BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1330 (cheY) DE:chemotaxis response regulator (cheY)
(120 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75002 chemotaxis response regulator (chey) PAB1330 - Pyroc... 231 2e-60
pir||E71160 probable chemotaxis protein (cheY) - Pyrococcus hori... 231 2e-60
sp|Q56312|CHEY_THEMA CHEMOTAXIS PROTEIN CHEY >gi|7443033|pir||B7... 175 2e-43
gi|11498647 chemotaxis response regulator (cheY) [Archaeoglobus ... 163 6e-40
dbj|BAB06163.1| (AP001515) two-component response regulator invo... 160 5e-39
sp|P24072|CHEY_BACSU CHEMOTAXIS PROTEIN CHEY HOMOLOG >gi|98251|p... 155 1e-37
dbj|BAB06687.1| (AP001517) two-component response regulator invo... 152 1e-36
gb|AAC27631.1| (AF076485) defective in fruiting DifD [Myxococcus... 141 2e-33
emb|CAA53764.1| (X76170) cheY [Listeria monocytogenes] 138 2e-32
sp|P45709|CCDB_BACSU CCDB PROTEIN >gi|1361404|pir||S57405 respon... 132 1e-30
gb|AAC33471.1| (AF074950) CheY [Treponema denticola] 123 6e-28
pir||S58645 response regulator cheY [validated] - Halobacterium ... 121 2e-27
sp|P96126|CHEY_TREPA CHEMOTAXIS PROTEIN CHEY >gi|7443016|pir||D7... 121 3e-27
pir||F75521 DNA-binding response regulator - Deinococcus radiodu... 111 2e-24
pir||G70183 chemotaxis response regulator (cheY-3) homolog - Lym... 106 1e-22
gb|AAB81651.1| (U61498) CheY [Borrelia burgdorferi] 104 3e-22
gi|11498646 protein-glutamate methylesterase (cheB) [Archaeoglob... 104 4e-22
gi|11499482 response regulator [Archaeoglobus fulgidus] >gi|7443... 101 2e-21
emb|CAB54571.1| (AJ006393) response regulator [Streptococcus pne... 98 3e-20
sp|Q9WYN9|CHEB_THEMA PROTEIN-GLUTAMATE METHYLESTERASE >gi|743506... 98 4e-20
pir||T35758 probable response regulator - Streptomyces coelicolo... 96 9e-20
pir||F70168 chemotaxis response regulator (cheY-1) homolog - Lym... 95 3e-19
pir||S75143 sensory transduction system regulatory protein slr17... 94 4e-19
gi|11499830 response regulator [Archaeoglobus fulgidus] >gi|7443... 94 4e-19
emb|CAB90919.1| (AL355774) putative DNA-binding response regulat... 94 4e-19
emb|CAB44989.1| (AJ131854) NarL protein [Pseudomonas stutzeri] 94 5e-19
gi|11498061 response regulator [Archaeoglobus fulgidus] >gi|7443... 93 8e-19
pir||H70558 hypothetical protein Rv1626 - Mycobacterium tubercul... 92 2e-18
pir||T36318 two-component response regulator - Streptomyces coel... 91 3e-18
pir||H75381 DNA-binding response regulator - Deinococcus radiodu... 90 5e-18
pir||F83265 probable two-component response regulator PA3045 [im... 90 7e-18
dbj|BAB03325.1| (AB035448) response regulator [Staphylococcus au... 90 7e-18
gi|11498980 response regulator [Archaeoglobus fulgidus] >gi|7443... 90 7e-18
pir||T36862 probable two-component response regulator - Streptom... 89 1e-17
gb|AAF32418.1| (AF069392) chemotaxis protein CheB [Vibrio paraha... 89 2e-17
dbj|BAB04770.1| (AP001510) two-component response regulator [Bac... 88 3e-17
pir||T36528 probable two-component system regulator - Streptomyc... 88 3e-17
dbj|BAB07561.1| (AP001520) two-component response regulator [Bac... 87 5e-17
dbj|BAB05299.1| (AP001512) two-component response regulator [Bac... 87 6e-17
sp|O87125|CHEB_PSEAE PROTEIN-GLUTAMATE METHYLESTERASE >gi|112626... 86 1e-16
gi|11467627 ompR homolog [Guillardia theta] >gi|6136611|sp|O7842... 85 2e-16
pir||D72374 response regulator - Thermotoga maritima (strain MSB... 85 2e-16
pir||H82122 protein-glutamate methylesterase CheB VC2062 [import... 85 2e-16
gb|AAC45136.1| (U63847) ORF1; homolog to response regulator of ... 85 2e-16
sp|P52929|SP0A_BACBR STAGE 0 SPORULATION PROTEIN A >gi|2119860|p... 85 2e-16
sp|Q48300|CHEB_HALSA PROTEIN-GLUTAMATE METHYLESTERASE >gi|136346... 85 2e-16
pir||E75002 protein-glutamate methylesterase (cheb) PAB1331 - Py... 85 2e-16
gb|AAG19394.1| (AE005033) chemotaxis protein; CheB [Halobacteriu... 85 2e-16
emb|CAB95289.1| (AL359779) putative two component system respons... 85 3e-16
gi|11465824 hypothetical chloroplast ORF 27. [Porphyra purpurea]... 85 3e-16
pir||G83463 probable methyltransferase PA1459 [imported] - Pseud... 85 3e-16
sp|Q05522|CHEB_BACSU PROTEIN-GLUTAMATE METHYLESTERASE >gi|107589... 84 4e-16
pir||F69824 two-component response regulator [YhcY] homolog yhcZ... 84 4e-16
sp|O52262|CHEB_PSEPU PROTEIN-GLUTAMATE METHYLESTERASE >gi|285360... 84 4e-16
gb|AAF67048.1|AF183382_8 (AF183382) methylesterase CheB [Pseudom... 84 4e-16
dbj|BAB04919.1| (AP001511) two-component response regulator [Bac... 84 4e-16
pir||JC5359 two-component regulator protein YfiK - Bacillus subt... 84 5e-16
sp|O58192|CHEB_PYRHO PROTEIN-GLUTAMATE METHYLESTERASE >gi|743507... 84 5e-16
pir||T35501 probable two-component system regulator - Streptomyc... 83 9e-16
gb|AAD30119.2| (AF135388) DNA binding response regulator RpaB [T... 83 9e-16
emb|CAB59507.1| (AL132648) putative two-component response regul... 83 1e-15
pir||C81104 transcription regulator, LuxR family NMB1250 [import... 82 2e-15
dbj|BAB05816.1| (AP001514) two-component response regulator [Bac... 82 2e-15
pir||T35199 probable two-component regulator - Streptomyces coel... 82 2e-15
dbj|BAA88407.1| (AB016841) chiR [Streptomyces thermoviolaceus] 82 2e-15
sp|P13800|DEGU_BACSU TRANSCRIPTIONAL REGULATORY PROTEIN DEGU (PR... 82 2e-15
sp|Q06065|ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY PROTEIN ... 82 2e-15
pir||E70045 two-component response regulator [YvqE] homolog yvqC... 82 2e-15
pir||S76149 sensory transduction system regulatory protein slr09... 82 3e-15
pir||G69780 two-component response regulator [YdfH] homolog ydfI... 82 3e-15
pir||T36530 probable two-component system regulator - Streptomyc... 82 3e-15
sp|P71129|CHEY_CAMJE CHEMOTAXIS PROTEIN CHEY HOMOLOG >gi|1127755... 81 3e-15
sp|P95582|GACA_PSEVI RESPONSE REGULATOR GACA (GLOBAL ACTIVATOR) ... 81 3e-15
dbj|BAB07506.1| (AP001520) two-component response regulator [Bac... 81 3e-15
pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant... 81 4e-15
gi|11498668 response regulator [Archaeoglobus fulgidus] >gi|7443... 81 4e-15
pir||G82805 two-component system, regulatory protein XF0450 [imp... 81 4e-15
pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphor... 81 4e-15
sp|P35163|RESD_BACSU TRANSCRIPTIONAL REGULATORY PROTEIN RESD >gi... 80 6e-15
gb|AAA98759.1| (L29642) response regulator/transcription activat... 80 6e-15
sp|P52940|SP0A_CLOPA STAGE 0 SPORULATION PROTEIN A HOMOLOG >gi|4... 80 6e-15
sp|P55184|YXJL_BACSU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN G... 80 6e-15
emb|CAA57487.1| (X81897) cheY [Helicobacter pylori] 80 6e-15
pir||S60880 phosphorylation-activated transcription factor Spo0A... 80 6e-15
pir||S60871 phosphorylation-activated transcription factor Spo0A... 80 6e-15
gb|AAB66375.1| (U97567) chemotaxis response regulator [Helicobac... 80 6e-15
sp|P71403|CHEY_HELPY CHEMOTAXIS PROTEIN CHEY HOMOLOG >gi|7443006... 80 6e-15
gb|AAD03502.1| (AF065156) response regulator [Pseudomonas fluore... 80 6e-15
pir||F71941 response regulator - Helicobacter pylori (strain J99... 80 6e-15
sp|P52931|SP0A_BACCI STAGE 0 SPORULATION PROTEIN A >gi|497953|gb... 80 6e-15
pir||T44264 sensory transduction system regulatory protein cheY ... 80 6e-15
gb|AAD27580.1|AF115381_1 (AF115381) response regulator GacA [Pse... 80 6e-15
dbj|BAB05983.1| (AP001514) two-component response regulator [Bac... 80 6e-15
sp|P54662|DEGU_BACBR TRANSCRIPTIONAL REGULATORY PROTEIN DEGU >gi... 80 8e-15
gb|AAA62132.2| (U01831) orf246; ompR homolog [Rhodella violacea] 80 8e-15
sp|P06628|SP0F_BACSU SPORULATION INITIATION PHOSPHOTRANSFERASE F... 80 1e-14
sp|Q52376|GACA_PSESY RESPONSE REGULATOR GACA (GLOBAL ACTIVATOR) ... 80 1e-14
sp|P28835|YC27_PORAE PROBABLE TRANSCRIPTIONAL REGULATOR YCF27 (O... 79 1e-14
pir||A70080 two-component response regulator [YxjM] homolog yxjL... 79 1e-14
pir||T36543 probable two-component system regulator - Streptomyc... 79 1e-14
emb|CAB65451.1| (AJ012051) VicR protein [Streptococcus pyogenes] 79 1e-14
dbj|BAB06154.1| (AP001515) MCP-glutamate methylesterase / two-co... 79 1e-14
dbj|BAB07347.1| (AP001519) two-component response regulator invo... 79 1e-14
sp|P43501|PILH_PSEAE PILH PROTEIN >gi|540957|pir||S40035 pilH pr... 79 2e-14
gi|11467431 ycf27 [Cyanophora paradoxa] >gi|1351749|sp|P48259|YC... 79 2e-14
gb|AAF70312.1|AF260326_1 (AF260326) SrrA [Staphylococcus aureus] 79 2e-14
emb|CAB99140.1| (AL390188) putative two-component system respons... 79 2e-14
emb|CAA47908.1| (X67676) phoP [Bacillus subtilis] 78 2e-14
gb|AAA22661.1| (M16775) phoP protein (put.); putative [Bacillus ... 78 2e-14
gb|AAA65231.1| (U09767) fixJ-like response regulator [Pseudomona... 78 2e-14
sp|P52941|SP0A_MOOTH STAGE 0 SPORULATION PROTEIN A HOMOLOG >gi|4... 78 2e-14
pir||S60881 phosphorylation-activated transcription factor Spo0A... 78 2e-14
sp|P13792|PHOP_BACSU ALKALINE PHOSPHATASE SYNTHESIS TRANSCRIPTIO... 78 2e-14
pir||T29457 probable two-component regulator - Streptomyces coel... 78 2e-14
emb|CAB64972.1| (AJ012050) VicR protein [Enterococcus faecalis] 78 2e-14
pir||H81295 probable two-component regulator Cj1491c [imported] ... 78 2e-14
prf||2016360A spo0F gene [Bacillus thuringiensis] 78 3e-14
pir||S76990 hypothetical protein - Synechocystis sp. (strain PCC... 78 3e-14
gi|11498855 response regulator [Archaeoglobus fulgidus] >gi|7443... 78 3e-14
gi|11499995 response regulator [Archaeoglobus fulgidus] >gi|7443... 78 3e-14
emb|CAA04532.1| (AJ001103) arcA [Lactococcus lactis] 78 3e-14
emb|CAC10294.1| (AL442629) putative two component system respons... 78 3e-14
sp|P10957|NARL_ECOLI NITRATE/NITRITE RESPONSE REGULATOR PROTEIN ... 78 4e-14
gb|AAA24199.1| (M24910) nitrogenase reductase [Escherichia coli] 78 4e-14
emb|CAA33023.1| (X14884) narL [Escherichia coli] 78 4e-14
pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONS... 78 4e-14
gb|AAD16452.1| (AF102271) response-regulator [Streptomyces coeli... 78 4e-14
pir||T36767 probable two-component system response regulator - S... 77 5e-14
emb|CAB54568.1| (AJ006392) response regulator [Streptococcus pne... 77 5e-14
pir||D83151 probable two-component response regulator PA3948 [im... 77 5e-14
pir||A38222 regulatory protein gacA - Pseudomonas fluorescens 77 7e-14
sp|P32967|GACA_PSEFL RESPONSE REGULATOR GACA (GLOBAL ACTIVATOR) ... 77 7e-14
pir||S74986 regulatory components of sensory transduction system... 77 7e-14
sp|Q51373|GACA_PSEAE RESPONSE REGULATOR GACA (GLOBAL ACTIVATOR) ... 77 7e-14
pir||D69158 sensory transduction regulatory protein - Methanobac... 77 7e-14
pir||E69796 two-component response regulator [YesM] homolog yesN... 77 7e-14
sp|P52942|SP0F_BACTK SPORULATION INITIATION PHOSPHOTRANSFERASE F... 76 9e-14
gb|AAB36948.1| (U78087) CheY [Burkholderia pseudomallei] 76 9e-14
pir||T08624 probable NtrC-type response regulator - Eubacterium ... 76 9e-14
emb|CAB87985.1| (AJ288947) Spo0A protein [Clostridium beijerinckii] 76 9e-14
pir||H82218 transcription regulator LuxR family VC1277 [imported... 76 9e-14
pir||B82292 response regulator VC0693 [imported] - Vibrio choler... 76 1e-13
dbj|BAB05663.1| (AP001513) two-component response regulator [Bac... 76 1e-13
prf||1306301A spo0F gene [Bacillus subtilis] 76 2e-13
sp|P52936|SP0A_CLOAB STAGE 0 SPORULATION PROTEIN A HOMOLOG >gi|4... 76 2e-13
pir||S60877 phosphorylation-activated transcription factor Spo0A... 76 2e-13
pir||F82205 chemotaxis protein CheY VC1398 [imported] - Vibrio c... 76 2e-13
emb|CAA63989.1| (X94328) spo0a [Clostridium difficile] 75 2e-13
sp|P52938|SP0A_CLODI STAGE 0 SPORULATION PROTEIN A HOMOLOG >gi|1... 75 2e-13
emb|CAB88489.1| (AL353816) putative two-component systen respons... 75 2e-13
pir||A72263 response regulator - Thermotoga maritima (strain MSB... 75 3e-13
pir||D83624 probable two-component response regulator PA0179 [im... 75 3e-13
gb|AAC28085.1| (AF100457) response regulator [Myxococcus xanthus] 75 3e-13
dbj|BAB05629.1| (AP001513) two-component response regulator [Bac... 75 3e-13
sp|O85128|CHEB_AGRTU PROTEIN-GLUTAMATE METHYLESTERASE >gi|328279... 74 4e-13
emb|CAB54578.1| (AJ006397) response regulator [Streptococcus pne... 74 4e-13
dbj|BAB05932.1| (AP001514) two-component response regulator [Bac... 74 4e-13
dbj|BAB06447.1| (AP001516) two-component response regulator [Bac... 74 4e-13
gb|AAD30120.2| (AF135389) DNA binding response regulator RpaA [T... 74 6e-13
emb|CAB94653.1| (AL359215) putative two-component system respons... 73 8e-13
gb|AAG34369.1|AF197465_1 (AF197465) nitrate/nitrite response reg... 73 8e-13
sp|P24086|YLB3_LEPIN HYPOTHETICAL 15.1 KDA PROTEIN IN LEUB 3'REG... 73 1e-12
pir||E69102 sensory transduction regulatory protein - Methanobac... 73 1e-12
pir||G75461 DNA-binding response regulator - Deinococcus radiodu... 73 1e-12
dbj|BAB05842.1| (AP001514) two-component response regulator [Bac... 73 1e-12
sp|Q04942|AFQ1_STRCO TRANSCRIPTIONAL REGULATORY PROTEIN AFSQ1 >g... 73 1e-12
gb|AAA68948.1| (U27988) GacA [Pseudomonas aeruginosa] 73 1e-12
dbj|BAB06876.1| (AP001517) two-component response regulator invo... 73 1e-12
emb|CAB92376.1| (AL356612) putative two-component response regul... 72 2e-12
sp|P14375|HYDG_ECOLI TRANSCRIPTIONAL REGULATORY PROTEIN HYDG >gi... 72 2e-12
pir||S76827 hypothetical protein slr1588 - Synechocystis sp. (st... 71 3e-12
pir||S76708 sensory transduction system regulatory protein slr01... 71 3e-12
gb|AAB71331.1| (U64519) CheY [Rhodospirillum centenum (Rhodocist... 71 3e-12
pir||T35597 probable two-component regulator - Streptomyces coel... 71 3e-12
emb|CAB76988.1| (AL159178) putative response regulator [Streptom... 71 3e-12
pir||F83640 probable two-component response regulator PA0034 [im... 71 3e-12
dbj|BAB06470.1| (AP001516) two-component response regulator [Bac... 71 3e-12
sp|P07027|UVRY_ECOLI UVRY PROTEIN >gi|72610|pir||QQEC24 probable... 71 4e-12
sp|P25852|HYDG_SALTY TRANSCRIPTIONAL REGULATORY PROTEIN HYDG >gi... 71 4e-12
sp|Q52883|CHEB_RHIME PROTEIN-GLUTAMATE METHYLESTERASE >gi|212079... 71 4e-12
gb|AAF33506.1| (AF170176) Salmonella typhimurium transcriptional... 71 4e-12
gb|AAA85582.1| (U30377) putative DNA-binding protein; two-compon... 71 5e-12
pir||T36077 probable two-component response regulator - Streptom... 71 5e-12
dbj|BAB05828.1| (AP001514) unknown conserved protein [Bacillus h... 71 5e-12
sp|P39486|YGD1_BACME HYPOTHETICAL 26.2 KD PROTEIN IN GDHI 5'REGI... 70 7e-12
gb|AAC44858.1| (U62038) chemotaxis protein [Campylobacter jejuni] 70 7e-12
emb|CAA64809.1| (X95564) expA [Erwinia carotovora] 70 9e-12
gb|AAD45905.1|AF161328_2 (AF161328) response regulator CstA [Cor... 70 9e-12
gb|AAD47845.1|AF171076_1 (AF171076) probable CheY1 protein [Vibr... 70 9e-12
pir||B82659 two-component system, regulatory protein XF1626 [imp... 70 9e-12
pir||D82380 chemotaxis protein CheY VCA1096 [imported] - Vibrio ... 70 9e-12
gb|AAC82663.1| (AF071105) GacA-like protein [Vibrio cholerae] 69 1e-11
pir||F82227 transcription regulator LuxR family VC1213 [imported... 69 1e-11
dbj|BAB04091.1| (AP001508) two-component response regulator [Bac... 69 1e-11
dbj|BAA14000.1| (D89625) adenylate cyclase [Anabaena sp.] 69 1e-11
emb|CAB82846.1| (AJ277082) putative response regulator [Amycolat... 69 1e-11
gb|AAF61932.1| (AF230804) sigma-54 activator protein Act1 [Myxoc... 69 1e-11
sp|P44895|CPXR_HAEIN TRANSCRIPTIONAL REGULATORY PROTEIN CPXR HOM... 69 2e-11
dbj|BAA24951.1| (AB006362) similar to sln1p of S. cerevisiae [Ca... 69 2e-11
pir||F83295 probable two-component response regulator PA2798 [im... 69 2e-11
pir||I40540 vsrD protein - Pseudomonas solanacearum >gi|603069|g... 68 3e-11
pir||H70705 probable phoP protein - Mycobacterium tuberculosis (... 68 3e-11
emb|CAB59609.1| (AL132662) putative response regulator [Streptom... 68 3e-11
gb|AAB38544.1| (L41661) srrB [Synechococcus sp.] 68 3e-11
gb|AAC44801.1| (U67869) SirA [Salmonella typhimurium] >gi|299252... 68 3e-11
sp|O87717|CHEB_CAUCR PROTEIN-GLUTAMATE METHYLESTERASE >gi|338736... 68 3e-11
sp|P16574|BVGA_BORPE VIRULENCE FACTORS PUTATIVE POSITIVE TRANSCR... 68 4e-11
sp|P14146|PHOP_SALTY VIRULENCE TRANSCRIPTIONAL REGULATORY PROTEI... 68 4e-11
pir||D69172 sensory transduction regulatory protein - Methanobac... 68 4e-11
emb|CAC10110.1| (AL442165) putative two component system respons... 68 4e-11
sp|P45671|NTRC_AZOBR NITROGEN ASSIMILATION REGULATORY PROTEIN >g... 67 6e-11
gb|AAB35496.1| (S80432) ntrC [Azospirillum brasilense, Yu62, Pep... 67 6e-11
gb|AAC25080.1| (AF044495) CheY homolog [Agrobacterium tumefaciens] 67 6e-11
gb|AAD10261.1| (AF036965) putative response regulator [Lactobaci... 67 6e-11
pir||G82975 probable two-component response regulator PA5364 [im... 67 6e-11
emb|CAB82844.1| (AJ277080) putative response regulator [Amycolat... 67 7e-11
pir||F69600 two-component response regulator citT - Bacillus sub... 66 1e-10
>pir||F75002 chemotaxis response regulator (chey) PAB1330 - Pyrococcus abyssi
(strain Orsay) >gi|5458974|emb|CAB50460.1| (AJ248288)
chemotaxis response regulator (cheY) [Pyrococcus abyssi]
Length = 120
Score = 231 bits (583), Expect = 2e-60
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD
Sbjct: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS
Sbjct: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
>pir||E71160 probable chemotaxis protein (cheY) - Pyrococcus horikoshii
>gi|3256887|dbj|BAA29570.1| (AP000002) 120aa long
hypothetical chemotaxis protein (cheY) [Pyrococcus
horikoshii]
Length = 120
Score = 231 bits (582), Expect = 2e-60
Identities = 119/120 (99%), Positives = 120/120 (99%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
MAR+LVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD
Sbjct: 1 MARVLVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS
Sbjct: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
>sp|Q56312|CHEY_THEMA CHEMOTAXIS PROTEIN CHEY >gi|7443033|pir||B72346 chemotaxis response
regulator CheY - Thermotoga maritima (strain MSB8)
>gi|2781289|pdb|1TMY| Chey From Thermotoga Maritima
(Apo-I) >gi|2781153|pdb|3TMY|A Chain A, Chey From
Thermotoga Maritima (Mn-Iii) >gi|2781154|pdb|3TMY|B
Chain B, Chey From Thermotoga Maritima (Mn-Iii)
>gi|2781128|pdb|2TMY| Chey From Thermotoga Maritima
(Apo-Ii) >gi|2781158|pdb|4TMY|A Chain A, Chey From
Thermotoga Maritima (Mg-Iv) >gi|2781159|pdb|4TMY|B Chain
B, Chey From Thermotoga Maritima (Mg-Iv)
>gi|940149|gb|AAA96389.1| (U30501) CheY [Thermotoga
maritima] >gi|4981223|gb|AAD35782.1|AE001741_15
(AE001741) chemotaxis response regulator CheY
[Thermotoga maritima]
Length = 120
Score = 175 bits (438), Expect = 2e-43
Identities = 81/115 (70%), Positives = 105/115 (90%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
R+L+VDDAAFMRM+LK I+T+AG+EV GEA+NG+EAVEKYK+LKPD+VTMDI MPEM+GI
Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGI 63
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
A+KEIMKIDPNAKII+ +A+GQ+A V+EA+K+GAK +IVKPFQ +V+E +N+V
Sbjct: 64 DAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 118
>gi|11498647 chemotaxis response regulator (cheY) [Archaeoglobus fulgidus]
>gi|7443007|pir||B69380 chemotaxis response regulator
(cheY) homolog - Archaeoglobus fulgidus
>gi|2649557|gb|AAB90207.1| (AE001031) chemotaxis
response regulator (cheY) [Archaeoglobus fulgidus]
Length = 121
Score = 163 bits (408), Expect = 6e-40
Identities = 79/117 (67%), Positives = 95/117 (80%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M ++L+VDD AFMR LL+ IL G ++ GEA NGK+AVE YKQLKPD+VTMDIVMPEM+
Sbjct: 1 MPKVLIVDDTAFMRKLLRNILFSGGFDIAGEAENGKQAVEMYKQLKPDIVTMDIVMPEMN 60
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
GI A+K I KIDP+AK++M TAVGQE V A+K GAKGYIVKPFQA KVIEE+ +V
Sbjct: 61 GIEALKAIKKIDPSAKVVMCTAVGQEQMVKAAIKLGAKGYIVKPFQAPKVIEELKKV 117
>dbj|BAB06163.1| (AP001515) two-component response regulator involved in modulation
of flagellar [Bacillus halodurans]
Length = 121
Score = 160 bits (400), Expect = 5e-39
Identities = 74/119 (62%), Positives = 102/119 (85%)
Query: 2 ARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
ARIL+VDDA+FMRM++K ILT+ G++VVGEA +G++AVEKYK+L PDLVTMDI MPE DG
Sbjct: 3 ARILIVDDASFMRMMIKDILTKNGYDVVGEAHDGEQAVEKYKELSPDLVTMDITMPEKDG 62
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
I A+K+I IDPNAK+IM +A+GQ+A V++A+++GAK +IVKPFQA +VI+ + + L +
Sbjct: 63 IAALKDIRAIDPNAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIDAIQKTLGA 121
>sp|P24072|CHEY_BACSU CHEMOTAXIS PROTEIN CHEY HOMOLOG >gi|98251|pir||A40874 chemotactic
tumbling protein cheY - Bacillus subtilis
>gi|142682|gb|AAA22311.1| (M59781) chemotactic response
protein [Bacillus subtilis] >gi|2634005|emb|CAB13506.1|
(Z99112) two-component response regulator [Bacillus
subtilis]
Length = 120
Score = 155 bits (389), Expect = 1e-37
Identities = 74/117 (63%), Positives = 98/117 (83%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
RIL+VDDAAFMRM++K IL + G EVV EA NG +AVEKYK+ PDLVTMDI MPEMDGI
Sbjct: 4 RILIVDDAAFMRMMIKDILVKNGFEVVAEAENGAQAVEKYKEHSPDLVTMDITMPEMDGI 63
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
TA+KEI +ID A+IIM +A+GQ++ V++A+++GAK +IVKPFQA +V+E +N+ L+
Sbjct: 64 TALKEIKQIDAQARIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLN 120
>dbj|BAB06687.1| (AP001517) two-component response regulator involved in modulation
of flagellar [Bacillus halodurans]
Length = 120
Score = 152 bits (380), Expect = 1e-36
Identities = 74/118 (62%), Positives = 97/118 (81%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
MA +LVVDDAAFMRM++K ILT+ EVVGEA+NG+EAV+ YK+ PDLVT+DI MPE D
Sbjct: 1 MATVLVVDDAAFMRMMIKDILTKNDFEVVGEAANGEEAVQLYKEHSPDLVTLDITMPEKD 60
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
GI A+KEI D +AK+IM +A+GQ+A V++A++SGAK +IVKPFQ +VIE +N+VL
Sbjct: 61 GIQALKEIKAYDADAKVIMCSAMGQQAMVIDAIQSGAKDFIVKPFQGDRVIEAINKVL 118
>gb|AAC27631.1| (AF076485) defective in fruiting DifD [Myxococcus xanthus]
Length = 122
Score = 141 bits (352), Expect = 2e-33
Identities = 70/116 (60%), Positives = 90/116 (77%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
R+LVVDDA FMR ++K I G EVVGEA+NG EAVEKYK+LKPDL TMDIVMP GI
Sbjct: 4 RVLVVDDAIFMRNMIKDIFASGGFEVVGEAANGLEAVEKYKELKPDLTTMDIVMPFKSGI 63
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
A +EI+K D +A +IM +A+GQE+ VMEA+++GA +IVKPF+A+ V+ V +VL
Sbjct: 64 EATREIIKADSSAVVIMCSALGQESLVMEAIEAGASDFIVKPFRAEDVLAVVKKVL 119
>emb|CAA53764.1| (X76170) cheY [Listeria monocytogenes]
Length = 119
Score = 138 bits (345), Expect = 2e-32
Identities = 63/116 (54%), Positives = 91/116 (78%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M ++L+VDDA FMR ++K I+ + EVV EA NG EAV+KY ++KPD+VT+DI MPEMD
Sbjct: 1 MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMD 60
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNR 116
G+ A+ +IM DP+AK+IM +A+GQ+ V++A+K GAK +IVKPFQA +V+E + +
Sbjct: 61 GLEALAQIMAKDPSAKVIMCSAMGQQGMVVDAIKKGAKDFIVKPFQADRVLEALEK 116
>sp|P45709|CCDB_BACSU CCDB PROTEIN >gi|1361404|pir||S57405 response regulator homolog
yneI - Bacillus subtilis >gi|870926|emb|CAA61117.1|
(X87845) response regulator [Bacillus subtilis]
>gi|1405450|emb|CAA97595.1| (Z73234) YneI [Bacillus
subtilis] >gi|2634178|emb|CAB13678.1| (Z99113) alternate
gene name: yoxH~similar to two-component response
regulator (CheY homolog) [Bacillus subtilis]
Length = 120
Score = 132 bits (329), Expect = 1e-30
Identities = 62/118 (52%), Positives = 92/118 (77%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M R+LVVDDA FMR+ +++IL +A + + GEA++G++A + YK+L+PDLVTMDI MP +
Sbjct: 1 MTRVLVVDDAKFMRVKIREILEEANYIIAGEAADGEQAADLYKKLRPDLVTMDITMPVKN 60
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
GI A+++I+ DP AK+IM TA+ Q+ V EA++ GAK +IVKPF+ KV+E V+RV+
Sbjct: 61 GIKALRDILTFDPKAKVIMCTAMRQQRIVTEAIELGAKDFIVKPFEETKVLEAVSRVM 118
>gb|AAC33471.1| (AF074950) CheY [Treponema denticola]
Length = 146
Score = 123 bits (306), Expect = 6e-28
Identities = 65/118 (55%), Positives = 86/118 (72%), Gaps = 2/118 (1%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKP--DLVTMDIVMPEMD 60
+ILVVDD+ F+ + +IL G+EVV A +G E VEKYK+L P DLVTMDI MP+MD
Sbjct: 26 KILVVDDSIFVTKQIGQILNSEGYEVVATAVDGFEGVEKYKELCPNVDLVTMDITMPKMD 85
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G+TA+++IM D NAK++MI+A+G+E V +AL GAK YIVKP +KV+E V VL
Sbjct: 86 GLTALEQIMAFDKNAKVVMISALGKEELVKKALLLGAKNYIVKPLDRKKVLERVAGVL 143
>pir||S58645 response regulator cheY [validated] - Halobacterium salinarum
>gi|994802|emb|CAA60161.1| (X86407) cheY [Halobacterium
salinarum] >gi|10580529|gb|AAG19395.1| (AE005033)
chemotaxis protein; CheY [Halobacterium sp. NRC-1]
Length = 120
Score = 121 bits (301), Expect = 2e-27
Identities = 62/118 (52%), Positives = 84/118 (70%), Gaps = 1/118 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
++L+VDD+ FMR LL++IL + E+ EA NG EAVE YK+ PDLV MDIVMP DGI
Sbjct: 4 QVLLVDDSEFMRNLLREILEEE-FEIADEAENGVEAVEMYKEYDPDLVMMDIVMPIRDGI 62
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
A EI + D A IIM T++GQE K+ +A+K+GA GYI KPFQ V++ ++ VL++
Sbjct: 63 EATSEIKEFDAGAHIIMCTSIGQEEKMKKAVKAGADGYITKPFQKPSVMDAISDVLTA 120
>sp|P96126|CHEY_TREPA CHEMOTAXIS PROTEIN CHEY >gi|7443016|pir||D71335 probable chemotaxis
response regulator (cheY) - syphilis spirochete
>gi|1765976|gb|AAC45558.1| (U61851) chemotaxis protein
CheY [Treponema pallidum] >gi|3322643|gb|AAC65351.1|
(AE001215) chemotaxis response regulator (cheY)
[Treponema pallidum]
>gi|5565836|gb|AAD45223.1|AF105017_4 (AF105017)
chemotaxis protein CheY [Treponema pallidum subsp.
pertenue]
Length = 144
Score = 121 bits (300), Expect = 3e-27
Identities = 61/118 (51%), Positives = 86/118 (72%), Gaps = 2/118 (1%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKP--DLVTMDIVMPEMD 60
R+LVVDD+ F+ + +ILT G+EV A +G + VEKYK + P DLVTMDI MP+MD
Sbjct: 26 RVLVVDDSMFVSKQIGQILTSEGYEVADTAVDGVDGVEKYKAMSPGVDLVTMDITMPKMD 85
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
GITA+++I++ D NAK+++I+A+G+E V +AL GAK YIVKP +KV+E + VL
Sbjct: 86 GITALEKILEFDKNAKVVIISALGKEELVKKALLLGAKNYIVKPLDRKKVLERIASVL 143
>pir||F75521 DNA-binding response regulator - Deinococcus radiodurans (strain
R1) >gi|6458112|gb|AAF10009.1|AE001902_9 (AE001902)
DNA-binding response regulator [Deinococcus radiodurans]
Length = 214
Score = 111 bits (275), Expect = 2e-24
Identities = 53/117 (45%), Positives = 79/117 (67%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M R+L+ DD A R L+ +L G V+GEA+NG+EAV +PD++ MDI MPE+D
Sbjct: 1 MIRVLLADDHALFRQGLRSLLESEGMRVIGEAANGREAVRYAADTQPDVILMDIQMPELD 60
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
G+ A + I++I+P A++IMIT Q+ V EA+K+GA+GYI+K A +I+ + RV
Sbjct: 61 GVKATQSILEINPQARVIMITMYRQDRYVFEAVKAGARGYILKDADAGTLIDAITRV 117
>pir||G70183 chemotaxis response regulator (cheY-3) homolog - Lyme disease
spirochete >gi|2688604|gb|AAC67021.1| (AE001168)
chemotaxis response regulator (cheY-3) [Borrelia
burgdorferi]
Length = 146
Score = 106 bits (261), Expect = 1e-22
Identities = 54/116 (46%), Positives = 77/116 (65%), Gaps = 2/116 (1%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKP--DLVTMDIVMPEMDG 61
+L+VDD+ F L +I T G ++ A++G+EAV KYK P D+VT+DI MP+MDG
Sbjct: 28 VLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLDITMPKMDG 87
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
IT + IM+ D NA++IMI+A+G+E V + L GAK +IVKP KV++ V V
Sbjct: 88 ITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSV 143
>gb|AAB81651.1| (U61498) CheY [Borrelia burgdorferi]
Length = 146
Score = 104 bits (257), Expect = 3e-22
Identities = 53/116 (45%), Positives = 76/116 (64%), Gaps = 2/116 (1%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKP--DLVTMDIVMPEMDG 61
+L+VDD+ F L +I T G ++ A++G+EAV KYK P D+VT+D MP+MDG
Sbjct: 28 VLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLDFTMPKMDG 87
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
IT + IM+ D NA++IMI+A+G+E V + L GAK +IVKP KV++ V V
Sbjct: 88 ITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSV 143
>gi|11498646 protein-glutamate methylesterase (cheB) [Archaeoglobus fulgidus]
>gi|7531056|sp|O29221|CHEB_ARCFU PROTEIN-GLUTAMATE
METHYLESTERASE >gi|7435066|pir||A69380 protein-glutamate
methylesterase (EC 3.1.1.61) cheB - Archaeoglobus
fulgidus >gi|2649549|gb|AAB90199.1| (AE001031)
protein-glutamate methylesterase (cheB) [Archaeoglobus
fulgidus]
Length = 349
Score = 104 bits (256), Expect = 4e-22
Identities = 54/104 (51%), Positives = 78/104 (74%), Gaps = 3/104 (2%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
R+LVVDD+A +RM + ILT+AG EVV A NG+EAVEK +LKPD++T+DI MPEMDG+
Sbjct: 2 RVLVVDDSALVRMAVTDILTKAGIEVVDTAKNGREAVEKALKLKPDVITLDINMPEMDGL 61
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEA--KVMEALKSGAKGYIVKP 104
TA+K IM+ P ++M++++ +E + +EALK GA ++ KP
Sbjct: 62 TALKLIMEKQP-TPVVMLSSLTKEGARETLEALKIGAVDFVTKP 104
>gi|11499482 response regulator [Archaeoglobus fulgidus] >gi|7443021|pir||A69487
response regulator homolog - Archaeoglobus fulgidus
>gi|2648641|gb|AAB89351.1| (AE000971) response regulator
[Archaeoglobus fulgidus]
Length = 117
Score = 101 bits (250), Expect = 2e-21
Identities = 55/120 (45%), Positives = 85/120 (70%), Gaps = 4/120 (3%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M +++VVDD MR +LK +L ++V+ EASNG+EAVE Y++ +PD+V MD++MP M+
Sbjct: 1 MIKVMVVDDEIAMREILKIMLKD--YKVI-EASNGREAVELYREERPDIVLMDVMMPLMN 57
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
GI A EI KIDP+AKI+ ITA +K + +++GA + KPF ++V+E + R+L+S
Sbjct: 58 GIEATSEIKKIDPDAKIVAITAYA-SSKGEKVIEAGADYILKKPFTRKEVVELIKRILNS 116
>emb|CAB54571.1| (AJ006393) response regulator [Streptococcus pneumoniae]
Length = 210
Score = 97.9 bits (240), Expect = 3e-20
Identities = 51/116 (43%), Positives = 77/116 (65%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
+IL+VDD +R+ LK Q EVVGEASNG + ++ +L+PD++ MDIVMPEM+G
Sbjct: 2 KILLVDDHEMVRLGLKSYFDLQDDVEVVGEASNGSQGIDLALELRPDVIVMDIVMPEMNG 61
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
I A I+K P AKI+++T+ K+M L +GAKGY++K A +++ V++V
Sbjct: 62 IDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSSADELLHAVSKV 117
>sp|Q9WYN9|CHEB_THEMA PROTEIN-GLUTAMATE METHYLESTERASE >gi|7435065|pir||F72380
protein-glutamate methylesterase - Thermotoga maritima
(strain MSB8) >gi|4980913|gb|AAD35493.1|AE001720_7
(AE001720) protein-glutamate methylesterase [Thermotoga
maritima]
Length = 344
Score = 97.5 bits (239), Expect = 4e-20
Identities = 55/105 (52%), Positives = 79/105 (74%), Gaps = 4/105 (3%)
Query: 3 RILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+LVVDD+AFMRM+LK I+ +Q +VVG A +G EAVEK +LKPD++TMDI MP ++G
Sbjct: 7 RVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMDIEMPNLNG 66
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQE--AKVMEALKSGAKGYIVKP 104
I A+K IMK P ++IM++++ +E A +EAL++GA +I KP
Sbjct: 67 IEALKLIMKKAP-TRVIMVSSLTEEGAAITIEALRNGAVDFITKP 110
>pir||T35758 probable response regulator - Streptomyces coelicolor
>gi|5689906|emb|CAB52069.1| (AL109732) putative response
regulator [Streptomyces coelicolor A3(2)]
Length = 218
Score = 96.3 bits (236), Expect = 9e-20
Identities = 47/117 (40%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
R+++ +D A +R+ LK++L + G+ VVGEA +G+EAVE ++ +PDLV +D+ MP+MDGI
Sbjct: 26 RVVIAEDEALIRLDLKEMLEEEGYSVVGEAGDGEEAVELAREHRPDLVILDVKMPKMDGI 85
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
+A ++I + + A ++M+TA Q V A +GA Y+VKPF V+ + +S
Sbjct: 86 SAAEKIAE-ESIAPVLMLTAFSQRDLVERARDAGAMAYLVKPFSKSDVVPAIEMAVS 141
>pir||F70168 chemotaxis response regulator (cheY-1) homolog - Lyme disease
spirochete >gi|2688460|gb|AAC66907.1| (AE001156)
chemotaxis response regulator (cheY-1) [Borrelia
burgdorferi]
Length = 133
Score = 94.8 bits (232), Expect = 3e-19
Identities = 49/117 (41%), Positives = 80/117 (67%), Gaps = 5/117 (4%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKY-KQLKPDLVTMDIVMPEMDG 61
+ L+ DD+ FMR L KIL+Q G + EA +G +AV+++ KQ DL+T+DI M MDG
Sbjct: 13 KALIADDSLFMRKNLIKILSQLGFKEFLEAEDGIQAVKEFEKQNNIDLITLDITMMGMDG 72
Query: 62 ITAVKEIMKIDPN----AKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEV 114
ITA++ + +I+ I+M+TA+G++ + +AL GA+GYI KPF+ +++IE++
Sbjct: 73 ITALERMYEINKKLLKKVNILMVTAIGKQELIQKALSLGARGYITKPFKKEQIIEQI 129
>pir||S75143 sensory transduction system regulatory protein slr1760 -
Synechocystis sp. (strain PCC 6803)
>gi|1652133|dbj|BAA17057.1| (D90903) regulatory
components of sensory transduction system [Synechocystis
sp.]
Length = 315
Score = 94.4 bits (231), Expect = 4e-19
Identities = 51/119 (42%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 2 ARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
A+ILVVDD FMRM L+ L + GH V A+NG+EA+ K+ ++KP++V +D VMP MDG
Sbjct: 12 AKILVVDDDGFMRMQLRVYLQKEGHRVE-LATNGEEALTKFAEIKPEVVLLDAVMPVMDG 70
Query: 62 ITAVKEIMKI--DPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+ +MKI +P+ ++MIT + EA V A ++GA Y+ KP + + V R+L
Sbjct: 71 FACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129
>gi|11499830 response regulator [Archaeoglobus fulgidus] >gi|7443019|pir||A69531
response regulator homolog - Archaeoglobus fulgidus
>gi|2648277|gb|AAB89010.1| (AE000949) response regulator
[Archaeoglobus fulgidus]
Length = 121
Score = 94.4 bits (231), Expect = 4e-19
Identities = 52/114 (45%), Positives = 78/114 (67%), Gaps = 4/114 (3%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
R+L+VDD +R ++K +L ++++ EASNG+EAV YK KPDLV MDI MP+MDG+
Sbjct: 5 RLLIVDDDDSIREIVKIMLKD--YDII-EASNGEEAVRAYKMFKPDLVLMDIQMPKMDGV 61
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNR 116
A +EI+KIDP+AKI+ +TA + ++ E LK GA + KPF + + E + +
Sbjct: 62 EATREILKIDPHAKIVGLTAFAR-SRGREMLKIGALEVVEKPFTRRTLKELIEK 114
>emb|CAB90919.1| (AL355774) putative DNA-binding response regulator [Streptomyces
coelicolor A3(2)]
Length = 252
Score = 94.4 bits (231), Expect = 4e-19
Identities = 51/116 (43%), Positives = 73/116 (61%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+LVVDD A R L+ +L + +VVGEA +G EAVEK L PD+V MD+ MP+ G
Sbjct: 37 RVLVVDDHALFRRGLEIVLAAEEDIQVVGEAGDGAEAVEKAADLLPDIVLMDVRMPKRGG 96
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
I A I ++ P+AKIIM+T +EA + +A+K+GA GY++K +V + V
Sbjct: 97 IEACTSIKEVAPSAKIIMLTISDEEADLYDAIKAGATGYLLKEISTDEVATAIRAV 152
>emb|CAB44989.1| (AJ131854) NarL protein [Pseudomonas stutzeri]
Length = 218
Score = 94.0 bits (230), Expect = 5e-19
Identities = 46/113 (40%), Positives = 77/113 (67%), Gaps = 1/113 (0%)
Query: 3 RILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
RIL+VDD MR L+ +L + E+VGEA NG++A+ Q++PDL+ MD+ MP +DG
Sbjct: 8 RILLVDDHPMMRRGLRDLLDLEDDLEMVGEAGNGEDAIRLALQIEPDLILMDLNMPGIDG 67
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEV 114
+ + + D +A+IIM T +++ V+EAL++GA GY++K A+++IE++
Sbjct: 68 LETTRRMRDADIDARIIMFTVSDEQSHVLEALRNGADGYLLKDMDAEQLIEQI 120
>gi|11498061 response regulator [Archaeoglobus fulgidus] >gi|7443023|pir||A69306
response regulator homolog - Archaeoglobus fulgidus
>gi|2650175|gb|AAB90783.1| (AE001073) response regulator
[Archaeoglobus fulgidus]
Length = 125
Score = 93.2 bits (228), Expect = 8e-19
Identities = 53/117 (45%), Positives = 80/117 (68%), Gaps = 5/117 (4%)
Query: 3 RILVV-DDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R++VV DD+A + + +I+ +E++ A+NG+EAV+KYK KPD+V MD++MP MDG
Sbjct: 12 RVMVVEDDSAVLETV--QIMLGDKYEII-PATNGEEAVKKYKMFKPDVVLMDVMMPVMDG 68
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+ A KEI KIDP AKII +TA ++ K E L +GA + KPF +++IE + + L
Sbjct: 69 VEATKEIKKIDPQAKIIGLTAYARK-KGKELLDAGALEVVEKPFTRRQLIEVIEKYL 124
>pir||H70558 hypothetical protein Rv1626 - Mycobacterium tuberculosis (strain
H37RV) >gi|2113910|emb|CAB08879.1| (Z95554) hypothetical
protein Rv1626 [Mycobacterium tuberculosis]
Length = 205
Score = 92.1 bits (225), Expect = 2e-18
Identities = 50/117 (42%), Positives = 71/117 (59%), Gaps = 1/117 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
R+L+ +D A +RM L ++L + G+E+VGEA +G+EAVE + KPDLV MD+ MP DGI
Sbjct: 15 RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGI 74
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
A EI A I+++TA Q V A +GA Y+VKPF +I + +S
Sbjct: 75 DAASEIAS-KRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVS 130
>pir||T36318 two-component response regulator - Streptomyces coelicolor
>gi|1293660|gb|AAB08053.1| (U51332) AbsA2 [Streptomyces
coelicolor] >gi|4490635|emb|CAB38597.1| (AL035654) two
component response regulator [Streptomyces coelicolor
A3(2)]
Length = 222
Score = 91.3 bits (223), Expect = 3e-18
Identities = 46/120 (38%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M R+L+ DD +R ++ ILT + G EVV EAS+G+EAVE ++ +PD+ +DI MPEM
Sbjct: 1 MIRVLLADDETIIRAGVRSILTTEPGIEVVAEASDGREAVELARKHRPDVALLDIRMPEM 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
DG+TA E+ +P+ ++++T G++ + AL G G+++K + +I V V S
Sbjct: 61 DGLTAAGEMRTTNPDTAVVVLTTFGEDRYIERALDQGVAGFLLKASDPRDLISGVRAVAS 120
>pir||H75381 DNA-binding response regulator - Deinococcus radiodurans (strain
R1) >gi|6459320|gb|AAF11120.1|AE001999_4 (AE001999)
DNA-binding response regulator [Deinococcus radiodurans]
Length = 225
Score = 90.5 bits (221), Expect = 5e-18
Identities = 45/114 (39%), Positives = 80/114 (69%), Gaps = 1/114 (0%)
Query: 3 RILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+L+VDD A +R L+ L G EVVGEA+NG+EA+++ ++L+P++V MD++MP MDG
Sbjct: 15 RVLLVDDHAVVRQGLRLFLGLDEGIEVVGEAANGEEALQEAERLRPEVVVMDLMMPVMDG 74
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVN 115
ITA +E+ + P+ ++I +T+ +E KV A+++GA Y++K + + + ++
Sbjct: 75 ITATRELRRRLPDTEVIALTSTLEENKVNGAIEAGAISYMLKDASSDTLADAIH 128
>pir||F83265 probable two-component response regulator PA3045 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9949150|gb|AAG06433.1|AE004729_7 (AE004729) probable
two-component response regulator [Pseudomonas
aeruginosa]
Length = 207
Score = 90.1 bits (220), Expect = 7e-18
Identities = 41/119 (34%), Positives = 73/119 (60%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M+RIL+VDD +RM +K +L GH++VG+ NG +A+ ++LKPDLV +DI +P +D
Sbjct: 1 MSRILIVDDHPVIRMAMKMLLEAEGHQIVGDTDNGVDAISLGRELKPDLVILDIGIPRLD 60
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ + +M + KI+++T + ++++GA G++ K +++ VN V S
Sbjct: 61 GLEVISRLMVLALPLKILVLTGQSASLFALRSMQAGAAGFVCKQGGLAELVTAVNAVAS 119
>dbj|BAB03325.1| (AB035448) response regulator [Staphylococcus aureus]
Length = 209
Score = 90.1 bits (220), Expect = 7e-18
Identities = 45/115 (39%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
Query: 3 RILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
++L VDD +R+ + L TQ+ EVVGE ++GKEA+ K +LKPDL+ MD++M +MDG
Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDG 63
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNR 116
+ A +I K P K++M+T+ ++ +V AL +G YI+K A+ + + V +
Sbjct: 64 VEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRK 118
>gi|11498980 response regulator [Archaeoglobus fulgidus] >gi|7443018|pir||G69422
response regulator homolog - Archaeoglobus fulgidus
>gi|2649189|gb|AAB89861.1| (AE001009) response regulator
[Archaeoglobus fulgidus]
Length = 122
Score = 90.1 bits (220), Expect = 7e-18
Identities = 50/118 (42%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
R+L+V+D A + ++ +++ + + A+NG+EAV YK KPD+V MDI MP MDG+
Sbjct: 6 RVLIVEDDAAILEAVQLMISDRYNLLT--ATNGEEAVRLYKMFKPDIVLMDIAMPVMDGV 63
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
A KEI K DP+AKII ITA + + E L +GA + KPF +K++E + + L S
Sbjct: 64 EAAKEIKKFDPDAKIIGITAYARR-RGQELLDAGALEILEKPFTRKKLLETIEKYLPS 120
>pir||T36862 probable two-component response regulator - Streptomyces coelicolor
>gi|5123537|emb|CAB45293.1| (AL079332) putative two
component response regulator [Streptomyces coelicolor
A3(2)]
Length = 210
Score = 89.3 bits (218), Expect = 1e-17
Identities = 41/104 (39%), Positives = 74/104 (70%), Gaps = 1/104 (0%)
Query: 1 MARILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M ++L+VDD +R L+ L Q EVVGEA++G E V++ ++LKPD++ MD+ MP M
Sbjct: 1 MIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVDRAQELKPDVILMDVKMPGM 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVK 103
DG+ A++ + ++D +A+++++T+ ++ V+ AL++GA GY+ K
Sbjct: 61 DGVDALRRLRELDNHARVLVVTSFTEQRTVVPALRAGAAGYVYK 104
>gb|AAF32418.1| (AF069392) chemotaxis protein CheB [Vibrio parahaemolyticus]
Length = 369
Score = 88.9 bits (217), Expect = 2e-17
Identities = 48/106 (45%), Positives = 69/106 (64%), Gaps = 2/106 (1%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
++LVVDD++F R + +I+ EV+ A NG+EAVEK K LKPD++TMDI MP MDG
Sbjct: 4 KVLVVDDSSFFRRRVSEIINSESRLEVIDVAVNGREAVEKAKALKPDVITMDIEMPVMDG 63
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAK-VMEALKSGAKGYIVKPFQ 106
ITAV+EIM P ++ + AK ++AL +GA ++ K F+
Sbjct: 64 ITAVREIMAASPTPILMFSSLTHDGAKATLDALDAGALDFLPKKFE 109
>dbj|BAB04770.1| (AP001510) two-component response regulator [Bacillus halodurans]
Length = 212
Score = 88.2 bits (215), Expect = 3e-17
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
MA +L+ +D +R LK ++ Q V+ EASNG+EAVE Y++ DLV MD+ MP
Sbjct: 1 MANLLLAEDQHLVRQGLKMMIEQDETLHVIAEASNGQEAVEAYERYLIDLVLMDVRMPSK 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A KEI P AKI+++T + +EALK GA GY++K A ++I + L+
Sbjct: 61 TGLEATKEIRARHPEAKILILTTFADDEYALEALKYGACGYLLKDADADRLIHSIKSALN 120
>pir||T36528 probable two-component system regulator - Streptomyces coelicolor
>gi|4753862|emb|CAB42025.1| (AL049754) putative
two-component system regulator [Streptomyces coelicolor
A3(2)]
Length = 221
Score = 87.8 bits (214), Expect = 3e-17
Identities = 45/116 (38%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+L+ DD +R +L EV GEA NG+EAV K ++L PD+V MDI MPE++G
Sbjct: 4 RVLIADDQMMVREGFSVLLNAMPDIEVAGEAVNGREAVAKVRELSPDVVLMDIRMPELNG 63
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
I A +EI+ D +K++++T + V +AL++GA G+++K A+++ + V V
Sbjct: 64 IEATREIVAADSTSKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVV 119
>dbj|BAB07561.1| (AP001520) two-component response regulator [Bacillus halodurans]
Length = 530
Score = 87.4 bits (213), Expect = 5e-17
Identities = 46/119 (38%), Positives = 72/119 (59%), Gaps = 1/119 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M +L+VDD R LK L + +VGEASNG++A+EK + +PDL+ MDI MP +
Sbjct: 1 MINVLIVDDEQIEREGLKLFLKDRPNIHIVGEASNGRQAIEKALETQPDLMMMDIKMPGV 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
DG+ AVKEI + P + IM++A E ++ G K Y++KP + V+ ++R++
Sbjct: 61 DGVQAVKEIKQQLPETEFIMVSAFDTFEYAREVMRYGVKEYLLKPTTKEDVLTALDRIV 119
>dbj|BAB05299.1| (AP001512) two-component response regulator [Bacillus halodurans]
Length = 238
Score = 87.0 bits (212), Expect = 6e-17
Identities = 50/117 (42%), Positives = 74/117 (62%), Gaps = 2/117 (1%)
Query: 2 ARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
A+ILVVDD +R LLK L + ++V EAS+GKEA+EK D++ +D++MPEMDG
Sbjct: 5 AKILVVDDEDRIRNLLKMYLEREAYDVE-EASDGKEALEKALAFDYDVILLDLMMPEMDG 63
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
I +++ K IIM+TA G+EA ++ + G YIVKPF ++V+ V +L
Sbjct: 64 IEVCQKLRK-QKATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALL 119
>sp|O87125|CHEB_PSEAE PROTEIN-GLUTAMATE METHYLESTERASE >gi|11262675|pir||T46615
chemotaxis protein cheB [imported] - Pseudomonas
aeruginosa >gi|3721571|dbj|BAA33550.1| (AB012767) CheB
[Pseudomonas aeruginosa]
Length = 368
Score = 86.2 bits (210), Expect = 1e-16
Identities = 46/106 (43%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
++LVVDD+ F R + +IL+ G +VVG A+NG+EA+E+ L+PD++TMD MP MDG
Sbjct: 4 KVLVVDDSGFFRRRVSEILSADGQIQVVGTATNGREAIEQALALRPDVITMDYEMPLMDG 63
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKV-MEALKSGAKGYIVKPFQ 106
ITAV+ IM+ P ++ + + A+V ++AL +GA Y+ K F+
Sbjct: 64 ITAVRNIMQRCPTPVLMFSSLTHEGARVTLDALDAGAVDYLPKNFE 109
>gi|11467627 ompR homolog [Guillardia theta] >gi|6136611|sp|O78428|YC27_GUITH
PROBABLE TRANSCRIPTIONAL REGULATOR YCF27 (OMPR-LIKE
PROTEIN) >gi|3602952|gb|AAC35613.1| (AF041468) ompR
homolog [Guillardia theta]
Length = 254
Score = 85.4 bits (208), Expect = 2e-16
Identities = 47/116 (40%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
++L+VDD A +R +L+ L+ G+ VV AS+G+EA+ + Q PD+V +DI+MP++DG
Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVV-TASDGEEALNLFHQEMPDVVILDIMMPKLDGY 74
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+EI K D + IIM+TA+G A + L+ GA Y+VKPF +++ + VL
Sbjct: 75 GVCQEIRK-DSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVL 129
>pir||D72374 response regulator - Thermotoga maritima (strain MSB8)
>gi|4980976|gb|AAD35552.1|AE001724_10 (AE001724)
response regulator [Thermotoga maritima]
Length = 122
Score = 85.4 bits (208), Expect = 2e-16
Identities = 46/119 (38%), Positives = 75/119 (62%), Gaps = 3/119 (2%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
++L+VDD+A +R ++ L + G+EV+ EA NG+ A+EK + PDL+ +DI+MP MDG
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVI-EAENGQIALEKLSEFTPDLIVLDIMMPVMDGF 62
Query: 63 TAVKEIMKID--PNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
T +K++ + + +I++TA G E AL GA+ + KPF + IEEV +L+
Sbjct: 63 TVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121
>pir||H82122 protein-glutamate methylesterase CheB VC2062 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656608|gb|AAF95208.1| (AE004280) protein-glutamate
methylesterase CheB [Vibrio cholerae]
Length = 377
Score = 85.4 bits (208), Expect = 2e-16
Identities = 47/107 (43%), Positives = 72/107 (66%), Gaps = 4/107 (3%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
++LVVDD++F R + +I+ EV+ A NGKEAVEK +LKPD++TMDI MP MDG
Sbjct: 4 KVLVVDDSSFFRRRVSEIINSESRLEVIDVAVNGKEAVEKAARLKPDVITMDIEMPVMDG 63
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEA--KVMEALKSGAKGYIVKPFQ 106
I+AV+EIM +P I+M +++ + ++AL +GA ++ K F+
Sbjct: 64 ISAVREIMANNP-VPILMFSSLTHDGAKATLDALDAGALDFLPKKFE 109
>gb|AAC45136.1| (U63847) ORF1; homolog to response regulator of a putative signal
transduction system [Streptomyces lividans]
Length = 225
Score = 85.4 bits (208), Expect = 2e-16
Identities = 46/116 (39%), Positives = 72/116 (61%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
R++V DD A +R + IL G +VV EA+NG+EAVE + +PD+V MDI MPE+DG+
Sbjct: 6 RVVVADDQALVRTGFRLILMADGIDVVAEAANGEEAVEVVLRTRPDIVLMDIRMPELDGL 65
Query: 63 TAVKEIMKIDPNA-KIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
A + I+ P+A ++IM+T + V AL +GA G+++K + ++ V V
Sbjct: 66 EATRRILTGAPDAPRVIMLTTFDLDDLVYAALAAGASGFLLKDVTPEHLVAAVRLV 121
>sp|P52929|SP0A_BACBR STAGE 0 SPORULATION PROTEIN A >gi|2119860|pir||S60869
phosphorylation-activated transcription factor Spo0A -
Bacillus brevis (fragment) >gi|497949|gb|AAA18872.1|
(U09971) Spo0A [Brevibacillus brevis]
Length = 212
Score = 85.4 bits (208), Expect = 2e-16
Identities = 41/119 (34%), Positives = 75/119 (62%), Gaps = 2/119 (1%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
+L D+ F+ +L + I +Q V+G A NG E V ++ PD++ +DI+MP +DG+
Sbjct: 7 LLADDNREFVSLLEEYISSQYDMNVIGVAYNGNEVVRLLQERVPDVLILDIIMPHLDGLA 66
Query: 64 AVKEI--MKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
+++I M++ P KIIM+TA GQE +A++ GA YI+KPF + + + + +++++
Sbjct: 67 VLEQIQAMRLSPQPKIIMLTAFGQEEITKKAVELGAAYYILKPFDMEVLAQRIRQIITT 125
>sp|Q48300|CHEB_HALSA PROTEIN-GLUTAMATE METHYLESTERASE >gi|1363463|pir||S58646
protein-glutamate methylesterase (EC 3.1.1.61) cheB
[similarity] - Halobacterium salinarum
>gi|994803|emb|CAA60162.1| (X86407) cheB [Halobacterium
salinarum]
Length = 347
Score = 85.0 bits (207), Expect = 2e-16
Identities = 46/106 (43%), Positives = 65/106 (60%), Gaps = 3/106 (2%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M LVVDD+ FMR ++ IL G +VVG A NG A++ ++PD++TMD+ MPEMD
Sbjct: 1 MTEALVVDDSHFMRTVISDILEDGGVDVVGTAENGARALDAVTDVQPDVITMDVEMPEMD 60
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQE--AKVMEALKSGAKGYIVKP 104
GI A EIM+ P I+M++A+ E +EA++ GA KP
Sbjct: 61 GIEATAEIMREQP-TPILMVSALTTEDADATLEAMEKGAIDTFAKP 105
>pir||E75002 protein-glutamate methylesterase (cheb) PAB1331 - Pyrococcus abyssi
(strain Orsay) >gi|5458973|emb|CAB50459.1| (AJ248288)
protein-glutamate methylesterase (cheB) [Pyrococcus
abyssi]
Length = 368
Score = 85.0 bits (207), Expect = 2e-16
Identities = 49/105 (46%), Positives = 72/105 (67%), Gaps = 4/105 (3%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+LVVDD+AFMR +LK I+ EV GEA +G EA+E ++ +PD+VT+D+ MP M+G
Sbjct: 9 RVLVVDDSAFMRKVLKDIINSDPELEVCGEARDGIEAIEMVQKCRPDVVTLDVEMPRMNG 68
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEA--KVMEALKSGAKGYIVKP 104
+ A++ IMK P +IMI+A+ QE ++AL+ GA +I KP
Sbjct: 69 LDALRVIMKKYP-VPVIMISALTQEGAEATIKALEYGAIDFIPKP 112
>gb|AAG19394.1| (AE005033) chemotaxis protein; CheB [Halobacterium sp. NRC-1]
Length = 347
Score = 85.0 bits (207), Expect = 2e-16
Identities = 46/106 (43%), Positives = 65/106 (60%), Gaps = 3/106 (2%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M LVVDD+ FMR ++ IL G +VVG A NG A++ ++PD++TMD+ MPEMD
Sbjct: 1 MTEALVVDDSHFMRTVISDILEDGGVDVVGTAENGARALDAVTDVQPDVITMDVEMPEMD 60
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQE--AKVMEALKSGAKGYIVKP 104
GI A EIM+ P I+M++A+ E +EA++ GA KP
Sbjct: 61 GIEATAEIMREQP-TPILMVSALTTEDADATLEAMEKGAIDTFAKP 105
>emb|CAB95289.1| (AL359779) putative two component system response regulator
[Streptomyces coelicolor A3(2)]
Length = 221
Score = 84.7 bits (206), Expect = 3e-16
Identities = 44/121 (36%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 1 MARILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M R+L+ DD + +R + +L Q EVV EA++G+EAV ++L+PD+V MDI MP +
Sbjct: 1 MIRVLLADDQSLVRAGFRALLDAQPDIEVVAEAADGEEAVRSIRELRPDVVLMDIRMPLL 60
Query: 60 DGITAVKEIMKID--PNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
DG+ A + I P+ +++M+T + V EA++SGA G++VK + ++++ V V
Sbjct: 61 DGLAATRRITGDPGLPDVRVVMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAV 120
Query: 118 L 118
+
Sbjct: 121 V 121
>gi|11465824 hypothetical chloroplast ORF 27. [Porphyra purpurea]
>gi|1723330|sp|P51358|YC27_PORPU PROBABLE
TRANSCRIPTIONAL REGULATOR YCF27 (OMPR-LIKE PROTEIN)
>gi|7444021|pir||S73279 ycf27 protein - red alga
(Porphyra purpurea) chloroplast
>gi|1276824|gb|AAC08244.1| (U38804) hypothetical
chloroplast ORF 27. [Porphyra purpurea]
Length = 243
Score = 84.7 bits (206), Expect = 3e-16
Identities = 46/116 (39%), Positives = 76/116 (64%), Gaps = 2/116 (1%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+ILVVDD A +R +L+ LT G+EV+ ASNG+EA+ +++ P LV +D++MP++DG
Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVI-TASNGEEALIIFRKEYPSLVVLDVMMPKLDGY 65
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+E+ K + + IIM+TA+G+ + L+ GA Y+VKPF +++ + VL
Sbjct: 66 GVCQELRK-ESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVL 120
>pir||G83463 probable methyltransferase PA1459 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947411|gb|AAG04848.1|AE004575_7 (AE004575) probable
methyltransferase [Pseudomonas aeruginosa]
Length = 368
Score = 84.7 bits (206), Expect = 3e-16
Identities = 45/106 (42%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
++LVVDD+ F R + +IL+ G +VVG +NG+EA+E+ L+PD++TMD MP MDG
Sbjct: 4 KVLVVDDSGFFRRRVSEILSADGQIQVVGTGTNGREAIEQALALRPDVITMDYEMPLMDG 63
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKV-MEALKSGAKGYIVKPFQ 106
ITAV+ IM+ P ++ + + A+V ++AL +GA Y+ K F+
Sbjct: 64 ITAVRNIMQRCPTPVLMFSSLTHEGARVTLDALDAGAVDYLPKNFE 109
>sp|Q05522|CHEB_BACSU PROTEIN-GLUTAMATE METHYLESTERASE >gi|1075896|pir||A48511
protein-glutamate methylesterase (EC 3.1.1.61) cheB -
Bacillus subtilis >gi|580836|emb|CAA48007.1| (X67806)
CheB [Bacillus subtilis] >gi|2634014|emb|CAB13515.1|
(Z99112) methyl-accepting chemotaxis proteins
(MCP)-glutamate methylesterase and two-component
response regulator-like [Bacillus subtilis]
Length = 357
Score = 84.3 bits (205), Expect = 4e-16
Identities = 45/107 (42%), Positives = 73/107 (68%), Gaps = 4/107 (3%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M R+LVVDD+AFMR ++ LT+ EV+G A NG+EA++K + LKPD++T+D+ MP M
Sbjct: 1 MIRVLVVDDSAFMRKMISDFLTEEKQIEVIGTARNGEEALKKIELLKPDVITLDVEMPVM 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAK--VMEALKSGAKGYIVKP 104
+G V++I++I N +IM+++ ++ K + L+ GA +I KP
Sbjct: 61 NGTDTVRKIIEI-YNLPVIMVSSQTEKGKECTINCLEIGAFDFITKP 106
>pir||F69824 two-component response regulator [YhcY] homolog yhcZ - Bacillus
subtilis >gi|2226141|emb|CAA74433.1| (Y14079)
hypothetical protein [Bacillus subtilis]
>gi|2633256|emb|CAB12761.1| (Z99108) similar to
two-component response regulator [YhcY] [Bacillus
subtilis] >gi|2633268|emb|CAB12772.1| (Z99109) similar
to two-component response regulator [YhcY] [Bacillus
subtilis]
Length = 214
Score = 84.3 bits (205), Expect = 4e-16
Identities = 44/111 (39%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Query: 3 RILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
+I++ DD +R L+ TQ EVVGEA+ G EA+ ++ KPDLV MD+ MPEMDG
Sbjct: 2 KIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDG 61
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIE 112
I A+K+ ++ P+ II++T+ + V+ AL++GAK Y +K + +++++
Sbjct: 62 IQAIKKAIQQFPDTNIIVLTSYSDQEHVIPALQAGAKAYQLKDTEPEELVK 112
>sp|O52262|CHEB_PSEPU PROTEIN-GLUTAMATE METHYLESTERASE >gi|2853601|gb|AAC08065.1|
(AF031898) CheB [Pseudomonas putida]
Length = 374
Score = 84.3 bits (205), Expect = 4e-16
Identities = 46/106 (43%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 3 RILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
++LVVDD+ F R + +IL+ +VVG A+NGKEA+++ LKPD++TMD MP MDG
Sbjct: 4 KVLVVDDSGFFRRRVSEILSADPTIQVVGTATNGKEAIDQALALKPDVITMDYEMPMMDG 63
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKV-MEALKSGAKGYIVKPFQ 106
ITAV+ IM+ P ++ + + A+V ++AL +GA Y+ K F+
Sbjct: 64 ITAVRHIMQRCPTPVLMFSSLTHEGARVTLDALDAGAVDYLPKNFE 109
>gb|AAF67048.1|AF183382_8 (AF183382) methylesterase CheB [Pseudomonas putida]
Length = 374
Score = 84.3 bits (205), Expect = 4e-16
Identities = 46/106 (43%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 3 RILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
++LVVDD+ F R + +IL+ +VVG A+NGKEA+++ LKPD++TMD MP MDG
Sbjct: 4 KVLVVDDSGFFRRRVSEILSADPTIQVVGTATNGKEAIDQALALKPDVITMDYEMPMMDG 63
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKV-MEALKSGAKGYIVKPFQ 106
ITAV+ IM+ P ++ + + A+V ++AL +GA Y+ K F+
Sbjct: 64 ITAVRHIMQRCPTPVLMFSSLTHEGARVTLDALDAGAVDYLPKNFE 109
>dbj|BAB04919.1| (AP001511) two-component response regulator [Bacillus halodurans]
Length = 209
Score = 84.3 bits (205), Expect = 4e-16
Identities = 42/115 (36%), Positives = 73/115 (62%), Gaps = 1/115 (0%)
Query: 1 MARILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M ++++VDD +RM L L TQ+ E+VGEAS+G + V+ ++ KPD+V MD+VM +M
Sbjct: 1 MIKVVLVDDHEMVRMGLSAYLRTQSDIEIVGEASDGHQGVKLVQETKPDVVLMDLVMEKM 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEV 114
DG+ A + IM K+I++T+ + KV +++GA Y++K A+++ +
Sbjct: 61 DGVQATEAIMNTTEGVKVIVLTSYIDDEKVYPVIEAGAFSYLLKTSSAKEIASAI 115
>pir||JC5359 two-component regulator protein YfiK - Bacillus subtilis
>gi|1817535|dbj|BAA11401.1| (D78508) YfiK [Bacillus
subtilis] >gi|2633154|emb|CAB12659.1| (Z99108) similar
to two-component response regulator [YfiJ] [Bacillus
subtilis]
Length = 220
Score = 83.9 bits (204), Expect = 5e-16
Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M +I++ DD +R L +L +V+ A NG+EA EK K+L+PD+V MDI MP
Sbjct: 1 MIKIIITDDQDIVREGLASLLQLREELDVIATARNGQEAFEKAKELEPDIVLMDIRMPVS 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
+G+ K I P+ K++M+T A + EAL+ GA GY++K A +++ V V S
Sbjct: 61 NGVEGTKLITSSLPSVKVLMLTTFKDSALIAEALEEGASGYLLKDMSADTIVKAVMTVHS 120
>sp|O58192|CHEB_PYRHO PROTEIN-GLUTAMATE METHYLESTERASE >gi|7435070|pir||F71160
hypothetical protein PH0483 - Pyrococcus horikoshii
>gi|3256888|dbj|BAA29571.1| (AP000002) 368aa long
hypothetical protein-glutamate methylesterase
[Pyrococcus horikoshii]
Length = 368
Score = 83.9 bits (204), Expect = 5e-16
Identities = 48/105 (45%), Positives = 72/105 (67%), Gaps = 4/105 (3%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
++LVVDD+AFMR +LK I+ EV GEA +G EA+E ++ +PD+VT+D+ MP M+G
Sbjct: 9 KVLVVDDSAFMRKVLKDIINSDPELEVCGEARDGIEAIEMVQKCRPDVVTLDVEMPRMNG 68
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEA--KVMEALKSGAKGYIVKP 104
+ A++ IMK P +IMI+A+ QE ++AL+ GA +I KP
Sbjct: 69 LDALRVIMKRYP-VPVIMISALTQEGADATIKALEYGAIDFIPKP 112
>pir||T35501 probable two-component system regulator - Streptomyces coelicolor
>gi|5689930|emb|CAB51968.1| (AL109661) putative
two-component system regulator [Streptomyces coelicolor
A3(2)]
Length = 215
Score = 83.1 bits (202), Expect = 9e-16
Identities = 38/112 (33%), Positives = 70/112 (61%)
Query: 5 LVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGITA 64
+VVDD R + + L ++G +VV AS+G +AV + + PD++ +D+ +P G+
Sbjct: 1 MVVDDHPMWRDAVARDLAESGFDVVATASDGDQAVRRARAAAPDVLVLDLNLPGRPGVQV 60
Query: 65 VKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNR 116
KE + DP ++++++A G+ A V+EA+KSGA GY++K +++ + V R
Sbjct: 61 CKEAVGTDPKLRVLVLSASGEHADVLEAVKSGATGYLLKSASTEELRDAVRR 112
>gb|AAD30119.2| (AF135388) DNA binding response regulator RpaB [Tolypothrix
PCC7601]
Length = 233
Score = 83.1 bits (202), Expect = 9e-16
Identities = 43/113 (38%), Positives = 74/113 (65%), Gaps = 2/113 (1%)
Query: 6 VVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGITAV 65
+VDD A +R +L+ L+ G++VV A +G+EA+E +++ PDLV +D++MP++DG
Sbjct: 1 MVDDEASIRRILETRLSMIGYDVV-TAGDGEEALETFRKADPDLVVLDVMMPKLDGYGVC 59
Query: 66 KEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+E+ K + + IIM+TA+G A + L+ GA Y+VKPF +++ + VL
Sbjct: 60 QELRK-ESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVL 111
>emb|CAB59507.1| (AL132648) putative two-component response regulator [Streptomyces
coelicolor A3(2)]
Length = 223
Score = 82.7 bits (201), Expect = 1e-15
Identities = 44/118 (37%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Query: 3 RILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+L+VDD +R + IL + VVGEA +G +A+++ + L+PD+V MDI MP MDG
Sbjct: 4 RVLLVDDQPLLRTGFRMILEAEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIRMPRMDG 63
Query: 62 ITAVKEIM--KIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
+ A ++I + D AK++++T + V+EALK+GA G+++K A ++++ + V
Sbjct: 64 VEATRQITGPERDGPAKVLVLTTFDLDEYVVEALKAGASGFLLKDAPANELVQAIRVV 121
>pir||C81104 transcription regulator, LuxR family NMB1250 [imported] - Neisseria
meningitidis (group B strain MD58, group A strain Z2491)
>gi|7226490|gb|AAF41630.1| (AE002473) transcriptional
regulator, LuxR family [Neisseria meningitidis MC58]
>gi|7380078|emb|CAB84659.1| (AL162755) putative
two-component system response regulator [Neisseria
meningitidis Z2491]
Length = 218
Score = 82.3 bits (200), Expect = 2e-15
Identities = 38/115 (33%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
Query: 3 RILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
+I+++DD R +K +L+ Q G EV+GEA++G ++ +L+PD+V +D+ MP M+G
Sbjct: 4 KIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRLQPDVVLLDLDMPGMNG 63
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNR 116
A+ +I+ I+P +IM+T + E ++ GA+GY++K A ++E + +
Sbjct: 64 REALSQIISINPQQAVIMLTVSEDSDDLTECMRIGARGYLLKNINADFLLESIRK 118
>dbj|BAB05816.1| (AP001514) two-component response regulator [Bacillus halodurans]
Length = 210
Score = 82.3 bits (200), Expect = 2e-15
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M ++L+ +D +R LK ++ T V GEA+NGKEA+ + + D+ +DI MPEM
Sbjct: 1 MIKVLLAEDQVMVRQGLKVMIETDEDIFVTGEATNGKEAIRLCESQRFDVAVLDIRMPEM 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
DGI A K + P KI+M+T VMEALK G GY++K + +I + L+
Sbjct: 61 DGIEAAKVLRSRFPEMKILMLTTFDDHQYVMEALKLGVSGYMLKDGDTESLIRSIKSALN 120
>pir||T35199 probable two-component regulator - Streptomyces coelicolor
>gi|3036890|emb|CAA18523.1| (AL022374) SC5B8.15,
probable two-component transcriptional reg ulator, len:
229 aa; similar to many e.g. DEGU_BACSU P13800
transcriptional regulator (229 aa), fasta scores; opt:
485 z-score: 582.9 E(): 2.8e-25, 37.1% identity in 221
aa over lap. Conta>
Length = 229
Score = 82.3 bits (200), Expect = 2e-15
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 2 ARILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
AR++VVDD +R + +L G +VVG A +G+EAV +L PD+V MD+ MP D
Sbjct: 10 ARVVVVDDQTVVREGIVMLLGLLPGVDVVGAAGDGEEAVRVVAELAPDVVLMDLRMPRCD 69
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A + I P +++++T + + AL +GA+GY+ K +++ V+ VLS
Sbjct: 70 GVEATRRIRSEHPGTQVVVLTTYADDESLFPALHAGARGYLTKDAGGDEIVRAVHSVLS 128
>dbj|BAA88407.1| (AB016841) chiR [Streptomyces thermoviolaceus]
Length = 213
Score = 82.3 bits (200), Expect = 2e-15
Identities = 45/118 (38%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M R+LV +D + +R L IL A G EV GEA +G+ AV+ + L+PD+V MD+ MP +
Sbjct: 1 MIRVLVAEDQSAVRAGLVLILRSAPGIEVAGEAEDGQRAVDLARDLRPDVVLMDVRMPRL 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
DG++A ++I+ + A ++++T +A V AL++GA G+++K +A +I+ V V
Sbjct: 61 DGVSATRQIV-AEQLADVLVLTTFDFDAYVFGALRAGAAGFLLKSAEADDLIDAVRTV 117
>sp|P13800|DEGU_BACSU TRANSCRIPTIONAL REGULATORY PROTEIN DEGU (PROTEASE PRODUCTION
ENHANCER PROTEIN) >gi|72614|pir||RGBSXD extracellular
proteinase response regulator degU - Bacillus subtilis
>gi|143089|gb|AAA22545.1| (M21658) iep protein [Bacillus
subtilis] >gi|143499|gb|AAA22733.1| (M23558) degU
protein (gtg start codon) [Bacillus subtilis]
>gi|143502|gb|AAA22735.1| (M23649) protein kinase
(put.); putative [Bacillus subtilis]
>gi|1762330|gb|AAC44938.1| (U56901) transcriptional
regulator of degradation enzymes [Bacillus subtilis]
>gi|2636075|emb|CAB15566.1| (Z99122) two-component
response regulator [Bacillus subtilis]
Length = 229
Score = 81.9 bits (199), Expect = 2e-15
Identities = 43/115 (37%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 4 ILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
I+++DD R +K+IL + EVV E +G EA + PD+V MDI MP ++G+
Sbjct: 6 IVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGV 65
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
A K+++++ P +K+I+++ E V ALK+GA+GY++K A +IE V V
Sbjct: 66 EATKQLVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVV 120
>sp|Q06065|ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY PROTEIN ATOC (ORNITHINE/ARGININE
DECARBOXYLASE INHIBITOR) (ORNITHINE DECARBOXYLASE
ANTIZYME) >gi|7444090|pir||B64992 acetoacetate
metabolism regulatory protein atoC - Escherichia coli
>gi|619917|gb|AAA60332.1| (U17902) NtrC/NifA-like
protein regulator [Escherichia coli]
>gi|1736875|dbj|BAA16016.1| (D90851) Acetoacetate
metabolism regulatory protein AtoC (Ornithine / Arginine
decarboxylase inhibitor) (Ornithine decarboxylase
antizyme). [Escherichia coli] >gi|1788550|gb|AAC75280.1|
(AE000311) response regulator of ato, ornithine
decarboxylase antizyme (sensor ATOS) [Escherichia coli
K12]
Length = 461
Score = 81.9 bits (199), Expect = 2e-15
Identities = 45/116 (38%), Positives = 67/116 (56%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
RIL+VDD +R +L G E A+NG+ A+ + + PD+V MDI MPEMDGI
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHC-ANNGRTALHLFADIHPDVVLMDIRMPEMDGI 64
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
A+KE+ + +I++TA + +EAL+ GA Y++KPF ++ V R L
Sbjct: 65 KALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRAL 120
>pir||E70045 two-component response regulator [YvqE] homolog yvqC - Bacillus
subtilis >gi|2635805|emb|CAB15298.1| (Z99120) similar to
two-component response regulator [YvqE] [Bacillus
subtilis] >gi|2832821|emb|CAA11745.1| (AJ223978) YvqC
protein [Bacillus subtilis]
Length = 211
Score = 81.9 bits (199), Expect = 2e-15
Identities = 44/115 (38%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Query: 1 MARILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M R+L++DD +RM L L Q EV+GEAS+G E V +L PD++ MD+VM M
Sbjct: 1 MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGM 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEV 114
DGI A K+I + + KII++T+ + KV +++GA Y++K +A ++ + +
Sbjct: 61 DGIEATKQICRELSDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAI 115
>pir||S76149 sensory transduction system regulatory protein slr0947 -
Synechocystis sp. (strain PCC 6803)
>gi|1653495|dbj|BAA18408.1| (D90914) regulatory
components of sensory transduction system [Synechocystis
sp.]
Length = 234
Score = 81.5 bits (198), Expect = 3e-15
Identities = 43/113 (38%), Positives = 73/113 (64%), Gaps = 2/113 (1%)
Query: 6 VVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGITAV 65
+VDD A +R +L+ L+ G+EVV A++G+EA+ + + PDLV +D++MP++DG
Sbjct: 1 MVDDEASIRRILETRLSMIGYEVV-TAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVC 59
Query: 66 KEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+E+ K + + IIM+TA+G A + L+ GA Y+VKPF +++ + VL
Sbjct: 60 QELRK-ESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVL 111
>pir||G69780 two-component response regulator [YdfH] homolog ydfI - Bacillus
subtilis >gi|1881349|dbj|BAA19376.1| (AB001488) PROBABLE
REGULATORY COMPONENT OF SENSORY TRANSDUCTION SYSTEM.
[Bacillus subtilis] >gi|2632842|emb|CAB12349.1| (Z99106)
similar to two-component response regulator [YdfH]
[Bacillus subtilis]
Length = 213
Score = 81.5 bits (198), Expect = 3e-15
Identities = 41/119 (34%), Positives = 75/119 (62%), Gaps = 2/119 (1%)
Query: 1 MARILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M ++L+VDD +R LK ++ T + ++GEA NGK AV +L+PD++ MD+ MPEM
Sbjct: 1 MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEM 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G+ A+K+I K + II++T ++ ++E ++ GAKGY++K ++ + ++ +
Sbjct: 61 SGLEAIKQI-KEKHDTPIIILTTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAI 118
>pir||T36530 probable two-component system regulator - Streptomyces coelicolor
>gi|4753864|emb|CAB42027.1| (AL049754) putative
two-component system regulator [Streptomyces coelicolor
A3(2)]
Length = 228
Score = 81.5 bits (198), Expect = 3e-15
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+L+ DD +R +L TQ EV+G+A +G +AV K +L P++V MDI MPE+ G
Sbjct: 11 RVLIADDQQMVRQGFTVLLNTQPDIEVIGQAVDGLDAVAKVAELAPEVVLMDIRMPELGG 70
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
I A + I P +++++T + V EAL++GA G+++K A ++ E V V
Sbjct: 71 IEATRRITTATPEIRVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVV 126
>sp|P71129|CHEY_CAMJE CHEMOTAXIS PROTEIN CHEY HOMOLOG >gi|11277555|pir||A81316 chemotaxis
regulatory protein Cj1118c [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|1644429|gb|AAB17571.1|
(U75208) response regulator protein [Campylobacter
jejuni] >gi|3413457|emb|CAA72347.1| (Y11648) cheY
[Campylobacter jejuni] >gi|6968552|emb|CAB73373.1|
(AL139077) chemotaxis regulatory protein [Campylobacter
jejuni]
Length = 130
Score = 81.1 bits (197), Expect = 3e-15
Identities = 50/123 (40%), Positives = 78/123 (62%), Gaps = 7/123 (5%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEA---VEKYKQLKPDLVTMDIVMPEM 59
++LVVDD++ MR ++K LT+ GH+ V EA +G EA + K + +K ++ D MPEM
Sbjct: 2 KLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNEDVK--VLITDWNMPEM 59
Query: 60 DGITAVKEIM--KIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
+G+ VK++ K + IIM+T G +A+V+ ALK+G YIVKPF Q + E++ V
Sbjct: 60 NGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEDV 119
Query: 118 LSS 120
L +
Sbjct: 120 LGT 122
>sp|P95582|GACA_PSEVI RESPONSE REGULATOR GACA (GLOBAL ACTIVATOR)
>gi|1743428|gb|AAB38979.1| (L30102) RepB [Pseudomonas
viridiflava]
Length = 214
Score = 81.1 bits (197), Expect = 3e-15
Identities = 38/120 (31%), Positives = 76/120 (62%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M R+LVVDD +R + ++L G +VVG+A +G+E+++K ++LKPD+V MD+ MP +
Sbjct: 1 MIRVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKARELKPDVVLMDVKMPGI 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A +++++ P+ K++ +T ++ L++GA GY+ K ++++ + V +
Sbjct: 61 GGLEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQAGAAGYMTKGAGLAEMVQAIRLVFA 120
>dbj|BAB07506.1| (AP001520) two-component response regulator [Bacillus halodurans]
Length = 120
Score = 81.1 bits (197), Expect = 3e-15
Identities = 44/119 (36%), Positives = 78/119 (64%), Gaps = 5/119 (4%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M +ILVVDD +R+LL +IL + G+++ +A+NG +A+ ++ PDLV +D+ +P MD
Sbjct: 1 MNKILVVDDQYGIRVLLNEILQKDGYQMF-QAANGIQALAIVEEETPDLVLLDMKIPGMD 59
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ ++ I ++PN ++IM+TA G+ + EA++ GA + KPF I++V V++
Sbjct: 60 GLEILRRIKDMNPNIEVIMMTAYGELNMINEAMQLGAVTHFAKPFD----IDDVRAVIA 114
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis >gi|2098286|pdb|1SRR|C Chain C, Crystal
Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis >gi|2098285|pdb|1SRR|B Chain B, Crystal
Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
Length = 124
Score = 80.8 bits (196), Expect = 4e-15
Identities = 39/116 (33%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+IL+VDD + +R+LL ++ + G++ +A+NG +A++ + +PDLV +D+ +P MDGI
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTF-QAANGLQALDIVTKERPDLVLLDMKIPGMDGI 63
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+K + ID N ++I++TA G+ + E+ + GA + KPF ++ + V + L
Sbjct: 64 EILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
>gi|11498668 response regulator [Archaeoglobus fulgidus] >gi|7443025|pir||G69382
response regulator homolog - Archaeoglobus fulgidus
>gi|2649524|gb|AAB90176.1| (AE001029) response regulator
[Archaeoglobus fulgidus]
Length = 134
Score = 80.8 bits (196), Expect = 4e-15
Identities = 49/119 (41%), Positives = 73/119 (61%), Gaps = 4/119 (3%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M +ILVVDD + L K+IL G V A +G+E +E Y++L PDLV +DI MP++
Sbjct: 17 MTKILVVDDDCSICELYKEIL---GSFEVVSACSGREGLELYRKLMPDLVIVDINMPDIS 73
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ KEI K++P A +I++TA QE + + L+ GAK + KPF + E V + L+
Sbjct: 74 GVEVAKEIFKLNPEAVVIVVTAYYQEFE-SKMLRLGAKEVLGKPFNLKHFRECVAKYLN 131
>pir||G82805 two-component system, regulatory protein XF0450 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105294|gb|AAF83260.1|AE003895_11 (AE003895)
two-component system, regulatory protein [Xylella
fastidiosa]
Length = 132
Score = 80.8 bits (196), Expect = 4e-15
Identities = 39/121 (32%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
MAR+L+V+D+ + +++I+ + GHE + A++G VE K PDLV MD+VMP+++
Sbjct: 5 MARVLIVEDSPSQLLSIQRIVEKLGHETI-TATDGNTGVEAAKAHLPDLVLMDVVMPKIN 63
Query: 61 GITAVKEIMK--IDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G A + + + + +I++T Q+ + ++ GA+ YI KPF +++E + R+
Sbjct: 64 GFQATRTLKREPATQHVPVILVTTKDQDTDRLWGIRQGARAYITKPFSESELLEVMERIF 123
Query: 119 S 119
S
Sbjct: 124 S 124
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction >gi|10120795|pdb|1F51|F Chain F, A
Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction >gi|10120796|pdb|1F51|G Chain G, A
Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction >gi|10120797|pdb|1F51|H Chain H, A
Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 80.8 bits (196), Expect = 4e-15
Identities = 39/116 (33%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+IL+VDD + +R+LL ++ + G++ +A+NG +A++ + +PDLV +D+ +P MDGI
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTF-QAANGLQALDIVTKERPDLVLLDMKIPGMDGI 61
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+K + ID N ++I++TA G+ + E+ + GA + KPF ++ + V + L
Sbjct: 62 EILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 117
>sp|P35163|RESD_BACSU TRANSCRIPTIONAL REGULATORY PROTEIN RESD >gi|629124|pir||S45559
hypothetical protein X17 - Bacillus subtilis
>gi|7429073|pir||G69691 two-component response regulator
involved in aerobic and anaer resD - Bacillus subtilis
>gi|410141|gb|AAA67497.1| (L09228) ORFX17 [Bacillus
subtilis] >gi|2634747|emb|CAB14244.1| (Z99116)
two-component response regulator [Bacillus subtilis]
Length = 240
Score = 80.4 bits (195), Expect = 6e-15
Identities = 45/116 (38%), Positives = 70/116 (59%), Gaps = 2/116 (1%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+ILVVDD A +R LL+ L + + + EA NG EA+ K + DL+ +D++MP DGI
Sbjct: 8 KILVVDDEARIRRLLRMYLERENY-AIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGI 66
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
++I + IIM+TA G+EA ++ ++G YIVKPF ++V+ V +L
Sbjct: 67 EVCRQIRE-KKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALL 121
>gb|AAA98759.1| (L29642) response regulator/transcription activator [Pseudomonas
fluorescens]
Length = 213
Score = 80.4 bits (195), Expect = 6e-15
Identities = 38/120 (31%), Positives = 75/120 (61%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M R+LVVDD +R + ++L G +VVG+A +G+E++ K ++LKPD+V MD+ MP +
Sbjct: 1 MIRVLVVDDHDLVRTGITRMLADIDGLQVVGQAESGEESLLKARELKPDVVLMDVKMPGI 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A +++++ P+ K++ +T ++ L++GA GY+ K ++++ + V +
Sbjct: 61 GGLEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQAGAAGYLTKGAGLNEMVQAIRLVFA 120
>sp|P52940|SP0A_CLOPA STAGE 0 SPORULATION PROTEIN A HOMOLOG >gi|497971|gb|AAA18883.1|
(U09982) Spo0A [Clostridium pasteurianum]
Length = 273
Score = 80.4 bits (195), Expect = 6e-15
Identities = 42/120 (35%), Positives = 73/120 (60%), Gaps = 3/120 (2%)
Query: 4 ILVVDD-AAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+L+ DD F +L +L Q+ VVG A +G EA++ ++ KPDLV +DI+MP MDG+
Sbjct: 8 VLIADDNKEFCNILNDYLLNQSDIVVVGIAKDGIEALKLIEEKKPDLVILDIIMPNMDGL 67
Query: 63 TAVKEI--MKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
++++ + IDP +I+++AVGQ+ A+ GA Y+VKPF + + ++ ++
Sbjct: 68 VVLEKLANINIDPVPNVIVLSAVGQDKITQRAITLGADYYVVKPFDMDVFTKRIRQMFNN 127
>sp|P55184|YXJL_BACSU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN GALE-PEPT INTERGENIC
REGION >gi|1429258|emb|CAA67717.1| (X99339) orf4;
putative [Bacillus subtilis]
Length = 218
Score = 80.4 bits (195), Expect = 6e-15
Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 3 RILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+ + DD +R + ++ Q V GEA +G + + KQ KPD++ MD+ MP G
Sbjct: 7 RVALADDQPLVREAFRYVINAQTDMTVSGEAGDGHDIIALAKQTKPDVILMDVQMPRCSG 66
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEV 114
I A K+IM PN KI+++T E V E +++GA GY++K +++I+ +
Sbjct: 67 IEAAKDIMSALPNTKIVILTTFDTEEYVFEGIRAGAVGYLLKDTLPEELIDAI 119
>emb|CAA57487.1| (X81897) cheY [Helicobacter pylori]
Length = 140
Score = 80.4 bits (195), Expect = 6e-15
Identities = 51/122 (41%), Positives = 76/122 (61%), Gaps = 5/122 (4%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYK-QLKPDLVTMDIVMPEMDG 61
++LVVDD++ MR ++K L++ G+E V EA +G EA EK ++ D MPEM+G
Sbjct: 18 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 77
Query: 62 ITAVKEIMKIDPNAK---IIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+ VK++ + D K IIMIT G +A+V+ ALK+G YIVKPF Q + E++ VL
Sbjct: 78 LDLVKKV-RSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 136
Query: 119 SS 120
+
Sbjct: 137 GA 138
>pir||S60880 phosphorylation-activated transcription factor Spo0A - Clostridium
pasteurianum
Length = 274
Score = 80.4 bits (195), Expect = 6e-15
Identities = 42/120 (35%), Positives = 73/120 (60%), Gaps = 3/120 (2%)
Query: 4 ILVVDD-AAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+L+ DD F +L +L Q+ VVG A +G EA++ ++ KPDLV +DI+MP MDG+
Sbjct: 8 VLIADDNKEFCNILNDYLLNQSDIVVVGIAKDGIEALKLIEEKKPDLVILDIIMPNMDGL 67
Query: 63 TAVKEI--MKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
++++ + IDP +I+++AVGQ+ A+ GA Y+VKPF + + ++ ++
Sbjct: 68 VVLEKLANINIDPVPNVIVLSAVGQDKITQRAITLGADYYVVKPFDMDVFTKRIRQMFNN 127
>pir||S60871 phosphorylation-activated transcription factor Spo0A - Bacillus
circulans (fragment)
Length = 211
Score = 80.4 bits (195), Expect = 6e-15
Identities = 40/117 (34%), Positives = 75/117 (63%), Gaps = 2/117 (1%)
Query: 3 RILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
++ +VDD + LL++ + Q EV+G A NG+E +E +QL+PD++ +DI+MP +DG
Sbjct: 5 KVCIVDDNRELVGLLEEYIDAQDDMEVIGVAHNGQECLELVEQLEPDVMVLDIIMPHIDG 64
Query: 62 ITAVKEIMKID-PNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
+ ++ + +++ P +IM+TA GQE +A++ GA +I+KPF + + + +V
Sbjct: 65 LAVLERMRQMNKPMPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMEYLASHIRQV 121
>gb|AAB66375.1| (U97567) chemotaxis response regulator [Helicobacter pylori]
Length = 124
Score = 80.4 bits (195), Expect = 6e-15
Identities = 51/122 (41%), Positives = 76/122 (61%), Gaps = 5/122 (4%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYK-QLKPDLVTMDIVMPEMDG 61
++LVVDD++ MR ++K L++ G+E V EA +G EA EK ++ D MPEM+G
Sbjct: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 61
Query: 62 ITAVKEIMKIDPNAK---IIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+ VK++ + D K IIMIT G +A+V+ ALK+G YIVKPF Q + E++ VL
Sbjct: 62 LDLVKKV-RSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
Query: 119 SS 120
+
Sbjct: 121 GA 122
>sp|P71403|CHEY_HELPY CHEMOTAXIS PROTEIN CHEY HOMOLOG >gi|7443006|pir||C64653 chemotaxis
protein - Helicobacter pylori (strain 26695)
>gi|2314217|gb|AAD08113.1| (AE000614) chemotaxis protein
(cheY) [Helicobacter pylori 26695]
>gi|4103138|gb|AAD01682.1| (AF021090) CheY [Helicobacter
pylori]
Length = 124
Score = 80.4 bits (195), Expect = 6e-15
Identities = 51/122 (41%), Positives = 76/122 (61%), Gaps = 5/122 (4%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYK-QLKPDLVTMDIVMPEMDG 61
++LVVDD++ MR ++K L++ G+E V EA +G EA EK ++ D MPEM+G
Sbjct: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 61
Query: 62 ITAVKEIMKIDPNAK---IIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+ VK++ + D K IIMIT G +A+V+ ALK+G YIVKPF Q + E++ VL
Sbjct: 62 LDLVKKV-RSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
Query: 119 SS 120
+
Sbjct: 121 GT 122
>gb|AAD03502.1| (AF065156) response regulator [Pseudomonas fluorescens]
Length = 213
Score = 80.4 bits (195), Expect = 6e-15
Identities = 38/120 (31%), Positives = 75/120 (61%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M R+LVVDD +R + ++L G +VVG+A +G+E++ K ++LKPD+V MD+ MP +
Sbjct: 1 MIRVLVVDDHDLVRTGITRMLADIDGLQVVGQAESGEESLLKARELKPDVVLMDVKMPGI 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A +++++ P+ K++ +T ++ L++GA GY+ K ++++ + V +
Sbjct: 61 GGLEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQAGAAGYLTKGAGLNEMVQAIRLVFA 120
>pir||F71941 response regulator - Helicobacter pylori (strain J99)
>gi|4154896|gb|AAD05946.1| (AE001471) response regulator
[Helicobacter pylori J99]
Length = 124
Score = 80.4 bits (195), Expect = 6e-15
Identities = 51/122 (41%), Positives = 76/122 (61%), Gaps = 5/122 (4%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYK-QLKPDLVTMDIVMPEMDG 61
++LVVDD++ MR ++K L++ G+E V EA +G EA EK ++ D MPEM+G
Sbjct: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 61
Query: 62 ITAVKEIMKIDPNAK---IIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+ VK++ + D K IIMIT G +A+V+ ALK+G YIVKPF Q + E++ VL
Sbjct: 62 LDLVKKV-RADNRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
Query: 119 SS 120
+
Sbjct: 121 GT 122
>sp|P52931|SP0A_BACCI STAGE 0 SPORULATION PROTEIN A >gi|497953|gb|AAA18874.1| (U09973)
Spo0A [Bacillus circulans subsp. circulans]
Length = 210
Score = 80.4 bits (195), Expect = 6e-15
Identities = 40/117 (34%), Positives = 75/117 (63%), Gaps = 2/117 (1%)
Query: 3 RILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
++ +VDD + LL++ + Q EV+G A NG+E +E +QL+PD++ +DI+MP +DG
Sbjct: 5 KVCIVDDNRELVGLLEEYIDAQDDMEVIGVAHNGQECLELVEQLEPDVMVLDIIMPHIDG 64
Query: 62 ITAVKEIMKID-PNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
+ ++ + +++ P +IM+TA GQE +A++ GA +I+KPF + + + +V
Sbjct: 65 LAVLERMRQMNKPMPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMEYLASHIRQV 121
>pir||T44264 sensory transduction system regulatory protein cheY [imported] -
Synechococcus sp. (strain PCC 7942)
>gi|4156225|dbj|BAA37098.1| (AB010691) similar to
sir1042 protein of Synechocystis sp. strain PCC 6803
[Synechococcus sp.]
Length = 125
Score = 80.4 bits (195), Expect = 6e-15
Identities = 45/122 (36%), Positives = 72/122 (58%), Gaps = 3/122 (2%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
MA ILVVDD++ L ++ L GH+V A+NG+EA++ KPDL+ +DIVMPEM+
Sbjct: 1 MANILVVDDSSLYLELARQALVDHGHQVE-LANNGQEALQSVANKKPDLILLDIVMPEMN 59
Query: 61 GITAVKEIMKIDPNAKI--IMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G ++ + K NA I I+ + G++ LK GA Y+ KP++ +++ V L
Sbjct: 60 GYDVLRSLKKSAENATIPVILCSTKGEDFDKYWGLKQGANAYLTKPYEPTELLLLVQEQL 119
Query: 119 SS 120
++
Sbjct: 120 TA 121
>gb|AAD27580.1|AF115381_1 (AF115381) response regulator GacA [Pseudomonas aureofaciens]
Length = 213
Score = 80.4 bits (195), Expect = 6e-15
Identities = 38/120 (31%), Positives = 75/120 (61%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M R+LVVDD +R + ++L G +VVG+A +G+E++ K ++LKPD+V MD+ MP +
Sbjct: 1 MIRVLVVDDHDLVRTGITRMLADIDGLQVVGQAESGEESLIKARELKPDVVLMDVKMPGI 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A +++++ P+ K++ +T ++ L++GA GY+ K ++++ + V +
Sbjct: 61 GGLEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQAGAAGYLTKGAGLNEMVQAIRLVFA 120
>dbj|BAB05983.1| (AP001514) two-component response regulator [Bacillus halodurans]
Length = 231
Score = 80.4 bits (195), Expect = 6e-15
Identities = 40/116 (34%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
R+LVVDD M++L+ +++AG+ +V A++G A+++ K DLV +DI++P++DG
Sbjct: 4 RVLVVDDEKKMQVLITVCVSEAGY-LVQTAASGLAAMDRLKAEPFDLVLLDIMLPDVDGF 62
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+ + ++ + + IIM+TA+G+ ++ L GA YIVKPF+ ++ + VL
Sbjct: 63 SLIAQLRHLQEDVAIIMLTALGETEHIVRGLNEGADDYIVKPFEPDELNARILSVL 118
>sp|P54662|DEGU_BACBR TRANSCRIPTIONAL REGULATORY PROTEIN DEGU >gi|2119837|pir||I39835
transcription activator - Bacillus brevis
>gi|710496|gb|AAC41439.1| (L15444) transcriptional
activator protein [Brevibacillus brevis]
Length = 236
Score = 80.0 bits (194), Expect = 8e-15
Identities = 39/116 (33%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
+I+++DD R +K+IL + EVV + +G+ AVE ++ PD++ MDI MP+++G
Sbjct: 11 QIVIIDDHQLFREGVKRILAMEPEFEVVADGEDGENAVELVEKYNPDVILMDINMPKVNG 70
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
+ A +++++ P+ K+++++ E+ V LK+GA GY++K A +IE V V
Sbjct: 71 VEATRDLIQRYPDVKVLVLSIHDDESYVTHVLKTGASGYLLKEMDADALIEAVKVV 126
>gb|AAA62132.2| (U01831) orf246; ompR homolog [Rhodella violacea]
Length = 247
Score = 80.0 bits (194), Expect = 8e-15
Identities = 44/115 (38%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
IL+VDD A MR LL+ L+ G+ V+ AS+G+EA+ +++ P+L+ +DI+MP++DG
Sbjct: 13 ILIVDDEASMRRLLEYRLSIIGYNVIS-ASDGEEALNIFRKEHPNLIVLDIMMPKLDGFG 71
Query: 64 AVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+EI K + + IIM+T +G + L+ GA Y+VKPF +++ + VL
Sbjct: 72 VCQEIRK-ESDIPIIMLTGLGDIVDRITGLELGADDYLVKPFSPKELEARIKSVL 125
>sp|P06628|SP0F_BACSU SPORULATION INITIATION PHOSPHOTRANSFERASE F (STAGE 0 SPORULATION
PROTEIN F) >gi|72608|pir||SZBS0F stage 0 sporulation
protein spo0F - Bacillus subtilis >gi|2781079|pdb|1FSP|
Nmr Solution Structure Of Bacillus Subtilis Spo0f
Protein, 20 Structures >gi|2781085|pdb|2FSP| Nmr
Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure >gi|3891866|pdb|1NAT|
Crystal Structure Of Spoof From Bacillus Subtilis
>gi|40157|emb|CAA27217.1| (X03497) spoOF protein (aa
1-124) [Bacillus subtilis] >gi|143598|gb|AAA16802.1|
(M22039) spo0F [Bacillus subtilis]
>gi|143601|gb|AAA22787.1| (M11081) Spo0F protein
[Bacillus subtilis] >gi|853764|emb|CAA89872.1| (Z49782)
protein that belongs to the receiver class of
two-component regulatory systems [Bacillus subtilis]
>gi|2636238|emb|CAB15730.1| (Z99122) two-component
response regulator [Bacillus subtilis]
>gi|2636250|emb|CAB15741.1| (Z99123) two-component
response regulator [Bacillus subtilis]
Length = 124
Score = 79.6 bits (193), Expect = 1e-14
Identities = 39/116 (33%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+IL+VDD +R+LL ++ + G++ +A+NG +A++ + +PDLV +D+ +P MDGI
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTF-QAANGLQALDIVTKERPDLVLLDMKIPGMDGI 63
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+K + ID N ++I++TA G+ + E+ + GA + KPF ++ + V + L
Sbjct: 64 EILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
>sp|Q52376|GACA_PSESY RESPONSE REGULATOR GACA (GLOBAL ACTIVATOR) >gi|1073073|pir||A55538
cognate response regulator gacA - Pseudomonas syringae
pv. syringae (strain B728a)
Length = 214
Score = 79.6 bits (193), Expect = 1e-14
Identities = 37/120 (30%), Positives = 76/120 (62%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M ++LVVDD +R + ++L G +VVG+A +G+E+++K ++LKPD+V MD+ MP +
Sbjct: 1 MIKVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKARELKPDVVLMDVKMPGI 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A +++++ P+ K++ +T ++ L++GA GY+ K ++++ + V +
Sbjct: 61 GGLEATRKMLRSHPDIKVVAVTVCEEDPFPTRLLQAGAAGYMTKGAGLAEMVQAIRLVFA 120
>sp|P28835|YC27_PORAE PROBABLE TRANSCRIPTIONAL REGULATOR YCF27 (OMPR-LIKE PROTEIN)
>gi|81162|pir||S20860 regulatory protein ompR - red alga
(Porphyridium aerugineum) chloroplast
>gi|14153|emb|CAA44464.1| (X62579) regulatory protein
[Porphyridium aerugineum]
Length = 240
Score = 79.2 bits (192), Expect = 1e-14
Identities = 42/116 (36%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+ILV+DD A +R +L+ L+ G++V+ A++G+EA+ +K+ P+LV +D++MP++DG
Sbjct: 5 KILVIDDEASIRRILETRLSIIGYDVIS-AADGEEALSIFKREHPNLVVLDLMMPKLDGY 63
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+E+ K + + IIM+TA+ + + L+ GA YIVKPF +++ + VL
Sbjct: 64 GVCQELRK-ESDVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVL 118
>pir||A70080 two-component response regulator [YxjM] homolog yxjL - Bacillus
subtilis >gi|1783236|dbj|BAA11713.1| (D83026) homologous
to many transcriptional activator proteins; hypothetical
[Bacillus subtilis] >gi|2636426|emb|CAB15917.1| (Z99123)
similar to two-component response regulator [YxjM]
[Bacillus subtilis]
Length = 218
Score = 79.2 bits (192), Expect = 1e-14
Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 3 RILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+ + DD +R + ++ Q V GEA +G + + KQ KPD++ MD+ MP G
Sbjct: 7 RVALADDQPLVREGFRYVINAQTDMTVSGEAGDGHDIIALAKQTKPDVILMDVQMPRCSG 66
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEV 114
I A K+IM PN KI+++T E V E +++GA GY++K +++I+ +
Sbjct: 67 IEAAKDIMSALPNTKIVILTTFDTEEYVFEGIRAGAVGYLLKDTLPEELIDAI 119
>pir||T36543 probable two-component system regulator - Streptomyces coelicolor
>gi|4753877|emb|CAB42040.1| (AL049754) putative
two-component system regulator [Streptomyces coelicolor
A3(2)]
Length = 248
Score = 79.2 bits (192), Expect = 1e-14
Identities = 47/118 (39%), Positives = 72/118 (60%), Gaps = 3/118 (2%)
Query: 3 RILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+LVVDD +R L +L A G EVVGEAS+G EAV + +PD+V MDI MP + G
Sbjct: 20 RLLVVDDQYLVRTGLATLLRAAPGMEVVGEASDGAEAVVLAARTRPDVVLMDIRMPGLTG 79
Query: 62 ITAVKEIM--KIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
I A + I+ +DP +I+++T + V AL++GA G+++K ++++ V V
Sbjct: 80 IQATERILAQAVDPAPRILVLTTFDLDEYVYGALRAGASGFLLKDAGPERLLAAVTAV 137
>emb|CAB65451.1| (AJ012051) VicR protein [Streptococcus pyogenes]
Length = 239
Score = 79.2 bits (192), Expect = 1e-14
Identities = 42/114 (36%), Positives = 73/114 (63%), Gaps = 2/114 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M +IL+VDD + ++K LT+ G+++V A +G+EAV +++ KPDL+ +D+++PE+D
Sbjct: 4 MKKILIVDDEKPISDIIKFNLTKEGYDIV-TAFDGREAVTIFEEEKPDLIILDLMLPELD 62
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEV 114
G+ KEI K + IIM++A E + L+ GA Y+ KPF ++++ V
Sbjct: 63 GLEVAKEIRKTS-HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARV 115
>dbj|BAB06154.1| (AP001515) MCP-glutamate methylesterase / two-component response
regulator [Bacillus halodurans]
Length = 346
Score = 79.2 bits (192), Expect = 1e-14
Identities = 43/104 (41%), Positives = 68/104 (65%), Gaps = 2/104 (1%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
++LVVDD+AFMR ++ +L EVVG A NG++A++K K L PD++T+D+ MP MDG
Sbjct: 6 KVLVVDDSAFMRKVITSMLESDPRLEVVGTARNGEDALKKRKTLAPDVMTLDVEMPVMDG 65
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAK-VMEALKSGAKGYIVKP 104
I +K +M +P II+ + + A+ + A++ GA +I KP
Sbjct: 66 IETLKRLMSENPLPIIIVSSTTKEGAENALTAMELGAVDFITKP 109
>dbj|BAB07347.1| (AP001519) two-component response regulator involved in degradative
enzyme [Bacillus halodurans]
Length = 236
Score = 79.2 bits (192), Expect = 1e-14
Identities = 39/116 (33%), Positives = 72/116 (61%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
+I+++DD R +K+IL + EVV + +G+ AVE + PD++ MDI MP+++G
Sbjct: 11 QIVIIDDHQLFREGVKRILAMEPEFEVVADGEDGENAVELVETYNPDVILMDINMPKVNG 70
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
+ A +++++ P+ K+++++ E+ V LK+GA GY++K A +IE V V
Sbjct: 71 VEATRDLIQRYPDVKVLVLSIHDDESYVTHVLKTGASGYLLKEMDADALIEAVKVV 126
>sp|P43501|PILH_PSEAE PILH PROTEIN >gi|540957|pir||S40035 pilH protein - Pseudomonas
aeruginosa >gi|11352733|pir||A83594 twitching motility
protein PilH PA0409 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|401795|gb|AAA25950.1| (L22036) cheY
homologue [Pseudomonas aeruginosa]
>gi|9946264|gb|AAG03798.1|AE004478_3 (AE004478)
twitching motility protein PilH [Pseudomonas aeruginosa]
Length = 121
Score = 78.8 bits (191), Expect = 2e-14
Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 3/121 (2%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
MARIL+VDD+ L +L + GH+V+ +A NG + V +Q KPD+V MDIVMP ++
Sbjct: 1 MARILIVDDSPTEMYKLTAMLEKHGHQVL-KAENGGDGVALARQEKPDVVLMDIVMPGLN 59
Query: 61 GITAVKEIMKIDPNAKI--IMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G A +++ K + I I++T QE + + GA+ Y+ KP + +++ +N VL
Sbjct: 60 GFQATRQLTKDAETSAIPVIIVTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVL 119
Query: 119 S 119
+
Sbjct: 120 A 120
>gi|11467431 ycf27 [Cyanophora paradoxa] >gi|1351749|sp|P48259|YC27_CYAPA
PROBABLE TRANSCRIPTIONAL REGULATOR YCF27 (OMPR-LIKE
PROTEIN) >gi|7444023|pir||T06976 regulatory protein ompR
homolog - Cyanophora paradoxa cyanelle
>gi|1016232|gb|AAA81319.1| (U30821) ycf27 gene product
[Cyanophora paradoxa]
Length = 239
Score = 78.8 bits (191), Expect = 2e-14
Identities = 43/116 (37%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+ILVVDD +R +L+ L+ G+EVV A++G+EA+ ++ P+LV +D++MP++DG
Sbjct: 7 KILVVDDEISIRRILETRLSMIGYEVV-TAADGEEALTIFQLEHPNLVVLDVMMPKLDGY 65
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+E+ K + + IIM+TA+G A + L+ GA Y+VKPF +++ + +L
Sbjct: 66 GVCQELRK-ESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLL 120
>gb|AAF70312.1|AF260326_1 (AF260326) SrrA [Staphylococcus aureus]
Length = 244
Score = 78.8 bits (191), Expect = 2e-14
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
IL+VDD +R LLK L + E+ EASNG+EA E + + +D+++PEMDGI
Sbjct: 8 ILIVDDEDRIRRLLKMYLERESFEI-HEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 66
Query: 64 AVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
++ + IIM+TA G+E +E +SGA YIVKPF ++V+ V +L
Sbjct: 67 VATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 120
>emb|CAB99140.1| (AL390188) putative two-component system response regulator
[Streptomyces coelicolor A3(2)]
Length = 220
Score = 78.8 bits (191), Expect = 2e-14
Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 4/118 (3%)
Query: 3 RILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+L+VDD +R L+ +L Q EVVGEA++G V +Q++PD+V MD+ MP +DG
Sbjct: 4 RVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVVPLVRQVRPDVVAMDVRMPLLDG 63
Query: 62 ITAVKEIMK--IDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
I A + +++ DP KI+++T + V EAL++GA G+++K + +++ V +
Sbjct: 64 IEATRALLRTVADP-PKILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLI 120
>emb|CAA47908.1| (X67676) phoP [Bacillus subtilis]
Length = 240
Score = 78.4 bits (190), Expect = 2e-14
Identities = 42/116 (36%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+ILVVDD + LL+ L ++G++V+ AS+G+EA++K + KPDL+ +D+++P++DGI
Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVI-TASDGEEALKKAETEKPDLIVLDVMLPKLDGI 62
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
K++ + I+M+TA +E + L+ GA Y+ KPF ++V V +L
Sbjct: 63 EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 118
>gb|AAA22661.1| (M16775) phoP protein (put.); putative [Bacillus subtilis]
Length = 241
Score = 78.4 bits (190), Expect = 2e-14
Identities = 42/116 (36%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+ILVVDD + LL+ L ++G++V+ AS+G+EA++K + KPDL+ +D+++P++DGI
Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVI-TASDGEEALKKAETEKPDLIVLDVMLPKLDGI 62
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
K++ + I+M+TA +E + L+ GA Y+ KPF ++V V +L
Sbjct: 63 EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 118
>gb|AAA65231.1| (U09767) fixJ-like response regulator [Pseudomonas syringae]
Length = 214
Score = 78.4 bits (190), Expect = 2e-14
Identities = 36/120 (30%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
+ ++LVVDD +R + ++L G +VVG+A +G+E+++K ++LKPD+V MD+ MP +
Sbjct: 1 LIKVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKARELKPDVVLMDVKMPGI 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A +++++ P+ K++ +T ++ L++GA GY+ K ++++ + V +
Sbjct: 61 GGLEATRKMLRSHPDIKVVAVTVCEEDPFPTRLLQAGAAGYMTKGAGLAEMVQAIRLVFA 120
>sp|P52941|SP0A_MOOTH STAGE 0 SPORULATION PROTEIN A HOMOLOG >gi|497973|gb|AAA18884.1|
(U09983) Spo0A [Moorella thermoacetica]
Length = 206
Score = 78.4 bits (190), Expect = 2e-14
Identities = 38/109 (34%), Positives = 69/109 (62%), Gaps = 3/109 (2%)
Query: 3 RILVVDD-AAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
++L+ DD F +L + Q + G A NG+E +E ++ +PD+V +DI+MP +DG
Sbjct: 5 KVLIADDNREFSEVLEEYFNEQEDFVLSGVAHNGQETLELIQEQEPDIVILDIIMPHLDG 64
Query: 62 ITAVK--EIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQ 108
I ++ +++ +P KI+++TA+GQE+ M +++ GA YI+KPF +
Sbjct: 65 IGVLEKLQVLNFEPRPKIVILTALGQESMTMRSVELGADYYILKPFDLE 113
>pir||S60881 phosphorylation-activated transcription factor Spo0A - Clostridium
thermoaceticum (fragment)
Length = 207
Score = 78.4 bits (190), Expect = 2e-14
Identities = 38/109 (34%), Positives = 69/109 (62%), Gaps = 3/109 (2%)
Query: 3 RILVVDD-AAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
++L+ DD F +L + Q + G A NG+E +E ++ +PD+V +DI+MP +DG
Sbjct: 5 KVLIADDNREFSEVLEEYFNEQEDFVLSGVAHNGQETLELIQEQEPDIVILDIIMPHLDG 64
Query: 62 ITAVK--EIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQ 108
I ++ +++ +P KI+++TA+GQE+ M +++ GA YI+KPF +
Sbjct: 65 IGVLEKLQVLNFEPRPKIVILTALGQESMTMRSVELGADYYILKPFDLE 113
>sp|P13792|PHOP_BACSU ALKALINE PHOSPHATASE SYNTHESIS TRANSCRIPTIONAL REGULATORY PROTEIN
PHOP >gi|7429064|pir||RGBSAP phosphate response
regulator protein phoP - Bacillus subtilis
>gi|2293270|gb|AAC00348.1| (AF008220) signal
transduction regulator [Bacillus subtilis]
>gi|2635376|emb|CAB14871.1| (Z99118) two-component
response regulator [Bacillus subtilis]
Length = 240
Score = 78.4 bits (190), Expect = 2e-14
Identities = 42/116 (36%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+ILVVDD + LL+ L ++G++V+ AS+G+EA++K + KPDL+ +D+++P++DGI
Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVI-TASDGEEALKKAETEKPDLIVLDVMLPKLDGI 62
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
K++ + I+M+TA +E + L+ GA Y+ KPF ++V V +L
Sbjct: 63 EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 118
>pir||T29457 probable two-component regulator - Streptomyces coelicolor
>gi|3367769|emb|CAA20094.1| (AL031155) putative
two-component regulator [Streptomyces coelicolor A3(2)]
Length = 222
Score = 78.4 bits (190), Expect = 2e-14
Identities = 41/120 (34%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M +LVVDD R +L +VVGEA++G EAV K +L+PD+V MD+ MP M
Sbjct: 1 MTTVLVVDDQPLQRYGFHLLLDSVPETDVVGEAAHGVEAVRKAAELRPDVVLMDVRMPGM 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
DGI A + I+ ++++++T + V A+++GA G+++K + +++ + V S
Sbjct: 61 DGIEATRRIVAAGGRSRVLVLTTFDLDEYVHAAIRAGASGFLLKDARPDELLAGIRAVAS 120
>emb|CAB64972.1| (AJ012050) VicR protein [Enterococcus faecalis]
Length = 283
Score = 78.4 bits (190), Expect = 2e-14
Identities = 41/112 (36%), Positives = 72/112 (63%), Gaps = 2/112 (1%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+ILVVDD + ++K L + G+EV A +G+EA+EK ++++PDL+ +D+++P+MDG+
Sbjct: 52 KILVVDDEKPISEIVKYNLVKEGYEVF-TAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 110
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEV 114
+E+ K + IIM+TA E + L+ GA Y+ KPF ++++ V
Sbjct: 111 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARV 161
>pir||H81295 probable two-component regulator Cj1491c [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6968917|emb|CAB73913.1|
(AL139078) putative two-component regulator
[Campylobacter jejuni]
Length = 226
Score = 78.4 bits (190), Expect = 2e-14
Identities = 42/115 (36%), Positives = 71/115 (61%), Gaps = 5/115 (4%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
ILVV+D R + IL++ +V+G A NG E ++K+K+ KPDLV DI MP MDG+
Sbjct: 10 ILVVEDEVKARESMINILSERFSKVIG-AQNGDEGLKKFKKFKPDLVITDIAMPIMDGLD 68
Query: 64 AVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+EI +I + I++++A ++ +++ ++ G Y++KP IEE+ +VL
Sbjct: 69 MAREIKEISDDVPIVVLSAYSEKERLLRSIDIGIDKYLIKPVD----IEELFKVL 119
>prf||2016360A spo0F gene [Bacillus thuringiensis]
Length = 122
Score = 78.0 bits (189), Expect = 3e-14
Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+IL+VDD +R+LL ++ + G++ +A+NG +A++ K+ PDLV +D+ +P MDGI
Sbjct: 4 KILIVDDQYGIRVLLHEVFQKEGYQTF-QAANGFQALDIVKKDNPDLVVLDMKIPGMDGI 62
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
K +ID + K+I++TA G+ + EA GA + KPF ++ + V L+
Sbjct: 63 EIFKACKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRNELA 119
>pir||S76990 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001802|dbj|BAA10682.1| (D64005) nitrate/nitrite
response regulator protein [Synechocystis sp.]
Length = 209
Score = 78.0 bits (189), Expect = 3e-14
Identities = 36/116 (31%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQ-AGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+L+ DD A R L I+ + +V+ +A NG++A+ +++ +PD+ MD+ MPE++G
Sbjct: 8 RVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEG 67
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
+ A+ I I A+II++T + + L++GAKGY++K + +++ + V
Sbjct: 68 VAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTV 123
>gi|11498855 response regulator [Archaeoglobus fulgidus] >gi|7443020|pir||G69406
response regulator homolog - Archaeoglobus fulgidus
>gi|2649322|gb|AAB89986.1| (AE001017) response regulator
[Archaeoglobus fulgidus]
Length = 128
Score = 78.0 bits (189), Expect = 3e-14
Identities = 43/115 (37%), Positives = 71/115 (61%), Gaps = 4/115 (3%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
++V DD A + L K++ + +EV+ A NG+EA+ Y++ +PD+V MDI MPE+DG+
Sbjct: 13 MIVEDDLAVLEAL--KLMLEDYYEVI-VALNGREAIALYEKFRPDIVLMDISMPEVDGVE 69
Query: 64 AVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
A K I++ DP A I+ +TA + E L +GA+ I KPF + +++ + L
Sbjct: 70 ATKAILQKDPKAVILCVTAFAAH-RGQEILDAGAREIIEKPFTRKYLLDRIEHYL 123
>gi|11499995 response regulator [Archaeoglobus fulgidus] >gi|7443022|pir||D69552
response regulator homolog - Archaeoglobus fulgidus
>gi|2650670|gb|AAB91243.1| (AE001108) response regulator
[Archaeoglobus fulgidus]
Length = 114
Score = 78.0 bits (189), Expect = 3e-14
Identities = 42/118 (35%), Positives = 76/118 (63%), Gaps = 4/118 (3%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M +IL+V+D + + +L+ +EV+ +AS+G EA+E +K+ KPD+V MD+ +P +D
Sbjct: 1 MKKILLVEDEPDLLEIFGHMLSD--YEVI-KASDGNEAIELFKEHKPDIVLMDVELPGID 57
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G+ A + I++ +P AK+I ITA + E L++GA + KPF+ +++E + + L
Sbjct: 58 GVEATRRILEYNPAAKVIAITAFASR-RGKEMLEAGAVEVLKKPFRMHELLETIKKYL 114
>emb|CAA04532.1| (AJ001103) arcA [Lactococcus lactis]
Length = 233
Score = 78.0 bits (189), Expect = 3e-14
Identities = 41/114 (35%), Positives = 73/114 (63%), Gaps = 2/114 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M +ILVVDD + ++K LT+ G EV A +G+EA+E +K+++PDL+ +D+++P++D
Sbjct: 1 MKKILVVDDEKPISDIVKFNLTKEGFEVF-TAFDGEEALEAFKEVQPDLILLDLMLPKLD 59
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEV 114
G+ +EI K + IIM++A E + L+ GA Y+ KPF ++++ +
Sbjct: 60 GLDVAREIRKTS-DTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARI 112
>emb|CAC10294.1| (AL442629) putative two component system response regulator
[Streptomyces coelicolor]
Length = 224
Score = 78.0 bits (189), Expect = 3e-14
Identities = 43/122 (35%), Positives = 71/122 (57%), Gaps = 5/122 (4%)
Query: 3 RILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+++VDD A +R +L Q+ +VVGEA +G + VE ++ PD+V MD+ MPEMDG
Sbjct: 4 RVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVRMPEMDG 63
Query: 62 ITAVKEIMKIDPNA----KIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
+ A + ++ P +++M+T + V EAL++GA G+++K +I V V
Sbjct: 64 LEAARRLLSPPPGVTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVV 123
Query: 118 LS 119
S
Sbjct: 124 AS 125
>sp|P10957|NARL_ECOLI NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL
>gi|72613|pir||RGECNL nitrate/nitrite response regulator
protein narL - Escherichia coli
>gi|42102|emb|CAA31742.1| (X13360) narL [Escherichia
coli] >gi|42106|emb|CAA48935.1| (X69189) narL
[Escherichia coli] >gi|1651615|dbj|BAA36089.1| (D90757)
Nitrate/nitrite response regulator protein narL.
[Escherichia coli] >gi|1787473|gb|AAC74305.1| (AE000220)
pleiotrophic regulation of anaerobic respiration:
response regulator for nar, frd, dms and tor genes
[Escherichia coli K12]
Length = 216
Score = 77.6 bits (188), Expect = 4e-14
Identities = 37/116 (31%), Positives = 74/116 (62%), Gaps = 1/116 (0%)
Query: 2 ARILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
A IL++DD +R +K++++ A VVGEASNG++ +E + L PDL+ +D+ MP M+
Sbjct: 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMN 66
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNR 116
G+ + ++ + + +I++ + E V+ ALK GA GY++K + + +++ +++
Sbjct: 67 GLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQ 122
>gb|AAA24199.1| (M24910) nitrogenase reductase [Escherichia coli]
Length = 216
Score = 77.6 bits (188), Expect = 4e-14
Identities = 37/116 (31%), Positives = 74/116 (62%), Gaps = 1/116 (0%)
Query: 2 ARILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
A IL++DD +R +K++++ A VVGEASNG++ +E + L PDL+ +D+ MP M+
Sbjct: 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMN 66
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNR 116
G+ + ++ + + +I++ + E V+ ALK GA GY++K + + +++ +++
Sbjct: 67 GLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEHLLKALHQ 122
>emb|CAA33023.1| (X14884) narL [Escherichia coli]
Length = 254
Score = 77.6 bits (188), Expect = 4e-14
Identities = 37/116 (31%), Positives = 74/116 (62%), Gaps = 1/116 (0%)
Query: 2 ARILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
A IL++DD +R +K++++ A VVGEASNG++ +E + L PDL+ +D+ MP M+
Sbjct: 45 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMN 104
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNR 116
G+ + ++ + + +I++ + E V+ ALK GA GY++K + + +++ +++
Sbjct: 105 GLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQ 160
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
>gi|2981651|pdb|1A04|B Chain B, The Structure Of The
NitrateNITRITE RESPONSE REGULATOR Protein Narl In The
Monoclinic C2 Crystal Form >gi|1943446|pdb|1RNL| The
NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM Narl
Length = 215
Score = 77.6 bits (188), Expect = 4e-14
Identities = 37/116 (31%), Positives = 74/116 (62%), Gaps = 1/116 (0%)
Query: 2 ARILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
A IL++DD +R +K++++ A VVGEASNG++ +E + L PDL+ +D+ MP M+
Sbjct: 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMN 65
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNR 116
G+ + ++ + + +I++ + E V+ ALK GA GY++K + + +++ +++
Sbjct: 66 GLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQ 121
>gb|AAD16452.1| (AF102271) response-regulator [Streptomyces coelicolor A3(2)]
>gi|8568799|emb|CAB94548.1| (AL359152) chitinase
two-component response regulator [Streptomyces
coelicolor A3(2)]
Length = 213
Score = 77.6 bits (188), Expect = 4e-14
Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M R+LV +D + +R L IL A EVVGEA++G++AV ++L+PDLV MD+ MP M
Sbjct: 1 MIRVLVAEDQSAVRAGLVLILGSAPDIEVVGEAADGEQAVALARELRPDLVLMDVQMPRM 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
DG++A + I+ + A ++++T + V AL++GA G+++K A+ ++ V V
Sbjct: 61 DGVSATR-IVVGEQLADVLVLTTFDLDEYVFGALRAGAAGFLLKNTDARDLLAAVRTV 117
>pir||T36767 probable two-component system response regulator - Streptomyces
coelicolor >gi|5531455|emb|CAB50960.1| (AL096849)
putative two-component system response regulator
[Streptomyces coelicolor A3(2)]
Length = 221
Score = 77.3 bits (187), Expect = 5e-14
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+L+VDD +R + L TQ EVVGEA +G A+ + L+PD+V MDI MP MDG
Sbjct: 4 RLLIVDDQELIRTGFRLFLQTQNDLEVVGEADDGHGALAQAAALRPDVVLMDIRMPRMDG 63
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
+ A + D +++++T + V AL++GA G+++K +++E + V
Sbjct: 64 VEATSRLTASDSPPRVLILTTYDLDEYVFGALRAGASGFLLKDASRDRLLEAIRVV 119
>emb|CAB54568.1| (AJ006392) response regulator [Streptococcus pneumoniae]
Length = 234
Score = 77.3 bits (187), Expect = 5e-14
Identities = 41/118 (34%), Positives = 74/118 (61%), Gaps = 2/118 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M +IL+VDD + ++K +T+ G+EVV A NG+EA+E+++ +PD++ +D+++PE+D
Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVV-TAFNGREALEQFEAEQPDIIILDLMLPEID 59
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G+ K I K + I+M++A E + L+ GA Y+ KPF +++ V +L
Sbjct: 60 GLEVAKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALL 116
>pir||D83151 probable two-component response regulator PA3948 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9950136|gb|AAG07335.1|AE004813_2 (AE004813) probable
two-component response regulator [Pseudomonas
aeruginosa]
Length = 209
Score = 77.3 bits (187), Expect = 5e-14
Identities = 34/117 (29%), Positives = 71/117 (60%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M +L+VDD +R+ ++ +L + G +VV E NG +A++ ++ +PD+V +DI +P++D
Sbjct: 1 MHTVLIVDDHPVIRLAVRVLLEKHGLQVVAETDNGVDAIQLVREHEPDVVILDIGIPKLD 60
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
G+T + I + ++++++T+ EA ++ GA+G++ K +I +N V
Sbjct: 61 GLTVISRIKSLGLRSQVLVLTSQSAEAFCKRCIQVGARGFVNKEEDLNNLINALNAV 117
>pir||A38222 regulatory protein gacA - Pseudomonas fluorescens
Length = 213
Score = 76.9 bits (186), Expect = 7e-14
Identities = 37/120 (30%), Positives = 74/120 (60%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M R+LVVDD +R + ++L G +VVG+A +G+E++ K ++LKP +V MD+ MP +
Sbjct: 1 MIRVLVVDDHDLVRTGITRMLADIDGLQVVGQAESGEESLLKARELKPYVVLMDVKMPGI 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A +++++ P+ K++ +T ++ L++GA GY+ K ++++ + V +
Sbjct: 61 GGLEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQAGAAGYLTKGAGLNEMVQAIRLVFA 120
>sp|P32967|GACA_PSEFL RESPONSE REGULATOR GACA (GLOBAL ACTIVATOR) (GLOBAL ANTIBIOTIC AND
CYANIDE CONTROL PROTEIN) >gi|551930|gb|AAA25821.1|
(M80913) gacA [Pseudomonas fluorescens]
Length = 213
Score = 76.9 bits (186), Expect = 7e-14
Identities = 37/120 (30%), Positives = 74/120 (60%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M R+LVVDD +R + ++L G +VVG+A +G+E++ K ++LKP +V MD+ MP +
Sbjct: 1 MIRVLVVDDHDLVRTGITRMLADIDGLQVVGQAESGEESLLKARELKPYVVLMDVKMPGI 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A +++++ P+ K++ +T ++ L++GA GY+ K ++++ + V +
Sbjct: 61 GGLEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQAGAAGYLTKGAGLNEMVQAIRLVFA 120
>pir||S74986 regulatory components of sensory transduction system -
Synechocystis sp. (strain PCC 6803)
>gi|1652101|dbj|BAA17026.1| (D90902) regulatory
components of sensory transduction system [Synechocystis
sp.]
Length = 147
Score = 76.9 bits (186), Expect = 7e-14
Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 5/121 (4%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M +L+V+D++ R ++ IL G +V A +G EA+EK + PDLV +DIVMP M+
Sbjct: 27 MNAVLLVEDSSSQREMISGILKDHGWQVT-IACDGVEALEKLQNFSPDLVVLDIVMPRMN 85
Query: 61 GITAVKEIMKIDP---NAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
G + I K DP N +IM ++ G+E ++ GA YI KPFQ +++ + ++
Sbjct: 86 GYEVCRRI-KSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQL 144
Query: 118 L 118
L
Sbjct: 145 L 145
>sp|Q51373|GACA_PSEAE RESPONSE REGULATOR GACA (GLOBAL ACTIVATOR) >gi|11352482|pir||D83322
response regulator GacA PA2586 [imported] - Pseudomonas
aeruginosa (strain PAO1) >gi|2105387|gb|AAC45328.1|
(U89528) response regulator GacA [Pseudomonas
aeruginosa] >gi|9948649|gb|AAG05974.1|AE004687_3
(AE004687) response regulator GacA [Pseudomonas
aeruginosa]
Length = 214
Score = 76.9 bits (186), Expect = 7e-14
Identities = 34/120 (28%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M ++LVVDD +R + ++L G +VVG+A G++ ++ ++LKPD+V MD+ MP +
Sbjct: 1 MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGI 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A +++++ P+ K++++T ++ +++GA GY+ K +++++ + +V +
Sbjct: 61 GGLEATRKLLRSQPDIKVVVVTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFA 120
>pir||D69158 sensory transduction regulatory protein - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621514|gb|AAB84953.1| (AE000829) sensory
transduction regulatory protein [Methanobacterium
thermoautotrophicum]
Length = 277
Score = 76.9 bits (186), Expect = 7e-14
Identities = 48/111 (43%), Positives = 65/111 (58%), Gaps = 2/111 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMP-EM 59
MA+ILVV+D A + M + L GH VV S GK+A+ K +PDLV MDIV+ EM
Sbjct: 1 MAKILVVEDEAIVAMGITHKLESMGHRVVETVSTGKDAIMACKVHEPDLVLMDIVLKGEM 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKV 110
DGI A + I + N II +TA E + A + GYIVKPF++ ++
Sbjct: 61 DGIEAARRI-RDQFNIPIIYLTAYADEEMLTRAKVTEPYGYIVKPFKSSEL 110
>pir||E69796 two-component response regulator [YesM] homolog yesN - Bacillus
subtilis >gi|2633009|emb|CAB12515.1| (Z99107) similar to
two-component response regulator [YesM] [Bacillus
subtilis]
Length = 368
Score = 76.9 bits (186), Expect = 7e-14
Identities = 37/121 (30%), Positives = 68/121 (55%), Gaps = 2/121 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILT--QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPE 58
M +IL+ DD + + I+ G ++G+A NG EA EK +P +V D+ MP
Sbjct: 1 MYKILLADDERIILDGMAGIIEWESLGASLIGKAQNGHEAYEKIVHKQPHIVITDVKMPG 60
Query: 59 MDGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
MDG+ +K++ + P+ + I+++ G+ EA+K G K Y++KP Q++I + ++
Sbjct: 61 MDGLELIKKVSAVSPSVQFIVLSGFGEFEYAKEAMKYGVKHYLLKPCNEQQIISSLEEII 120
Query: 119 S 119
+
Sbjct: 121 A 121
>sp|P52942|SP0F_BACTK SPORULATION INITIATION PHOSPHOTRANSFERASE F (STAGE 0 SPORULATION
PROTEIN F) >gi|2127288|pir||I40583 spo0F protein
(Tn5401) - Bacillus thuringiensis
>gi|520403|gb|AAA64587.1| (U03553) Spo0F [Bacillus
thuringiensis]
Length = 122
Score = 76.5 bits (185), Expect = 9e-14
Identities = 40/117 (34%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+IL+VDD +R+LL ++ + G++ +A+NG +A++ K+ PDLV +D+ +P MDGI
Sbjct: 4 KILIVDDQYGIRVLLHEVFQKEGYQTF-QAANGFQALDIVKKDNPDLVVLDMKIPGMDGI 62
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
K +ID + K+I+++A G+ + EA GA + KPF ++ + V L+
Sbjct: 63 EIFKACKEIDESIKVILMSAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRNELA 119
>gb|AAB36948.1| (U78087) CheY [Burkholderia pseudomallei]
Length = 131
Score = 76.5 bits (185), Expect = 9e-14
Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 4/119 (3%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+ILVVDD MR +++ +L + G+ V EA +G + + + D V D MP +DG+
Sbjct: 6 KILVVDDFPTMRRIVRNLLKELGYSNVDEAEDGLAGLARLRGGGYDFVISDWNMPNLDGL 65
Query: 63 TAVKEIMKID---PNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+KEI + D + ++M+TA ++ ++ A ++GA GY+VKPF A + E++N++L
Sbjct: 66 AMLKEI-RADASLTHLPVLMVTAESKKENIIAAAQAGASGYVVKPFTAATLDEKLNKIL 123
>pir||T08624 probable NtrC-type response regulator - Eubacterium acidaminophilum
>gi|3402841|emb|CAA76904.1| (Y17872) NtrC-type response
regulator [Eubacterium acidaminophilum]
Length = 461
Score = 76.5 bits (185), Expect = 9e-14
Identities = 42/118 (35%), Positives = 71/118 (59%), Gaps = 1/118 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
RIL+VDD R +LK+IL ++ A +G++A+ K K+ + DLV D++MP MDG+
Sbjct: 8 RILIVDDEDEYRDILKRILEINAYDA-DTAVSGQDALVKIKKDEYDLVLSDLIMPGMDGV 66
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
+ EI KI + ++I++T G +EA++ GA Y VK ++++ E+ +V S
Sbjct: 67 ELLGEIKKIKKDIEVILVTGYGSIENAVEAMRKGAFSYFVKGNAPEELLGEIEKVRES 124
>emb|CAB87985.1| (AJ288947) Spo0A protein [Clostridium beijerinckii]
Length = 273
Score = 76.5 bits (185), Expect = 9e-14
Identities = 41/120 (34%), Positives = 72/120 (59%), Gaps = 3/120 (2%)
Query: 4 ILVVDD-AAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+L+ DD F +L +L Q V G A +G+EA+E + KPDLV +DI+MP +DG+
Sbjct: 8 VLIADDNKEFCSILNDYLLNQKDIVVTGIAKDGREALELIVERKPDLVILDIIMPHLDGL 67
Query: 63 TAVKEI--MKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
++++ M+++ +II+++AVGQ+ +A+ GA Y VKPF + + + + +S
Sbjct: 68 GVLEKLNTMQLEKVPRIIILSAVGQDKITQQAITLGADYYTVKPFDMEVFTKRIREMFNS 127
>pir||H82218 transcription regulator LuxR family VC1277 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655763|gb|AAF94436.1| (AE004207) transcriptional
regulator, LuxR family [Vibrio cholerae]
Length = 216
Score = 76.5 bits (185), Expect = 9e-14
Identities = 40/116 (34%), Positives = 70/116 (59%), Gaps = 1/116 (0%)
Query: 3 RILVVDD-AAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+++VDD + + ++ + EVV ASNG EA+E K +PD+V MD+ MP M+G
Sbjct: 10 RVVMVDDHQVVLDGFIARLEQEPEIEVVATASNGLEALELVKLHQPDVVLMDVSMPIMNG 69
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
I A + I + P+ K++M+T +M+ +++GA GY++K A K+++ + V
Sbjct: 70 IEATRLIKEEVPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKEISALKMVQAIKTV 125
>pir||B82292 response regulator VC0693 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9655133|gb|AAF93858.1| (AE004155)
response regulator [Vibrio cholerae]
Length = 237
Score = 76.1 bits (184), Expect = 1e-13
Identities = 43/121 (35%), Positives = 74/121 (60%), Gaps = 8/121 (6%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M L++DD F R L ++L ++G EV+G+ASN E ++K QLKPD+V +DI MP++
Sbjct: 1 MLSALLIDDERFAREELAELLAESGQIEVIGQASNAIEGLKKINQLKPDVVFLDIQMPQI 60
Query: 60 DGITAVKEIMKIDPNA--KIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
GI + + +DP +++ +TA Q A ++A + A Y++KP +++ + V R+
Sbjct: 61 SGI---ELLSMLDPETMPEVVFVTAYDQYA--LQAFEDNAFDYLLKPVDTERLAKTVQRL 115
Query: 118 L 118
L
Sbjct: 116 L 116
>dbj|BAB05663.1| (AP001513) two-component response regulator [Bacillus halodurans]
Length = 229
Score = 76.1 bits (184), Expect = 1e-13
Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
IL+VDD +R L+ L + G V A G EA+++ +Q DLV +D++M EMDG T
Sbjct: 7 ILIVDDELDLRELVTSYLRKEGFAVY-TAETGDEAIKRLEQEPMDLVVLDVMMDEMDGFT 65
Query: 64 AVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
A KEI IIM+TA G E + L+ GA YIVKPF ++++ + L
Sbjct: 66 ACKEIRAFS-QIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEVAL 119
>prf||1306301A spo0F gene [Bacillus subtilis]
Length = 123
Score = 75.7 bits (183), Expect = 2e-13
Identities = 37/114 (32%), Positives = 71/114 (61%), Gaps = 1/114 (0%)
Query: 5 LVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGITA 64
++VDD +R+LL ++ + G++ +A+NG +A++ + +PDLV +D+ +P MDGI
Sbjct: 6 ILVDDQYGIRILLNEVFNKEGYQTF-QAANGLQALDIVTKERPDLVLLDMKIPGMDGIEI 64
Query: 65 VKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+K + ID N ++I++TA G+ + E+ + GA + KPF ++ + V + L
Sbjct: 65 LKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 118
>sp|P52936|SP0A_CLOAB STAGE 0 SPORULATION PROTEIN A HOMOLOG >gi|497965|gb|AAA18880.1|
(U09979) Spo0A [Clostridium acetobutylicum]
Length = 223
Score = 75.7 bits (183), Expect = 2e-13
Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 4 ILVVDD-AAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+L+ DD F +L +L Q V G A +G EA+E + KPDLV +DI+MP +DG+
Sbjct: 8 VLIADDNKEFCSILNDYLLNQKDIVVTGIAKDGSEALELIVERKPDLVILDIIMPHLDGL 67
Query: 63 TAVKEI--MKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
++++ M+++ +II+++AVGQ+ +A+ GA Y VKPF + + + + +S
Sbjct: 68 GVLEKLNTMQLEKVPRIIILSAVGQDKITQQAITLGADYYTVKPFDMEVFTKRIREMFNS 127
>pir||S60877 phosphorylation-activated transcription factor Spo0A - Clostridium
acetobutylicum (strain NCIMB 8052) (fragment)
Length = 224
Score = 75.7 bits (183), Expect = 2e-13
Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 4 ILVVDD-AAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+L+ DD F +L +L Q V G A +G EA+E + KPDLV +DI+MP +DG+
Sbjct: 8 VLIADDNKEFCSILNDYLLNQKDIVVTGIAKDGSEALELIVERKPDLVILDIIMPHLDGL 67
Query: 63 TAVKEI--MKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
++++ M+++ +II+++AVGQ+ +A+ GA Y VKPF + + + + +S
Sbjct: 68 GVLEKLNTMQLEKVPRIIILSAVGQDKITQQAITLGADYYTVKPFDMEVFTKRIREMFNS 127
>pir||F82205 chemotaxis protein CheY VC1398 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9655893|gb|AAF94555.1| (AE004218)
chemotaxis protein CheY [Vibrio cholerae]
Length = 124
Score = 75.7 bits (183), Expect = 2e-13
Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 3/120 (2%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M +++VVDDA+ +RM K +L + G ++ EASNG EA+E+ ++ DL +DI MP+MD
Sbjct: 2 MKKVMVVDDASTVRMYHKALLEEIGIFIL-EASNGVEALERALEMPVDLFLVDINMPKMD 60
Query: 61 GITAVKEIMKIDPNAKI--IMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G T V+EI A I +MI+ QE+ + + GA Y+VKP +++ + V +L
Sbjct: 61 GFTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQQTVTLML 120
>emb|CAA63989.1| (X94328) spo0a [Clostridium difficile]
Length = 256
Score = 75.3 bits (182), Expect = 2e-13
Identities = 38/119 (31%), Positives = 72/119 (59%), Gaps = 2/119 (1%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
+L D+ F ++L + + + +++G A +G EA++ K+ +PDL+ +D++MP +DG+
Sbjct: 12 VLADDNKDFCQVLKEYLSNEDDIDILGIAKDGIEALDLVKKTQPDLLILDVIMPHLDGLG 71
Query: 64 AVKEI--MKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
++++ M I KII+++AVGQ+ A+ GA YIVKPF I + ++S+
Sbjct: 72 VIEKLNTMDIPKMPKIIVLSAVGQDKITQSAINLGADYYIVKPFDFVVFINRIRELVSN 130
>sp|P52938|SP0A_CLODI STAGE 0 SPORULATION PROTEIN A HOMOLOG >gi|1174099|gb|AAB05561.1|
(U43514) phosphorylation-activated transcription factor
spo0a [Clostridium difficile]
Length = 274
Score = 75.3 bits (182), Expect = 2e-13
Identities = 38/119 (31%), Positives = 72/119 (59%), Gaps = 2/119 (1%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
+L D+ F ++L + + + +++G A +G EA++ K+ +PDL+ +D++MP +DG+
Sbjct: 12 VLADDNKDFCQVLKEYLSNEDDIDILGIAKDGIEALDLVKKTQPDLLILDVIMPHLDGLG 71
Query: 64 AVKEI--MKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
++++ M I KII+++AVGQ+ A+ GA YIVKPF I + ++S+
Sbjct: 72 VIEKLNTMDIPKMPKIIVLSAVGQDKITQSAINLGADYYIVKPFDFVVFINRIRELVSN 130
>emb|CAB88489.1| (AL353816) putative two-component systen response regulator
[Streptomyces coelicolor A3(2)]
Length = 248
Score = 75.3 bits (182), Expect = 2e-13
Identities = 42/116 (36%), Positives = 65/116 (55%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
RIL+VDD +R L++ L G++ A +G +A+EK +PDLV +DI MP MDG+
Sbjct: 16 RILIVDDEPAVREALQRSLAFEGYDTE-VAVDGADALEKATAYRPDLVVLDIQMPRMDGL 74
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
TA + I I+M+TA + L +GA Y+VKPF+ ++ + +L
Sbjct: 75 TAARRIRGAGDLTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALL 130
>pir||A72263 response regulator - Thermotoga maritima (strain MSB8)
>gi|4981920|gb|AAD36430.1|AE001790_2 (AE001790) response
regulator [Thermotoga maritima]
Length = 116
Score = 74.9 bits (181), Expect = 3e-13
Identities = 47/119 (39%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M RILVVDD +R LLK+ L + G+E+ A NG+EA++K+ DLV +DI MP +
Sbjct: 1 MKRILVVDDEPNIRELLKEELQEEGYEI-DTAENGEEALKKFFSGNYDLVILDIEMPGIS 59
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ EI K +AKII++TA + + A Y+VK F ++ E+V ++LS
Sbjct: 60 GLEVAGEIRKKKKDAKIILLTAYSHYRSDLSSW--AADEYVVKSFNFDELKEKVKKLLS 116
>pir||D83624 probable two-component response regulator PA0179 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9946012|gb|AAG03569.1|AE004455_10 (AE004455)
probable two-component response regulator [Pseudomonas
aeruginosa]
Length = 121
Score = 74.9 bits (181), Expect = 3e-13
Identities = 42/117 (35%), Positives = 68/117 (57%), Gaps = 3/117 (2%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
IL+VDD+A +R +L L AG+EV EA++GKE + K + LV D MP MDG++
Sbjct: 5 ILIVDDSASIRQMLSFTLKSAGYEV-DEAADGKEGLGKAQSKSYSLVFTDQNMPNMDGLS 63
Query: 64 AVKEIMKIDP--NAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
++ + + + I+M+T +A + +GA G++VKPF K++E +VL
Sbjct: 64 LIRSLRNLAGYRSVPILMLTTESSDAMKQQGRSAGATGWLVKPFDPPKLLEVTRKVL 120
>gb|AAC28085.1| (AF100457) response regulator [Myxococcus xanthus]
Length = 509
Score = 74.5 bits (180), Expect = 3e-13
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
R+LVVDD MR +L +A + V EA+ G+EA+ + DL+ D+ M MDG+
Sbjct: 12 RLLVVDDQRNMRATTA-LLLRAENYTVFEAATGEEALAQLASGSIDLLLTDLKMEPMDGL 70
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
T ++ +++ P ++IM+TA G +EA++ GA Y+ KPF+ ++ V R L
Sbjct: 71 TLLRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERAL 126
>dbj|BAB05629.1| (AP001513) two-component response regulator [Bacillus halodurans]
Length = 506
Score = 74.5 bits (180), Expect = 3e-13
Identities = 39/119 (32%), Positives = 67/119 (55%), Gaps = 2/119 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILT--QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPE 58
M +++VDD A +R LK +++ + G V+ A NGKE KY+QL PDL+ +DI MPE
Sbjct: 1 MYDVMIVDDEAMVREGLKALISWEEYGFRVIDTARNGKEGFTKYRQLSPDLMIVDIRMPE 60
Query: 59 MDGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
+DG++ ++ I D I+++ +AL Y++KP ++I+ + +V
Sbjct: 61 VDGLSLIESIRAEDSAIHFIILSGHSDFNYAKKALGCQCDDYLLKPLDEDELIDSLKKV 119
>sp|O85128|CHEB_AGRTU PROTEIN-GLUTAMATE METHYLESTERASE >gi|3282794|gb|AAC25079.1|
(AF044495) CheB homolog [Agrobacterium tumefaciens]
Length = 351
Score = 74.1 bits (179), Expect = 4e-13
Identities = 46/107 (42%), Positives = 68/107 (62%), Gaps = 4/107 (3%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
+AR+LVVDD+ MR L+ +L EVVG+A N EA KQL PD+VT+DI MPEM
Sbjct: 4 LARVLVVDDSPTMRGLISAVLKADPEVEVVGQAGNAMEARAAIKQLNPDVVTLDIEMPEM 63
Query: 60 DGITAVKEIMKIDPNAKIIM--ITAVGQEAKVMEALKSGAKGYIVKP 104
+G+ +++IM++ P I++ +T G +A + AL+ GA + KP
Sbjct: 64 NGLEFLEKIMRLRPMPVIMVSSLTHRGADAS-LAALEIGAFDCVGKP 109
>emb|CAB54578.1| (AJ006397) response regulator [Streptococcus pneumoniae]
Length = 232
Score = 74.1 bits (179), Expect = 4e-13
Identities = 39/115 (33%), Positives = 66/115 (56%), Gaps = 1/115 (0%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
IL+VDD + + ++ L QAG++V+ A +G EA+E +K+ DL+ D++MP MDG
Sbjct: 5 ILLVDDEVEITDIHQRYLIQAGYQVL-VAHDGLEALELFKKKPIDLIITDVMMPRMDGYD 63
Query: 64 AVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+ E+ + P + ITA E + L GA +I KPF ++++ V+ +L
Sbjct: 64 LISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118
>dbj|BAB05932.1| (AP001514) two-component response regulator [Bacillus halodurans]
Length = 217
Score = 74.1 bits (179), Expect = 4e-13
Identities = 39/118 (33%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 3 RILVVDDAAFMRM-LLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
RI VVDD +R L+ + T +VGEA +G+ A+ ++++PD+V MD++MP ++G
Sbjct: 4 RIAVVDDHHVVRKGLIYFLETYHDFTIVGEAEDGEAALTLVEKVQPDIVLMDVIMPGING 63
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
I A K+I + P ++++++ + V+ AL++GA GY +K + + E + V S
Sbjct: 64 IEATKKIKQKWPTVHVVVLSSSAERESVIPALQAGANGYQLKEVDPEMLAETIRAVCS 121
>dbj|BAB06447.1| (AP001516) two-component response regulator [Bacillus halodurans]
Length = 510
Score = 74.1 bits (179), Expect = 4e-13
Identities = 39/106 (36%), Positives = 61/106 (56%), Gaps = 2/106 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILT--QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPE 58
M +L+VDD +R + + G ++VGEA+NGK+A+E + +P +V DIVMP
Sbjct: 1 MCNVLIVDDEKLIRQGIINFFDWEKEGFQIVGEAANGKDALELISKNEPHIVMTDIVMPV 60
Query: 59 MDGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKP 104
MDGI VK + + P +II++++ + V SG YI+KP
Sbjct: 61 MDGIDLVKRVKRDFPEVEIIVLSSFEEFEYVRSTFHSGVADYILKP 106
>gb|AAD30120.2| (AF135389) DNA binding response regulator RpaA [Tolypothrix
PCC7601]
Length = 247
Score = 73.7 bits (178), Expect = 6e-13
Identities = 39/120 (32%), Positives = 71/120 (58%), Gaps = 3/120 (2%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M RILV+DD + L+ L AG++V +A +G + QL+PDL+ +D+++P +D
Sbjct: 1 MPRILVIDDDPAISELVAVNLEMAGYDV-SQAEDGIKGQALALQLQPDLIMLDLMLPRVD 59
Query: 61 GITAVKEIMKIDPNAKI--IMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G T + + + + A+I +M+TA+ Q +E +GA Y+ KPF+ ++++ V +L
Sbjct: 60 GFTVCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 119
>emb|CAB94653.1| (AL359215) putative two-component system response regulator.
[Streptomyces coelicolor A3(2)]
Length = 229
Score = 73.4 bits (177), Expect = 8e-13
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M R+L+++D +R ++ L + GHEV A+ G++ +E+ + +PD V +D+++P M
Sbjct: 1 MPRVLIIEDDRAVRDGVRLALRRQGHEVAA-AATGEDGLEQLRSFRPDAVVLDLMLPGMS 59
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G+ + I D IIM TA G + ++ L++GA Y+VKP +A+ + + VL
Sbjct: 60 GLEVCRRIRAHD-QVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARILDARIRAVL 116
>gb|AAG34369.1|AF197465_1 (AF197465) nitrate/nitrite response regulator; NarL [Pseudomonas
fluorescens]
Length = 215
Score = 73.4 bits (177), Expect = 8e-13
Identities = 37/117 (31%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 4 ILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+L+VDD MR ++++L + +VGEAS+G+EA+ + L+PDLV +D MP+M+GI
Sbjct: 9 LLLVDDHPMMRRGIRQMLELEDDLHIVGEASHGEEALSLIEPLQPDLVLLDNNMPQMNGI 68
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
++ + + K+++ T E + +AL+ A GY++K + + +I+ + L+
Sbjct: 69 ETLRRLRAMHYTGKVLLFTVSDAEDDIRDALRLDANGYLLKDMEPELLIQYIRDALN 125
>sp|P24086|YLB3_LEPIN HYPOTHETICAL 15.1 KDA PROTEIN IN LEUB 3'REGION (ORF 2)
>gi|149620|gb|AAA72089.1| (M59431) ORF2 [Leptospira
borgpetersenii]
Length = 135
Score = 73.0 bits (176), Expect = 1e-12
Identities = 37/117 (31%), Positives = 67/117 (56%), Gaps = 1/117 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLK-PDLVTMDIVMPEMDG 61
++L+ +++ F L +IL G++V+G A NGKE V+ Y + + DL+T+D+ +P MDG
Sbjct: 13 QVLIAENSRFQAKQLAQILESEGYQVIGFAENGKELVKLYDEHRLVDLITLDLNLPVMDG 72
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
EI +I++++ A + + GA YI KP + +K++E+VN +
Sbjct: 73 YATFFEIKGKGVLPRIVIVSEENTPAVLKNLIDEGAMDYIPKPIKREKILEKVNAAI 129
>pir||E69102 sensory transduction regulatory protein - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622893|gb|AAB86230.1| (AE000931) sensory
transduction regulatory protein [Methanobacterium
thermoautotrophicum]
Length = 444
Score = 73.0 bits (176), Expect = 1e-12
Identities = 40/110 (36%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 2 ARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMP-EMD 60
A+++VV+D + + + + + L G+EV S+G++AVE ++ +PD++ MDIV+ EM
Sbjct: 8 AKVMVVEDESIVAIDISQRLQSLGYEVTATVSSGEKAVEMAEKTRPDIILMDIVLKGEMG 67
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKV 110
GI A +EI K I+ ITA E + A +G GYI+KPF+ +++
Sbjct: 68 GIEAAEEINK-RMKVPIVYITAYSDEETLRRAKVTGPFGYIIKPFEDREL 116
>pir||G75461 DNA-binding response regulator - Deinococcus radiodurans (strain
R1) >gi|6458612|gb|AAF10469.1|AE001942_1 (AE001942)
DNA-binding response regulator [Deinococcus radiodurans]
Length = 194
Score = 73.0 bits (176), Expect = 1e-12
Identities = 37/117 (31%), Positives = 61/117 (51%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
R+++ DD RM LK L Q G +VV EA++G A++ + +PD +D+ MP M GI
Sbjct: 2 RLVIADDHPLFRMGLKYALIQQGFDVVAEAADGPSALDACRTYQPDAALLDVKMPGMTGI 61
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
+ P I+IT + A V A +GAKGY+ K + + ++ +++
Sbjct: 62 EVCDRLRLTAPRVVSILITTFAEPAIVQAARAAGAKGYVSKETDPESLARQLREIVA 118
>dbj|BAB05842.1| (AP001514) two-component response regulator [Bacillus halodurans]
Length = 223
Score = 73.0 bits (176), Expect = 1e-12
Identities = 37/117 (31%), Positives = 66/117 (55%), Gaps = 1/117 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
+ +L+ DD MR LK I+ + V G A NGKE +++ L P ++ MDI MP M
Sbjct: 3 LINVLIADDQTLMREGLKTIIDLEDDMNVTGLAKNGKEVLDQIPCLLPHVILMDIQMPIM 62
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNR 116
+GI +K + +I P+ ++M+T + ++E+L GA G+++K ++I + +
Sbjct: 63 NGIECLKVVKRIYPHINVLMLTTFEDDDYIIESLVGGANGFLLKDLNYDQLIYSIRQ 119
>sp|Q04942|AFQ1_STRCO TRANSCRIPTIONAL REGULATORY PROTEIN AFSQ1 >gi|322268|pir||A45270
sensory response regulator homolog AfsQ1 - Streptomyces
coelicolor >gi|216983|dbj|BAA01502.1| (D10654) AfsQ1
[Streptomyces coelicolor A3(2)]
Length = 225
Score = 72.6 bits (175), Expect = 1e-12
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M +L+++D +R L+ LT+ GH V AS G++ ++ ++ +PDL+ +D+++P +D
Sbjct: 1 MPSLLLIEDDEAIRTALELSLTRQGHRVATAAS-GEDGLKLLREQRPDLIVLDVMLPGID 59
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G + I + D II++TA + V+ L+SGA Y+VKP Q + + + VL
Sbjct: 60 GFEVCRRIRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116
>gb|AAA68948.1| (U27988) GacA [Pseudomonas aeruginosa]
Length = 213
Score = 72.6 bits (175), Expect = 1e-12
Identities = 34/120 (28%), Positives = 76/120 (63%), Gaps = 2/120 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M ++LVVDD +R + ++L G +VVG+A G++ ++ ++LKPD+V MD+ MP +
Sbjct: 1 MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGI 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A +++++ P+ K++++T ++ +++GA GY+ K +++++ + +V +
Sbjct: 61 GGLEATRKLLRSQPDIKVVVVTVCEEDPFPTRLMQAGA-GYMTKGAGLEEMVQAIRQVFA 119
>dbj|BAB06876.1| (AP001517) two-component response regulator involved in phosphate
regulation [Bacillus halodurans]
Length = 239
Score = 72.6 bits (175), Expect = 1e-12
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
R+LVVDD + LL+ L Q+G+EVV A +G ++ K DL+ +D+++PEMDG+
Sbjct: 4 RLLVVDDEESIVTLLQFNLEQSGYEVV-TAMDGASGLQLAKTQTFDLIILDLMLPEMDGL 62
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
K++ + I+M+TA E + L+ GA Y+ KPF ++V+ V +L
Sbjct: 63 DVCKQLRQSKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAIL 118
>emb|CAB92376.1| (AL356612) putative two-component response regulator [Streptomyces
coelicolor A3(2)]
Length = 222
Score = 72.2 bits (174), Expect = 2e-12
Identities = 37/118 (31%), Positives = 65/118 (54%), Gaps = 1/118 (0%)
Query: 1 MARILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M +L+ DD R + +L +Q VVGEA+NG EA +L PD+V MD+ MP +
Sbjct: 1 MTTVLIADDQPLQRFGFRMLLESQDDMTVVGEAANGAEAARMAAELHPDVVLMDVRMPGL 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
DGI A + I+ ++++++T + L++GA G++VK ++++ + V
Sbjct: 61 DGIEATRRIVAGGGRSRVLILTTFDLDEYAYSGLRAGASGFLVKDALPEELLSGIRAV 118
>sp|P14375|HYDG_ECOLI TRANSCRIPTIONAL REGULATORY PROTEIN HYDG >gi|7429086|pir||B33862
transcription regulator hydG - Escherichia coli
>gi|396343|gb|AAC43102.1| (U00006) hydG [Escherichia
coli] >gi|1790437|gb|AAC76978.1| (AE000473) response
regulator of hydrogenase 3 activity (sensor HydH)
[Escherichia coli K12]
Length = 441
Score = 71.8 bits (173), Expect = 2e-12
Identities = 40/116 (34%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
ILVVDD +L+ +L G+ V A++G++A+E+ ++ DLV D+ M EMDGI
Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVA-LANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66
Query: 64 AVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
+KEI ++P ++++TA +EALK+GA Y++KP + + + L+
Sbjct: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122
>pir||S76827 hypothetical protein slr1588 - Synechocystis sp. (strain PCC 6803)
>gi|1000118|gb|AAB41278.1| (U32936) orf 421
[Synechocystis PCC6803] >gi|1653828|dbj|BAA18739.1|
(D90916) hypothetical protein [Synechocystis sp.]
Length = 421
Score = 71.4 bits (172), Expect = 3e-12
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 5/119 (4%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLK--PDLVTMDIVMPE 58
M+ ILVV+D A +R L+ + L+ ++++ EA NG A+ L+ PDL+ D++MPE
Sbjct: 1 MSTILVVEDEAIIRELIGETLSLENYKIL-EAENGAVALGLLNSLEVMPDLIICDVMMPE 59
Query: 59 MDGITAVKEIMKIDPNAKI--IMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVN 115
MDG + + K A I I +TA+G + + SGA Y++KPF+ + ++ VN
Sbjct: 60 MDGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVN 118
>pir||S76708 sensory transduction system regulatory protein slr0115 -
Synechocystis sp. (strain PCC 6803)
>gi|1208484|dbj|BAA10652.1| (D64004) regulatory
components of sensory transduction system [Synechocystis
sp.]
Length = 241
Score = 71.4 bits (172), Expect = 3e-12
Identities = 39/120 (32%), Positives = 71/120 (58%), Gaps = 3/120 (2%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M RIL++DD + L+ L AG++V +A +G + QL+PDL+ +D+++P++D
Sbjct: 1 MPRILIIDDDPAISDLVSINLEMAGYDVQ-QAVDGIKGQALAVQLQPDLIMLDLMLPKVD 59
Query: 61 GITAVKEIMKIDPNAKI--IMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G T + + + + A I +M+TA+GQ ++ SGA Y+ KPF ++++ V +L
Sbjct: 60 GFTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALL 119
>gb|AAB71331.1| (U64519) CheY [Rhodospirillum centenum (Rhodocista centenaria)]
Length = 121
Score = 71.4 bits (172), Expect = 3e-12
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M LVVDD+ +R + +KIL + G EA +GK+A+EK + PD V +D MP M
Sbjct: 1 MKSCLVVDDSRVVRKVARKILEELGFTCT-EAEDGKQAMEKCAEAMPDAVLLDWNMPVMT 59
Query: 61 GITAVKEIMKIDPN--AKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
GI ++ + K+ K++ T A + EAL +GA YI+KPF + + + +V
Sbjct: 60 GIEFLRRLRKMTGGQAPKVVFCTTENDLAHIQEALSAGANEYIMKPFDSDIIQTKFQQV 118
>pir||T35597 probable two-component regulator - Streptomyces coelicolor
>gi|3449280|emb|CAA20424.1| (AL031317) putative
two-component regulator [Streptomyces coelicolor A3(2)]
>gi|3618247|emb|CAA09263.1| (AJ010601) two-component
regulator (luxR family) [Streptomyces coelicolor A3(2)]
Length = 203
Score = 71.4 bits (172), Expect = 3e-12
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKK-ILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M +LV DD+ R L++ + T G E V A+NG+E + ++ + DL+ MD+ MP +
Sbjct: 1 MTSVLVCDDSPLAREALRRAVATVPGVERVTTAANGEEVLRRWGADRSDLILMDVRMPGL 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ V+ ++ DP A+IIM+T V A+ +GA+GY+ K ++ V + L+
Sbjct: 61 GGVETVRRLLSADPGARIIMLTVAEDLDGVALAVAAGARGYLHKDASRAELRATVTQALA 120
>emb|CAB76988.1| (AL159178) putative response regulator [Streptomyces coelicolor
A3(2)]
Length = 256
Score = 71.4 bits (172), Expect = 3e-12
Identities = 42/117 (35%), Positives = 67/117 (56%), Gaps = 2/117 (1%)
Query: 2 ARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
ARILVVDD + ++ L +AG+ V A +G EA+ + +PDLV +D+++P MDG
Sbjct: 29 ARILVVDDDPTVAEVVAGYLDRAGYRV-DRAGDGPEALARAAGHRPDLVVLDLMLPGMDG 87
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+ + + P +IM+TA G E + L+ GA Y+ KPF ++++ V VL
Sbjct: 88 LEVCRRLRGQGP-VPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVL 143
>pir||F83640 probable two-component response regulator PA0034 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9945855|gb|AAG03424.1|AE004443_2 (AE004443) probable
two-component response regulator [Pseudomonas
aeruginosa]
Length = 207
Score = 71.4 bits (172), Expect = 3e-12
Identities = 32/119 (26%), Positives = 68/119 (56%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M+++L+VDD +R+ ++ + + G +VGEA NG EA++ ++ PDL +DI +P++D
Sbjct: 1 MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKID 60
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ + + + + K++++T L++GA G++ K +++ VL+
Sbjct: 61 GLEVIARLKSLKLDTKVLVLTRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLA 119
>dbj|BAB06470.1| (AP001516) two-component response regulator [Bacillus halodurans]
Length = 230
Score = 71.4 bits (172), Expect = 3e-12
Identities = 35/114 (30%), Positives = 68/114 (58%), Gaps = 7/114 (6%)
Query: 1 MARILVVDDAAFM----RMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVM 56
+ R+L+++D + RM ++K+ +G +VG + G+E + K ++L+PDL+ +DI M
Sbjct: 6 LIRVLLIEDDPMVQEVNRMFVEKL---SGFTIVGTTATGEEGMVKTRELQPDLILLDIFM 62
Query: 57 PEMDGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKV 110
P+ DG++ +K+I + + II +TA + L+ G Y+VKPF +++
Sbjct: 63 PKQDGLSFIKQIREQYIDVDIIAVTAANDTKTIKTLLRYGVMDYLVKPFTFERL 116
>sp|P07027|UVRY_ECOLI UVRY PROTEIN >gi|72610|pir||QQEC24 probable transcription regulator
uvrY - Escherichia coli >gi|551848|gb|AAA24755.1|
(M24615) 24 kD protein (ttg start codon) [Escherichia
coli] >gi|581252|emb|CAA28982.1| (X05398) 24 kD protein
(AA 1-218) [Escherichia coli]
>gi|1736573|dbj|BAA15734.1| (D90832) ORF_ID:o341#11;
similar to [PIR Accession Number A26750] [Escherichia
coli] >gi|1788222|gb|AAC74981.1| (AE000284) putative
2-component transcriptional regulator [Escherichia coli
K12]
Length = 218
Score = 71.0 bits (171), Expect = 4e-12
Identities = 41/120 (34%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M +L+VDD +R +++IL G +VVGEAS G++AV+ + D+V MD+ MP +
Sbjct: 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGI 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A ++I + + KIIM+T + + +++GA GY+ K Q+V+ + V S
Sbjct: 61 GGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYS 120
>sp|P25852|HYDG_SALTY TRANSCRIPTIONAL REGULATORY PROTEIN HYDG >gi|2120002|pir||S19606
hydrogenase regulatory protein hydG - Salmonella
typhimurium >gi|154142|gb|AAA27149.1| (M64988)
hydrogenase G [Salmonella typhimurium]
Length = 441
Score = 71.0 bits (171), Expect = 4e-12
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
ILVVDD +L+ +L G+ V A +G +A+ + ++ DLV D+ M EMDGI
Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVA-LAYSGHDALAQVREKVFDLVLCDVRMAEMDGIA 66
Query: 64 AVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
+KEI ++P I+++TA +EALK+GA Y++KP ++ E + + L+
Sbjct: 67 TLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKALA 122
>sp|Q52883|CHEB_RHIME PROTEIN-GLUTAMATE METHYLESTERASE >gi|2120799|pir||S61837
protein-glutamate methylesterase (EC 3.1.1.61) cheB -
Rhizobium meliloti >gi|534840|gb|AAA86677.1| (U13166)
CheB [Sinorhizobium meliloti]
Length = 349
Score = 71.0 bits (171), Expect = 4e-12
Identities = 43/105 (40%), Positives = 66/105 (61%), Gaps = 2/105 (1%)
Query: 2 ARILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
AR+LVVDD+A MR L+ +L VVG+A++ EA + KQL PD+VT+DI MP M+
Sbjct: 5 ARVLVVDDSATMRGLISAVLNADPDISVVGQAADALEARQAIKQLDPDVVTLDIEMPNMN 64
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAK-VMEALKSGAKGYIVKP 104
G+ + +IM++ P I++ T + A+ + AL+ GA + KP
Sbjct: 65 GLEFLDKIMRLRPMPVIMVSTLTHRGAEATIAALEIGAFDCVGKP 109
>gb|AAF33506.1| (AF170176) Salmonella typhimurium transcriptional regulatory
protein (HYDG) (SW:P25852); contains similarity to Pfam
domain PF00158 (sigma54), Score=609.2, E=2.4e-179, N=1
and PF00072 (response_reg), Score=158, E=1.6e-43, N=1
[Salmonella typhimurium LT>
Length = 441
Score = 71.0 bits (171), Expect = 4e-12
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
ILVVDD +L+ +L G+ V A +G +A+ + ++ DLV D+ M EMDGI
Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVA-LAYSGHDALAQVREKVFDLVLCDVRMAEMDGIA 66
Query: 64 AVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
+KEI ++P I+++TA +EALK+GA Y++KP ++ E + + L+
Sbjct: 67 TLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKALA 122
>gb|AAA85582.1| (U30377) putative DNA-binding protein; two-component regulatory
system [Rhodospirillum rubrum]
Length = 481
Score = 70.6 bits (170), Expect = 5e-12
Identities = 44/121 (36%), Positives = 68/121 (55%), Gaps = 5/121 (4%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEV--VGEASNGKEAVEKYKQLKPDLVTMDIVMPE 58
M+ ILV DD +R +L + LT+AGHEV G AS V + DLV D++MP+
Sbjct: 1 MSTILVADDDRGIRTVLSQALTRAGHEVRSTGTASTLWSWVTDGQG---DLVITDVIMPD 57
Query: 59 MDGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+G+ + I KI P+ +I++++A ++A + GA Y+ KPF +V+ V R L
Sbjct: 58 ENGLDLIPRIKKIRPDLRIVVMSAQNTLLTAVKATERGAFEYLPKPFDLTEVVNVVRRAL 117
Query: 119 S 119
S
Sbjct: 118 S 118
>pir||T36077 probable two-component response regulator - Streptomyces coelicolor
>gi|4585835|emb|CAB40929.1| (AL049630) putative two
component response regulator [Streptomyces coelicolor
A3(2)]
Length = 224
Score = 70.6 bits (170), Expect = 5e-12
Identities = 39/119 (32%), Positives = 68/119 (56%), Gaps = 3/119 (2%)
Query: 3 RILVVDDAAFMRMLLKKILT-QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+++VDD +R + +L Q EVV EA +G EA++ + D+V MD+ MP++DG
Sbjct: 4 RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALQVLRSTAVDVVLMDVRMPKLDG 63
Query: 62 ITAVKEIMKIDPNA-KIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
+ I +DPNA K++++T + ALK+GA G+++K +++ + V S
Sbjct: 64 VETTSRIC-VDPNAPKVLILTTFDLDEYAFSALKAGASGFMLKDVPPGELLAAIRSVHS 121
>dbj|BAB05828.1| (AP001514) unknown conserved protein [Bacillus halodurans]
Length = 525
Score = 70.6 bits (170), Expect = 5e-12
Identities = 36/113 (31%), Positives = 68/113 (59%), Gaps = 3/113 (2%)
Query: 1 MARILVVDDAAFMRMLLKKILT--QAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPE 58
M ++L+ DD F+R LK ++ + G+EV EA NG++A + +++KPDLV DI MP
Sbjct: 1 MYKVLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLVQEIKPDLVITDIRMPV 60
Query: 59 MDGITAVKEIMK-IDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKV 110
DG+ ++++ + + N K I+I+ + +A++ GA +++KP ++
Sbjct: 61 FDGLQLIQKVNETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKPIDQDEL 113
>sp|P39486|YGD1_BACME HYPOTHETICAL 26.2 KD PROTEIN IN GDHI 5'REGION (ORF 1)
>gi|80121|pir||JS0383 hypothetical 26.2K protein -
Bacillus megaterium >gi|216266|dbj|BAA14097.1| (D90043)
ORF1 [Bacillus megaterium] >gi|228655|prf||1808263A gdhI
upstream ORF1 [Bacillus megaterium]
Length = 228
Score = 70.2 bits (169), Expect = 7e-12
Identities = 36/117 (30%), Positives = 67/117 (56%), Gaps = 1/117 (0%)
Query: 4 ILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
+L+++D ++ + ++ + Q G V+ ASNG E V+ KQ +PDL +D+ MP DG+
Sbjct: 8 VLLIEDDPMVQEVNRQFIEQVEGFTVIAAASNGLEGVQLIKQHQPDLTIIDMYMPSQDGL 67
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
T +++I +I +TA V + L+ GA YI+KPF+ +++ + + + S
Sbjct: 68 TTLQQIRANGYKTDVIAVTAASDIETVRKVLQYGAVDYIMKPFKFERMKQALEQYRS 124
>gb|AAC44858.1| (U62038) chemotaxis protein [Campylobacter jejuni]
Length = 119
Score = 70.2 bits (169), Expect = 7e-12
Identities = 45/113 (39%), Positives = 69/113 (60%), Gaps = 7/113 (6%)
Query: 13 MRMLLKKILTQAGHEVVGEASNGKEA---VEKYKQLKPDLVTMDIVMPEMDGITAVKEIM 69
MR ++K LT+ GH+ V EA +G EA + K + +K ++ D MPEM+G+ VK++
Sbjct: 1 MRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNEDVK--VLITDWNMPEMNGLELVKKVR 58
Query: 70 --KIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
K + IIM+T G +A+V+ ALK+G YIVKPF Q + E++ VL +
Sbjct: 59 AEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEDVLGT 111
>emb|CAA64809.1| (X95564) expA [Erwinia carotovora]
Length = 218
Score = 69.9 bits (168), Expect = 9e-12
Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M + +VDD +R +++IL G +VVGEA G++AV+ + D+V MD+ MP +
Sbjct: 1 MISVFLVDDHELVRAGIRRILDDIKGLKVVGEACCGEDAVKWCRSNDVDVVLMDMSMPGI 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
G+ A ++I++ P+ K+IM+T + + +++GA GY+ K Q+VI + V
Sbjct: 61 GGLEATRKILRFMPDIKVIMLTIYTENPLPAKVMQAGAAGYVSKAAAPQEVICAIRAV 118
>gb|AAD45905.1|AF161328_2 (AF161328) response regulator CstA [Corynebacterium diphtheriae]
Length = 233
Score = 69.9 bits (168), Expect = 9e-12
Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 1 MARILVVDDAAFMRMLLKKIL-TQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M + +VDD +R + +L +Q+ V EA++GKEA+E D++ MD+ MP M
Sbjct: 1 MITVGLVDDQQLVRAGFRMVLDSQSDITVAWEANDGKEALENAANTPVDVILMDVQMPVM 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
DG+ A K I+ + + +II++T E V+ A++ GA G+++K + +I V V
Sbjct: 61 DGLEATKRIVATNTDTRIIVLTTFDSENYVVGAVEHGASGFLLKDTAPEDLIAAVRTV 118
>gb|AAD47845.1|AF171076_1 (AF171076) probable CheY1 protein [Vibrio cholerae]
Length = 119
Score = 69.9 bits (168), Expect = 9e-12
Identities = 42/123 (34%), Positives = 69/123 (55%), Gaps = 9/123 (7%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
MA++L VDD+ +R ++ L AG+EV A++G+EA+ K ++ + D++ D+ MP M
Sbjct: 1 MAKVLAVDDSISIRQMVSHTLQDAGYEVE-TAADGREALAKAQKARFDVIISDVNMPVMT 59
Query: 61 GITAVKEIM-----KIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVN 115
G VK + K P I+M+T K E GA G++VKPF + +++ +
Sbjct: 60 GFEFVKAVRMQSQYKFTP---ILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQ 116
Query: 116 RVL 118
RVL
Sbjct: 117 RVL 119
>pir||B82659 two-component system, regulatory protein XF1626 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9106678|gb|AAF84435.1|AE003989_12 (AE003989)
two-component system, regulatory protein [Xylella
fastidiosa]
Length = 252
Score = 69.9 bits (168), Expect = 9e-12
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 1 MARILVVDDAAFMRMLLKKIL-TQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPE 58
M RIL+ DD R L+ +L Q H EVV EA NG++ + ++L PDLV MDI MP
Sbjct: 1 MLRILIADDEPLARERLRVLLQAQMQHLEVVAEAENGEQVLHDCQRLNPDLVLMDIAMPG 60
Query: 59 MDGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
+DG+ + + + ++ TA G A + A A Y++KP +A+++ + RV
Sbjct: 61 IDGLETARYLRHLPACPAVVFCTAYGDHA--LSAFDVEAIDYLMKPVRAERLHAALKRV 117
>pir||D82380 chemotaxis protein CheY VCA1096 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9658542|gb|AAF96988.1| (AE004434)
chemotaxis protein CheY [Vibrio cholerae]
Length = 125
Score = 69.9 bits (168), Expect = 9e-12
Identities = 42/123 (34%), Positives = 69/123 (55%), Gaps = 9/123 (7%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
MA++L VDD+ +R ++ L AG+EV A++G+EA+ K ++ + D++ D+ MP M
Sbjct: 7 MAKVLAVDDSISIRQMVSHTLQDAGYEVE-TAADGREALAKAQKARFDVIISDVNMPVMT 65
Query: 61 GITAVKEIM-----KIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVN 115
G VK + K P I+M+T K E GA G++VKPF + +++ +
Sbjct: 66 GFEFVKAVRMQSQYKFTP---ILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQ 122
Query: 116 RVL 118
RVL
Sbjct: 123 RVL 125
>gb|AAC82663.1| (AF071105) GacA-like protein [Vibrio cholerae]
Length = 214
Score = 69.5 bits (167), Expect = 1e-11
Identities = 35/120 (29%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M + +VDD +R +++I+ G +V GEA +G+EAV+ + D++ MD+ MP +
Sbjct: 1 MISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRTNHADVILMDMNMPGI 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A K++++++P+ KII++T + + +++GA GY+ K +++ + V S
Sbjct: 61 GGLEATKKLLRVNPDIKIIVLTVHTENPFPTKVMQAGAAGYLTKGAAPDEMVNAIRIVHS 120
>pir||F82227 transcription regulator LuxR family VC1213 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655693|gb|AAF94372.1| (AE004201) transcriptional
regulator, LuxR family [Vibrio cholerae]
Length = 214
Score = 69.5 bits (167), Expect = 1e-11
Identities = 35/120 (29%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M + +VDD +R +++I+ G +V GEA +G+EAV+ + D++ MD+ MP +
Sbjct: 1 MISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRTNHADVILMDMNMPGI 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A K++++++P+ KII++T + + +++GA GY+ K +++ + V S
Sbjct: 61 GGLEATKKLLRVNPDIKIIVLTVHTENPFPTKVMQAGAAGYLTKGAAPDEMVNAIRIVHS 120
>dbj|BAB04091.1| (AP001508) two-component response regulator [Bacillus halodurans]
Length = 222
Score = 69.5 bits (167), Expect = 1e-11
Identities = 37/118 (31%), Positives = 65/118 (54%), Gaps = 1/118 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
MARIL+++D + +L+ L G+E A +G + +E ++ DLV +D+++PE+
Sbjct: 1 MARILIIEDEKKIARVLQLELEHEGYET-DAAFSGSDGLETFQAHAWDLVLLDVMLPELS 59
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G+ ++ I DP II++TA + L GA YI KPF+ ++++ V L
Sbjct: 60 GLEVLRRIRMTDPVTPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACL 117
>dbj|BAA14000.1| (D89625) adenylate cyclase [Anabaena sp.]
Length = 1155
Score = 69.1 bits (166), Expect = 1e-11
Identities = 40/119 (33%), Positives = 71/119 (59%), Gaps = 5/119 (4%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
ILVVDD +R + IL ++G++V A NG E K ++L P+L+ D++MP + G+
Sbjct: 799 ILVVDDNPDLRTYVSDILRRSGYQVY-TARNGYEGFSKVQELTPNLIVTDLMMPLVTGLE 857
Query: 64 AVKEIMKIDPNAK---IIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
++ +++ D K II++TA E +E+ + GA Y+ KPF ++++ EV +L+
Sbjct: 858 MIR-MVRNDEKVKGTPIILLTAKVDEETRIESTEHGADAYLAKPFNDRELLAEVRNLLA 915
>emb|CAB82846.1| (AJ277082) putative response regulator [Amycolatopsis mediterranei]
Length = 229
Score = 69.1 bits (166), Expect = 1e-11
Identities = 40/118 (33%), Positives = 67/118 (55%), Gaps = 2/118 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
MA +LVV+D A +R L+ L + GH VV A +G+ +E + +PDLV +D+++P MD
Sbjct: 1 MAEVLVVEDDAAVREGLQLALRRQGH-VVHTAESGELGIEVLVRHRPDLVVLDLMLPGMD 59
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G + + P IIM+TA + ++ L++GA Y+ KP + + + + VL
Sbjct: 60 GFETCRRMRAAGP-VPIIMLTARTDDFDIVAGLEAGADDYVAKPVEPRVLDARIRAVL 116
>gb|AAF61932.1| (AF230804) sigma-54 activator protein Act1 [Myxococcus xanthus]
Length = 562
Score = 69.1 bits (166), Expect = 1e-11
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
+LVVDD +R L ++L AG++V AS G +A+E D V +D+VMPEM G+
Sbjct: 15 VLVVDDEEAVRTFLSELLGSAGYQVRCAAS-GTQALEMLSGGSFDAVLLDVVMPEMSGLE 73
Query: 64 AVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
++ + A +I+++A+ + A+K GA Y+ KPF ++ + + R L +
Sbjct: 74 VLRRYQSMGGGAPVIVLSALAGADDAVRAMKMGASDYLAKPFGNDELQDALARALGT 130
>sp|P44895|CPXR_HAEIN TRANSCRIPTIONAL REGULATORY PROTEIN CPXR HOMOLOG
>gi|1074524|pir||C64159 transcription factor HI0837 -
Haemophilus influenzae (strain Rd KW20)
>gi|1573851|gb|AAC22495.1| (U32765) response regulator
(cpxR) [Haemophilus influenzae Rd]
Length = 227
Score = 68.7 bits (165), Expect = 2e-11
Identities = 40/118 (33%), Positives = 72/118 (60%), Gaps = 3/118 (2%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M+++L+VDD + LL +L G +V A+NG EA++K + LV +D++MP+++
Sbjct: 1 MSKLLLVDDDIELTELLSTLLELEGFDVE-TANNGLEALQKLNE-SYKLVLLDVMMPKLN 58
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
GI +KEI K+ N ++M+TA G++ + L+ GA + KPF +++I + +L
Sbjct: 59 GIETLKEIRKVS-NVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAIL 115
>dbj|BAA24951.1| (AB006362) similar to sln1p of S. cerevisiae [Candida albicans]
Length = 1377
Score = 68.7 bits (165), Expect = 2e-11
Identities = 42/124 (33%), Positives = 67/124 (53%), Gaps = 6/124 (4%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKP-----DLVTMDIVMP 57
R+LV +D + + ++ ++L Q G + A NG +A++ K+ DL+ MD+ MP
Sbjct: 1249 RVLVAEDNSVNQEVISRMLKQEGITNLTMACNGAKAIDFVKESIENNENFDLIFMDVQMP 1308
Query: 58 EMDGITAVKEIMK-IDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNR 116
E+DG+ A K I K + N II +TA E+ V E L SG G+I KP + + +
Sbjct: 1309 EVDGLKATKMIRKNLQYNKPIIALTAFADESNVKECLNSGMSGFITKPISKTNIKKVLVE 1368
Query: 117 VLSS 120
LS+
Sbjct: 1369 FLSN 1372
>pir||F83295 probable two-component response regulator PA2798 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948881|gb|AAG06186.1|AE004707_5 (AE004707) probable
two-component response regulator [Pseudomonas
aeruginosa]
Length = 394
Score = 68.7 bits (165), Expect = 2e-11
Identities = 37/118 (31%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 2 ARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
A +L++DD +R L L + +V+ +A NG + ++ ++ +PDLV D+ MP++DG
Sbjct: 6 ATLLIIDDDEVVRESLAAYLEDSNFKVL-QALNGLQGLQIFESEQPDLVICDLRMPQIDG 64
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIE-EVNRVL 118
+ ++ I + II+++ G + +EAL+ GA Y++KP + V+E V R L
Sbjct: 65 LELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122
>pir||I40540 vsrD protein - Pseudomonas solanacearum >gi|603069|gb|AAA66240.1|
(U18135) VsrD [Ralstonia solanacearum]
Length = 210
Score = 68.3 bits (164), Expect = 3e-11
Identities = 32/118 (27%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M R+L+ DD +R L++ L++ EV GEA++G+E +E+ + D+V +DI MP+
Sbjct: 1 MIRVLIADDHEIVRAGLRQFLSEERDIEVAGEAASGEEVMEQLRTEAFDVVVLDISMPDR 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
+GI +K + + P+ +++++ ++ + +++GA GY+ K ++++ + V
Sbjct: 61 NGIDTLKLVRQRHPDLPVLILSTFPEDQYAINLIRAGASGYLTKESAPDELVKAIRTV 118
>pir||H70705 probable phoP protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1550635|emb|CAB02400.1| (Z80226) phoP [Mycobacterium
tuberculosis]
Length = 247
Score = 68.3 bits (164), Expect = 3e-11
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 2 ARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
AR+LVVDD A + LL L G EV A+NG +A+++ ++ +PD V +D++MP MDG
Sbjct: 21 ARVLVVDDEANIVELLSVSLKFQGFEVY-TATNGAQALDRARETRPDAVILDVMMPGMDG 79
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
++ + +A + +TA + L G Y+ KPF ++V+ + +L
Sbjct: 80 FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL 136
>emb|CAB59609.1| (AL132662) putative response regulator [Streptomyces coelicolor
A3(2)]
Length = 238
Score = 68.3 bits (164), Expect = 3e-11
Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
MA +LVV+D +R L ++LT G+ V A G EA+ Q PD+V +D+ +P++D
Sbjct: 10 MASVLVVEDDPVIRAALIEVLTGHGY-AVKTAHQGFEALRDITQSPPDIVVLDLGLPDLD 68
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G+ ++ I I +++ TA E +++ L +GA Y+VKPF ++ + VL
Sbjct: 69 GLDVLRMIRGIS-RVPVLVATARDDETEIIRLLNAGADDYMVKPFSGGQLAARLAAVL 125
>gb|AAB38544.1| (L41661) srrB [Synechococcus sp.]
Length = 237
Score = 67.9 bits (163), Expect = 3e-11
Identities = 37/117 (31%), Positives = 67/117 (56%), Gaps = 2/117 (1%)
Query: 2 ARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
A+ILVVDD + +R LL + L++ G++V A +G A+ ++++ PDL+ +D+ +P+ +G
Sbjct: 4 AKILVVDDDSAVRTLLVRFLSRQGYQVEA-AIDGSSALAQFERFSPDLLILDVNLPDTNG 62
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
EI++ +I++T+ EA ++ GA YI KPF V + +L
Sbjct: 63 YQLC-EIVQKRTGVYVILLTSRDDEADILTGFAKGADDYITKPFSLMSVGARIAAIL 118
>gb|AAC44801.1| (U67869) SirA [Salmonella typhimurium] >gi|2992526|gb|AAC08300.1|
(U88651) SirA [Salmonella typhimurium]
Length = 218
Score = 67.9 bits (163), Expect = 3e-11
Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M +L+VDD +R +++IL G +VVGEA G++AV+ + D+V MD+ MP +
Sbjct: 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNAVDVVLMDMNMPGI 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
G+ A ++I + + K+IM+T + + +++GA GY+ K Q+V+ + V S
Sbjct: 61 GGLEATRKIARSTADIKVIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYS 120
>sp|O87717|CHEB_CAUCR PROTEIN-GLUTAMATE METHYLESTERASE >gi|3387366|emb|CAA07180.1|
(AJ006687) CheB [Caulobacter crescentus]
Length = 344
Score = 67.9 bits (163), Expect = 3e-11
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGH-EVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
R+LVVDD+A MR L+ L + EVVG A + EA K L PD+VT+DI MP M+G
Sbjct: 5 RVLVVDDSATMRSLISAALNRDPDIEVVGGAGDPFEARGMIKALNPDVVTLDIEMPNMNG 64
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKV-MEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
I +++IM++ P +++ T A++ + AL+ GA + KP A E + +++
Sbjct: 65 IDFLEKIMRLRPMPVVMVSTLTQAGAEMTLRALELGAVDCVGKPADATGTQEALAEIVA 123
>sp|P16574|BVGA_BORPE VIRULENCE FACTORS PUTATIVE POSITIVE TRANSCRIPTION REGULATOR BVGA
>gi|72616|pir||VZBRGP transcription regulator bvgA -
Bordetella pertussis >gi|95501|pir||S17943 transcription
regulator bvgA - Bordetella bronchiseptica
>gi|7428899|pir||S17945 transcription regulator bvgA -
Bordetella parapertussis >gi|39353|emb|CAA41251.1|
(X58355) bvgA product, put. positive regulator
[Bordetella bronchiseptica] >gi|39728|emb|CAA37123.1|
(X52948) bvgA product, put. positive regulator
[Bordetella parapertussis] >gi|144039|gb|AAA22969.1|
(M25401) BvgA positive transcription regulator (put.);
putative [Bordetella pertussis]
Length = 209
Score = 67.5 bits (162), Expect = 4e-11
Identities = 29/117 (24%), Positives = 64/117 (53%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
++L++DD +R ++ ++ + G EV+GE NG + ++ ++ P+LV +DI +P++DG+
Sbjct: 4 KVLIIDDHPVLRFAVRVLMEKEGFEVIGETDNGIDGLKIAREKIPNLVVLDIGIPKLDGL 63
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
+ + + +++++T L SGA G++ K +VI V++
Sbjct: 64 EVIARLQSLGLPLRVLVLTGQPPSLFARRCLNSGAAGFVCKHENLHEVINAAKAVMA 120
>sp|P14146|PHOP_SALTY VIRULENCE TRANSCRIPTIONAL REGULATORY PROTEIN PHOP
>gi|73045|pir||RGEBFT transcription regulator phoP -
Salmonella typhimurium >gi|154264|gb|AAA27187.1|
(M25241) PhoP protein [Salmonella typhimurium]
>gi|154266|gb|AAA27188.1| (M24424) phoP protein
[Salmonella typhimurium] >gi|7007369|emb|CAB75591.1|
(AJ272210) PhoP protein [Salmonella typhimurium]
Length = 224
Score = 67.5 bits (162), Expect = 4e-11
Identities = 36/118 (30%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M R+LVV+D A +R LK L +GH+V A + +EA + PD+ +D+ +P+ D
Sbjct: 1 MMRVLVVEDNALLRHHLKVQLQDSGHQV-DAAEDAREADYYLNEHLPDIAIVDLGLPDED 59
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G++ ++ D + ++++TA +E L SGA Y+ KPF ++V+ + ++
Sbjct: 60 GLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALM 117
>pir||D69172 sensory transduction regulatory protein - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621623|gb|AAB85054.1| (AE000837) sensory
transduction regulatory protein [Methanobacterium
thermoautotrophicum]
Length = 365
Score = 67.5 bits (162), Expect = 4e-11
Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 4 ILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDI-VMPEMDGI 62
+L+V+D A + LK+ L AG V+G G+ A+ +L+PD+V MD+ + EMDGI
Sbjct: 75 VLIVEDEAIIAADLKQKLENAGFRVLGVHDTGEGAIAAASELEPDVVIMDVYIRGEMDGI 134
Query: 63 TAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
A + I + +I +TA +A + L+S GY++KP +++ E+ VL +
Sbjct: 135 KAAERIQE-RYGIPVIYLTAYSDDATLSRILESEPYGYLLKPLNTEQLQAEIEVVLEN 191
>emb|CAC10110.1| (AL442165) putative two component system response regulator
[Streptomyces coelicolor]
Length = 237
Score = 67.5 bits (162), Expect = 4e-11
Identities = 40/118 (33%), Positives = 65/118 (54%), Gaps = 2/118 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
MA +LVV+D F+R L + LT A H V EA+ + + D+V +D+ +P++D
Sbjct: 4 MASVLVVEDDQFVRSALIRQLTDASH-TVRSVGTALEALREVAHFRFDVVILDLGLPDLD 62
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G A+K + I + +I+ TA EA+V+ L +GA Y+ KPF + + + VL
Sbjct: 63 GSEALKMLRGIT-DVPVIVATARDDEAEVVRLLNAGADDYLTKPFSVEHLSARMAAVL 119
>sp|P45671|NTRC_AZOBR NITROGEN ASSIMILATION REGULATORY PROTEIN >gi|2120003|pir||I39494
ntrC protein - Azospirillum brasilense
>gi|599602|emb|CAA86065.1| (Z37984) NtrC protein
[Azospirillum brasilense]
Length = 481
Score = 67.1 bits (161), Expect = 6e-11
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 2 ARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
A ILV DD +R +L + L + GHEV N + DL+ D+VMP+ +G
Sbjct: 4 ATILVADDDRAIRTVLTQALARLGHEV-RTTGNASTLWRWVADGQGDLIITDVVMPDENG 62
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
+ + I KI P+ +II+++A ++A + GA Y+ KPF ++++ V R L+S
Sbjct: 63 LDLIPRIKKIRPDLRIIVMSAQNTLITAVKAAERGAFEYLPKPFDLKELVSVVERALNS 121
>gb|AAB35496.1| (S80432) ntrC [Azospirillum brasilense, Yu62, Peptide, 480 aa]
Length = 480
Score = 67.1 bits (161), Expect = 6e-11
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 2 ARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDG 61
A ILV DD +R +L + L + GHEV N + DL+ D+VMP+ +G
Sbjct: 4 ATILVADDDRAIRTVLTQALARLGHEV-RTTGNASTLWRWVADGQGDLIITDVVMPDENG 62
Query: 62 ITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLSS 120
+ + I KI P+ +II+++A ++A + GA Y+ KPF ++++ V R L+S
Sbjct: 63 LDLIPRIKKIRPDLRIIVMSAQNTLITAVKAAERGAFEYLPKPFDLKELVSVVERALNS 121
>gb|AAC25080.1| (AF044495) CheY homolog [Agrobacterium tumefaciens]
Length = 129
Score = 67.1 bits (161), Expect = 6e-11
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 3 RILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGI 62
++L+VDD R+LL LTQ G + + A +G++ ++ +Q LV D MP+MDG+
Sbjct: 8 KVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIMEQQPHHLVISDFNMPKMDGL 67
Query: 63 TAVKEIMKIDPNAK---IIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVLS 119
+ + + +P K I++TA G A V +A + GA + KPF K+ + V
Sbjct: 68 GFLHAV-RANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKMRAAIEAVFG 126
Query: 120 S 120
S
Sbjct: 127 S 127
>gb|AAD10261.1| (AF036965) putative response regulator [Lactobacillus sakei]
Length = 237
Score = 67.1 bits (161), Expect = 6e-11
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
M ILVVDD + LL+ L Q H V A++G +A+ Q K D + +D+++P++D
Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQE-HFKVMTATDGAQALTMALQQKFDFIILDLMLPKLD 59
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRV 117
GI K+I + I+++TA E + L+ GA Y+ KPF +++I + +
Sbjct: 60 GIAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAI 116
>pir||G82975 probable two-component response regulator PA5364 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9951685|gb|AAG08749.1|AE004948_5 (AE004948) probable
two-component response regulator [Pseudomonas
aeruginosa]
Length = 300
Score = 67.1 bits (161), Expect = 6e-11
Identities = 42/121 (34%), Positives = 69/121 (56%), Gaps = 9/121 (7%)
Query: 5 LVVDDAAFMRMLLKKILTQAGHEV-VGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGIT 63
LVVDDA F+R L+KK L + + EA NG++A + + DL+ D MPEM G+
Sbjct: 7 LVVDDAPFIRDLMKKGLRDNFPGLHIEEAVNGRKAQQLLSRQNVDLILCDWEMPEMSGLE 66
Query: 64 AV-----KEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
+ +E +K P IM+T+ G + V++A+++G YI KPF +++ ++ + L
Sbjct: 67 LLTWCRAQENLKTTP---FIMVTSRGDKENVVQAIQAGVSDYIGKPFSNDQLVAKIKKAL 123
Query: 119 S 119
S
Sbjct: 124 S 124
>emb|CAB82844.1| (AJ277080) putative response regulator [Amycolatopsis mediterranei]
Length = 224
Score = 66.7 bits (160), Expect = 7e-11
Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 1 MARILVVDDAAFMRMLLKKILTQAGHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMD 60
MA IL+++D +R L+ L + GH+V A G++ + +++ P+LV +D+++P +D
Sbjct: 1 MAAILLIEDDPLVRRGLELALGRHGHDV-RTAETGEDGLRQFRSAPPELVVLDLMLPGID 59
Query: 61 GITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQKVIEEVNRVL 118
G + I P +IM+TA G + V+ L +GA Y+VKP + + + VL
Sbjct: 60 GFEVCRGIRAAGP-VPVIMLTARGDDFDVVGGLAAGADDYVVKPARPTVLDARIRAVL 116
>pir||F69600 two-component response regulator citT - Bacillus subtilis
>gi|2443239|dbj|BAA22310.1| (D86417) YflQ [Bacillus
subtilis] >gi|2633083|emb|CAB12588.1| (Z99108)
two-component response regulator [Bacillus subtilis]
Length = 226
Score = 66.3 bits (159), Expect = 1e-10
Identities = 34/110 (30%), Positives = 62/110 (55%), Gaps = 1/110 (0%)
Query: 1 MARILVVDDAAFMRMLLKKILTQA-GHEVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEM 59
M I + +D + + ++++ Q G +++G+A+N KE + K+ K DL+ +DI MP+
Sbjct: 1 MIHIAIAEDDFRVAQIHERLIKQLDGFKIIGKAANAKETLALLKEHKADLLLLDIYMPDE 60
Query: 60 DGITAVKEIMKIDPNAKIIMITAVGQEAKVMEALKSGAKGYIVKPFQAQK 109
G + +I P I++ITA + + EAL++G Y++KP A K
Sbjct: 61 LGTALIPDIRSRFPEVDIMIITAATETRHLQEALRAGIAHYLIKPVTADK 110
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.133 0.346
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34860417
Number of Sequences: 2977
Number of extensions: 1113951
Number of successful extensions: 5840
Number of sequences better than 1.0e-10: 331
Number of HSP's better than 0.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 242
Number of HSP's that attempted gapping in prelim test: 5449
Number of HSP's gapped (non-prelim): 337
length of query: 120
length of database: 189,106,746
effective HSP length: 60
effective length of query: 60
effective length of database: 153,197,526
effective search space: 9191851560
effective search space used: 9191851560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 159 (66.3 bits)