF RNV+IY ++ + + K L+ YL++G +
Sbjct: 204 KMVYFKKLNLMDEKFPFSKKFDLIFCRNVMIYFDEKTRNNLANKFNSYLKKDSYLLIGHS 263
Query: 250 ETILGKSANLFKLYDLVAKVYKKN 273
ETI G L ++ YKKN
Sbjct: 264 ETIRGNK----NLEYIMPATYKKN 283
>pir||D71300 probable chemotaxis protein methyltransferase (cheR) - syphilis
spirochete >gi|3322929|gb|AAC65605.1| (AE001238)
chemotaxis protein methyltransferase (cheR) [Treponema
pallidum]
Length = 303
Score = 155 bits (387), Expect = 7e-37
Identities = 82/248 (33%), Positives = 140/248 (56%), Gaps = 6/248 (2%)
Query: 7 YELIKAEIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLF 66
+ K I++ G+ +A S L+ RIR+R+R+L + YY+ + + E LL
Sbjct: 32 FAAFKTLIYEHSGI-TFSALNRSVLESRIRSRLRELALPSACAYYQQVLASSAELSALLD 90
Query: 67 TIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLY 126
++ N+T FFR+ + +F V+PEL+ K+S G S+ +WSA CSTG+EPY+IAM L
Sbjct: 91 SVTTNLTRFFRNKAHFDSFSHYVIPELVKAKRSVGEHSITVWSAGCSTGEEPYTIAMLLK 150
Query: 127 EVLGDNLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRV 186
+ F ++A+D+ ++L +A +G YP V VP + YF R + E Y++
Sbjct: 151 RYAP---AAFSCQVIASDLSLKSLLVARQGYYPRARV-SGVPDEYLRAYF-RETQEGYQI 205
Query: 187 KPKLKRLVTFRWFNLLSSVYPKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLIL 246
++++V F + NL + DV+F RNVLIY + AQ+ + + +D++ H +L +
Sbjct: 206 NADIRKMVRFDYHNLKHRSMHRNVDVLFCRNVLIYFDETAQKAVIERFWDAMSAHSFLFI 265
Query: 247 GKTETILG 254
G +E++ G
Sbjct: 266 GHSESLFG 273
>dbj|BAB05374.1| (AP001512) chemotaxis protein methyltransferase [Bacillus
halodurans]
Length = 257
Score = 151 bits (378), Expect = 8e-36
Identities = 91/250 (36%), Positives = 141/250 (56%), Gaps = 12/250 (4%)
Query: 7 YELIKAEIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLF 66
Y ++ +R G+D +N YK++ ++RR+ A K D+ Y+ + + E L
Sbjct: 5 YNWFIEQVKERTGID-LNLYKETQMKRRLIALREKRNYQDFRSYFTAMTNDDTLQNEFLE 63
Query: 67 TIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLY 126
+ INV+EFFR+ W ++P+L+ KK LK+WSAACSTG+EPY++AM
Sbjct: 64 RMTINVSEFFRNRKRWDVLDETIIPQLLKEKKR-----LKVWSAACSTGEEPYTLAM--- 115
Query: 127 EVLGDNLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRV 186
+L +L VSILATDID+ LQ A G Y ++ K++P + +F + Y V
Sbjct: 116 -ILQKHLPLKDVSILATDIDRAILQQAKVGYYTERSL-KEIPVELKEGFFTK-DRAGYYV 172
Query: 187 KPKLKRLVTFRWFNLLSSVYPKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLIL 246
+LK+ VTF+ NLL+ + + D+I RNVLIY ++EA+ E++ K ++L G L +
Sbjct: 173 SNELKQAVTFKQHNLLADRFERDCDLIVCRNVLIYFTEEAKRELYHKFSEALRPGGVLFV 232
Query: 247 GKTETILGKS 256
G TE I S
Sbjct: 233 GSTEQIFEAS 242
>gb|AAG19389.1| (AE005033) chemotaxis protein; CheR [Halobacterium sp. NRC-1]
Length = 234
Score = 145 bits (362), Expect = 6e-34
Identities = 95/239 (39%), Positives = 137/239 (56%), Gaps = 14/239 (5%)
Query: 39 MRKLGISDYMEYYKLLKQNRE-EFEELLFTIAINVTEFFRDPVVWKTFQRKVLPELINYK 97
MR+ G+ +Y Y LL+++ + E ELL T+++NVTEFFRD VW T R VL EL +
Sbjct: 1 MRRRGVEEYAGYLTLLEEDDDDERAELLDTLSVNVTEFFRDEKVW-TALRDVLLELADTV 59
Query: 98 KSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDNLSGFRVSILATDIDKEALQIAMKGE 157
RS+ IWSAAC+ G+EPYS+AM L L VSILATDID++AL A G
Sbjct: 60 -----RSIDIWSAACADGREPYSLAML---ALDAGLDPRNVSILATDIDEDALARARAGR 111
Query: 158 YP----ADAVEKQVPRHMIPKYFDRISDERYRVKPKLKRLVTFRWFNLLSSVYPKGFDVI 213
Y AD ++ +Y DR D + V ++K LVTF +L++ GFD++
Sbjct: 112 YESTRTADISDQLGFLDNPQEYVDREGDRAFVVNDRVKDLVTFERHDLITGDPKSGFDLV 171
Query: 214 FIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKTETILGKSANLFKLYDLVAKVYKK 272
RNV IY+ K+ + I + SL + G+L+LG+TET+ G+ F+ D ++Y +
Sbjct: 172 ACRNVCIYIDKQYKLPILDTVSKSLREGGHLVLGQTETLPGEVKERFEAEDPRIRIYSR 230
>gb|AAD41658.1| (AF074971) methyl transferase [Listeria monocytogenes]
Length = 262
Score = 145 bits (361), Expect = 8e-34
Identities = 82/236 (34%), Positives = 139/236 (58%), Gaps = 11/236 (4%)
Query: 18 LGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLFTIAINVTEFFR 77
LG+D + YK++ ++RRI + + K + E++K LK++ +E + I INV+ FFR
Sbjct: 20 LGLD-LALYKETQMKRRILSFIVKKKYITFGEFFKHLKKDAVLLDEFISLITINVSSFFR 78
Query: 78 DPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDNLSGFR 137
+ W +++VLP L+ + K L++WSAACS+G+EPYS+AM + +G
Sbjct: 79 NRNRWDALEKQVLPRLLEDSRGK----LRVWSAACSSGEEPYSLAMMMERSVGTR----H 130
Query: 138 VSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRVKPKLKRLVTFR 197
ILATD++ L+ A+ GEY + +E+ + + ++ + Y++ PK ++ + FR
Sbjct: 131 YDILATDLEPAILKRAVIGEYQSRQMEELSEQERHTAFVEK--GDTYQILPKYRKSIRFR 188
Query: 198 WFNLLSSVYPKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKTETIL 253
+LL+ Y KGFD+I RNVLIY + E + + ++K +SL G L +G +E IL
Sbjct: 189 RHDLLTDYYEKGFDLIVCRNVLIYFTAEGKHQAYQKFAESLRRGGVLFIGGSEQIL 244
>pir||A83227 probable chemotaxis protein methyltransferase PA3348 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|3721578|dbj|BAA33556.1| (AB012768) CheR [Pseudomonas
aeruginosa] >gi|9949481|gb|AAG06736.1|AE004757_5
(AE004757) probable chemotaxis protein methyltransferase
[Pseudomonas aeruginosa]
Length = 274
Score = 144 bits (359), Expect = 1e-33
Identities = 88/250 (35%), Positives = 139/250 (55%), Gaps = 8/250 (3%)
Query: 7 YELIKAEIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLF 66
+EL + + K G+ + + K + R+ M + GI E + ++ R E++
Sbjct: 8 FELFRVFLEKTCGIV-LGSNKQYLVSSRLNKLMEQQGIKSLGELVQRIQTQRGGLREMVV 66
Query: 67 -TIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSL 125
+ N T +FRD ++ +++VLPELI K+ G + L+IWSAACS+GQEPYS++M++
Sbjct: 67 DAMTTNETLWFRDTYPFEVLKQRVLPELI---KANGGQRLRIWSAACSSGQEPYSLSMAI 123
Query: 126 YEVLGDNLSGFR--VSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDER 183
E NL + V I+ATD+ L A GEY A+ + + + +YFD R
Sbjct: 124 DEFEKTNLGQLKAGVQIVATDLSGSMLTAAKAGEYDTLAMGRGLSPERLQRYFDAKGPGR 183
Query: 184 YRVKPKLKRLVTFRWFNLLSSVYPKG-FDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHG 242
+ VKP ++ V FR NLL S G FD++F RNVLIY S E + +I +++ +L+ G
Sbjct: 184 WAVKPAIRSRVEFRALNLLDSYASLGKFDMVFCRNVLIYFSAEVKRDILLRIHGTLKPGG 243
Query: 243 YLILGKTETI 252
YL LG +E +
Sbjct: 244 YLFLGASEAL 253
>gb|AAC25078.1| (AF044495) CheR homolog [Agrobacterium tumefaciens]
Length = 302
Score = 138 bits (345), Expect = 6e-32
Identities = 93/257 (36%), Positives = 143/257 (55%), Gaps = 11/257 (4%)
Query: 10 IKAEIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNR--EEFEELLFT 67
I A I+ G+ +N K S + R+ +R LG+S + EY L+ + + E+L
Sbjct: 32 IAAMIYADAGI-YLNDTKASLVYSRLSKHIRNLGLSGFREYCALVSSSEGAQPRREMLSH 90
Query: 68 IAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYE 127
+ N T FFR+ ++ + +VLP LI KS G ++IWSAACS GQEPYSIA+++
Sbjct: 91 LTTNFTRFFRENHHFEHLRDEVLPGLIARAKSGGR--VRIWSAACSDGQEPYSIALTVLA 148
Query: 128 VLGDNLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISD---ERY 184
+ N + + ILATDID + L A G Y +A+E P M ++F + ++
Sbjct: 149 MF-PNAADYDFKILATDIDPKILAQARAGVYDDNALETVSPA-MRKQWFTEVDAGGRRKF 206
Query: 185 RVKPKLKRLVTFRWFNLLSSVYPKG-FDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGY 243
R+ K+KRL+TF NL++ KG FDVIF RNV+IY + Q I+ + L + G+
Sbjct: 207 RIDDKVKRLITFNELNLMTQWPFKGNFDVIFCRNVVIYFDEPTQVRIWSRFAGLLPEGGH 266
Query: 244 LILGKTETILGKSANLF 260
L +G +E + G + N+F
Sbjct: 267 LYIGHSERVSGDAKNVF 283
>pir||S61836 cheR protein - Rhizobium meliloti >gi|534839|gb|AAA86676.1|
(U13166) CheR [Sinorhizobium meliloti]
Length = 302
Score = 134 bits (334), Expect = 1e-30
Identities = 90/257 (35%), Positives = 143/257 (55%), Gaps = 11/257 (4%)
Query: 10 IKAEIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQ--NREEFEELLFT 67
I A I+ G+ +N K S + R+ +R LG+ + +Y +L+ ++L
Sbjct: 32 IAAMIYADAGI-YLNESKASLVYSRLSKHIRNLGLKGFRDYCQLVASPAGAAARRDMLSH 90
Query: 68 IAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYE 127
+ N T FFR+ ++ + VLP LI K+ G ++IWSAACS GQEPYSIA+++
Sbjct: 91 LTTNFTRFFRENHHFEHLKTDVLPGLIARAKNGGR--VRIWSAACSDGQEPYSIALTVLS 148
Query: 128 VLGDNLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISD---ERY 184
+L N + + ILATDID + L +A G Y A A+E P M ++F + ++
Sbjct: 149 LL-PNAADYDFRILATDIDPKILALARAGAYDATALETVNPA-MRKQWFSEVEAGGRRKW 206
Query: 185 RVKPKLKRLVTFRWFNLLSSVYPKG-FDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGY 243
+V ++KRL+TF NL++ KG FDVIF RNV+IY + Q +I+ + L++ G+
Sbjct: 207 QVDDRVKRLITFNELNLMAQWPIKGPFDVIFCRNVVIYFDEPTQMKIWSRFAGVLDNGGH 266
Query: 244 LILGKTETILGKSANLF 260
L +G +E + G + LF
Sbjct: 267 LYIGHSERVSGDAKALF 283
>gb|AAA98755.1| (L29642) methyltransferase [Pseudomonas fluorescens]
Length = 492
Score = 133 bits (332), Expect = 2e-30
Identities = 84/250 (33%), Positives = 134/250 (53%), Gaps = 11/250 (4%)
Query: 26 YKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLFTIAINVTEFFRDPVVWKTF 85
YK + + RRI ++ D Y+ L+ + EE + LL + I VT FFRD ++
Sbjct: 14 YKRATVLRRIERPLQVTAQPDLAAYHDYLQMHPEETKALLGDMLIGVTNFFRDREAFEAL 73
Query: 86 QRKVLPELI-NYKKSKGSRS-LKIWSAACSTGQEPYSIAMSLYEVLGDNLSGFRVSILAT 143
+R V+P L+ + + S+ R ++IWSA CSTG+E YS+A+ E + ++ + AT
Sbjct: 74 ERNVIPALVKSLQDSQPHREDVRIWSAGCSTGEEAYSLAIVASEQMALEACNAKLQVFAT 133
Query: 144 DIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRVKPKLKRLVTFRWFNLLS 203
DID A+ KG YP +A+ VP + +YF R ++ YRV+ +++ V F +LL+
Sbjct: 134 DIDDRAIAQGRKGVYP-EAIVTDVPPQRMRQYFSR-ENQHYRVRKEIREKVLFAKHSLLA 191
Query: 204 SVYPKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKTETILGKSANLFKLY 263
D+I RN+LIY+ ++ Q EI + + +L GYL LG +E+ G
Sbjct: 192 DPPFSQIDLIVCRNLLIYLDRDVQREILQMFHFALRPGGYLFLGSSESADG-------CQ 244
Query: 264 DLVAKVYKKN 273
DL V K+N
Sbjct: 245 DLFVPVDKRN 254
>pir||E70151 chemotaxis protein methyltransferase (cheR-2) homolog - Lyme
disease spirochete >gi|2688317|gb|AAC66784.1| (AE001146)
chemotaxis protein methyltransferase (cheR-2) [Borrelia
burgdorferi]
Length = 285
Score = 129 bits (320), Expect = 5e-29
Identities = 73/242 (30%), Positives = 133/242 (54%), Gaps = 6/242 (2%)
Query: 31 LQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLFTIAINVTEFFRDPVVWKTFQRKVL 90
LQ R+ +R L + + + Y L+ + + E L + N+T FFR+ + ++TF++ V+
Sbjct: 32 LQSRVNDAVRALALENPSQLYNLIISEKLKKEYFLDLVTTNLTRFFRNSLHFQTFEKFVI 91
Query: 91 PELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDNLSGFRVSILATDIDKEAL 150
P LIN K + + IWSA CSTG+EPYS+A L L + I+A+D+ ++L
Sbjct: 92 PNLINIKNIEKKNRIIIWSAGCSTGEEPYSLAFVLKSKLPKEID---FVIIASDLSLKSL 148
Query: 151 QIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRVKPKLKRLVTFRWFNLLSSVYPKGF 210
IA +G Y ++ E +P+ +++ Y++K ++K + F + NL
Sbjct: 149 MIAKEGYYSSNKCE-NIPKEY--RHYIYSHSNGYKIKNEIKNHIRFDYHNLNFESNFSEI 205
Query: 211 DVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKTETILGKSANLFKLYDLVAKVY 270
DV+F RNVLIY ++++ ++ +K Y+++ + YL +G +E++ G + L A +Y
Sbjct: 206 DVVFCRNVLIYFDEKSKIKVLKKFYNNMSKNSYLFIGHSESLFGLNLPFKFLKTPWAIIY 265
Query: 271 KK 272
+K
Sbjct: 266 EK 267
>gb|AAB71333.1| (U64519) CheR [Rhodospirillum centenum (Rhodocista centenaria)]
Length = 277
Score = 126 bits (314), Expect = 3e-28
Identities = 77/227 (33%), Positives = 127/227 (55%), Gaps = 7/227 (3%)
Query: 31 LQRRIRARMRKLGISDYMEYYKLLKQNREE--FEELLFTIAINVTEFFRDPVVWKTFQRK 88
L+ R+ RK + E +++ ++E ++ + N + FFRD + F+
Sbjct: 29 LESRLMPIARKWSVKGLDELAAMIRTRKDEALLRDITEAMTTNESSFFRDQKPFDLFKSV 88
Query: 89 VLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDNLSGFRVSILATDIDKE 148
VLP + +++K +S++IWSAACS+GQE YS+ M+L + G ++G++ I+ TDI E
Sbjct: 89 VLPLQMPSRQAK--KSIRIWSAACSSGQEAYSLLMTLNDE-GHKVAGWKFDIVGTDISAE 145
Query: 149 ALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRVKPKLKRLVTFRWFNLLSSVYPK 208
+ A G Y V++ +P + KYF ++ D ++++ L+ V FR +NLLS + P
Sbjct: 146 MVAKAKAGLYTQFEVQRGLPITHLVKYFKQVGD-KWQISDDLRSRVQFREYNLLSDLSPL 204
Query: 209 G-FDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKTETILG 254
G FDVIF RNVLIY + + ++ + L G L LG ET+LG
Sbjct: 205 GQFDVIFCRNVLIYFDQPTKTKVLEAMARMLPPDGVLYLGGAETVLG 251
>gb|AAA23568.1| (M13463) cheR peptide [Escherichia coli]
Length = 286
Score = 125 bits (311), Expect = 6e-28
Identities = 85/251 (33%), Positives = 135/251 (52%), Gaps = 20/251 (7%)
Query: 7 YELIKAEIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNRE--EFEEL 64
+ I I++R G+ + +D R +R R+R LG++D+ Y LL+ N+ E++
Sbjct: 27 FRRISQLIYQRAGIVLADHKRDMVYNRLVR-RLRSLGLTDFGHYLNLLESNQHSGEWQAF 85
Query: 65 LFTIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMS 124
+ ++ N+T FFR+ P L ++ + +GS ++WSAA STG+EPYSIAM+
Sbjct: 86 INSLTTNLTAFFREA--------HHFPLLADHAR-RGSGEYRVWSAAASTGEEPYSIAMT 136
Query: 125 LYEVLGDNLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRIS---D 181
L + LG + R + A+DID E L+ A G Y + ++ P+ + +YF R + +
Sbjct: 137 LADTLG--TAPGRWKVFASDIDTEVLEKARSGIYRHEELKNLTPQ-QLQRYFMRGTGPHE 193
Query: 182 ERYRVKPKLKRLVTFRWFNLLSSVY--PKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLE 239
RV+ +L V F NLL+ Y P FD IF RNV+IY + Q+EI R+ L+
Sbjct: 194 GLVRVRQELANYVDFAPLNLLAKQYTVPGPFDAIFCRNVMIYFDQTTQQEILRRFVPLLK 253
Query: 240 DHGYLILGKTE 250
G L G +E
Sbjct: 254 PDGLLFAGHSE 264
>sp|P07364|CHER_ECOLI CHEMOTAXIS PROTEIN METHYLTRANSFERASE >gi|7427895|pir||XYECCR
protein-glutamate O-methyltransferase (EC 2.1.1.80) -
Escherichia coli >gi|1736537|dbj|BAA15700.1| (D90830)
Chemotaxis protein methyltransferase (EC 2.1.1.80).
[Escherichia coli] >gi|1788193|gb|AAC74954.1| (AE000282)
response regulator for chemotaxis; protein glutamate
methyltransferase [Escherichia coli K12]
Length = 286
Score = 122 bits (304), Expect = 4e-27
Identities = 84/251 (33%), Positives = 134/251 (52%), Gaps = 20/251 (7%)
Query: 7 YELIKAEIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNRE--EFEEL 64
+ I I++R G+ + +D R +R R+R LG++D+ Y LL+ N+ E++
Sbjct: 27 FRRISQLIYQRAGIVLADHKRDMVYNRLVR-RLRSLGLTDFGHYLNLLESNQHSGEWQAF 85
Query: 65 LFTIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMS 124
+ ++ N+T FFR+ P L ++ + + S ++WSAA STG+EPYSIAM+
Sbjct: 86 INSLTTNLTAFFREA--------HHFPLLADHARRR-SGEYRVWSAAASTGEEPYSIAMT 136
Query: 125 LYEVLGDNLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRIS---D 181
L + LG + R + A+DID E L+ A G Y + ++ P+ + +YF R + +
Sbjct: 137 LADTLG--TAPGRWKVFASDIDTEVLEKARSGIYRHEELKNLTPQ-QLQRYFMRGTGPHE 193
Query: 182 ERYRVKPKLKRLVTFRWFNLLSSVY--PKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLE 239
RV+ +L V F NLL+ Y P FD IF RNV+IY + Q+EI R+ L+
Sbjct: 194 GLVRVRQELANYVDFAPLNLLAKQYTVPGPFDAIFCRNVMIYFDQTTQQEILRRFVPLLK 253
Query: 240 DHGYLILGKTE 250
G L G +E
Sbjct: 254 PDGLLFAGHSE 264
>sp|Q02998|YH19_RHOCA HYPOTHETICAL 104.1 KD PROTEIN IN HYPE 3'REGION (ORF19)
>gi|479253|pir||S32954 hypothetical protein 19 -
Rhodobacter capsulatus >gi|46091|emb|CAA78796.1|
(Z15088) Orf 19 [Rhodobacter capsulatus]
Length = 952
Score = 122 bits (303), Expect = 5e-27
Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 4/241 (1%)
Query: 13 EIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLFTIAINV 72
EI G N YK +QRRI RM + D Y +LL +R E L + I V
Sbjct: 185 EILSLSGEVNFLDYKPGTVQRRIERRMGVRQVPDLTSYLELLTHDRTELASLRREMLIPV 244
Query: 73 TEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDN 132
T FFRDP + KV+ L+ + + GS +L++W+A C+TG+E Y++AM ++
Sbjct: 245 TSFFRDPDSFAELAEKVIDPLVA-QAAVGS-TLRVWTAGCATGEEAYTLAMLFFDAFERA 302
Query: 133 LSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRVKPKLKR 192
+ I ATD++ ++ A G + A+ + +P + ++F + Y ++P++++
Sbjct: 303 GRWPTLKIFATDVEPMNIETAAAGFF-AETIAADLPTTFLERFFTTRGGQ-YTIRPEIRQ 360
Query: 193 LVTFRWFNLLSSVYPKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKTETI 252
+ F NLLS D++ RN LIY EAQE R+++ ++ GYL LG +E +
Sbjct: 361 TIVFARHNLLSDPPFTRMDLVTCRNTLIYFRPEAQERALRRMHYAVRTGGYLFLGGSEAL 420
Query: 253 L 253
+
Sbjct: 421 V 421
>gb|AAD42911.1|U12817_5 (U12817) chemotaxis methyltransferase [Vibrio parahaemolyticus]
Length = 275
Score = 119 bits (296), Expect = 3e-26
Identities = 79/202 (39%), Positives = 110/202 (54%), Gaps = 9/202 (4%)
Query: 56 QNREEFEELLFTIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTG 115
+NRE + + N T +FRD + K+LPE+ K R +KIWSAA S+G
Sbjct: 61 RNRELRIAAVDAMTTNETLWFRDTYPFTVLADKLLPEVAANK-----RPIKIWSAASSSG 115
Query: 116 QEPYSIAMSLYEVLGDNLSGF--RVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIP 173
QEPYSIAM++ E G VSI ATDI L++ G Y A+ + +
Sbjct: 116 QEPYSIAMTILETQ-QRKPGLLPSVSITATDISASMLEMCRAGVYDNLALGRGLSPERRR 174
Query: 174 KYFDRISDERYRVKPKLKRLVTFRWFNLLSSVYPKG-FDVIFIRNVLIYMSKEAQEEIFR 232
+F+ D R +VK +KRLV FR NL+ S G FD+IF RNVLIY S E + ++
Sbjct: 175 TFFEDAGDGRMKVKDNVKRLVNFRPQNLMDSYALMGKFDIIFCRNVLIYFSPEMKSKVLN 234
Query: 233 KLYDSLEDHGYLILGKTETILG 254
++ SL GYL+LG +E++ G
Sbjct: 235 QMASSLNPGGYLLLGASESLTG 256
>sp|P07801|CHER_SALTY CHEMOTAXIS PROTEIN METHYLTRANSFERASE >gi|279477|pir||XYEBGM
protein-glutamate O-methyltransferase (EC 2.1.1.80) -
Salmonella typhimurium >gi|153903|gb|AAA27035.1|
(J02757) methyltransferase (cheR; EC 2.1.1.24)
[Salmonella typhimurium]
Length = 288
Score = 118 bits (294), Expect = 6e-26
Identities = 85/259 (32%), Positives = 132/259 (50%), Gaps = 24/259 (9%)
Query: 14 IFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLK--QNREEFEELLFTIAIN 71
I++R G+ + +D R +R R+R LG+ D+ Y +L+ QN E++ + + N
Sbjct: 34 IYQRAGIVLADHKRDMVYNRLVR-RLRALGLDDFGRYLSMLEANQNSAEWQAFINALTTN 92
Query: 72 VTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGD 131
+T FFR+ P L + + + ++WSAA STG+EPYSIA++L + LG
Sbjct: 93 LTAFFREA--------HHFPILAEHARRRHGE-YRVWSAAASTGEEPYSIAITLADALG- 142
Query: 132 NLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDER---YRVKP 188
++ R + A+DID E L+ A G Y ++ P+ + +YF R + RV+
Sbjct: 143 -MAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQL-QRYFMRGTGPHEGLVRVRQ 200
Query: 189 KLKRLVTFRWFNLLSSVY--PKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLIL 246
+L V F NLL Y P FD IF RNV+IY K QE+I R+ L+ G L
Sbjct: 201 ELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 260
Query: 247 GKTETILGKSANLFKLYDL 265
G +E +NL + + L
Sbjct: 261 GHSENF----SNLVREFSL 275
>pdb|1AF7| Cher From Salmonella Typhimurium
Length = 274
Score = 118 bits (294), Expect = 6e-26
Identities = 85/259 (32%), Positives = 132/259 (50%), Gaps = 24/259 (9%)
Query: 14 IFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLK--QNREEFEELLFTIAIN 71
I++R G+ + +D R +R R+R LG+ D+ Y +L+ QN E++ + + N
Sbjct: 24 IYQRAGIVLADHKRDMVYNRLVR-RLRALGLDDFGRYLSMLEANQNSAEWQAFINALTTN 82
Query: 72 VTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGD 131
+T FFR+ P L + + + ++WSAA STG+EPYSIA++L + LG
Sbjct: 83 LTAFFREA--------HHFPILAEHARRRHGE-YRVWSAAASTGEEPYSIAITLADALG- 132
Query: 132 NLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDER---YRVKP 188
++ R + A+DID E L+ A G Y ++ P+ + +YF R + RV+
Sbjct: 133 -MAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQL-QRYFMRGTGPHEGLVRVRQ 190
Query: 189 KLKRLVTFRWFNLLSSVY--PKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLIL 246
+L V F NLL Y P FD IF RNV+IY K QE+I R+ L+ G L
Sbjct: 191 ELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250
Query: 247 GKTETILGKSANLFKLYDL 265
G +E +NL + + L
Sbjct: 251 GHSENF----SNLVREFSL 265
>pdb|1BC5|A Chain A, Chemotaxis Receptor Recognition By Protein
Methyltransferase Cher
Length = 269
Score = 118 bits (294), Expect = 6e-26
Identities = 85/259 (32%), Positives = 132/259 (50%), Gaps = 24/259 (9%)
Query: 14 IFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLK--QNREEFEELLFTIAIN 71
I++R G+ + +D R +R R+R LG+ D+ Y +L+ QN E++ + + N
Sbjct: 19 IYQRAGIVLADHKRDMVYNRLVR-RLRALGLDDFGRYLSMLEANQNSAEWQAFINALTTN 77
Query: 72 VTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGD 131
+T FFR+ P L + + + ++WSAA STG+EPYSIA++L + LG
Sbjct: 78 LTAFFREA--------HHFPILAEHARRRHGE-YRVWSAAASTGEEPYSIAITLADALG- 127
Query: 132 NLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDER---YRVKP 188
++ R + A+DID E L+ A G Y ++ P+ + +YF R + RV+
Sbjct: 128 -MAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQL-QRYFMRGTGPHEGLVRVRQ 185
Query: 189 KLKRLVTFRWFNLLSSVY--PKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLIL 246
+L V F NLL Y P FD IF RNV+IY K QE+I R+ L+ G L
Sbjct: 186 ELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 245
Query: 247 GKTETILGKSANLFKLYDL 265
G +E +NL + + L
Sbjct: 246 GHSENF----SNLVREFSL 260
>dbj|BAB15839.1| (AB040876) CheR [Enterobacter cloacae]
Length = 290
Score = 118 bits (292), Expect = 1e-25
Identities = 81/246 (32%), Positives = 128/246 (51%), Gaps = 22/246 (8%)
Query: 14 IFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLK----QNREEFEELLFTIA 69
I++R G+ + +D R +R R+R LG+ D+ Y +L+ QN E++ + ++
Sbjct: 34 IYQRAGIVLADHKRDMVYNRLVR-RLRTLGLDDFGRYLSMLESGANQNSAEWQAFINSLT 92
Query: 70 INVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVL 129
N+T FFR+ P L + + + + ++WSAA STG+EPYS+A++L + L
Sbjct: 93 TNLTAFFREA--------HHFPVLAEHARRR-TGEYRVWSAAASTGEEPYSLAITLADTL 143
Query: 130 GDNLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDER---YRV 186
G ++ R + A+DID E L+ A G Y D ++ P+ + +YF R + RV
Sbjct: 144 G--MTPGRWKVYASDIDTEVLEKASNGVYRQDELKNLSPQQL-QRYFMRGTGPHEGLVRV 200
Query: 187 KPKLKRLVTFRWFNLLSSVY--PKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYL 244
+L V F NLL Y P FD IF RNV+IY K Q++I R+ L+ G L
Sbjct: 201 PQELANCVEFAPVNLLDKQYNVPGPFDAIFCRNVMIYFDKTTQQDILRRFVPLLKPDGLL 260
Query: 245 ILGKTE 250
G +E
Sbjct: 261 FAGHSE 266
>pir||S61498 chemotactic methyltransferase homolog pilK - Pseudomonas aeruginosa
>gi|11350601|pir||D83594 methyltransferase PilK PA0412
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|520529|gb|AAA85790.1| (U11382) similar to product
encoded by chemotactic methyltransferase gene: GenBank
Accession Number X73681 [Pseudomonas aeruginosa]
>gi|9946267|gb|AAG03801.1|AE004478_6 (AE004478)
methyltransferase PilK [Pseudomonas aeruginosa]
Length = 291
Score = 117 bits (290), Expect = 2e-25
Identities = 76/235 (32%), Positives = 118/235 (49%), Gaps = 9/235 (3%)
Query: 23 VNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNRE---EFEELLFTIAINVTEFFRDP 79
+N + ++LQ + ARMR+LGI DY YY+ + E+ LL + + T FFR P
Sbjct: 35 LNEQRRTFLQASLTARMRELGIGDYHSYYRQVTDGPRGAVEWATLLDRLTVQETRFFRHP 94
Query: 80 VVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDNLSGFRVS 139
++ +R + L ++ R +WS CS+G+EPYS+AM +VL
Sbjct: 95 PSFELLERYLGERL---RREGMPRPWALWSVGCSSGEEPYSLAMCAAQVLRGQEREDFFG 151
Query: 140 ILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRVKPKLKRLVTFRWF 199
+ TDI ALQ A + YPA +E Q+ ++ +Y +R +D + VK L V
Sbjct: 152 VTGTDISLHALQRARQANYPARKLE-QLEAGLVERYCERQADGSFSVKTILTERVCCARL 210
Query: 200 NLLSSVYP--KGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKTETI 252
N+L G DVIF +N+LIY + + EI +L + L G L++G E +
Sbjct: 211 NVLDLAKAPWSGMDVIFCQNLLIYFRRWRRREILNRLAERLAPGGLLVIGVGEVV 265
>emb|CAA07179.1| (AJ006687) CheR [Caulobacter crescentus]
Length = 293
Score = 116 bits (288), Expect = 3e-25
Identities = 86/272 (31%), Positives = 141/272 (51%), Gaps = 14/272 (5%)
Query: 7 YELIKAEIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNR--EEFEEL 64
++ I A ++ G+ ++ K + + R+ R+R LG+ + EY + ++ +E +E+
Sbjct: 27 FKRIAALLYDLAGISLPDS-KATLVYSRLAKRLRALGLRSFNEYCSFVASDKGHDESQEM 85
Query: 65 LFTIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMS 124
L + NVT FFR+P + + VL + + ++ G L++WSAA S+GQEPYS+A +
Sbjct: 86 LRALTTNVTRFFREPHHFDDLRANVLEPVADKVRAGGR--LRLWSAASSSGQEPYSMAFT 143
Query: 125 LYEVLGDNLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDER- 183
+ V N + + IL TDID L Y +E +P +YF+R + +R
Sbjct: 144 VLSV-WPNAADLDIRILGTDIDTNVLATGRAAVYDESLLE-GIPTAARGQYFERDTSDRR 201
Query: 184 -YRVKPKLKRLVTFRWFNLLSSVYP-KG-FDVIFIRNVLIYMSKEAQEEIFRKLYDSLED 240
+RV + LV FR NL +P KG FD IF RNV+IY + QE ++ + +
Sbjct: 202 GWRVCEAARSLVAFRELNLNGPSWPMKGPFDAIFCRNVVIYFDEPTQERVWNRFAPLVAP 261
Query: 241 HGYLILGKTETILGKSANLFKLYDLVAKVYKK 272
G L +G +E + G S F+ L A Y+K
Sbjct: 262 GGRLYVGHSERV-GTSVTAFESCGLTA--YRK 290
>pir||S47261 cheR protein - Rhodobacter sphaeroides >gi|7433525|pir||S70183
chemotaxis protein methyltransferase cheR - Rhodobacter
sphaeroides >gi|581531|emb|CAA56500.1| (X80205) CheR1
protein [Rhodobacter sphaeroides]
Length = 305
Score = 116 bits (287), Expect = 4e-25
Identities = 77/233 (33%), Positives = 131/233 (56%), Gaps = 14/233 (6%)
Query: 27 KDSYLQRRIRARMRKLGISDYMEYYKLLK--QNREEFEELLFTIAINVTEFFRDPVVWKT 84
K+ + R+ R+R+L ++ + Y L+ + R+E + ++ N T FFR+ ++
Sbjct: 41 KEPLVYARLAKRLRQLSLTSFTAYLDLISTPEGRDERSMFISSMTTNTTRFFREEHHFEL 100
Query: 85 FQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDNLSGFRVSILATD 144
+VLP L++ + G+R ++ WSA CS+G+EP+S+A++L E+ D + + ILATD
Sbjct: 101 LSERVLPPLLDAARH-GAR-VRFWSAGCSSGEEPFSMAITLLELCPD-AGHYDIKILATD 157
Query: 145 IDKEALQIAMKGEYPADAVEKQVPRHMIPKYF---DRISDERYRVKPKLKRLVTFRWFNL 201
ID++ L A G + A ++ +P ++ +F DR D R V L+ LVTF+ NL
Sbjct: 158 IDRKILGRAQAGWFAASSLAA-LPDAVLAHHFGPPDR--DGRREVSADLRALVTFKPLNL 214
Query: 202 LSSVYP--KGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKTETI 252
+ +P + FDVIF RNV IY + Q I+R +L G+L +G +E +
Sbjct: 215 VKP-WPVTRPFDVIFCRNVAIYFDPDTQNRIWRGFASTLAPGGHLFIGHSERL 266
>gb|AAD45254.1|AF139167_1 (AF139167) chemotaxis methyl transferase [Vibrio cholerae]
Length = 257
Score = 115 bits (286), Expect = 5e-25
Identities = 76/201 (37%), Positives = 109/201 (53%), Gaps = 7/201 (3%)
Query: 56 QNREEFEELLFTIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTG 115
+NR+ + + N T +FRD + K+LPE+ K R +KIWSAA S+G
Sbjct: 52 RNRDLRVAAVDAMTTNETLWFRDSYPFTVLADKLLPEMAANK-----RPIKIWSAASSSG 106
Query: 116 QEPYSIAMSLYEVLGDNLSGF-RVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPK 174
QEPYS+AM++ EV VSI ATDI L + G Y A+ + +
Sbjct: 107 QEPYSMAMTILEVQQKRPGLLPSVSITATDISASMLDMCRAGIYDNLALGRGLSPERRRV 166
Query: 175 YFDRISDERYRVKPKLKRLVTFRWFNLLSSVYPKG-FDVIFIRNVLIYMSKEAQEEIFRK 233
+F+ D R +VK +KRLV FR NL+ S G FD+IF RNVLIY S + + ++ +
Sbjct: 167 FFEDAGDGRMKVKDNVKRLVNFRPQNLMESYSLLGKFDIIFCRNVLIYFSPDMKSKVLNQ 226
Query: 234 LYDSLEDHGYLILGKTETILG 254
+ SL GYL+LG +E++ G
Sbjct: 227 MAASLNPGGYLLLGASESLTG 247
>pir||H82106 chemotaxis protein methyltransferase CheR VC2201 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656757|gb|AAF95346.1| (AE004291) chemotaxis protein
methyltransferase CheR [Vibrio cholerae]
Length = 275
Score = 115 bits (286), Expect = 5e-25
Identities = 76/201 (37%), Positives = 109/201 (53%), Gaps = 7/201 (3%)
Query: 56 QNREEFEELLFTIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTG 115
+NR+ + + N T +FRD + K+LPE+ K R +KIWSAA S+G
Sbjct: 61 RNRDLRVAAVDAMTTNETLWFRDSYPFTVLADKLLPEMAANK-----RPIKIWSAASSSG 115
Query: 116 QEPYSIAMSLYEVLGDNLSGF-RVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPK 174
QEPYS+AM++ EV VSI ATDI L + G Y A+ + +
Sbjct: 116 QEPYSMAMTILEVQQKRPGLLPSVSITATDISASMLDMCRAGIYDNLALGRGLSPERRRV 175
Query: 175 YFDRISDERYRVKPKLKRLVTFRWFNLLSSVYPKG-FDVIFIRNVLIYMSKEAQEEIFRK 233
+F+ D R +VK +KRLV FR NL+ S G FD+IF RNVLIY S + + ++ +
Sbjct: 176 FFEDAGDGRMKVKDNVKRLVNFRPQNLMESYSLLGKFDIIFCRNVLIYFSPDMKSKVLNQ 235
Query: 234 LYDSLEDHGYLILGKTETILG 254
+ SL GYL+LG +E++ G
Sbjct: 236 MAASLNPGGYLLLGASESLTG 256
>pir||S70895 chemotactic methyltransferase - Vibrio anguillarum
>gi|1177141|gb|AAB38489.1| (U36378) chemotaxis methyl
transferase [Vibrio anguillarum]
>gi|1589243|prf||2210376A cheR gene [Vibrio anguillarum]
Length = 275
Score = 113 bits (280), Expect = 2e-24
Identities = 73/201 (36%), Positives = 108/201 (53%), Gaps = 7/201 (3%)
Query: 56 QNREEFEELLFTIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTG 115
+NRE + + N T +FRD + ++LPE+ K R +KIWSAA S+G
Sbjct: 61 RNRELRVAAVDAMTTNETLWFRDAYPFTVLAERLLPEVAANK-----RPIKIWSAASSSG 115
Query: 116 QEPYSIAMSLYEVLGDNLSGF-RVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPK 174
QEPYS+AM++ E V+I ATDI L + G Y A+ + +
Sbjct: 116 QEPYSMAMTVLETQQRKPGMLPSVAITATDISASMLDMCKAGIYDNLALGRGLSPERRKI 175
Query: 175 YFDRISDERYRVKPKLKRLVTFRWFNLLSSVYPKG-FDVIFIRNVLIYMSKEAQEEIFRK 233
+F+ D R ++K +KRLV FR NL+ S G FD+IF RNVLIY S + + ++ +
Sbjct: 176 FFEDAGDGRMKIKDNVKRLVNFRPQNLMESYALLGKFDIIFCRNVLIYFSPDMKSKVLNQ 235
Query: 234 LYDSLEDHGYLILGKTETILG 254
+ SL GYL+LG +E++ G
Sbjct: 236 MASSLNPGGYLLLGASESLTG 256
>pir||G82379 chemotaxis protein methyltransferase CheR VCA1091 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9658537|gb|AAF96983.1| (AE004434) chemotaxis protein
methyltransferase CheR [Vibrio cholerae]
Length = 276
Score = 111 bits (276), Expect = 7e-24
Identities = 68/238 (28%), Positives = 135/238 (56%), Gaps = 11/238 (4%)
Query: 27 KDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLFTIAINVTEFFRDPVVWKTFQ 86
K + + R+ +MR+ G+ + ++ +L++ + +E + T+ N TEFFR+ ++ +
Sbjct: 35 KRTMVYGRLSRQMRRKGLRRFTQFRELIESDEQERIHFINTLTTNKTEFFRESHHFEFIE 94
Query: 87 RKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDNLSGFRVSILATDID 146
+ ++PE + K + + L+ WSA CSTG+EPY++ +S+ + G + I ATD+D
Sbjct: 95 KVLVPE---WSKERVGQ-LRFWSAGCSTGEEPYTL-VSVLDHAGVMNFCPDIKIWATDLD 149
Query: 147 KEALQIAMKGEYPADAVEKQVPRHMIPKYFDR-ISDER--YRVKPKLKRLVTFRWFNLLS 203
L+ A G YP ++ + +P + + F R + D++ ++K L+R + F NL+
Sbjct: 150 TAVLEKASLGIYPIES-QSSIPERYLRRCFVRGVKDQQGNMKIKQSLQRYIDFHQLNLIQ 208
Query: 204 S-VYPKGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKTETILGKSANLF 260
+ + D+I RNV+IY + QE++ + + L+ G L+LG +E++ G+ ++LF
Sbjct: 209 EWPFKQKLDLILCRNVMIYFDRPTQEQLIERFHQQLKPGGVLMLGHSESV-GRCSSLF 265
>pir||H83623 probable chemotaxis protein methyltransferase PA0175 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9946008|gb|AAG03565.1|AE004455_6 (AE004455) probable
chemotaxis protein methyltransferase [Pseudomonas
aeruginosa]
Length = 280
Score = 111 bits (276), Expect = 7e-24
Identities = 84/259 (32%), Positives = 134/259 (51%), Gaps = 23/259 (8%)
Query: 7 YELIKAEIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLF 66
++ ++ +++ G+ + K + R+ R+R L + + EY+ L +RE E+ LF
Sbjct: 22 FQQVRERLYRLTGISLAES-KAQLVYSRLSRRLRLLRLGSFAEYFTHL--DREPGEQQLF 78
Query: 67 TIAI--NVTEFFRDPVVWKTFQRKVLPELINY--KKSKGSRSLKIWSAACSTGQEPYSIA 122
A+ N+T FFR+ R P L + ++ + R L+IWSAA STG+EPYSIA
Sbjct: 79 VNALTTNLTAFFRE--------RHHFPLLADLARRQLQRHRPLRIWSAAASTGEEPYSIA 130
Query: 123 MSLYEVLGDNLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDE 182
++L E LG V I+A+DID L A +G YP + +E Q+P + ++F R +
Sbjct: 131 ITLVEALGS--FDPPVKIVASDIDTGVLDCARQGVYPLERLE-QMPAPLKKRFFLRGTGP 187
Query: 183 ---RYRVKPKLKRLVTFRWFNLLSSVYPKG--FDVIFIRNVLIYMSKEAQEEIFRKLYDS 237
+ RV +L++LV FR NLL + + D IF RNV+IY K Q + ++
Sbjct: 188 NAGKARVVEELRQLVEFRQINLLEADWSIAGELDAIFCRNVMIYFDKPTQTRLLERMVAL 247
Query: 238 LEDHGYLILGKTETILGKS 256
L G G +E + S
Sbjct: 248 LRPEGLFFAGHSENFVHAS 266
>sp|P31759|FRZF_MYXXA PROTEIN METHYLTRANSFERASE FRZF >gi|279478|pir||XYYZFG frzG protein
- Myxococcus xanthus >gi|150094|gb|AAA25398.1| (M35200)
FrzF protein [Myxococcus xanthus]
Length = 593
Score = 106 bits (263), Expect = 2e-22
Identities = 73/240 (30%), Positives = 120/240 (49%), Gaps = 19/240 (7%)
Query: 31 LQRRIRARMRKLGISDYMEYYKLLKQ--NREEFEELLFTIAINVTEFFRDPVVWKTFQRK 88
L+ + ARM LG+ + Y + L EE LL + + TEFFRD ++ ++
Sbjct: 32 LRLALSARMPVLGLEEPEHYIQRLTGAGGEEELRSLLPLVTVGHTEFFRDAKQFRALEKS 91
Query: 89 VLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDNLSGFRVSILATDIDKE 148
VLP+L++ + + R + IWSA C+TG+EPYS+AM L E+ V + ATD++
Sbjct: 92 VLPDLVS-RSRREMRKVSIWSAGCATGEEPYSLAMVLAEL---GALSLEVDLWATDLNLA 147
Query: 149 ALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRVKPKLKRLVTFRWFNLLSSVYPK 208
A++ A +G + + + + + ++F + +E Y P L+ + F NL V+ K
Sbjct: 148 AVEAAKQGRFTSRRA-ISINQARLTRFFKPV-EEGYEALPALREYIRFDGQNLAVPVFDK 205
Query: 209 ----GFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKTETILGKSANLFKLYD 264
D+I RNV+IY + + +L G L LG +E +LFK+YD
Sbjct: 206 VALSSLDLILCRNVIIYFDLPTIRGLMDRFLAALRPGGLLFLGYSE-------SLFKVYD 258
>pir||T45020 chemotaxis protein methyltransferase cheRII [imported] -
Rhodobacter sphaeroides >gi|2293003|emb|CAA04432.1|
(AJ000977) methyltransferase [Rhodobacter sphaeroides]
Length = 278
Score = 100 bits (247), Expect = 2e-20
Identities = 78/251 (31%), Positives = 125/251 (49%), Gaps = 17/251 (6%)
Query: 14 IFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLFTIAI--- 70
I R G+ + ++ ++ R+R R+ +G + + Y + L + +EL I +
Sbjct: 17 IRSRTGIQ-LPVHRRQMIESRLRPRIAAVGATGFEGYLEQLFDHGLLDDELPLVIDLLTT 75
Query: 71 NVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLG 130
N T+F+R+ + K++PE I + R LKIWSAA S G E Y+ A+ L E
Sbjct: 76 NKTDFYRESAHFDVLVDKIVPETIRHATPHAPR-LKIWSAASSEGAEAYTAAIVLAEA-- 132
Query: 131 DNLSGFRVS--ILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERY---- 184
+G R S IL TDI L+ A + Y A+ + VP + +Y +
Sbjct: 133 -QRAGHRFSYAILGTDISHRMLERARRAIYTAEQLSP-VPAELRARYTMAGRAPSHAGTA 190
Query: 185 RVKPKLKRLVTFRWFNLLSSVYP--KGFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHG 242
R+ P+L+ V F NL+ S YP + DVIF+RNVLIY E Q + ++ L G
Sbjct: 191 RIVPELRDRVQFMHLNLMDSTYPVDRDVDVIFLRNVLIYFGPEDQAAVIARMAGHLRPGG 250
Query: 243 YLILGKTETIL 253
YL++G +E+++
Sbjct: 251 YLMVGHSESMV 261
>pir||G82205 chemotaxis protein methyltransferase CheR VC1399 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655894|gb|AAF94556.1| (AE004218) chemotaxis protein
methyltransferase CheR [Vibrio cholerae]
Length = 288
Score = 100 bits (247), Expect = 2e-20
Identities = 68/243 (27%), Positives = 125/243 (50%), Gaps = 11/243 (4%)
Query: 15 FKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLK--QNREEFEELLFTIAINV 72
+++ G+ N+ K ++ +R+ R+ + Y+ L+ + EE + ++ + +N
Sbjct: 19 YQKTGIFFENS-KRYFVDKRLLQRIELTEHQSFRGYFTYLRFQASGEELQAVINALTVNE 77
Query: 73 TEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDN 132
T FFR+ ++ +VL +++ ++ + ++IWS CS+G+EPYSI + L E
Sbjct: 78 TYFFREISQLESLVEEVLDDIVRHRPGE---LIRIWSMPCSSGEEPYSIVLFLLE-HWPK 133
Query: 133 LSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRVKPKLKR 192
L + I+A+DID LQ A +G + A +V K +P + KYF +D Y++ +++
Sbjct: 134 LEQVDIEIIASDIDTGILQKAAQGIFSARSV-KNLPNSSLNKYFSLRADGSYQLIDDIRQ 192
Query: 193 LVTFRWFNLLSSVYPK---GFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKT 249
V F NL + + DVIF RN+LIY ++ Y+ L G L LG +
Sbjct: 193 SVRFTQTNLNNRAEVQKLGAMDVIFCRNLLIYFDDISRRNAVESFYEQLNPGGVLFLGHS 252
Query: 250 ETI 252
E++
Sbjct: 253 ESM 255
>pir||A83184 probable protein methyltransferase PA3706 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949870|gb|AAG07093.1|AE004789_13 (AE004789)
probable protein methyltransferase [Pseudomonas
aeruginosa]
Length = 422
Score = 97.9 bits (240), Expect = 1e-19
Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 12/240 (5%)
Query: 17 RLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLFTIAINVTEFF 76
R+G+D ++ + ++R +R RM L + D EY+ L + E + L+ + + T FF
Sbjct: 12 RIGLD-ASSVGSAVIERAVRQRMSGLALHDEDEYWMRLNGSPGEVQALIEAVVVPETWFF 70
Query: 77 RDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDNLSGF 136
R P + T R L + G R+L+I S CSTG+EPYSI M+L L LS +
Sbjct: 71 RYPESFTTLARLAFERLPSLG---GGRALRILSLPCSTGEEPYSIVMAL---LDAGLSEY 124
Query: 137 RVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRVKPKLKRLVTF 196
+ A D+ ++ A G Y ++ ++F ++ E Y++ +++R V F
Sbjct: 125 LFEVDALDVSARVIERASLGVYGRNSFRGD-ELGFRDRHFSEVA-EGYQLAEQVRRKVRF 182
Query: 197 RWFNLLSSVYPKG---FDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKTETIL 253
R NLL G +D +F RN+LIY + Q E+ L L G + +G E L
Sbjct: 183 RCGNLLDPGLLAGEAPYDFVFCRNLLIYFDRPTQSEVVEVLKRLLRPDGAMFIGPAEASL 242
>dbj|BAA15705.1| (D90831) Chemotaxis protein methyltransferase (EC 2.1.1.80).
[Escherichia coli]
Length = 227
Score = 94.0 bits (230), Expect = 2e-18
Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 20/214 (9%)
Query: 7 YELIKAEIFKRLGVDNVNAYKDSYLQRRIRARMRKLGISDYMEYYKLLKQNRE--EFEEL 64
+ I I++R G+ + +D R +R R+R LG++D+ Y LL+ N+ E++
Sbjct: 27 FRRISQLIYQRAGIVLADHKRDMVYNRLVR-RLRSLGLTDFGHYLNLLESNQHSGEWQAF 85
Query: 65 LFTIAINVTEFFRDPVVWKTFQRKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMS 124
+ ++ N+T FFR+ P L ++ + + S ++WSAA STG+EPYSIAM+
Sbjct: 86 INSLTTNLTAFFREA--------HHFPLLADHARRR-SGEYRVWSAAASTGEEPYSIAMT 136
Query: 125 LYEVLGDNLSGFRVSILATDIDKEALQIAMKGEYPADAVEKQVPRHMIPKYFDRIS---D 181
L + LG + R + A+DID E L+ A G Y + ++ P+ + +YF R + +
Sbjct: 137 LADTLG--TAPGRWKVFASDIDTEVLEKARSGIYRHEELKNLTPQ-QLQRYFMRGTGPHE 193
Query: 182 ERYRVKPKLKRLVTFRWFNLLSSVY--PKGFDVI 213
RV+ +L V F NLL+ Y P FD I
Sbjct: 194 GLVRVRQELANYVDFAPLNLLAKQYTVPGPFDAI 227
>pir||B48518 PEB1 5'-region hypothetical protein B - Campylobacter jejuni
>gi|388563|gb|AAA02917.1| (L13662) putative
[Campylobacter jejuni]
Length = 264
Score = 69.9 bits (168), Expect = 3e-11
Identities = 63/251 (25%), Positives = 113/251 (44%), Gaps = 23/251 (9%)
Query: 27 KDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLFTIAINVTEFFRDPVVWKTFQ 86
K + L ++ + ++ E+ LK NR+ +E L + I T F R+ K
Sbjct: 30 KKNILALKLNKFLEGTNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLK--- 86
Query: 87 RKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDNLSGFRVSILATDID 146
E+I Y KS R + I SA CS+G+E YS+A+ + ++ IL DI+
Sbjct: 87 -----EIIYYAKSLEKR-VNILSAPCSSGEEVYSLALLAAQNFIKDMY-----ILGVDIN 135
Query: 147 KEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRVKPKLKRLVTFRWFNLLSSVY 206
++ A G+Y +++ + ++F D+ Y + F N+ +
Sbjct: 136 SSVIEKAKLGKYQGRTLQR-LSESEKRRFFLESEDKFYTINKNELCTCKFELCNVFEEKF 194
Query: 207 PK--GFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKT----ETILGKSANLF 260
+ FD+I RN++IY E++ ++ + + L D G L +G ETI K +L
Sbjct: 195 SRLGKFDIIASRNMIIYFDHESKLKLMERFHRILNDKGRLYVGNADLIPETIYFKKISLQ 254
Query: 261 KLYDLVAKVYK 271
+++ + K YK
Sbjct: 255 EVFTM--KKYK 263
>sp|P45676|CHER_CAMJE CHEMOTAXIS PROTEIN METHYLTRANSFERASE >gi|11256956|pir||B81366
probable protein-glutamate O-methyltransferase (EC
2.1.1.80) Cj0923c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6968360|emb|CAB73180.1|
(AL139076) putative MCP protein methyltransferase
[Campylobacter jejuni]
Length = 262
Score = 68.3 bits (164), Expect = 1e-10
Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 17/228 (7%)
Query: 27 KDSYLQRRIRARMRKLGISDYMEYYKLLKQNREEFEELLFTIAINVTEFFRDPVVWKTFQ 86
K + L ++ + ++ E+ LK NR+ +E L + I T F R+ K
Sbjct: 30 KKNILALKLNKFLEGTNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLK--- 86
Query: 87 RKVLPELINYKKSKGSRSLKIWSAACSTGQEPYSIAMSLYEVLGDNLSGFRVSILATDID 146
E+I Y KS R + I SA CS+G+E YS+A+ + ++ IL DI+
Sbjct: 87 -----EIIYYAKSLEKR-VNILSAPCSSGEEVYSLALLAAQNFIKDMY-----ILGVDIN 135
Query: 147 KEALQIAMKGEYPADAVEKQVPRHMIPKYFDRISDERYRVKPKLKRLVTFRWFNLLSSVY 206
++ A G+Y +++ + ++F D+ Y + F N+ +
Sbjct: 136 SSVIEKAKLGKYQGRTLQR-LSESEKRRFFLESEDKFYTINKNELCTCKFELCNVFEEKF 194
Query: 207 PK--GFDVIFIRNVLIYMSKEAQEEIFRKLYDSLEDHGYLILGKTETI 252
+ FD+I RN++IY E++ ++ + + L D G L +G + I
Sbjct: 195 SRLGKFDIIASRNMIIYFDHESKLKLMERFHRILNDKGRLYVGNADLI 242
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.139 0.398
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99354809
Number of Sequences: 2977
Number of extensions: 3941591
Number of successful extensions: 10178
Number of sequences better than 1.0e-10: 40
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 10058
Number of HSP's gapped (non-prelim): 42
length of query: 283
length of database: 189,106,746
effective HSP length: 56
effective length of query: 227
effective length of database: 155,591,474
effective search space: 35319264598
effective search space used: 35319264598
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)