BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1332 (cheA) DE:chemotaxis histidine kinase (cheA)
(772 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75002 chemotaxis histidine kinase (chea) PAB1332 - Pyrococ... 1507 0.0
pir||G71160 probable histidine kinase (cheA) - Pyrococcus horiko... 1305 0.0
gi|11498645 chemotaxis histidine kinase (cheA) [Archaeoglobus fu... 436 e-121
sp|Q56310|CHEA_THEMA CHEMOTAXIS PROTEIN CHEA >gi|7442991|pir||D7... 434 e-120
gb|AAA96387.1| (U30501) CheA [Thermotoga maritima] 431 e-119
dbj|BAB06689.1| (AP001517) two-component sensor histidine kinase... 422 e-117
emb|CAB75700.1| (AJ272333) histidine kinase [Bacillus cereus] 401 e-110
gb|AAD01688.1| (AF021091) bifunctional chemotaxis protein CheF [... 397 e-109
pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal Tran... 394 e-108
pir||H64568 histidine kinase - Helicobacter pylori (strain 26695... 393 e-108
sp|P29072|CHEA_BACSU CHEMOTAXIS PROTEIN CHEA >gi|72602|pir||QRBS... 390 e-107
pir||H71864 histidine kinase - Helicobacter pylori (strain J99) ... 387 e-106
gb|AAF32417.1| (AF069392) chemotaxis protein CheA [Vibrio paraha... 374 e-102
emb|CAB75698.1| (AJ272331) histidine kinase [Bacillus cereus] 371 e-101
pir||A82123 chemotaxis protein CheA VC2063 [imported] - Vibrio c... 371 e-101
gb|AAC33468.1| (AF074950) CheA [Treponema denticola] 367 e-100
pir||B81447 chemotaxis histidine kinase (EC 2.7.3.-) Cj0284c [im... 367 e-100
sp|Q44737|CHEA_BORBU CHEMOTAXIS PROTEIN CHEA >gi|7463042|pir||D7... 353 4e-96
gb|AAB96835.1| (U28962) histidine kinase [Borrelia burgdorferi] 352 1e-95
pir||S54304 taxis sensor histidine kinase (EC 2.7.3.-) cheA [val... 342 8e-93
sp|Q48768|CHEA_LISMO CHEMOTAXIS PROTEIN CHEA >gi|620086|emb|CAA5... 338 2e-91
pir||T46614 chemotaxis protein cheA [imported] - Pseudomonas aer... 332 9e-90
gb|AAG19393.1| (AE005033) chemotaxis protein; CheA [Halobacteriu... 328 1e-88
gb|AAC08064.1| (AF031898) CheA [Pseudomonas putida] 328 1e-88
sp|Q52880|CHEA_RHIME CHEMOTAXIS PROTEIN CHEA >gi|2120798|pir||S6... 324 2e-87
gb|AAC25077.1| (AF044495) CheA homolog [Agrobacterium tumefaciens] 323 5e-87
gb|AAF67047.1|AF183382_7 (AF183382) sensor histidine kinase CheA... 318 1e-85
pir||C82380 chemotaxis protein CheA VCA1095 [imported] - Vibrio ... 315 1e-84
gb|AAA23573.1| (M34669) CheA protein (alt.) [Escherichia coli] 312 9e-84
gb|AAA23574.1| (M34669) CheA protein (alt.) [Escherichia coli] 312 9e-84
pir||T45017 chemotaxis histidine protein kinase cheAII [validate... 309 8e-83
sp|P07363|CHEA_ECOLI CHEMOTAXIS PROTEIN CHEA >gi|7428895|pir||QR... 309 1e-82
pir||C83624 probable two-component sensor PA0178 [imported] - Ps... 307 4e-82
sp|P09384|CHEA_SALTY CHEMOTAXIS PROTEIN CHEA >gi|79055|pir||A289... 302 1e-80
gb|AAC45555.1| (U61851) histidine kinase CheA [Treponema pallidum] 299 7e-80
pir||F70170 chemotaxis histidine kinase (cheA-1) homolog - Lyme ... 298 1e-79
sp|P96123|CHEA_TREPA CHEMOTAXIS PROTEIN CHEA >gi|7520968|pir||A7... 298 1e-79
gb|AAD45220.1|AF105017_1 (AF105017) histidine kinase [Treponema ... 298 1e-79
pir||E82205 chemotaxis protein CheA VC1397 [imported] - Vibrio c... 298 1e-79
gb|AAB71329.1| (U64519) CheAY [Rhodospirillum centenum (Rhodocis... 294 2e-78
emb|CAA07177.1| (AJ006687) CheA [Caulobacter crescentus] 289 6e-77
sp|Q53135|CHEA_RHOSH CHEMOTAXIS PROTEIN CHEA >gi|1075553|pir||S4... 277 3e-73
gb|AAB02651.1| (L39965) histidine kinase [Borrelia burgdorferi] 276 7e-73
sp|P18769|FRZE_MYXXA GLIDING MOTILITY REGULATORY PROTEIN >gi|945... 272 8e-72
pir||T30313 chemotaxis protein homolog - Pseudomonas aeruginosa ... 250 5e-65
pir||E83594 still frameshift probable component of chemotactic s... 250 5e-65
gb|AAC27632.1| (AF076485) defective in fruiting DifE [Myxococcus... 246 8e-64
pir||S75938 chemotaxis protein cheA (EC 2.7.-.-) - Synechocystis... 240 3e-62
pir||G83183 probable chemotaxis sensor/effector fusion protein P... 229 6e-59
pir||S75284 chemotaxis protein cheA homolog - Synechocystis sp. ... 220 4e-56
pir||F82618 chemotaxis-related protein kinase XF1952 [imported] ... 219 7e-56
pir||S76044 hypothetical protein slr0322 - Synechocystis sp. (st... 217 4e-55
sp|P21813|CHEA_ENTAE CHEMOTAXIS PROTEIN CHEA >gi|95552|pir||A323... 153 6e-36
gb|AAA23564.1| (M13463) cheA peptide [Escherichia coli] 148 2e-34
gb|AAF35254.1|AF060170_1 (AF060170) AS12 protein [Homo sapiens] 90 8e-17
pir||S76596 hypothetical protein - Synechocystis sp. (strain PCC... 70 8e-11
>pir||D75002 chemotaxis histidine kinase (chea) PAB1332 - Pyrococcus abyssi
(strain Orsay) >gi|5458972|emb|CAB50458.1| (AJ248288)
chemotaxis histidine kinase (cheA) [Pyrococcus abyssi]
Length = 772
Score = 1507 bits (3859), Expect = 0.0
Identities = 772/772 (100%), Positives = 772/772 (100%)
Query: 1 MVTLEDMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLK 60
MVTLEDMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLK
Sbjct: 1 MVTLEDMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLK 60
Query: 61 GTAATMGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSE 120
GTAATMGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSE
Sbjct: 61 GTAATMGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSE 120
Query: 121 GDIDVSDLFRRADEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPEKVEEGVEGKVYHIKVY 180
GDIDVSDLFRRADEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPEKVEEGVEGKVYHIKVY
Sbjct: 121 GDIDVSDLFRRADEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPEKVEEGVEGKVYHIKVY 180
Query: 181 FQKDAPLKGVRAFLILSDLEERGEVIWTNPGRDVIESGNLDKDVIEFKVSSDLPKEELEK 240
FQKDAPLKGVRAFLILSDLEERGEVIWTNPGRDVIESGNLDKDVIEFKVSSDLPKEELEK
Sbjct: 181 FQKDAPLKGVRAFLILSDLEERGEVIWTNPGRDVIESGNLDKDVIEFKVSSDLPKEELEK 240
Query: 241 VITRHPEVEKVEIIEEGEEEKGPEGEEKEYLIRVYFSPDAPLKGPRSYLILQDLESIGDI 300
VITRHPEVEKVEIIEEGEEEKGPEGEEKEYLIRVYFSPDAPLKGPRSYLILQDLESIGDI
Sbjct: 241 VITRHPEVEKVEIIEEGEEEKGPEGEEKEYLIRVYFSPDAPLKGPRSYLILQDLESIGDI 300
Query: 301 VQTNPNRGDIENGNLLEGKFFEVVLRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQEK 360
VQTNPNRGDIENGNLLEGKFFEVVLRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQEK
Sbjct: 301 VQTNPNRGDIENGNLLEGKFFEVVLRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQEK 360
Query: 361 KEEKAEEKKPQPPKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQIG 420
KEEKAEEKKPQPPKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQIG
Sbjct: 361 KEEKAEEKKPQPPKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQIG 420
Query: 421 ERLGDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVM 480
ERLGDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVM
Sbjct: 421 ERLGDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVM 480
Query: 481 EGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVV 540
EGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVV
Sbjct: 481 EGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVV 540
Query: 541 IIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRG 600
IIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRG
Sbjct: 541 IIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRG 600
Query: 601 VGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNIL 660
VGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNIL
Sbjct: 601 VGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNIL 660
Query: 661 ETIEVDPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTPQVERFPAIIVDHGAQKVAIG 720
ETIEVDPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTPQVERFPAIIVDHGAQKVAIG
Sbjct: 661 ETIEVDPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTPQVERFPAIIVDHGAQKVAIG 720
Query: 721 VDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLLGGGYSG 772
VDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLLGGGYSG
Sbjct: 721 VDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLLGGGYSG 772
>pir||G71160 probable histidine kinase (cheA) - Pyrococcus horikoshii
>gi|3256889|dbj|BAA29572.1| (AP000002) 766aa long
hypothetical histidine kinase (cheA) [Pyrococcus
horikoshii]
Length = 766
Score = 1305 bits (3339), Expect = 0.0
Identities = 674/775 (86%), Positives = 717/775 (91%), Gaps = 12/775 (1%)
Query: 1 MVTLEDMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLK 60
MVTLEDMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEK ELINQIFRDAHTLK
Sbjct: 1 MVTLEDMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKTELINQIFRDAHTLK 60
Query: 61 GTAATMGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSE 120
GTAATMGFMKLSETAHKMEN+FDAIRNSQ+ELTPE+VDLVLDFLDAI+AMVNNIEESG+E
Sbjct: 61 GTAATMGFMKLSETAHKMENIFDAIRNSQLELTPELVDLVLDFLDAIDAMVNNIEESGNE 120
Query: 121 GDIDVSDLFRRADEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPEKVEEGVEGKVYHIKVY 180
GD+DVSDLF RADEFL GG E KPEE KPKE E KEE+ E+V EGKVY+IKV
Sbjct: 121 GDVDVSDLFERADEFL-GGSKKEIKPEE-KPKE-AEKKEEKVAEEVPSA-EGKVYYIKVK 176
Query: 181 FQKDAPLKGVRAFLILSDLEERGEVIWTNPGRDVIESGNLDKDVIEFKVSSDLPKEELEK 240
FQKDAPLKGVRAFLILSDLEERGEVIWTNPGR++IE+GNL+ DV+EF++ S+ PKEELE
Sbjct: 177 FQKDAPLKGVRAFLILSDLEERGEVIWTNPGREIIENGNLEGDVVEFRIVSETPKEELET 236
Query: 241 VITRHPEVEKVEIIEEGEEEKGPEG--EEKEYLIRVYFSPDAPLKGPRSYLILQDLESIG 298
VI RHPEVE VEI+EE ++E+ E E KEY++RVYF PD PLKGPRSYLIL DLE IG
Sbjct: 237 VIKRHPEVESVEIVEEKKKEEAGEKAVEGKEYVVRVYFQPDTPLKGPRSYLILNDLEKIG 296
Query: 299 DIVQTNPNRGDIENGNLLEGKFFEVVLRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQ 358
+I+ TNP+R DIE GNL+E KFFEVVLRT E K KI +++KKHPDV NF +TE E E+K+
Sbjct: 297 EILSTNPSRQDIEEGNLIENKFFEVVLRTSESKEKISEILKKHPDVLNFTITEKEEEKKE 356
Query: 359 EKKEEKAEEKKPQPPKQPKKP-VIETPRVKISRIIKIDVGHLDKLMNLVGELVITKGRLE 417
EKKE K QPPKQPKKP +IETP+VKISR+IKIDVGHLDKLMNLVGELVITKGRLE
Sbjct: 357 EKKEAKK-----QPPKQPKKPPIIETPKVKISRVIKIDVGHLDKLMNLVGELVITKGRLE 411
Query: 418 QIGERLGDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVE 477
QIGERLGDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVE
Sbjct: 412 QIGERLGDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVE 471
Query: 478 FVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKN 537
FVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPR GRVELIAKREKN
Sbjct: 472 FVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRAGRVELIAKREKN 531
Query: 538 HVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVS 597
HVVIIVRDDGRGIDPEKVK+KA+ERGLITPEEAA+LSDEEAINLIFLPGFSTA+KVTDVS
Sbjct: 532 HVVIIVRDDGRGIDPEKVKRKAVERGLITPEEAANLSDEEAINLIFLPGFSTADKVTDVS 591
Query: 598 GRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPIN 657
GRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRV DETYAIPIN
Sbjct: 592 GRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVEDETYAIPIN 651
Query: 658 NILETIEVDPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTPQVERFPAIIVDHGAQKV 717
NILETIEVDPSILKT+GGKPVIVLRGEIIPV+MLHELFGLP PQV+RFPAIIVDHGAQKV
Sbjct: 652 NILETIEVDPSILKTVGGKPVIVLRGEIIPVIMLHELFGLPAPQVDRFPAIIVDHGAQKV 711
Query: 718 AIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLLGGGYSG 772
AIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLLGGGYSG
Sbjct: 712 AIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLLGGGYSG 766
>gi|11498645 chemotaxis histidine kinase (cheA) [Archaeoglobus fulgidus]
>gi|7442990|pir||H69379 chemotaxis histidine kinase
(cheA) homolog - Archaeoglobus fulgidus
>gi|2649550|gb|AAB90200.1| (AE001031) chemotaxis
histidine kinase (cheA) [Archaeoglobus fulgidus]
Length = 656
Score = 436 bits (1109), Expect = e-121
Identities = 247/627 (39%), Positives = 378/627 (59%), Gaps = 35/627 (5%)
Query: 171 EGKVYHIKVYFQKDAPLKGVRAFLILSDLEER-------------GEVIWTNPGRDV--- 214
+G V I F+ +KG+ F+ +LEE GE+ T DV
Sbjct: 32 KGDVDAINEIFRVAHTIKGMAGFMGYKNLEELCHKLESAMGKVRDGEIEVTEELIDVMLK 91
Query: 215 -IESGNLDKDVIEFKVSSDLPKEELEKVITRHPEVEKVEIIEEGEEEKGPEGEEKEYLIR 273
+++ D IE + S + ++ + +T E + E + + E K + +
Sbjct: 92 AVDAIGEMIDRIEDEDSDSVDVRDIIEALTMFMESREEEEVADRHELKPATANLR---VD 148
Query: 274 VYFSPDAPLKGPRSYLILQDLESIGDIVQTNPNRGDIENGNLLEGKFFEVVLRTKEDKSK 333
VY S D +K R+ L+++ L + ++V P+ D+E +G F VV D S
Sbjct: 149 VYISEDCVMKSVRAALVVEALSEVAEVVGVIPDESDMEK-ETFDGHF--VVYLNAPDASV 205
Query: 334 IVQLIKKHPDVENFVVTEAEAEEK---QEKKEEKAEEKKPQPPKQPKKPVIETPRVKIS- 389
+ I K +++ F V+ + E Q EE+AEEK + + +E ++
Sbjct: 206 VEDTISKIAEIDRFEVSPVDGETVEMGQAVSEEEAEEKAEGAARAETEAKVEKTEKRVDP 265
Query: 390 --------RIIKIDVGHLDKLMNLVGELVITKGRLEQIGERLGDRELFEALSTLSRLLTE 441
I++++ LD +MNLVGELVI+KGRL QI EL EA++ + + +T
Sbjct: 266 GRKDKKKLESIRVNISQLDTIMNLVGELVISKGRLLQIASEYDIPELKEAVAIMDKSITS 325
Query: 442 LQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVH 501
LQDEIM++R+ + VF+KFPRMVRDLARK+GK+++F MEG + E+DRT+L+++ D LVH
Sbjct: 326 LQDEIMQIRMVRVERVFSKFPRMVRDLARKLGKKIDFTMEGLETELDRTVLDEISDPLVH 385
Query: 502 LLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIE 561
L+RNAVDHGIE PEERV GK VGR++L A REKN+++I + DDGRG+D EK+K+KAIE
Sbjct: 386 LVRNAVDHGIETPEERVAAGKDEVGRIKLAAWREKNNIIIELEDDGRGLDVEKIKQKAIE 445
Query: 562 RGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQT 621
+G+++P EA S+S++E LIF PGFST ++ T+VSGRGVGMDVVK V+ + GS+ + +
Sbjct: 446 KGIVSPAEADSMSEDEIKMLIFSPGFSTKDEATEVSGRGVGMDVVKTTVERLGGSVRISS 505
Query: 622 EVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTIGGKPVIVL 681
E G GT + LP ++AI+++LL++V +ETYAIPI++++E + V K I G P +++
Sbjct: 506 EKGNGTRIRIHLPPTVAIVKSLLVKVANETYAIPISSVVEALYVGEDNWKVIHGNPFLIV 565
Query: 682 RGEIIPVVMLHELFGLPTPQVERFPAIIVDHGAQKVAIGVDELLHKRDIVIKSLGKFLSN 741
RG+++P L ELF + + ER IIV+ +K A+ D + +++IVIK L +L+
Sbjct: 566 RGKLVPAFKLRELFNVRNGRPEREVGIIVEKEGEKYALIADTIAEQQEIVIKPLTGYLAK 625
Query: 742 VRGFAGATILGDGSVVLIIDIGGLLGG 768
++GF+G TILGDG VV I+D+ LLGG
Sbjct: 626 IKGFSGVTILGDGRVVPILDVSSLLGG 652
Score = 122 bits (302), Expect = 2e-26
Identities = 78/271 (28%), Positives = 133/271 (48%), Gaps = 37/271 (13%)
Query: 5 EDMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAA 64
++M +Y EF+ +AR+ +D ++ + +EK + IN+IFR AHT+KG A
Sbjct: 3 DEMEEYKQEFIQEAREYLDVMNQNFIKVEK---------GDVDAINEIFRVAHTIKGMAG 53
Query: 65 TMGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDID 124
MG+ L E HK+E+ +R+ +IE+T E++D++L +DAI M++ IE+ S+ +D
Sbjct: 54 FMGYKNLEELCHKLESAMGKVRDGEIEVTEELIDVMLKAVDAIGEMIDRIEDEDSD-SVD 112
Query: 125 VSDLFRRADEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPEKVEEGVEGKVYHIKVYFQKD 184
V D+ F+ E + +EEV + E KP + VY +D
Sbjct: 113 VRDIIEALTMFM-----------ESREEEEVADRHELKPATAN-------LRVDVYISED 154
Query: 185 APLKGVRAFLILSDLEERGEVIWTNPGRDVIESGNLDKDVIEFKVSSDLPKEELEKVITR 244
+K VRA L++ L E EV+ P +E D + + + D +E I++
Sbjct: 155 CVMKSVRAALVVEALSEVAEVVGVIPDESDMEKETFDGHFVVYLNAPD--ASVVEDTISK 212
Query: 245 HPEVEKVEI-------IEEGEEEKGPEGEEK 268
E+++ E+ +E G+ E EEK
Sbjct: 213 IAEIDRFEVSPVDGETVEMGQAVSEEEAEEK 243
>sp|Q56310|CHEA_THEMA CHEMOTAXIS PROTEIN CHEA >gi|7442991|pir||D72346 chemotaxis sensor
histidine kinase CheA - Thermotoga maritima (strain
MSB8) >gi|4981225|gb|AAD35784.1|AE001741_17 (AE001741)
chemotaxis sensor histidine kinase CheA [Thermotoga
maritima]
Length = 671
Score = 434 bits (1103), Expect = e-120
Identities = 251/575 (43%), Positives = 365/575 (62%), Gaps = 33/575 (5%)
Query: 213 DVIESGNLDKDVIEFKVSS--DLPKEELEKVITRHPEVEKVEIIEEGEEEKGPEGEE--- 267
D+ E+ ++ D I+ SS + P E + T+ E K E E PE
Sbjct: 109 DIGENIDVFSDTIKSFASSGKEKPSEIKNETETKGEEEHKGESTSNEEVVVLPEEVAHVL 168
Query: 268 --------KEYLIRVYFSPDAPLKGPRSYLILQDLESIG-DIVQTNPNRGDIENGNLLEG 318
K + I+V LK R YL+ LE + ++V+T P+ +IE E
Sbjct: 169 QEARNKGFKTFYIKVILKEGTQLKSARIYLVFHKLEELKCEVVRTIPSVEEIE-----EE 223
Query: 319 KF---FEVVLRTKEDKSKIVQLIKKHPDVENFVVTEAEA---EEKQEKKEEKAEEKKPQP 372
KF E+ + + D K+ + + D+E ++ E A E EK+ EK E+ +
Sbjct: 224 KFENEVELFVISPVDLEKLSEALSSIADIERVIIKEVTAVTEESGAEKRTEKEEKTEKTE 283
Query: 373 PKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGERLGDRELFEAL 432
K +K VI S+ +++D+ LD LM+L+GELVI + R+ + ++ +EL E+L
Sbjct: 284 EKAERKKVI-------SQTVRVDIEKLDNLMDLMGELVIARSRILETLKKYNIKELDESL 336
Query: 433 STLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTIL 492
S LSR+ +LQ+ +M++R+ PI+ VFN+FPRMVRDLA+KM KEV F+M G D E+DRT +
Sbjct: 337 SHLSRITLDLQNVVMKIRMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFV 396
Query: 493 EKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDP 552
E++G+ L+HLLRNA+DHGIEP EER+ GKP +G + L A+ E N+VVI V DDGRGID
Sbjct: 397 EEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDK 456
Query: 553 EKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKS 612
EK+ +KAIE+GLI +AA+LSD+E +N +F+PGFST EKV++VSGRGVGMDVVK VV+S
Sbjct: 457 EKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVES 516
Query: 613 MNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKT 672
+NGSIS+++E KGT ++LP+++AIIQALL++V + YAIPI NI + + ++
Sbjct: 517 LNGSISIESEKDKGTKVTIRLPLTLAIIQALLVKVNNLVYAIPIANIDTILSISKEDIQR 576
Query: 673 IGGKPVIVLRGEIIPVVMLHELFGLP-TPQVERFPAIIVDHGAQKVAIGVDELLHKRDIV 731
+ + VIV+RGE+IPV L E+ + ++E A+IV G +K I VD+LL + DIV
Sbjct: 577 VQDRDVIVIRGEVIPVYRLWEVLQIEHKEELEEMEAVIVRVGNRKYGIVVDDLLGQDDIV 636
Query: 732 IKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
IKSLGK S V+ F+GA ILGDGS+ LII++ G++
Sbjct: 637 IKSLGKVFSEVKEFSGAAILGDGSIALIINVSGIV 671
Score = 130 bits (324), Expect = 5e-29
Identities = 90/287 (31%), Positives = 147/287 (50%), Gaps = 35/287 (12%)
Query: 7 MSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAATM 66
M +YL F+ + ++ + +L++ +L LEK E ELIN+ FR HTLKG A TM
Sbjct: 2 MEEYLGVFVDETKEYLQNLNDTLLELEK-------NPEDMELINEAFRALHTLKGMAGTM 54
Query: 67 GFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDIDVS 126
GF +++ H +EN+ D RNS+I++T +++D + +D I MV+ I GS+ +
Sbjct: 55 GFSSMAKLCHTLENILDKARNSEIKITSDLLDKIFAGVDMITRMVDKIVSEGSDDIGENI 114
Query: 127 DLFRRADEFLQGGKGAEKKPEEEKPKEEVEAKEEEK------------PEKVEEGVEG-- 172
D+F +D ++KP E K + E + +EE K PE+V ++
Sbjct: 115 DVF--SDTIKSFASSGKEKPSEIKNETETKGEEEHKGESTSNEEVVVLPEEVAHVLQEAR 172
Query: 173 ----KVYHIKVYFQKDAPLKGVRAFLILSDLEE-RGEVIWTNPGRDVIESGNLDKDVIEF 227
K ++IKV ++ LK R +L+ LEE + EV+ T P + IE + +V E
Sbjct: 173 NKGFKTFYIKVILKEGTQLKSARIYLVFHKLEELKCEVVRTIPSVEEIEEEKFENEV-EL 231
Query: 228 KVSSDLPKEELEKVITRHPEVEKV------EIIEEGEEEKGPEGEEK 268
V S + E+L + ++ ++E+V + EE EK E EEK
Sbjct: 232 FVISPVDLEKLSEALSSIADIERVIIKEVTAVTEESGAEKRTEKEEK 278
>gb|AAA96387.1| (U30501) CheA [Thermotoga maritima]
Length = 671
Score = 431 bits (1096), Expect = e-119
Identities = 250/575 (43%), Positives = 364/575 (62%), Gaps = 33/575 (5%)
Query: 213 DVIESGNLDKDVIEFKVSS--DLPKEELEKVITRHPEVEKVEIIEEGEEEKGPEGEE--- 267
D+ E+ ++ D I+ SS + P E + T+ E K E E PE
Sbjct: 109 DIGENIDVFSDTIKSFASSGKEKPSEIKNETETKGEEEHKGESTSNEEVVVLPEEVAHVL 168
Query: 268 --------KEYLIRVYFSPDAPLKGPRSYLILQDLESIG-DIVQTNPNRGDIENGNLLEG 318
K + I+V LK R YL+ LE + ++V+T P+ +IE E
Sbjct: 169 QEARNKGFKTFYIKVILKEGTQLKSARIYLVFHKLEELKCEVVRTIPSVEEIE-----EE 223
Query: 319 KF---FEVVLRTKEDKSKIVQLIKKHPDVENFVVTEAEA---EEKQEKKEEKAEEKKPQP 372
KF E+ + + D K+ + + D+E ++ E A E EK+ EK E+ +
Sbjct: 224 KFENEVELFVISPVDLEKLSEALSSIADIERVIIKEVTAVTEESGAEKRTEKEEKTEKTE 283
Query: 373 PKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGERLGDRELFEAL 432
K +K VI S+ +++D+ L LM+L+GELVI + R+ + ++ +EL E+L
Sbjct: 284 EKAERKKVI-------SQTVRVDIEKLGNLMDLMGELVIARSRILETLKKYNIKELDESL 336
Query: 433 STLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTIL 492
S LSR+ +LQ+ +M++R+ PI+ VFN+FPRMVRDLA+KM KEV F+M G D E+DRT +
Sbjct: 337 SHLSRITLDLQNVVMKIRMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFV 396
Query: 493 EKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDP 552
E++G+ L+HLLRNA+DHGIEP EER+ GKP +G + L A+ E N+VVI V DDGRGID
Sbjct: 397 EEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDK 456
Query: 553 EKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKS 612
EK+ +KAIE+GLI +AA+LSD+E +N +F+PGFST EKV++VSGRGVGMDVVK VV+S
Sbjct: 457 EKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVES 516
Query: 613 MNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKT 672
+NGSIS+++E KGT ++LP+++AIIQALL++V + YAIPI NI + + ++
Sbjct: 517 LNGSISIESEKDKGTKVTIRLPLTLAIIQALLVKVNNLVYAIPIANIDTILSISKEDIQR 576
Query: 673 IGGKPVIVLRGEIIPVVMLHELFGLP-TPQVERFPAIIVDHGAQKVAIGVDELLHKRDIV 731
+ + VIV+RGE+IPV L E+ + ++E A+IV G +K I VD+LL + DIV
Sbjct: 577 VQDRDVIVIRGEVIPVYRLWEVLQIEHKEELEEMEAVIVRVGNRKYGIVVDDLLGQDDIV 636
Query: 732 IKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
IKSLGK S V+ F+GA ILGDGS+ LII++ G++
Sbjct: 637 IKSLGKVFSEVKEFSGAAILGDGSIALIINVSGIV 671
Score = 131 bits (326), Expect = 3e-29
Identities = 96/320 (30%), Positives = 159/320 (49%), Gaps = 39/320 (12%)
Query: 7 MSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAATM 66
M +YL F+ + ++ + +L++ +L LEK E ELIN+ FR HTLKG A TM
Sbjct: 2 MEEYLGVFVDETKEYLQNLNDTLLELEK-------NPEDMELINEAFRALHTLKGMAGTM 54
Query: 67 GFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDIDVS 126
GF +++ H +EN+ D RNS+I++T +++D + +D I MV+ I GS+ +
Sbjct: 55 GFSSMAKLCHTLENILDKARNSEIKITSDLLDKIFAGVDMITRMVDKIVSEGSDDIGENI 114
Query: 127 DLFRRADEFLQGGKGAEKKPEEEKPKEEVEAKEEEK------------PEKVEEGVEG-- 172
D+F +D ++KP E K + E + +EE K PE+V ++
Sbjct: 115 DVF--SDTIKSFASSGKEKPSEIKNETETKGEEEHKGESTSNEEVVVLPEEVAHVLQEAR 172
Query: 173 ----KVYHIKVYFQKDAPLKGVRAFLILSDLEE-RGEVIWTNPGRDVIESGNLDKDVIEF 227
K ++IKV ++ LK R +L+ LEE + EV+ T P + IE + +V E
Sbjct: 173 NKGFKTFYIKVILKEGTQLKSARIYLVFHKLEELKCEVVRTIPSVEEIEEEKFENEV-EL 231
Query: 228 KVSSDLPKEELEKVITRHPEVEKV------EIIEEGEEEKGPEGEEKEYLIRVYFSPDAP 281
V S + E+L + ++ ++E+V + EE EK E EEK A
Sbjct: 232 FVISPVDLEKLSEALSSIADIERVIIKEVTAVTEESGAEKRTEKEEKTEKT----EEKAE 287
Query: 282 LKGPRSYLILQDLESIGDIV 301
K S + D+E +G+++
Sbjct: 288 RKKVISQTVRVDIEKLGNLM 307
>dbj|BAB06689.1| (AP001517) two-component sensor histidine kinase involved in
chemotaxis [Bacillus halodurans]
Length = 682
Score = 422 bits (1073), Expect = e-117
Identities = 266/777 (34%), Positives = 430/777 (55%), Gaps = 117/777 (15%)
Query: 8 SQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAATMG 67
S+YL+ F+ ++++ + ++++ +L LE + ++ +IFR AHTLKG AATMG
Sbjct: 4 SEYLEVFIDESQEHLQAINDNLLKLEVSPSD-------LSIVGEIFRSAHTLKGMAATMG 56
Query: 68 FMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDIDVSD 127
F L+ H MEN+ D IRN + LDA +++ + E+ V D
Sbjct: 57 FEDLAHLTHNMENVLDLIRNQK--------------LDATSEVLDVVFEA-------VDD 95
Query: 128 LFRRADEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPEKVEEGVEGKVYHIKVYFQKDAPL 187
L + GG G + + K V ++ EK E + G K H +P
Sbjct: 96 LEAMVGDIASGGDG-----KRDVTKVVVMLEQIEKGETPDAG---KAVHTP------SPA 141
Query: 188 KGVRAFLILSDLEERGEVIWTNPGRDVIESGNLDKDVIEFKVSSDLPKEELEKVITRHPE 247
G L LS G +IES + EF+++
Sbjct: 142 AGQ---LELS-------------GSSIIESYD------EFEMT----------------- 162
Query: 248 VEKVEIIEEGEEEKGPEGEEKEYLIRVYFSPDAPLKGPRSYLILQDLESIGDIVQTNPNR 307
++++ E+ + Y I V LK R +++ + LE +G+++++ P+
Sbjct: 163 -----VLDQSFEQG-----YQAYQIEVTLDEKTLLKAARVFMVFEVLEQVGEVIKSTPSA 212
Query: 308 GDIENGNLLEGKFFEVVLRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQEKKE----- 362
++E E F V L TK D ++ Q I K ++ + + + Q KE
Sbjct: 213 EELEEEKFDER--FLVTLLTKVDGEEVRQRILKVSEITAVDICSLDKQALQALKETQHTQ 270
Query: 363 -------EKAEEKKPQPPKQPKKPVIETPR----VKISRIIKIDVGHLDKLMNLVGELVI 411
EKAEE+ KK TP V++++ +++++ LD LMNL ELVI
Sbjct: 271 SDKQVDVEKAEEQTE------KKTATTTPSDKKGVEVNKTVRVNIERLDVLMNLFEELVI 324
Query: 412 TKGRLEQIGERLGDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARK 471
+GRLEQI L EL E + +SR+ +LQ+ I+ MR+ P+ +VFN+FPRMVR L+++
Sbjct: 325 DRGRLEQIASELNQNELNETVERMSRISGDLQEIILNMRMMPVEQVFNRFPRMVRSLSKE 384
Query: 472 MGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELI 531
+ K+V + GA+ E+DRTI++++GD LVHL+RN++DHGIE PE R GKP G V L
Sbjct: 385 LNKKVNLEIVGAETELDRTIIDEIGDPLVHLIRNSIDHGIETPEVRRAAGKPEEGTVILR 444
Query: 532 AKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAE 591
A N+V I + DDG GID +KV +KA+ G++T E+AA ++D + L+F PGFSTAE
Sbjct: 445 AFHSGNNVFIEIEDDGAGIDRDKVLQKALTNGVVTEEDAAKMNDSQVFQLLFAPGFSTAE 504
Query: 592 KVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDET 651
K+TD+SGRGVG+DVV+ +S+ G +SV +++GKG+ F ++LP++++II +L+ V DE
Sbjct: 505 KITDISGRGVGLDVVQSTFESIGGVVSVTSKLGKGSLFSIQLPLTLSIIDVMLVEVADEK 564
Query: 652 YAIPINNILETIEVDPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTP-QVERFPAIIV 710
YAIP+++I+ET V+ + + + + VI RG+++P+V L ++F +P + + ++++
Sbjct: 565 YAIPLSSIVETAIVNKNEVYSAHNQKVIDFRGKVVPLVFLSDIFAVPEKREADELYSLVI 624
Query: 711 DHGAQKVA-IGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
H +KVA + VD L+ + DIV+KSLG +L++V +GATILG+G V LI+D L+
Sbjct: 625 VHKGEKVAGLVVDSLIGQHDIVLKSLGDYLTDVFAISGATILGNGQVALIVDTNALI 681
>emb|CAB75700.1| (AJ272333) histidine kinase [Bacillus cereus]
Length = 672
Score = 401 bits (1019), Expect = e-110
Identities = 249/763 (32%), Positives = 422/763 (54%), Gaps = 104/763 (13%)
Query: 11 LDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAATMGFMK 70
L+ F ++ + + SL+ +L LE+ +++ +IFR AHT KG +A+M F +
Sbjct: 6 LNIFFEESEEHLQSLNENVLVLEQ-------NPADMDVVGEIFRSAHTFKGMSASMEFTE 58
Query: 71 LSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDIDVSDLFR 130
+++ HKMEN+ D IR+ I + +++D++ + +D +E MV ++++ G G+IDV+ +
Sbjct: 59 MADLTHKMENVLDEIRHGNIVVNADIIDVIFECIDNLEKMVADVQQGGM-GNIDVASTKQ 117
Query: 131 RADEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPEKVEEGVEGKVYHIKVYFQKDAPLKGV 190
+ + L G E P E +E + ++GV +V HI V ++ A LK V
Sbjct: 118 KLEALLNG--------NVETPTEHIEQNHID----TDDGVSHEV-HITV--EQQAILKAV 162
Query: 191 RAFLILSDLEERGEVIWTNPGRDVIESGNLDKDVIEFKVSSDLPKEELEKVITRHPEVEK 250
RA + + L+ G + T P + IE+ + F + +D EEL++V+ E+EK
Sbjct: 163 RAIMCIEALQNVGNIQKTAPSIEEIEADAFGFEFTVF-MDTDCSIEELKQVVLHVSEIEK 221
Query: 251 VEIIEEGEEEKGPEGEEKEYLIRVYFSPDAPLKGPRSYLILQDLESIGDIVQTNPNRGDI 310
VE +++GE I +++ S + Q
Sbjct: 222 VE-VKQGEP------------------------------ISKEVASKKVVTQ-------- 242
Query: 311 ENGNLLEGKFFEVVLRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQEKKEEKAEEKKP 370
EVV ++ + +V +K + N + A+ + K K E +
Sbjct: 243 -----------EVVQVEEKLQPAVVTQVKSPIEATNQPSSTMPAKSTTKTKNAKVENR-- 289
Query: 371 QPPKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGERLGDRELFE 430
+ RV++ +I ++LMN+ E VI +GR++++ + + ++EL E
Sbjct: 290 ------------SIRVQLEKI--------ERLMNMFEESVIERGRIDELAQTIQNKELIE 329
Query: 431 ALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRT 490
L+ L + ++Q+ ++ MR+ PI VFN+FPRMVR LA+ +GK+++ + G D EVD+
Sbjct: 330 HLNRLGDISKDIQNVLLNMRMVPIETVFNRFPRMVRMLAKDLGKKIDLQITGEDTEVDKI 389
Query: 491 ILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGI 550
+++++GD LVHL+RNA+DHG+E E+R GK G ++L A NHVVI + DDG GI
Sbjct: 390 VIDEIGDPLVHLIRNAIDHGVETVEKRRDAGKNETGTIKLEAFHSGNHVVIQITDDGNGI 449
Query: 551 DPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVV 610
+ KV +KAI+ G++T +A L+D E +LIF PGFSTAE V+D+SGRGVG+DVVK +
Sbjct: 450 NKGKVLEKAIKNGVVTEADANRLTDREVFDLIFQPGFSTAEVVSDLSGRGVGLDVVKHTI 509
Query: 611 KSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSIL 670
S+ G + + +E GKG+TF ++LP++++IIQ++L++ D+ YA+P+ NI+E I + +
Sbjct: 510 HSLGGHLIIDSEEGKGSTFRIELPLTLSIIQSMLVQTNDKRYALPLGNIVEAIRIKREDI 569
Query: 671 KTIGGKPVIVLRGEIIPVVMLHELFGLPTPQV-------ERFPAIIVDHGAQKVAIGVDE 723
+++ GK V+ R +II V L +FG T + P +IV + + + V+
Sbjct: 570 QSLQGKDVLNYRNQIIEVKHLSTVFGEKTVDEAFASYDGQMVPVLIVRNTHRSYGLIVNT 629
Query: 724 LLHKRDIVIKSLGKFLSNVRG-FAGATILGDGSVVLIIDIGGL 765
++ +R+IV+KSLG F + F+GATILGDG VVLI++ GL
Sbjct: 630 IIGQREIVLKSLGDFFAESSNYFSGATILGDGRVVLILNPEGL 672
>gb|AAD01688.1| (AF021091) bifunctional chemotaxis protein CheF [Helicobacter
pylori]
Length = 804
Score = 397 bits (1009), Expect = e-109
Identities = 201/463 (43%), Positives = 311/463 (66%), Gaps = 25/463 (5%)
Query: 325 LRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQEKKEEKAEEKKPQPPKQPKKPVIET- 383
+ +E +++I +L+ K + + E A++KQE K+E K+ + PK P ET
Sbjct: 191 MSAEEVEAEIERLLNKRQEADK----ERRAQKKQEAKQEVTPTKETPKTETPKAPKTETK 246
Query: 384 ----------PRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGERLGDR------- 426
P + + + +++DV LD LMNL+GELV+ K RL +I + +R
Sbjct: 247 AKADTEENKAPSIGVEQTVRVDVRRLDHLMNLIGELVLGKNRLIRIYSDVEERYDGEKFL 306
Query: 427 -ELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADI 485
EL + +S++S + T+LQ +M+ R+ P+ +VFNKFPRMVRDL+R++GK +E ++EG +
Sbjct: 307 EELNQVVSSISAVTTDLQLAVMKTRMQPVGKVFNKFPRMVRDLSRELGKSIELIIEGEET 366
Query: 486 EVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRD 545
E+D++I+E++GD L+H++RN+ DHGIEP EER +L KP G+V+L A E NH+VI + D
Sbjct: 367 ELDKSIVEEIGDPLIHIIRNSCDHGIEPLEERRRLNKPETGKVQLSAYNEGNHIVIKISD 426
Query: 546 DGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDV 605
DG+G+DP +K+KAIE+G+I+ +A +SD EA NLIF PGFSTA+ V++VSGRGVGMDV
Sbjct: 427 DGKGLDPVMLKEKAIEKGVISERDAEGMSDREAFNLIFKPGFSTAKVVSNVSGRGVGMDV 486
Query: 606 VKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEV 665
VK ++ +NG I + +EVG GTT LK+P+++AIIQALL+ V +E YAIP++++LET+ +
Sbjct: 487 VKTNIEKLNGIIEIDSEVGVGTTQKLKIPLTLAIIQALLVGVQEEYYAIPLSSVLETVRI 546
Query: 666 DPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTPQVERFPAIIVDHGA--QKVAIGVDE 723
+ T+ GK V+ LR E++ +V L ++F + +V G QK+ + VD
Sbjct: 547 SQDEIYTVDGKSVLRLRDEVLSLVRLSDIFKVDAILESNSDVYVVIIGLADQKIGVIVDY 606
Query: 724 LLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
L+ + ++VIKSLG +L N RG AGAT+ GDG + LI+D+G ++
Sbjct: 607 LIGQEEVVIKSLGYYLKNTRGIAGATVRGDGKITLIVDVGAMM 649
Score = 83.9 bits (204), Expect = 6e-15
Identities = 48/170 (28%), Positives = 95/170 (55%), Gaps = 16/170 (9%)
Query: 4 LEDMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTA 63
++D+ + +++FL +A + + L ++ LE E +L+N+IFR AHT+KG++
Sbjct: 1 MDDLEEIMEDFLIEAFEMNEQLDQDLVELEH-------NPEDLDLLNRIFRVAHTIKGSS 53
Query: 64 ATMGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGS---- 119
+ + L+ H ME++ + R +I++TP+++D+VL +D ++ ++ I ++GS
Sbjct: 54 SFLNLNILTHLTHNMEDVLNRARKGEIKITPDIMDVVLRSIDLMKTLLVTIRDTGSDTNN 113
Query: 120 --EGDID--VSDLFRRADEFLQGGK-GAEKKPEEEKPKEEVEAKEEEKPE 164
E +I+ V L + L+G K G + P++E +E E +EE E
Sbjct: 114 GKENEIEEAVKQLQAITSQNLEGAKEGTTEAPQKENKEENKEENKEENKE 163
>pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase >gi|6730097|pdb|1B3Q|A Chain A, Crystal
Structure Of Chea-289, A Signal Transducing Histidine
Kinase
Length = 379
Score = 394 bits (1001), Expect = e-108
Identities = 198/379 (52%), Positives = 283/379 (74%), Gaps = 1/379 (0%)
Query: 389 SRIIKIDVGHLDKLMNLVGELVITKGRLEQIGERLGDRELFEALSTLSRLLTELQDEIME 448
S+ +++D+ LD LM+L+GELVI + R+ + ++ +EL E+LS LSR+ +LQ+ +M+
Sbjct: 1 SQTVRVDIEKLDNLMDLMGELVIARSRILETLKKYNIKELDESLSHLSRITLDLQNVVMK 60
Query: 449 MRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVD 508
+R+ PI+ VFN+FPRMVRDLA+KM KEV F+M G D E+DRT +E++G+ L+HLLRNA+D
Sbjct: 61 IRMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAID 120
Query: 509 HGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPE 568
HGIEP EER+ GKP +G + L A+ E N+VVI V DDGRGID EK+ +KAIE+GLI
Sbjct: 121 HGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDES 180
Query: 569 EAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTT 628
+AA+LSD+E +N +F+PGFST EKV++VSGRGVGMDVVK VV+S+NGS+ +++E KGT
Sbjct: 181 KAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTK 240
Query: 629 FILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTIGGKPVIVLRGEIIPV 688
++LP+++AII ALL++V + YAIPI NI + + ++ + + VIV+RGE+IPV
Sbjct: 241 VTIRLPLTLAIICALLVKVNNLVYAIPIANIDTILSISKEDIQRVQDRDVIVIRGEVIPV 300
Query: 689 VMLHELFGLP-TPQVERFPAIIVDHGAQKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAG 747
L E+ + ++E A+IV G +K I VD+LL + DIVIKSLGK S V+ F+G
Sbjct: 301 YRLWEVLQIEHKEELEEMEAVIVRVGNRKYGIVVDDLLGQDDIVIKSLGKVFSEVKEFSG 360
Query: 748 ATILGDGSVVLIIDIGGLL 766
A ILGDGS+ LII++ G++
Sbjct: 361 AAILGDGSIALIINVSGIV 379
>pir||H64568 histidine kinase - Helicobacter pylori (strain 26695)
>gi|2313493|gb|AAD07457.1| (AE000555) histidine kinase
(cheA) [Helicobacter pylori 26695]
Length = 803
Score = 393 bits (1000), Expect = e-108
Identities = 202/466 (43%), Positives = 312/466 (66%), Gaps = 32/466 (6%)
Query: 325 LRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQEKKEEKAEEKKPQPPKQ-PKKPVIET 383
+ +E +++I +L+ K EA+ E + +KK+E +++ P K+ PK P ET
Sbjct: 191 MSAEEVEAEIERLLNKRQ--------EADKERRAQKKQEAKPKQEVTPTKETPKAPKTET 242
Query: 384 -------------PRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGERLGDR---- 426
P + + + +++DV LD LMNL+GELV+ K RL +I + +R
Sbjct: 243 KAKAKADTEENKAPSIGVEQTVRVDVRRLDHLMNLIGELVLGKNRLIRIYSDVEERYDGE 302
Query: 427 ----ELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEG 482
EL + +S++S + T+LQ +M+ R+ P+ +VFNKFPRMVRDL+R++GK +E ++EG
Sbjct: 303 KFLEELNQVVSSISAVTTDLQLAVMKTRMQPVGKVFNKFPRMVRDLSRELGKSIELIIEG 362
Query: 483 ADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVII 542
+ E+D++I+E++GD L+H++RN+ DHGIEP EER KL KP G+V+L A E NH+VI
Sbjct: 363 EETELDKSIVEEIGDPLIHIIRNSCDHGIEPLEERRKLNKPETGKVQLSAYNEGNHIVIK 422
Query: 543 VRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVG 602
+ DDG+G+DP +K+KAIE+G+I+ +A +SD EA NLIF PGFSTA+ V++VSGRGVG
Sbjct: 423 ISDDGKGLDPVMLKEKAIEKGVISERDAEGMSDREAFNLIFKPGFSTAKVVSNVSGRGVG 482
Query: 603 MDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILET 662
MDVVK ++ +NG I + +EVG GTT LK+P+++AIIQALL+ V +E YAIP++++LET
Sbjct: 483 MDVVKTNIEKLNGIIEIDSEVGVGTTQKLKIPLTLAIIQALLVGVQEEYYAIPLSSVLET 542
Query: 663 IEVDPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTPQVERFPAIIVDHGA--QKVAIG 720
+ + + T+ GK V+ LR E++ +V L ++F + +V G QK+ +
Sbjct: 543 VRISQDEIYTVDGKSVLRLRDEVLSLVRLSDIFKVDAILESNSDVYVVIIGLADQKIGVI 602
Query: 721 VDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
VD L+ + ++VIKSLG +L N RG AGAT+ GDG + LI+D+G ++
Sbjct: 603 VDYLIGQEEVVIKSLGYYLKNTRGIAGATVRGDGKITLIVDVGAMM 648
Score = 88.2 bits (215), Expect = 3e-16
Identities = 115/486 (23%), Positives = 198/486 (40%), Gaps = 81/486 (16%)
Query: 4 LEDMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTA 63
++D+ + +++FL +A + + L ++ LE E +L+N+IFR AHT+KG++
Sbjct: 1 MDDLQEIMEDFLIEAFEMNEQLDQDLVELEH-------NPEDLDLLNRIFRVAHTIKGSS 53
Query: 64 ATMGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDI 123
+ + L+ H ME++ + R +I++TP+++D+VL +D ++ ++ I ++GS+ +
Sbjct: 54 SFLNLNILTHLTHNMEDVLNRARKGEIKITPDIMDVVLRSIDLMKTLLVTIRDTGSDTNN 113
Query: 124 DVSDLFRRADEFLQG--GKGAEKKPEEEKPKEEVEAKEEEKPEKVEEGVEGKVYHIKVYF 181
+ A + LQ + E E + E KEE K E EE E K
Sbjct: 114 GKENEIEEAVKQLQAITSQNLESAKERTTEAPQKENKEETKEEAKEENKENKA------- 166
Query: 182 QKDAPLKGVRAFLILSD--LEERGEVIWTNPGRDVIES---------GNLDKDVIEFKVS 230
K A SD L + ++ + N + +E+ DK+ K
Sbjct: 167 ------KAPTAENTSSDNPLADEPDLDYANMSAEEVEAEIERLLNKRQEADKERRAQKKQ 220
Query: 231 SDLPKEEL--EKVITRHPEVE-KVEIIEEGEEEKGPE---------------------GE 266
PK+E+ K + P+ E K + + EE K P GE
Sbjct: 221 EAKPKQEVTPTKETPKAPKTETKAKAKADTEENKAPSIGVEQTVRVDVRRLDHLMNLIGE 280
Query: 267 ---EKEYLIRVYFSPDAPLKGPRSYLILQDLESIGDIVQTNPNRGDIENGNLLEGKFFEV 323
K LIR+Y + G + L + S V T+ ++ GK F
Sbjct: 281 LVLGKNRLIRIYSDVEERYDGEKFLEELNQVVSSISAVTTDLQLAVMKTRMQPVGKVFNK 340
Query: 324 VLRTKEDKS----KIVQLI--KKHPDVENFVVTEA----------EAEEKQEKKEEKAEE 367
R D S K ++LI + +++ +V E + E EE+ +
Sbjct: 341 FPRMVRDLSRELGKSIELIIEGEETELDKSIVEEIGDPLIHIIRNSCDHGIEPLEERRKL 400
Query: 368 KKPQPPKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVITKGRL-EQIGERLGDR 426
KP+ K E + I I D LD +M + E I KG + E+ E + DR
Sbjct: 401 NKPETGKVQLSAYNEGNHIVIK--ISDDGKGLDPVM--LKEKAIEKGVISERDAEGMSDR 456
Query: 427 ELFEAL 432
E F +
Sbjct: 457 EAFNLI 462
>sp|P29072|CHEA_BACSU CHEMOTAXIS PROTEIN CHEA >gi|72602|pir||QRBSCN two-component sensor
histidine kinase chemotactic signal modululator cheA -
Bacillus subtilis >gi|142685|gb|AAA22313.1| (M57894)
histidine kinase chemotactic signal modulator [Bacillus
subtilis] >gi|2634015|emb|CAB13516.1| (Z99112)
two-component sensor histidine kinase [Bacillus
subtilis]
Length = 671
Score = 390 bits (991), Expect = e-107
Identities = 217/578 (37%), Positives = 347/578 (59%), Gaps = 31/578 (5%)
Query: 212 RDVIESGNLDKDVIEFKVSSDLPKEELEKVITRHP----------EVEKVE--IIEEGEE 259
+ +I+ G+ +D+ E D+ E + P E ++ E +I+E EE
Sbjct: 101 QSIIDGGDGKRDISEVSAKLDVNGAHAESAASAEPAEAQSSASDWEYDEFERTVIQEAEE 160
Query: 260 EKGPEGEEKEYLIRVYFSPDAPLKGPRSYLILQDLESIGDIVQTNPNRGDIENGNLLEGK 319
+ K Y I++ + + LK R Y++ + L +G++ +T P+ +E + G
Sbjct: 161 QGF-----KRYEIKISLNENCMLKAVRVYMVFEKLNEVGEVAKTIPSAEVLETEDF--GT 213
Query: 320 FFEVVLRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQEKKEEKAEEKKPQPP-----K 374
F+V T + I QLI ++E+ V + EK EE +E P +
Sbjct: 214 DFQVCFLTHQSAEDIEQLINGVSEIEHVEVIQGAPLTSAEKPEESKQEDSPAAAVPANEE 273
Query: 375 QPKKPVIETPRVKIS----RIIKIDVGHLDKLMNLVGELVITKGRLEQIGERLGDRELFE 430
+ K+P + K S + I++++ LD LMNL ELVI +GRLEQI + L EL E
Sbjct: 274 KQKQPAKNDEQAKHSAGGSKTIRVNIDRLDSLMNLFEELVIDRGRLEQIAKELEHNELTE 333
Query: 431 ALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRT 490
+ ++R+ +LQ I+ MR+ P+ VFN+FPRM+R L +++ K++E + GA+ E+DRT
Sbjct: 334 TVERMTRISGDLQSIILNMRMVPVETVFNRFPRMIRQLQKELNKKIELSIIGAETELDRT 393
Query: 491 ILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGI 550
+++++GD LVHL+RN++DHGIE PE R++ GKP G+V L A NHV I V DDG G+
Sbjct: 394 VIDEIGDPLVHLIRNSIDHGIEAPETRLQKGKPESGKVVLKAYHSGNHVFIEVEDDGAGL 453
Query: 551 DPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVV 610
+ +K+ +K +ER +IT +EA +L D + LIF PGFSTA++++D+SGRGVG+DVVK +
Sbjct: 454 NRKKILEKPLER-VITEKEAETLEDNQIYELIFAPGFSTADQISDISGRGVGLDVVKNKL 512
Query: 611 KSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSIL 670
+S+ GS+SV++ G+G+ F ++LP++++II LLI++ +ET+AIPI++I+ET +D +
Sbjct: 513 ESLGGSVSVKSAEGQGSLFSIQLPLTLSIISVLLIKLEEETFAIPISSIIETAVIDRKDI 572
Query: 671 KTIGGKPVIVLRGEIIPVVMLHELFGLPTPQ--VERFPAIIVDHGAQKVAIGVDELLHKR 728
+ VI RG I+PVV L E F + + E+ I+V G + A VD + ++
Sbjct: 573 LQTHDREVIDFRGHIVPVVYLKEEFKIEDTRKDAEQLHIIVVKKGDKPTAFVVDSFIGQQ 632
Query: 729 DIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
++V+KSLG +L+NV +GATILGDG V LIID L+
Sbjct: 633 EVVLKSLGDYLTNVFAISGATILGDGEVALIIDCNALI 670
Score = 134 bits (335), Expect = 3e-30
Identities = 85/270 (31%), Positives = 145/270 (53%), Gaps = 18/270 (6%)
Query: 6 DMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAAT 65
DM+QYLD F+ ++++ + + + +L LEK + +L++ IFR AHTLKG +AT
Sbjct: 2 DMNQYLDVFIDESKEHLQTCNEKLLLLEK-------DPTDLQLVHDIFRAAHTLKGMSAT 54
Query: 66 MGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDIDV 125
MG+ L+ H +EN+ DAIRN +E+T + +D++ + LD +E MV +I + G +G D+
Sbjct: 55 MGYTDLAHLTHLLENVLDAIRNGDMEVTSDWLDILFEALDHLETMVQSIID-GGDGKRDI 113
Query: 126 SDLFRRADEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPE----KVEEGVEG--KVYHIKV 179
S++ + D G AE E + + A + E E ++E E K Y IK+
Sbjct: 114 SEVSAKLD---VNGAHAESAASAEPAEAQSSASDWEYDEFERTVIQEAEEQGFKRYEIKI 170
Query: 180 YFQKDAPLKGVRAFLILSDLEERGEVIWTNPGRDVIESGNLDKDVIEFKVSSDLPKEELE 239
++ LK VR +++ L E GEV T P +V+E+ + D + + E++E
Sbjct: 171 SLNENCMLKAVRVYMVFEKLNEVGEVAKTIPSAEVLETEDFGTD-FQVCFLTHQSAEDIE 229
Query: 240 KVITRHPEVEKVEIIEEGEEEKGPEGEEKE 269
++I E+E VE+I+ + EE +
Sbjct: 230 QLINGVSEIEHVEVIQGAPLTSAEKPEESK 259
>pir||H71864 histidine kinase - Helicobacter pylori (strain J99)
>gi|4155570|gb|AAD06564.1| (AE001527) histidine kinase
[Helicobacter pylori J99]
Length = 815
Score = 387 bits (983), Expect = e-106
Identities = 198/470 (42%), Positives = 311/470 (66%), Gaps = 28/470 (5%)
Query: 325 LRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQEKKEEKAEEKKPQPPKQPKK-----P 379
+ +E +++I +L+ K + + + + E++ + K+E A K+ + PK P
Sbjct: 191 MSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAKPKQEVAPAKETPKTETPKTETRKVP 250
Query: 380 VIET-------------PRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGERLGDR 426
ET P + + + +++DV LD LMNL+GELV+ K RL +I + +R
Sbjct: 251 KAETKAKAKADTEENKAPSIGVEQTVRVDVRRLDHLMNLIGELVLGKNRLIRIYSDVEER 310
Query: 427 --------ELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEF 478
EL + +S++S + T+LQ +M+ R+ P+ +VFNKFPRMVRDL+R++GK +E
Sbjct: 311 YDGEKFLEELNQVVSSISAVTTDLQLAVMKTRMQPVGKVFNKFPRMVRDLSRELGKSIEL 370
Query: 479 VMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNH 538
++EG + E+D++I+E++GD L+H++RN+ DHGIEP EER +L KP G+V+L A E NH
Sbjct: 371 IIEGEETELDKSIVEEIGDPLIHIIRNSCDHGIEPLEERRRLNKPETGKVQLSAYNEGNH 430
Query: 539 VVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSG 598
+VI + DDG+G+DP +K+KAIE+G+I+ +A S+SD EA NLIF PGFST + V++VSG
Sbjct: 431 IVIKISDDGKGLDPVMLKEKAIEKGVISERDAESMSDREAFNLIFKPGFSTRKVVSNVSG 490
Query: 599 RGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINN 658
RGVGMDVVK ++ +NG I + +EVG GTT LK+P+++AIIQALL+ V +E YAIP+++
Sbjct: 491 RGVGMDVVKTNIEKLNGIIEIDSEVGVGTTQKLKIPLTLAIIQALLVGVQEEYYAIPLSS 550
Query: 659 ILETIEVDPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTPQVERFPAIIVDHGA--QK 716
+LET+ + + T+ GK V+ LR E++ +V L ++F + +V G QK
Sbjct: 551 VLETVRISQDEIYTVDGKSVLRLRDEVLSLVRLSDIFKVDAILESNSDVYVVIIGLADQK 610
Query: 717 VAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
+ + VD L+ + ++VIKSLG +L N RG AGAT+ GDG + LI+D+G ++
Sbjct: 611 IGVIVDYLIGQEEVVIKSLGYYLKNTRGIAGATVRGDGKITLIVDVGAMM 660
Score = 89.7 bits (219), Expect = 1e-16
Identities = 121/488 (24%), Positives = 205/488 (41%), Gaps = 73/488 (14%)
Query: 4 LEDMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTA 63
++D+ + +++FL +A + + L ++ LE E +L+N+IFR AHT+KG++
Sbjct: 1 MDDLQEIMEDFLIEAFEMNEQLDQDLVELEH-------NPEDLDLLNRIFRVAHTIKGSS 53
Query: 64 ATMGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGS---- 119
+ + L+ H ME++ + R +I++TP+++D+VL +D ++ ++ I ++GS
Sbjct: 54 SFLNLNILTHLTHNMEDVLNRARKGEIKITPDIMDVVLRSIDLMKTLLVTIRDTGSDTNN 113
Query: 120 --EGDID--VSDLFRRADEFLQGGK---GAEKKPEEEKPKEEVE-AKEEEKPEKVEEGVE 171
E +I+ V L + L+G K G ++ PE+E KE E AKEE K K E
Sbjct: 114 GKENEIEEVVKKLQAITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKANKTPT-TE 172
Query: 172 GKVYHIKVYFQKDAPLKGVRAFLILSDLE----ERGEVIWTNPGRDVIESGNLDKDVIEF 227
+ + D + A + +++E +R E R + + K E
Sbjct: 173 NLTSDNPLADEPDLDYANMSAEEVEAEIERLLNKRQEA--DKERRAQKKQEDQAKPKQEV 230
Query: 228 KVSSDLPKEELEKVITRH-PEVE-KVEIIEEGEEEKGPE--------------------- 264
+ + PK E K TR P+ E K + + EE K P
Sbjct: 231 APAKETPKTETPKTETRKVPKAETKAKAKADTEENKAPSIGVEQTVRVDVRRLDHLMNLI 290
Query: 265 GE---EKEYLIRVYFSPDAPLKGPRSYLILQDLESIGDIVQTNPNRGDIENGNLLEGKFF 321
GE K LIR+Y + G + L + S V T+ ++ GK F
Sbjct: 291 GELVLGKNRLIRIYSDVEERYDGEKFLEELNQVVSSISAVTTDLQLAVMKTRMQPVGKVF 350
Query: 322 EVVLRTKEDKS----KIVQLI--KKHPDVENFVVTEA----------EAEEKQEKKEEKA 365
R D S K ++LI + +++ +V E + E EE+
Sbjct: 351 NKFPRMVRDLSRELGKSIELIIEGEETELDKSIVEEIGDPLIHIIRNSCDHGIEPLEERR 410
Query: 366 EEKKPQPPKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVITKGRL-EQIGERLG 424
KP+ K E + I I D LD +M + E I KG + E+ E +
Sbjct: 411 RLNKPETGKVQLSAYNEGNHIVIK--ISDDGKGLDPVM--LKEKAIEKGVISERDAESMS 466
Query: 425 DRELFEAL 432
DRE F +
Sbjct: 467 DREAFNLI 474
>gb|AAF32417.1| (AF069392) chemotaxis protein CheA [Vibrio parahaemolyticus]
Length = 744
Score = 374 bits (950), Expect = e-102
Identities = 247/772 (31%), Positives = 395/772 (50%), Gaps = 62/772 (8%)
Query: 11 LDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAATMGFMK 70
L +FL +A + ++ LS ++ LE + E +L+N IFR HT+KG A + +
Sbjct: 10 LQDFLIEAGEILELLSEQLVELE-------NNPEDKDLLNAIFRGFHTVKGGAGFLSLAE 62
Query: 71 LSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIE--ESGSEGDIDVSDL 128
L +T H EN+FD +RN Q +TP ++D +L LD + ++ E+ D + D
Sbjct: 63 LVDTCHGAENVFDVLRNGQRSVTPSLMDTMLKALDTVNTQFQAVQDREALEAADPALLDE 122
Query: 129 FRRA------DEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPEKVEEGVEGKVYHI-KVYF 181
R DE + PE P+ E + E G G V I + F
Sbjct: 123 LHRLCKPESEDEVATVVEEPIVTPEPVIPEPANEVPAAPAADITEAGSIGSVDEITQDEF 182
Query: 182 QKDAPLKGVRAFLILSDLEERGEVIWTNPGRDVIESG-NLDKDVIEFKVSSDLPKEELEK 240
+K +L +L +G + + V++ + D+ +E E+
Sbjct: 183 EK-----------LLDELHGKGAAPGASTSAPAAAAPVQASAPVLD---NGDITDDEFER 228
Query: 241 VITRHPEVEKVEIIEEGEEEKGPEGEEKEYLIRVYFSPDAPLKGPRSY-LILQDLESIGD 299
++ V + + P+ E S D+ L + +L +L G
Sbjct: 229 LLDELHGVGQSPSAATAAPVETPKAPEPAAPAVSAASGDSDLMTDEEFEKLLDELHGAG- 287
Query: 300 IVQTNPNRGDIENGNLLEGKFFEVVLRTKEDKSKIVQLIKKHPDVENFVV-TEAEAEEKQ 358
G LE E+ + TK + + K P + V T A A +
Sbjct: 288 ------------KGPTLE----ELDMATKPASALAPEAPKPAPVAQPAPVSTPASAPKPA 331
Query: 359 EKKEEKAEEKKPQPPKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQ 418
K EE K P KKP E +++D LD +MN+VGELV+ + RL
Sbjct: 332 AKPVAVKEEPKASAPAV-KKPQAEAT-------VRVDTSTLDTIMNMVGELVLVRNRLLS 383
Query: 419 IGERLGDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEF 478
+G + E+ +A++ L + +LQ +M+ R+ PI +VF +FPR+VRDLAR + K++
Sbjct: 384 LGLNSDNEEMSKAVANLDVVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARNLNKDIVL 443
Query: 479 VMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNH 538
M G + ++D+ ++E L D L+HL+RN+VDHGIE PE+RVK GK R G+V L A +E +H
Sbjct: 444 EMRGEETDLDKNLVEALADPLIHLVRNSVDHGIEMPEDRVKAGKSRTGKVILSASQEGDH 503
Query: 539 VVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSG 598
+ + + DDG G+DP K++ A++RG++ + AA LSD+E NLIF PGFS+ EK++D+SG
Sbjct: 504 IELAIVDDGGGMDPNKLRGIAVKRGMMDEDAAARLSDKECFNLIFAPGFSSKEKISDISG 563
Query: 599 RGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINN 658
RGVGMDVVK + ++NGSI + +E+GKGT +K+P+++AI+ L++ V +A+P+ +
Sbjct: 564 RGVGMDVVKTAINTLNGSIDIDSELGKGTKITIKVPLTLAILPTLMVGVGGHPFALPLAS 623
Query: 659 ILETIEVDPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTPQVER----FPAIIVDHGA 714
+ E +D S + G+ I++R + IP+ L +P+VE+ +IV G+
Sbjct: 624 VNEIFHLDLSRTNVVDGQLTIIVRDKSIPLFYLQNWLASKSPRVEQRIGHGHVVIVQIGS 683
Query: 715 QKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
Q+V VD L+ + ++VIK L L G AGATI DG + LI+D+ LL
Sbjct: 684 QRVGFVVDTLIGQEEVVIKPLDNLLQGTPGMAGATITSDGHIALILDVPDLL 735
>emb|CAB75698.1| (AJ272331) histidine kinase [Bacillus cereus]
Length = 672
Score = 371 bits (942), Expect = e-101
Identities = 247/769 (32%), Positives = 410/769 (53%), Gaps = 118/769 (15%)
Query: 11 LDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAATMGFMK 70
L+ F ++ + + SL+ +LTLE+ +++ +IFR AHT KG +A+M F +
Sbjct: 8 LNIFFEESEEHLQSLNENVLTLEQ-------NPTDMDVVGEIFRSAHTFKGMSASMEFTE 60
Query: 71 LSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDIDVSDLFR 130
+++ HKMEN+ D IR+ I + ++D++ + +D +E MV ++++ G G+IDV +
Sbjct: 61 MADLTHKMENVLDEIRHGNIVVHANIIDVIFECIDNLEKMVADVQQGGM-GNIDVVATKQ 119
Query: 131 RADEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPEKVEEGVEGKVYHIKVYFQKDAPLKGV 190
+ + L G E E VE + + V V HI V ++ A LK V
Sbjct: 120 KLEALLNG--------NAETSMEHVEQESINNDDAVSHEV-----HITV--EQQAILKAV 164
Query: 191 RAFLILSDLEERGEVIWTNPGRDVIESGNLDKDVIEFKVSSDLPKEELEKVITRHPEVEK 250
RA + + L+ G++ T P + IE+ + F +++D ++EL++V+ E+EK
Sbjct: 165 RAIMCIEALQNIGDIQKTVPSIEEIEADAFGFEFTVF-MNTDRSEQELKQVVLHVSEIEK 223
Query: 251 VEIIEEGEEEKGPEGEEKEYLIRVYFSPDAPLKGPRSYLILQDLESIGDIVQTNPNRGDI 310
V ++++GE L+ S + Q+ + +++Q +
Sbjct: 224 V-VVKQGES----------------------LQEVDSMVATQETTRVEEMIQPS------ 254
Query: 311 ENGNLLEGKFFEVVLRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQEKKEEKAEEKKP 370
VV + + Q P T++ A+ K K E ++
Sbjct: 255 ------------VVAQVEAPIETAKQPASTTP-------TKSTAKTKNAKGENRS----- 290
Query: 371 QPPKQPKKPVIETPRVKISRIIK------IDVGHLDKLMNLVGELVITKGRLEQIGERLG 424
I KI R++ I+ G +D+L + + +K +E + RLG
Sbjct: 291 ----------IRVQLEKIERLMNMFEESVIERGRIDEL----AQAIQSKELIEHL-NRLG 335
Query: 425 DRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGAD 484
D + ++Q+ ++ MR+ PI VFN+FPRMVR LA+ +GK+++ + G D
Sbjct: 336 D------------ISKDIQNVLLNMRMVPIETVFNRFPRMVRMLAKDLGKKIDLQITGED 383
Query: 485 IEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVR 544
EVD+ +++++GD LVHL+RNA+DHGIE E+R GK G ++L A NHVVI +
Sbjct: 384 TEVDKIVIDEIGDPLVHLIRNAIDHGIETVEKRRDAGKNETGTIKLEAFHSGNHVVIQIT 443
Query: 545 DDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMD 604
DDG GI K KAI+ G++T EA L+D E +LIF PGFSTAE V+D+SGRGVG+D
Sbjct: 444 DDGNGIHKGKEFVKAIKNGVVTESEANKLTDREVFDLIFQPGFSTAEVVSDLSGRGVGLD 503
Query: 605 VVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIE 664
VVK + S+ G + + +E GKG+TF ++LP++++IIQ++L++ D+ YA+P+ NI+E I
Sbjct: 504 VVKHTIHSLGGHLIIDSEEGKGSTFRIELPLTLSIIQSMLVQTNDKRYALPLGNIVEAIR 563
Query: 665 VDPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTP-------QVERFPAIIVDHGAQKV 717
+ +++I GK V+ R +II V L +FG T + + P +IV + +
Sbjct: 564 IKREDIQSIQGKDVLNYRDQIIEVKHLSTVFGEKTVDEAFESYESQMVPVLIVRNTHRSY 623
Query: 718 AIGVDELLHKRDIVIKSLGKFLSNVRG-FAGATILGDGSVVLIIDIGGL 765
+ V+ ++ +R+IV+KSLG F + F+GATILGDG VVLI++ GL
Sbjct: 624 GLIVNTIIGQREIVLKSLGDFFAESSNYFSGATILGDGRVVLILNPEGL 672
>pir||A82123 chemotaxis protein CheA VC2063 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9656609|gb|AAF95209.1| (AE004280)
chemotaxis protein CheA [Vibrio cholerae]
Length = 785
Score = 371 bits (942), Expect = e-101
Identities = 233/786 (29%), Positives = 399/786 (50%), Gaps = 49/786 (6%)
Query: 11 LDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAATMGFMK 70
L +FL +A + ++ LS ++ LE + E +L+N IFR HT+KG A + +
Sbjct: 10 LQDFLVEAGEILELLSEQLVELE-------NNPEDRDLLNAIFRGFHTVKGGAGFLALSE 62
Query: 71 LSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESG--SEGDIDVSDL 128
L ET H EN+FD +RN Q ++P ++D +L LD + ++E D ++ D
Sbjct: 63 LVETCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQPADPELLDE 122
Query: 129 FRRADEFLQGGKGAEKKPEEEKPKEEV--EAKEEEKPEKVEEGVEGKVYHIKVYFQKDAP 186
R + + + ++P+EE+ E EE + VEE V +
Sbjct: 123 LHRLSKPASEDEDEAAEAHFDEPEEELVEEIIEEVVEDVVEEAVPNVETEVTASASSGVI 182
Query: 187 LKGVRAFL-------ILSDLEERGEVIWTNPGRDVIESGNLDKDVIEFKVSSDLPKEELE 239
KG + +L +L +G+ + + V ++ D+ +E E
Sbjct: 183 DKGSIDDINEDEFEKLLDELHGKGKAPGAQSPQAPASAPAKAASVTNSDLNGDITDDEFE 242
Query: 240 KVITRHPEVEKVEIIEEGEEEKG--PEGEEKEYLIRVYFSPDAPLKGPRSYLILQDLESI 297
K++ + K IE P + + + AP G + ++ E +
Sbjct: 243 KLLDQLHGKGKGPSIETAAPAAPVTPSTPKATETPKPAAAKSAP--GGDDLMTDEEFEKL 300
Query: 298 GDIVQTNPNRGDIENGNLLEGKFFEVVLRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEK 357
D + + +E E+ + T+ S V K + T+ A+
Sbjct: 301 LDELHGSGKGPSVE----------ELEMATRPVASSPVSSDAKASAEASAPSTKPAAKPV 350
Query: 358 QEKKEEKAEEKKPQPPKQPKKPVIE-------------TPRVKISRIIKIDVGHLDKLMN 404
+ K K +P K P ++ + + +++D LD +MN
Sbjct: 351 AKPAAAKPAVAKEEPAKAPAPAAVKDSDESREVAAAGGAKKAQTESTVRVDTSTLDTIMN 410
Query: 405 LVGELVITKGRLEQIGERLGDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRM 464
+VGELV+ + RL +G D E+ +A++ L + +LQ +M+ R+ PI +VF +FPR+
Sbjct: 411 MVGELVLVRNRLLSLGLNSNDEEMSKAVANLDVVTADLQGAVMKTRMQPIKKVFGRFPRV 470
Query: 465 VRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPR 524
VRDLAR + KE++ + G + ++D+ ++E L D L+HL+RN+VDHGIE P+ER K GK R
Sbjct: 471 VRDLARSLNKEIDLELRGEETDLDKNLVEALADPLIHLVRNSVDHGIEMPDERAKNGKSR 530
Query: 525 VGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFL 584
G+V L A +E +H+ + + DDG G+DP+K++ A++RG++ + A L+++E NLIF+
Sbjct: 531 TGKVILSASQEGDHIQLAIVDDGAGMDPDKLRGIAVKRGIMDEDAANRLTNKECFNLIFM 590
Query: 585 PGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALL 644
PGFS+ EK+TD+SGRGVGMDVVK + ++NGSI + + +GKGT +K+P+++AI+ L+
Sbjct: 591 PGFSSKEKITDISGRGVGMDVVKTAINTLNGSIDIDSTMGKGTKITIKVPLTLAILPTLM 650
Query: 645 IRVMDETYAIPINNILETIEVDPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTPQVE- 703
+ V +A+P+ ++ E +D + G+ I++R + IP+ L +V+
Sbjct: 651 VGVAGHPFALPLASVNEIFHLDLRRTNVVDGQLTIIVREKSIPLFYLQNWLAPKKGKVQL 710
Query: 704 ---RFPAIIVDHGAQKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLII 760
+IV G+Q+V + VD L+ + ++VIK L K L G +GATI DG + LI+
Sbjct: 711 RQGHGHVVIVQIGSQRVGLVVDTLIGQEEVVIKPLDKLLQGTPGMSGATITSDGHIALIL 770
Query: 761 DIGGLL 766
D+ LL
Sbjct: 771 DVPDLL 776
>gb|AAC33468.1| (AF074950) CheA [Treponema denticola]
Length = 801
Score = 367 bits (933), Expect = e-100
Identities = 257/816 (31%), Positives = 431/816 (52%), Gaps = 90/816 (11%)
Query: 7 MSQYLD--------EFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHT 58
MS YLD +F ++A +++ L + +L +E+ ++ S I++IFR AHT
Sbjct: 1 MSDYLDINNEELLKDFFSEAEQQVEILESNVLVIEQNPEDRNS-------IDEIFRAAHT 53
Query: 59 LKGTAATMGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESG 118
LKG +AT+ ++LS+ H ME+L D IR+ +++T E VDL+L +D I+ M++ SG
Sbjct: 54 LKGGSATVEMLELSKFTHAMEDLLDEIRSGSVKVTGETVDLLLKSIDIIKLMLD-ARASG 112
Query: 119 SEGDIDVSDLFRRADEFLQGGKGAEKKPEEEKPKEEVEAKEE------------------ 160
S DVS + + F+ K +K + PK + A
Sbjct: 113 SIYSDDVSGIVNQLRSFIPA-KAEKKSSKASAPKVSIPASVSPVSAPKVQASASNLDIKD 171
Query: 161 --------EKPEKVEEGVEGKVYHIKVYFQKDAPLKGVRAFLILSDLEERGEVIWTNPGR 212
E E +++G + +Y + V F + + V + + L++ G V+ T P
Sbjct: 172 YFSEYEILELAETIQKGED--LYAVIVKFDESNLMNSVGGIQVFAALKDYGSVLKTVPDF 229
Query: 213 DVIESGNLDKDVIEFKVSSDLPKEELEKV-----ITRHPEVEKVEIIEEGEEEKGPEGEE 267
D + + VI F +SS + LEK +T E+++I ++K PE +
Sbjct: 230 DALYEDEFHETVIYF-LSSASDSKILEKAAFIGDVTLSASAERLDI-----KDKTPESPK 283
Query: 268 KEYLIRVYFSPDAPL----------KGPRSYLILQDLESIGDIVQTNPNRGDIENGNLLE 317
+P+A + + P Q + QT+P +G++L
Sbjct: 284 PAKAAPAQSAPEASVSEVKVSEKTEEKPVQESKEQPSKPEKKQSQTSPQGSGHSSGSIL- 342
Query: 318 GKFFEVVLRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQEKKEEKAEEKKPQPP--KQ 375
+ D ++I L+ V V+T+A + + E ++ + K
Sbjct: 343 ----------RVDANRIDYLLNL---VSETVITKASLNQSTIEFAELYDKFQNSSTIYKD 389
Query: 376 PKKPVIETPRVKISRIIK-IDVGHLDK-LMNLVGELVITKGRLEQIGERLGDRELFEALS 433
+ +++ + +I + D+ + + ++N L+ G + + + + +
Sbjct: 390 KTRRLLDKMPEYLEKIQQGYDINSIKQDVLNEYSSLLEVFGDFDSL-MKAAVTKFKSSSQ 448
Query: 434 TLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILE 493
L R+ ELQ+ +M++R+ PI+++F++FPR+VRDL+R + K V+ V+EG D E+D++++E
Sbjct: 449 NLGRISGELQEGVMKIRMVPISQIFSRFPRVVRDLSRDLNKNVQLVIEGEDTELDKSVVE 508
Query: 494 KLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPE 553
L D ++H +RN++DHG+E PE R LGKP G + L A E N +VI V DDG GID E
Sbjct: 509 DLLDPIMHCVRNSLDHGVESPEVRKGLGKPEQGILLLKASNEGNMIVIEVADDGHGIDVE 568
Query: 554 KVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSM 613
VK+KA+ERG++ P + SL+D EA L+F PGFST++ ++ VSGRGVG+DVVK ++ +
Sbjct: 569 AVKQKAVERGILHPNK--SLTDVEAFQLVFAPGFSTSKTISSVSGRGVGLDVVKTHIEKL 626
Query: 614 NGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTI 673
NG++ V++E GT FI+KLP+++AIIQ LLIRV DE Y+IPI +++E+ V P + I
Sbjct: 627 NGTVMVESEPNVGTRFIIKLPLTLAIIQGLLIRVGDEVYSIPITSVIESHRVKPDEINRI 686
Query: 674 GGKPVIVLRGEIIPVVMLHELFGLPTPQVERFP---AIIVDHGAQKVAIGVDELLHKRDI 730
V +R E+ ++ L+ LFG+ + + + ++V +KV + VD L+ + +
Sbjct: 687 DNYEVFNVRDEVYSLLRLNRLFGITSAETDDDGYNYIVVVGTEEKKVGLMVDSLIGEEAV 746
Query: 731 VIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
VIK L +N G AGA+ILGDGSV LIID+ LL
Sbjct: 747 VIKPLKDQFTNSPGIAGASILGDGSVSLIIDVAQLL 782
>pir||B81447 chemotaxis histidine kinase (EC 2.7.3.-) Cj0284c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6967760|emb|CAB72751.1| (AL139074) chemotaxis
histidine kinase [Campylobacter jejuni]
Length = 769
Score = 367 bits (932), Expect = e-100
Identities = 190/433 (43%), Positives = 291/433 (66%), Gaps = 17/433 (3%)
Query: 351 EAEAEEKQEKKEEKAEEK-------KPQPPKQPKKPVIETPRVKISRIIKIDVGHLDKLM 403
E +A Q+K+ A K KP + K P + + + I+++V LD LM
Sbjct: 187 EDQARRAQKKQTTNAAPKPTNNTANKPTESGEKKVPASGSNASSMDQTIRVEVKRLDHLM 246
Query: 404 NLVGELVITKGRLEQIGERLGDR--------ELFEALSTLSRLLTELQDEIMEMRLTPIA 455
NL+GELV+ K RL +I + + +R EL + +S LS ++T++Q +M+ R+ PIA
Sbjct: 247 NLIGELVLGKNRLLKIYDDVEERYEGEKFLEELNQVVSQLSIIITDVQLAVMKTRMQPIA 306
Query: 456 EVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPE 515
+VFNKFPR+VRDL+R++GK++E + G + E+D++I+E++GD ++H++RN+ DHG+E P
Sbjct: 307 KVFNKFPRVVRDLSRELGKQIELEITGEETELDKSIVEEIGDPIMHMIRNSCDHGVEDPA 366
Query: 516 ERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSD 575
R GKP G V+L A E NH+V+ + DDG+G+DP +K KAIE+ LIT EA ++D
Sbjct: 367 TRAANGKPEKGIVQLKAYNEGNHIVVEITDDGKGLDPNGLKAKAIEKNLITEREADQMTD 426
Query: 576 EEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPI 635
+EA LIF PGFSTA KVT+VSGRGVGMDVVK ++ +NG I + +E+GKG++F LK+P+
Sbjct: 427 KEAFALIFKPGFSTAAKVTNVSGRGVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPL 486
Query: 636 SMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTIGGKPVIVLRGEIIPVVMLHELF 695
++AIIQ+LL+ +E YAIP+ ++LET+ V + TI GK V+ LR E++ +V L ++F
Sbjct: 487 TLAIIQSLLVGTQEEFYAIPLASVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVF 546
Query: 696 GLP--TPQVERFPAIIVDHGAQKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGD 753
G+ ++ +++ K+ I VD L+ + +IVIKS+G +L N++G AGATI GD
Sbjct: 547 GVKQVLESGDQTYVVVIGVAESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGD 606
Query: 754 GSVVLIIDIGGLL 766
G V LIID+G ++
Sbjct: 607 GRVTLIIDVGAMM 619
Score = 94.4 bits (231), Expect = 4e-18
Identities = 48/162 (29%), Positives = 99/162 (60%), Gaps = 11/162 (6%)
Query: 4 LEDMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTA 63
+EDM + L++FL +A + ++ + + ++ LE S E EL+N+IFR AHT+KG++
Sbjct: 1 MEDMQEILEDFLVEAFELVEQIDHDLVELE-------SNPEDLELLNRIFRVAHTVKGSS 53
Query: 64 ATMGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDI 123
+ + F L++ H ME++ + R+ ++++TP+++D+VL+ +D ++ ++N+I ++G++ I
Sbjct: 54 SFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLNSIRDNGNDTAI 113
Query: 124 --DVSDLFRRADEFLQGGKGAEKKPEEEK--PKEEVEAKEEE 161
D+ + R +G EK P+ E+EA ++E
Sbjct: 114 GMDIEPICARLTAISEGESPVVATDSNEKSIPQAELEAPKQE 155
>sp|Q44737|CHEA_BORBU CHEMOTAXIS PROTEIN CHEA >gi|7463042|pir||D70183 chemotaxis
histidine kinase (cheA-2) homolog - Lyme disease
spirochete >gi|2688607|gb|AAC67024.1| (AE001168)
chemotaxis histidine kinase (cheA-2) [Borrelia
burgdorferi]
Length = 864
Score = 353 bits (896), Expect = 4e-96
Identities = 272/869 (31%), Positives = 437/869 (49%), Gaps = 141/869 (16%)
Query: 9 QYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAATMGF 68
+ L F +A++ +D L I++LE + ++ I++IFR AHTLKG++A++
Sbjct: 10 ELLGVFFEEAQNLVDILEENIMSLE-------DDPNNSDTIDEIFRAAHTLKGSSASLDM 62
Query: 69 MKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDIDVSDL 128
M+LS+ H +E++FDAIR+ ++ + ++VDL+L LD I+ M+ + G D+SDL
Sbjct: 63 MELSDFTHIVEDVFDAIRDGKVNINNDLVDLLLSSLDVIKEML-ALRIDGKVYLNDISDL 121
Query: 129 FRRADEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPEKVEE--GVEGKVYHIKVYFQKDAP 186
+ +FL K + + E E++ E G+ KV I V F ++
Sbjct: 122 KSKLKQFLVIDDQTFIKRFDGNSIKNNFCLSESDLEEIREGLGIGQKVLRISVVFNSNSN 181
Query: 187 LK----GVRAFLILSDLEERGEVIWTNPGRDVIESGNLDKDVIEFKVSSDLP-------- 234
+ G++ F IL +L G V+ T P + I K V + + SD+
Sbjct: 182 SEVENSGLKIFNILKNL---GSVLHTIPKYEQIIEDKFLKRVDYYLIYSDIEGVKKSLDS 238
Query: 235 --------------KEELEKVITRHPEVEKVEI---------IEEGEEEKG----PEGEE 267
KEEL+K+ E++ V++ + E+E +
Sbjct: 239 LNLIESYLVDEFNVKEELKKLADE--EIKDVDLDSNFVLNDNFDFTEDEISDLLLEVENQ 296
Query: 268 KEYLIRVYFSPDAPLKGPRSYLILQDLESIGDIVQTNPNRGDIENGNLLEGKFFEVV--- 324
K + +R+ F D P+ +LQ L+S+G I ++ P ++ LL KFF+ V
Sbjct: 297 KLFKVRLDFVKDNPMATISGLQMLQALKSLGKIFKSIP-----DSSELLADKFFDFVIYY 351
Query: 325 LRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQEKKEEKAEEKKPQPPKQPKKPVIETP 384
L + + I + I V +F + E + + ++ +E P + K + +
Sbjct: 352 LISNTSEESIAKKINLPDVVSHFEIKNVNLESLKSVRLKEDDE----APFKENKNIKKNS 407
Query: 385 RVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGERL-----------GDRELFEALS 433
+ ++ +I+ID +D ++NLV E VI+K QI + +E F+
Sbjct: 408 PISVN-LIRIDSKKIDYILNLVSEAVISKSSYNQINSEMITLFYNFNYFYDYQESFQRNF 466
Query: 434 TLSRLLT------ELQDEI-----------MEMRLTPIAEVFNKF--------------- 461
+ + L+DEI ME L I+E+ N F
Sbjct: 467 LIDLKIVFKDAGLTLEDEIESHINSLMSFKMEKALKDISELRNSFFRLLQNFKMTSGRLS 526
Query: 462 -------------------------PRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLG 496
R+VRDL++K+ K V MEG + E+D+++++ L
Sbjct: 527 RIITDLHESVLKTRMLPISNIFSRFTRVVRDLSKKLNKIVNLKMEGEETELDKSVIDDLV 586
Query: 497 DALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVK 556
D L+H +RN++DHG+E EERVK GK + G + L AK E N + I + DDG GIDP+ ++
Sbjct: 587 DPLMHCVRNSMDHGLETVEERVKRGKSKAGTIILRAKNEGNVISIEIEDDGIGIDPKVIR 646
Query: 557 KKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGS 616
+K IE+G I +E A SD E INLIF PGFSTA +VTD+SGRGVG+DVVK+ ++ +NG+
Sbjct: 647 RKLIEKGTI--KEDAIYSDFELINLIFAPGFSTAVQVTDLSGRGVGLDVVKKSIEKLNGT 704
Query: 617 ISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTIGG- 675
I V++E+G GT F +KLP+++ IIQ LL++ ETY IP+NN+LET + +K +
Sbjct: 705 ILVESEIGLGTIFKIKLPLTLVIIQGLLVKSGSETYVIPLNNVLETHRITEHDIKLLENY 764
Query: 676 KPVIVLRGEIIPVVMLHELFGLPTPQ--VERFPAIIVDHGAQKVAIGVDELLHKRDIVIK 733
V LR E+I V+ L +LF + +E+F I+V+ K+AI VD +L + D V+K
Sbjct: 765 HEVYNLRDEVISVLRLDKLFNITRDDSLIEKF-LIVVNTSNMKIAIVVDSILGEEDFVVK 823
Query: 734 SLGKFLSNVRGFAGATILGDGSVVLIIDI 762
+ S+ G GAT LG+G VVLIID+
Sbjct: 824 PIKDKFSSSAGIVGATTLGNGKVVLIIDV 852
>gb|AAB96835.1| (U28962) histidine kinase [Borrelia burgdorferi]
Length = 864
Score = 352 bits (893), Expect = 1e-95
Identities = 275/873 (31%), Positives = 440/873 (49%), Gaps = 149/873 (17%)
Query: 9 QYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAATMGF 68
+ L F +A++ +D L I++LE + ++ I++IFR AHTLKG++A++
Sbjct: 10 EILGVFFEEAQNLVDILEENIMSLE-------DDPNNSDTIDEIFRAAHTLKGSSASLDM 62
Query: 69 MKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDIDVSDL 128
M+LS+ H +E++FDAIR+ ++ + ++VDL+L LD I+ M+ + G D+SDL
Sbjct: 63 MELSDFTHIVEDVFDAIRDGKVNINNDLVDLLLSSLDVIKEML-ALRIDGKVYLNDISDL 121
Query: 129 FRRADEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPEKVEE--GVEGKVYHIKVYFQKDAP 186
+ +FL K + + E E++ E G+ KV I V F ++
Sbjct: 122 KSKLKQFLVIDDQTFIKRFDGNSIKNNFCLSESDLEEIREGLGIGQKVLRISVVFNSNSN 181
Query: 187 LK----GVRAFLILSDLEERGEVIWTNPGRDVIESGNLDKDVIEFKVSSDLP-------- 234
+ G++ F IL +L G V+ T P + I K V + + SD+
Sbjct: 182 HEVENGGLKIFNILKNL---GSVLHTIPKYEQIIEDKFLKRVDYYLIYSDIEGVKKSLDS 238
Query: 235 --------------KEELEKVITRHPEVEKVEI---------IEEGEEEKG----PEGEE 267
KEEL+K+ E++ V++ + E+E +
Sbjct: 239 SNLIESYLVDEFNVKEELKKLADE--EIKDVDLDSNFVLNDNFDFTEDEISDLLLEVENQ 296
Query: 268 KEYLIRVYFSPDAPLKGPRSYLILQDLESIGDIVQTNPNRGDIENGNLLEGKFFEVVL-- 325
K + +R+ F D P+ +LQ L+S+G I ++ P ++ LL KFF+ V+
Sbjct: 297 KLFKVRLDFVKDNPMATISGLQMLQALKSLGKIFKSIP-----DSSELLADKFFDFVIYY 351
Query: 326 ----RTKEDKSKIVQLIKKHPD-VENFVVTEAEAEEKQEKKEEKAEEKKPQPPKQPKKPV 380
++E SK + L PD V +F + E + + ++ +E P + K +
Sbjct: 352 LISNTSEESISKKINL----PDVVSHFEIKNVNLESLKSVRLKEDDE----APFKENKNI 403
Query: 381 IETPRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGERL-----------GDRELF 429
+ + ++ +I+ID +D ++NLV E VI+K QI + +E F
Sbjct: 404 KKNSPISVN-LIRIDSKKIDYILNLVSEAVISKSSYNQINSEMITLFYNFNYFYDYQESF 462
Query: 430 EALSTLSRLLT------ELQDEI-----------MEMRLTPIAEVFNKF----------- 461
+ + + L+DEI ME L I+E+ N F
Sbjct: 463 QRNFLIDLKIVFKDAGLTLEDEIESHINSLMSFKMEKALKDISELRNSFFRLLQNFKMTS 522
Query: 462 -----------------------------PRMVRDLARKMGKEVEFVMEGADIEVDRTIL 492
R+VRDL +K+ K V MEG + E+D++++
Sbjct: 523 GRLSRIITDLHESVLKTRMLPISNIFSRFTRVVRDLPKKLNKIVNLKMEGEETELDKSVI 582
Query: 493 EKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDP 552
+ L D L+H +RN++DHG+E EERVK GK + G + L AK E N + I + DDG GIDP
Sbjct: 583 DDLVDPLMHCVRNSMDHGLETVEERVKRGKSKAGTIILRAKNEGNVISIEIEDDGIGIDP 642
Query: 553 EKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKS 612
+ +++K IE+G I +E A SD E INLIF PGFSTA +VTD+SGRGVG+DVVK+ ++
Sbjct: 643 KVIRRKLIEKGTI--KEDAIYSDFELINLIFAPGFSTAVQVTDLSGRGVGLDVVKKSIEK 700
Query: 613 MNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKT 672
+NG+I V++E+G GT F +KLP+++ IIQ LL++ ETY IP+NN+LET + +K
Sbjct: 701 LNGTILVESEIGLGTIFKIKLPLTLVIIQGLLVKSGSETYVIPLNNVLETHRITEHDIKL 760
Query: 673 IGG-KPVIVLRGEIIPVVMLHELFGLPTPQ--VERFPAIIVDHGAQKVAIGVDELLHKRD 729
+ V LR E+I V+ L +LF + +E+F I+V+ K+AI VD +L + D
Sbjct: 761 LENYHEVYNLRDEVISVLRLDKLFNITRDDSLIEKF-LIVVNTSNMKIAIVVDSILGEED 819
Query: 730 IVIKSLGKFLSNVRGFAGATILGDGSVVLIIDI 762
V+K + S+ G GAT LG+G VVLIID+
Sbjct: 820 FVVKPIKDKFSSSAGIVGATTLGNGKVVLIIDV 852
>pir||S54304 taxis sensor histidine kinase (EC 2.7.3.-) cheA [validated] -
Halobacterium salinarum >gi|671100|emb|CAA57970.1|
(X82645) histidine kinase [Halobacterium salinarum]
Length = 668
Score = 342 bits (868), Expect = 8e-93
Identities = 237/773 (30%), Positives = 384/773 (49%), Gaps = 119/773 (15%)
Query: 7 MSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAATM 66
M YL+ F+ + + + SL+NA+L LE S+ E +++IFR AHTLKG M
Sbjct: 1 MDDYLEAFVREGEEHVTSLNNALLELE-------SDPGNEEAMDEIFRTAHTLKGNFGAM 53
Query: 67 GFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDIDVS 126
GF S D A+E +++ + + E D
Sbjct: 54 GFEDAS-----------------------------DLAHAVEDLLDEMRQGNLEVTSD-- 82
Query: 127 DLFRRADEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPEKVEEGVEGKVYHIKVYFQKDAP 186
R D +G G E +E++A + V+ V G +
Sbjct: 83 ----RMDRIFEGIDGIEAC------LDEIQATGD-----VDRDVTGTI------------ 115
Query: 187 LKGVRAFLILSDLEERGEVIWTNPGRDVIESGNLDKDVIEFKVSSDLPKEELEKVITRHP 246
+ VRA L D G T+ G +G+ D D TR
Sbjct: 116 -ESVRAVLDEVD-GHGGSGTTTSSGDAGSPAGDGDVDA------------------TRVV 155
Query: 247 EVEKVEIIEEGEEEKGPEGEEKEYLIRVYFSPDAPLKGPRSYLILQDLESIGDIVQTNPN 306
+ + ++ +E+ Y I + D+ +KG +L++ D++ P+
Sbjct: 156 DADTIDAVED-----------PVYHIHIDMG-DSQMKGVDGMFVLEEATEAFDLLGAEPS 203
Query: 307 RGDIENGNLLEGKFFEVVLRTKEDKSKIVQLIKKHPDVENFVVTEA-------------E 353
I +G +G FE+V+ T D+ + + P + + VT E
Sbjct: 204 PDAINDGEYGDG--FELVVATPSDE--VSDTVAAFPKLSDATVTAVGDDEHAPDADSGTE 259
Query: 354 AEEKQEKKEEKAEEKKPQPPKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVITK 413
A+ + + A I+ +I + ++DV LD+L LV +LV T+
Sbjct: 260 ADASADDDADDAGTTADSGSSSGGSSAIDNTDTEIQSV-RVDVDQLDELHGLVEQLVTTR 318
Query: 414 GRLEQIGERLGDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMG 473
+L + G DRE+ + L L ++ + LQD +M+MRL P+ ++ KFPR+VRDLAR+
Sbjct: 319 IKLRR-GMEESDREVLDELDELDKITSSLQDTVMDMRLVPMKKIVGKFPRLVRDLAREQD 377
Query: 474 KEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAK 533
K+++FV+EG D+E+DRTIL ++ D L+HLLRNAVDHGIE P R GK R G + L A+
Sbjct: 378 KDIDFVVEGDDVELDRTILTEISDPLMHLLRNAVDHGIEKPAVREDNGKDREGTITLSAE 437
Query: 534 REKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKV 593
R+++HV+I VRDDG GID + +++KAIE+G+ T EE + D++ +L+F PGFST ++V
Sbjct: 438 RDRDHVLIQVRDDGAGIDHDTMREKAIEKGVKTREEVQDMPDDDVEDLVFHPGFSTNDEV 497
Query: 594 TDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYA 653
TDVSGRGVGMDVV++ V ++GS+SV + G+GTTF + LP+++AI++ L + E Y
Sbjct: 498 TDVSGRGVGMDVVRDTVTRLDGSVSVDSTPGEGTTFTMTLPVTVAIVKVLFVESGGEEYG 557
Query: 654 IPINNILETIEVDPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTPQVERFPAII-VDH 712
IPI + E + +K++ G+ VI + P+V L + +P ++ +
Sbjct: 558 IPIKTVDEISRM--KSVKSVDGEEVITYDETVYPLVRLGDALNVPDETRNGDGMLVRIRD 615
Query: 713 GAQKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGL 765
++VA+ D++ + ++V+K LS + G +GA +LG+G VV I+D+ L
Sbjct: 616 SERQVAVHCDDVRGQEEVVVKPFEGILSGIPGLSGAAVLGEGDVVTILDVATL 668
>sp|Q48768|CHEA_LISMO CHEMOTAXIS PROTEIN CHEA >gi|620086|emb|CAA53765.1| (X76170) cheA
[Listeria monocytogenes]
Length = 618
Score = 338 bits (857), Expect = 2e-91
Identities = 182/498 (36%), Positives = 307/498 (61%), Gaps = 18/498 (3%)
Query: 267 EKEYLIRVYFSPDAPLKGPRSYLILQDLESIGDIVQTNPNRGDIENGNLLEGKFFEVVLR 326
EK Y I++ A LK R+ + L+ L +G I +T P+R IE + FEVVL
Sbjct: 134 EKTYRIQIQIEEAAILKAVRAVMCLERLAEMGIISETTPDREAIELEEFEQS--FEVVLE 191
Query: 327 TKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQEKKEEKAEEKKPQPPKQPKKPVIETPRV 386
+ + K +I ++ ++E VTE E ++ Q + KK +T +
Sbjct: 192 SAQTKEEIEAVVLDISEIEKVTVTE--------------EVEEVQVIEPIKKAAKQTTKR 237
Query: 387 KISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGERLGDRELFEALSTLSRLLTELQDEI 446
++ I++ + ++KLMN+ E VI + R+++I E+ ++EL E L S + E+Q+ +
Sbjct: 238 LENKTIRVQLEKIEKLMNVFEESVIERARIDEIAEKTNNKELMEHLGRFSSISKEIQNGL 297
Query: 447 MEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNA 506
+ MR+ P+ VFN+FP+MVR LA+++GK+++ V+EGAD EVD+ +++++GD LVHL+RN+
Sbjct: 298 LNMRMVPVDSVFNRFPKMVRTLAKELGKKIDLVIEGADTEVDKIVIDEIGDPLVHLIRNS 357
Query: 507 VDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLIT 566
VDHG E E R K GK + L A N+VVI + DDG GI+ KV +KAI + ++T
Sbjct: 358 VDHGAETVEVRRKNGKNETATINLKAFHSGNNVVIEIADDGAGINKRKVLEKAIAKNVVT 417
Query: 567 PEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKG 626
E+ ++D E +L+F GFSTA++V+D+SGRGVG+DVV+ + + G ISV++ G
Sbjct: 418 RAESTKMTDAEIFDLLFDSGFSTADQVSDLSGRGVGLDVVRNTILKIGGKISVESSENAG 477
Query: 627 TTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTIGGKPVIVLRGEII 686
+TF +++P++++IIQ++L+ + YA+P+ N+ E I ++P+ ++ + GK +I R II
Sbjct: 478 STFRIEIPLTLSIIQSMLVATSERRYAVPLANVAEAITINPADIQHVHGKDLINYRETII 537
Query: 687 PVVMLHELF-GLPTPQVERFPAIIVDHGAQKVAIGVDELLHKRDIVIKSLGKFLSNVR-G 744
V+ L E F P + ++V + + + + +++ +R+IV+K+LG F S +
Sbjct: 538 EVLDLGECFHETPLNDTDELLLLVVKNAKRTFGLIIKDIIGQREIVLKTLGGFFSESQIA 597
Query: 745 FAGATILGDGSVVLIIDI 762
F+GATILGDG VVLI+++
Sbjct: 598 FSGATILGDGRVVLILNL 615
Score = 125 bits (310), Expect = 2e-27
Identities = 79/249 (31%), Positives = 129/249 (51%), Gaps = 34/249 (13%)
Query: 11 LDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAATMGFMK 70
LD F+ +A + + +L++ +L LEK G +L+++IFR AHT KG +ATMGF +
Sbjct: 6 LDLFIEEASEHLQALNDNLLQLEKDPTNG-------QLVSEIFRSAHTFKGMSATMGFQQ 58
Query: 71 LSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDIDVSDLFR 130
+++ H MEN+ D +RN+++ +T +VD++ +E MV++I+ G +G D+S
Sbjct: 59 VADLTHAMENVLDEVRNNRLAVTEHLVDIIFTCTSHLETMVSDIQH-GGQGAADISKTVA 117
Query: 131 RADEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPEKVEEGVEGKVYHIKVYFQKDAPLKGV 190
+ L P++E + E K Y I++ ++ A LK V
Sbjct: 118 DLEALLH-------------PEQETDLAVE------------KTYRIQIQIEEAAILKAV 152
Query: 191 RAFLILSDLEERGEVIWTNPGRDVIESGNLDKDVIEFKVSSDLPKEELEKVITRHPEVEK 250
RA + L L E G + T P R+ IE ++ E + S KEE+E V+ E+EK
Sbjct: 153 RAVMCLERLAEMGIISETTPDREAIELEEFEQS-FEVVLESAQTKEEIEAVVLDISEIEK 211
Query: 251 VEIIEEGEE 259
V + EE EE
Sbjct: 212 VTVTEEVEE 220
>pir||T46614 chemotaxis protein cheA [imported] - Pseudomonas aeruginosa
>gi|11352362|pir||F83463 probable two-component sensor
PA1458 [imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|3721570|dbj|BAA33549.1| (AB012767) CheA [Pseudomonas
aeruginosa] >gi|9947410|gb|AAG04847.1|AE004575_6
(AE004575) probable two-component sensor [Pseudomonas
aeruginosa]
Length = 753
Score = 332 bits (842), Expect = 9e-90
Identities = 162/405 (40%), Positives = 261/405 (64%), Gaps = 9/405 (2%)
Query: 364 KAEEKKPQPPKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGERL 423
KA +P P +P ET +++D LD++MN+VGELV+ + RL ++G
Sbjct: 349 KAAAARPAAPDRPAASEAETT-------VRVDTARLDEIMNMVGELVLVRNRLVRLGLNS 401
Query: 424 GDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGA 483
GD + +A++ L + +LQ +M+ R+ PI +VF +FPR+VRDLAR M KE+ + G
Sbjct: 402 GDEAMAKAVANLDVVTGDLQMSVMKTRMQPIKKVFGRFPRLVRDLARNMKKEINLELVGE 461
Query: 484 DIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIV 543
+ ++D+ ++E L D LVHL+RNAVDHGIE PEER GKPRVG+V L A++E +H+++++
Sbjct: 462 ETDLDKNLVEALADPLVHLVRNAVDHGIESPEEREAAGKPRVGQVVLSAEQEGDHILLMI 521
Query: 544 RDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGM 603
DDG+G+D E ++ KA+E+GL+ + A L+D E NLIF PGFST +++DVSGRGVGM
Sbjct: 522 TDDGKGMDAEVLRNKAVEKGLLERDAADRLTDLECYNLIFAPGFSTKTEISDVSGRGVGM 581
Query: 604 DVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETI 663
DVVK + +NG+++V ++ G G+ ++K+P+++AI+ L++ + + +A P+ N+ E
Sbjct: 582 DVVKTKISQLNGTVNVFSQKGSGSKIVIKVPLTLAIMPTLMVMLGSQAFAFPLVNVNEIF 641
Query: 664 EVDPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTPQVERFP--AIIVDHGAQKVAIGV 721
+D S + G+ V+++R + +P+ L E+ +I+ G Q++ V
Sbjct: 642 HLDLSRTNVVDGQEVVIVRDKALPLFYLKRWLVPSAAHEEQGEGHVVILSVGTQRIGFVV 701
Query: 722 DELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
D+L+ + ++VIK LGK L G AGATI GDG + LI+D+ +L
Sbjct: 702 DQLVGQEEVVIKPLGKMLQGTPGMAGATITGDGRIALILDVPSML 746
>gb|AAG19393.1| (AE005033) chemotaxis protein; CheA [Halobacterium sp. NRC-1]
Length = 668
Score = 328 bits (833), Expect = 1e-88
Identities = 234/773 (30%), Positives = 386/773 (49%), Gaps = 119/773 (15%)
Query: 7 MSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAATM 66
M YL+ F+ + + + SL+NA+L LE S+ E +++IFR
Sbjct: 1 MDDYLEAFVREGEEHVTSLNNALLELE-------SDPGNEEAMDEIFR------------ 41
Query: 67 GFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDIDVS 126
TAH ++ F A+ E ++ V D LD + +G+++V+
Sbjct: 42 -------TAHTLKGNFGAMG---FEDASDLAHAVEDLLDEMR-----------QGNLEVT 80
Query: 127 DLFRRADEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPEKVEEGVEGKVYHIKVYFQKDAP 186
R D +G G E +E++A + V+ V G +
Sbjct: 81 S--DRMDRIFEGIDGIEAC------LDEIQATGD-----VDRDVTGTI------------ 115
Query: 187 LKGVRAFLILSDLEERGEVIWTNPGRDVIESGNLDKDVIEFKVSSDLPKEELEKVITRHP 246
+ VRA L D + G T+ G +G+ D D TR
Sbjct: 116 -ESVRAVLDEVD-GDGGSGTTTSSGDAGSPAGDGDVDA------------------TRVV 155
Query: 247 EVEKVEIIEEGEEEKGPEGEEKEYLIRVYFSPDAPLKGPRSYLILQDLESIGDIVQTNPN 306
+ + ++ E+ Y I + D+ +KG +L++ D++ P+
Sbjct: 156 DADTIDA-----------AEDPVYHIHIDMG-DSQMKGVDGMFVLEEATEAFDLLGAEPS 203
Query: 307 RGDIENGNLLEGKFFEVVLRTKEDKSKIVQLIKKHPDVENFVVTEA-------------E 353
I +G +G FE+V+ T D+ + + P + + VT E
Sbjct: 204 PDAINDGEYGDG--FELVVATPSDE--VSDTVAAFPKLSDATVTAVGDDEHAPDADSGTE 259
Query: 354 AEEKQEKKEEKAEEKKPQPPKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVITK 413
A+ + + A I+ +I + ++DV LD+L LV +LV T+
Sbjct: 260 ADASADDDADDAGTTADSGSSSGGSSAIDNTDTEIQSV-RVDVDQLDELHGLVEQLVTTR 318
Query: 414 GRLEQIGERLGDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMG 473
+L + G DRE+ + L L ++ + LQD +M+MRL P+ ++ KFPR+VRDLAR+
Sbjct: 319 IKLRR-GMEESDREVLDELDELDKITSSLQDTVMDMRLVPMKKIVGKFPRLVRDLAREQD 377
Query: 474 KEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAK 533
K+++FV+EG D+E+DRTIL ++ D L+HLLRNAVDHGIE P R GK R G + L A+
Sbjct: 378 KDIDFVVEGDDVELDRTILTEISDPLMHLLRNAVDHGIEKPAVREDNGKDREGTITLSAE 437
Query: 534 REKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKV 593
R+++HV+I VRDDG GID + +++KAIE+G+ T EE + D++ +L+F PGFST ++V
Sbjct: 438 RDRDHVLIQVRDDGAGIDHDTMREKAIEKGVKTREEVQDMPDDDVEDLVFHPGFSTNDEV 497
Query: 594 TDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYA 653
TDVSGRGVGMDVV++ V ++GS+SV + G+GTTF + LP+++AI++ L + E Y
Sbjct: 498 TDVSGRGVGMDVVRDTVTRLDGSVSVDSTPGEGTTFTMTLPVTVAIVKVLFVESGGEEYG 557
Query: 654 IPINNILETIEVDPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTPQVERFPAII-VDH 712
IPI + E + +K++ G+ VI + P+V L + +P ++ +
Sbjct: 558 IPIKTVDEISRM--KSVKSVDGEEVITYDETVYPLVRLGDALNVPDETRNGDGMLVRIRD 615
Query: 713 GAQKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGL 765
++VA+ D++ + ++V+K LS + G +GA +LG+G VV I+D+ L
Sbjct: 616 SERQVAVHCDDVRGQEEVVVKPFEGILSGIPGLSGAAVLGEGDVVTILDVATL 668
>gb|AAC08064.1| (AF031898) CheA [Pseudomonas putida]
Length = 747
Score = 328 bits (833), Expect = 1e-88
Identities = 158/405 (39%), Positives = 261/405 (64%), Gaps = 3/405 (0%)
Query: 365 AEEKKPQPPKQPKKPVIETPRV-KISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGERL 423
A KP P + P E V + +++D LD++MN+VGELV+ + RL ++G
Sbjct: 335 AAASKPAPAPRAPAPAAEKHAVSEAETTVRVDTARLDEIMNMVGELVLVRNRLVRLGLNS 394
Query: 424 GDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGA 483
GD + +A+S L + +LQ +M+ R+ PI +VF +FPR+VRDLAR++ KE+ + G
Sbjct: 395 GDEAMSKAVSNLDVVTADLQTAVMKTRMQPIKKVFGRFPRLVRDLARQLKKEINLELVGE 454
Query: 484 DIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIV 543
+ ++D+ ++E L D LVHL+RNAVDHG+E P+ER GK R GRV L A++E +H+++ +
Sbjct: 455 ETDLDKNLVEALADPLVHLVRNAVDHGVEMPDEREASGKARTGRVVLSAEQEGDHILLSI 514
Query: 544 RDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGM 603
DDG+G+DP ++ KA+E+GL+ + A LS+ + NLIF PGFST +++DVSGRGVGM
Sbjct: 515 SDDGKGMDPNILRAKAVEKGLMDKDAADRLSESDCYNLIFAPGFSTKTEISDVSGRGVGM 574
Query: 604 DVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETI 663
DVVK + +NGSI++ + G+G+ ++K+P+++AI+ L++ + ++ +A P+ N+ E
Sbjct: 575 DVVKTKISQLNGSINIYSAKGQGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIF 634
Query: 664 EVDPSILKTIGGKPVIVLRGEIIPVVMLHE--LFGLPTPQVERFPAIIVDHGAQKVAIGV 721
+D S + G+ V+++R + +P+ L + G + +I+ G Q++ V
Sbjct: 635 HLDLSRTNVVDGQEVVIVRDKALPLFYLKRWLVQGQVHEEQHEGHVVILSVGTQRIGFVV 694
Query: 722 DELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
D+L+ + ++VIK LGK L G +GATI GDG + LI+D+ +L
Sbjct: 695 DQLVGQEEVVIKPLGKMLQGTPGMSGATITGDGRIALILDVPSML 739
>sp|Q52880|CHEA_RHIME CHEMOTAXIS PROTEIN CHEA >gi|2120798|pir||S61834 cheA protein -
Rhizobium meliloti >gi|534837|gb|AAA86674.1| (U13166)
CheA [Sinorhizobium meliloti]
Length = 758
Score = 324 bits (822), Expect = 2e-87
Identities = 228/793 (28%), Positives = 381/793 (47%), Gaps = 86/793 (10%)
Query: 6 DMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAAT 65
DM++ + F + +++ L + +L L + E +N +FR H++KG A
Sbjct: 2 DMNEIKEIFFQECEEQLAELESGLLKLN-------DGDRDPETVNAVFRAVHSIKGGAGA 54
Query: 66 MGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDIDV 125
G L AH E D +R++++E +V+ ++L D + + N + G +
Sbjct: 55 FGLDDLVSFAHVFETTLDCVRSNRLEPNQDVLKVMLRSADVLADLTNAARDGGGVDEARS 114
Query: 126 SDLFRRADEFLQGGKGAEKKPEEEKPKEEVEAKEEEKPEKVEEG---------------- 169
L + + G + E PK P EEG
Sbjct: 115 RQLIKELEALANGE--LPQAAAESAPKTTPAGVAPAAPVVNEEGFQPVAFSFDDFETGDE 172
Query: 170 --VEGKVYHIKVYFQKDAPLKGVRAFLILSDLEERGEV-----IWTNPGRDVIESGNLDK 222
+E Y I + + KG A L+L DL GE+ + T P D + N ++
Sbjct: 173 PTIEPSTYEIVFKPKSELYAKGNDATLLLRDLSRLGEMSIHCDMDTLPPLDRM---NPEE 229
Query: 223 DVIEFKVSSDLPK-EELEKVITRHPEVE-KVEIIEEGEEEKGPEGEEKEYLIRVYFSPDA 280
+K+S K EE + + E + ++++ G G G +++ P
Sbjct: 230 AYFSWKISLKTDKGEEAIRSVFEFAEWDCELDVALAG----GTVGMDEDL-------PMQ 278
Query: 281 PLKGPRSYLILQDLESIGDIVQTNPNRGDIENGNLLEGKFFEVVLRTKEDKSKIVQLIKK 340
P+ P IL+D + G + EG + + S ++Q+ +
Sbjct: 279 PV--PFDLSILED--------EAQAPAGKEDRAAASEGDPRNAAVAAAQTASNVLQMAQS 328
Query: 341 HPDVENFVVTEAEAEEKQEKKEEKAEEKKPQPPKQPKKPVIETPRVKISRIIKIDVGHLD 400
E + + A + Q P I ++D+ +D
Sbjct: 329 --------TARVSPENARNSQSASAAQAAAQQAASAATPTI-----------RVDLDRVD 369
Query: 401 KLMNLVGELVITKGRLEQI---GERLGDRELFEALSTLSRLLTELQDEIMEMRLTPIAEV 457
+L+NLVGELVI + L Q + G + L L +L E+QD +M +R P+ V
Sbjct: 370 RLINLVGELVINQAMLSQSVIENDTNGTSSINMGLEELQQLTREIQDSVMAIRAQPVKPV 429
Query: 458 FNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEER 517
F + R+VR++A GK V + EG + EVD+T+++KL + L H++RNAVDHG+E PE+R
Sbjct: 430 FQRMSRIVREIADMTGKSVRLITEGENTEVDKTVIDKLAEPLTHMIRNAVDHGLETPEKR 489
Query: 518 VKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEE 577
V GK G V L AK +VI + DDG GI+ EKV++KAI+ LI + A+LSDEE
Sbjct: 490 VAAGKNPEGTVRLTAKHRSGRIVIELADDGAGINREKVRQKAIDNDLIAAD--ANLSDEE 547
Query: 578 AINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISM 637
NLIF GFSTA+K++D+SGRGVGMDVVK ++++ G I++ ++ G+G+ F + LP+++
Sbjct: 548 VDNLIFHAGFSTADKISDISGRGVGMDVVKRSIQALGGRINISSKPGQGSIFTMSLPLTL 607
Query: 638 AIIQALLIRVMDETYAIPINNILETIEVDPSILKTIG-GKPVIVLRGEIIPVVMLHELF- 695
A++ +++ V ++T +P+ I+ET++ + S + + G + +I +R P+V + +
Sbjct: 608 AVLDGMVVTVANQTLVVPLTAIVETLQPEASAIHSFGSSQRLISIRDSFCPLVDVGRILN 667
Query: 696 --GLPTPQVERFPAIIVDHGAQKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGD 753
G VE ++ G + A+ VD + +R +VIKSL ++V G A ATILGD
Sbjct: 668 FRGAQANPVEGVALLVESEGGGQRALMVDAIQGQRQVVIKSLEANYTHVPGIAAATILGD 727
Query: 754 GSVVLIIDIGGLL 766
G V LI+D+ ++
Sbjct: 728 GRVALILDVDAIV 740
>gb|AAC25077.1| (AF044495) CheA homolog [Agrobacterium tumefaciens]
Length = 757
Score = 323 bits (819), Expect = 5e-87
Identities = 236/792 (29%), Positives = 386/792 (47%), Gaps = 85/792 (10%)
Query: 6 DMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAAT 65
DM++ + F + +++ L + +L L + E ++ +FR H++KG A
Sbjct: 2 DMNEIKEIFFQECEEQLAELESGLLKLN-------DGDRDPETVDAVFRAVHSIKGGAGA 54
Query: 66 MGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDIDV 125
G L AH E D +R++++E T +V+ ++L D + + N + GS +
Sbjct: 55 FGLDDLVAFAHVFETTLDCVRSNKLEPTQDVLKVMLRSADVLADLTNAARDGGSVDESRT 114
Query: 126 SDLFRRADEFLQGGK--GAEKKPEEEKPKEEVEAKEEEKPEKVEEGVEGKVYHIKVYFQK 183
L + + G + P K E V+A KP E G E + + +
Sbjct: 115 RGLVKELEALANGEAVPASAPAPVAVKAPEPVKAPAAPKPTD-ESGFEPIPFSFSDFADE 173
Query: 184 DAPL------------------KGVRAFLILSDLEERGEVIWTNPGRDVIESGNLDKDVI 225
PL KG A L+L DL G++ S N D
Sbjct: 174 TTPLMEVPTFQITFKPHASLYSKGNEAALLLRDLSRIGDM-----------SVNCDM--- 219
Query: 226 EFKVSSDLPKEELEKVITRHPEVEKVEIIEEGEEEKGPEGEEKEYLIRVYFSPDAPLKGP 285
SDLP L+K+ PE + EKG EG + + D L+
Sbjct: 220 -----SDLPA--LDKL---DPEASYLSWTVSIATEKGEEGIRSVFEFAEW---DCDLE-- 264
Query: 286 RSYLILQDLESIGDIVQTNPNRGDIENGNLLEGKFF-EVVLRTKEDKSKIVQLIKKHPDV 344
++ D + + + P D+ + L+G E + T + V V
Sbjct: 265 -ITAVVSDASADEEELPMIPVPFDL---SALDGDAQDEPAVATPAMEDAYVAAT-----V 315
Query: 345 ENFVVTEAEAEEKQ---EKKEEKAEEKKPQPPKQPKKPVIETPRVKISRIIKIDVGHLDK 401
E V T A+ EK+E A P + + I++D+ +D+
Sbjct: 316 EAAVATTQIAQSVNAAIEKREAAAA------PAAAQANANAAANASAGQTIRVDLDRVDR 369
Query: 402 LMNLVGELVITKGRLEQI---GERLGDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVF 458
L+NLVGELVI + L Q + G + L L +L E+QD +M +R P+ VF
Sbjct: 370 LINLVGELVINQAMLSQSVIENDASGTSAVNMGLDELQQLTREIQDSVMAIRAQPVKPVF 429
Query: 459 NKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERV 518
+ R+VR++A +GK++ V EG + EVD+T+++KL + L H++RNAVDHGIE PE+R
Sbjct: 430 QRMSRIVREVADMIGKQIRLVTEGENTEVDKTVIDKLAEPLTHMIRNAVDHGIETPEKRE 489
Query: 519 KLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEA 578
GK G ++L AK ++I ++DDG GI+ E+V++KAI+ LI + A+L+DEE
Sbjct: 490 AAGKNPEGTIKLSAKHRSGRILIELQDDGAGINRERVRQKAIDNDLIAAD--ANLTDEEI 547
Query: 579 INLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMA 638
NLIF PGFSTA+K++D+SGRGVGMDVVK ++++ G IS+ + G G+TF + LP+++A
Sbjct: 548 DNLIFAPGFSTADKISDISGRGVGMDVVKRSIQALGGRISISSRPGLGSTFTMSLPLTLA 607
Query: 639 IIQALLIRVMDETYAIPINNILETIEVDPSILKTIG-GKPVIVLRGEIIPVVMLHELFGL 697
++ +++ V +T +P+ I+ET++ + + + G + +I +R P+V + +
Sbjct: 608 VLDGMVVTVAGQTLVVPLTAIVETLQPEAKNIHSFGSNQRLISIRNSFCPLVDVGRVLNF 667
Query: 698 PTPQ---VERFPAIIVDHGAQKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDG 754
Q VE ++ G + A+ VD + +R +VIKSL ++V G A ATILGDG
Sbjct: 668 RPTQADPVEGVALLVESEGGGQRALMVDAIQGQRQVVIKSLEANYTHVPGIAAATILGDG 727
Query: 755 SVVLIIDIGGLL 766
V LI+D+ ++
Sbjct: 728 RVALILDVDAIV 739
>gb|AAF67047.1|AF183382_7 (AF183382) sensor histidine kinase CheA [Pseudomonas putida]
Length = 746
Score = 318 bits (807), Expect = 1e-85
Identities = 155/405 (38%), Positives = 257/405 (63%), Gaps = 3/405 (0%)
Query: 365 AEEKKPQPPKQPKKPVIETPRV-KISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGERL 423
A KP P + P E V + +++D LD++MN+VGELV+ + RL ++G
Sbjct: 334 AAASKPAPAPRAPAPAAEKHAVSEAETTVRVDTARLDEIMNMVGELVLVRNRLVRLGLNS 393
Query: 424 GDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGA 483
GD + +A+S L + +LQ +M+ R+ PI +VF +FPR+VRDLAR++ KE+ + G
Sbjct: 394 GDEAMSKAVSNLDVVTADLQTAVMKTRMQPIKKVFGRFPRLVRDLARQLKKEINLELVGE 453
Query: 484 DIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIV 543
+ ++D+ ++E L D LVHL+RNAVDHG+E GK R GRV L A++E +H+++ +
Sbjct: 454 ETDLDKNLVEALADPLVHLVRNAVDHGVEYGLHAEASGKARTGRVVLSAEQEGDHILLSI 513
Query: 544 RDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGM 603
DDG+G+DP ++ KA+E+GL+ + A LS+ + NLIF PGFST +++DVSGRGVGM
Sbjct: 514 SDDGKGMDPNILRAKAVEKGLMDKDAADRLSESDCYNLIFAPGFSTKTEISDVSGRGVGM 573
Query: 604 DVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETI 663
DVVK + +NGSI++ + G+G+ ++K+P+++AI+ L++ + ++ +A P+ N+ E
Sbjct: 574 DVVKTKISQLNGSINIYSAKGQGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIF 633
Query: 664 EVDPSILKTIGGKPVIVLRGEIIPVVMLHE--LFGLPTPQVERFPAIIVDHGAQKVAIGV 721
+D S + G+ V+++R + +P+ L + G + +I+ G Q++ V
Sbjct: 634 HLDLSRTNVVDGQEVVIVRDKALPLFYLKRWLVQGQVHEEQHEGHVVILSVGTQRIGFVV 693
Query: 722 DELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
D+L+ + ++VIK LGK L G +GATI GDG + LI+D+ +L
Sbjct: 694 DQLVGQEEVVIKPLGKMLQGTPGMSGATITGDGRIALILDVPSML 738
>pir||C82380 chemotaxis protein CheA VCA1095 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9658541|gb|AAF96987.1| (AE004434)
chemotaxis protein CheA [Vibrio cholerae]
Length = 720
Score = 315 bits (799), Expect = 1e-84
Identities = 162/412 (39%), Positives = 270/412 (65%), Gaps = 16/412 (3%)
Query: 371 QPPKQPKKPVIETPRVKISR----------IIKIDVGHLDKLMNLVGELVITKGRLEQIG 420
+PP PVI P+ + I++D+ +D L+NLVGELVIT+ L ++G
Sbjct: 292 EPPVATVAPVIANPKESATNKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQSMLTELG 351
Query: 421 ERLGDRELFEALSTLSRLLT---ELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVE 477
+L + + L++LL +LQ+ ++ +R+ P++ F++FPR+VRDL ++GK+V+
Sbjct: 352 NDFSMDKLDKLKAGLAQLLQNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVD 411
Query: 478 FVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKN 537
++G E+D+T+LE++ D LVHL+RN +DHG+E P+ R+ GKP G + L A +
Sbjct: 412 LQIQGEQTELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGG 471
Query: 538 HVVIIVRDDGRGIDPEKVKKKAIERGLITPE-EAASLSDEEAINLIFLPGFSTAEKVTDV 596
+++ + DDG GID +K+ +KA+E+G++ P+ + + L+D++ INLIF PGFSTAE+V+D+
Sbjct: 472 SIIVEISDDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDI 531
Query: 597 SGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPI 656
SGRGVGMDVV+ ++ + G I V +E+G+G+ F + LP+++AI+ L++V D+ Y IP+
Sbjct: 532 SGRGVGMDVVRRNIEELGGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPL 591
Query: 657 NNILETIEVDPSILK-TIGGKPVIVLRGEIIPVVMLHELFGL-PTPQVERFPAIIVDHGA 714
I+E+I+++ + +K GG + LR E IP++ L + + + +E+ V+
Sbjct: 592 LTIVESIQINTASVKHAAGGIELYRLREENIPILRLQDELAMGRSGSLEKRLICFVESAG 651
Query: 715 QKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
+V + VD+LL ++ +VIKSL + V G +GATILGDGSV LI+DI GL+
Sbjct: 652 HRVGLLVDDLLDQQQVVIKSLESNYAKVAGISGATILGDGSVSLILDIPGLI 703
>gb|AAA23573.1| (M34669) CheA protein (alt.) [Escherichia coli]
Length = 654
Score = 312 bits (791), Expect = 9e-84
Identities = 188/540 (34%), Positives = 306/540 (55%), Gaps = 39/540 (7%)
Query: 235 KEELEKVITRHPEVEKVEIIEEGEEEKGPEGEEKEYLIRVYFSPDAPLKGPRSYLILQDL 294
K E +TR V K E +E + P R+ SP LK L+ ++L
Sbjct: 131 KGETPSAVTRLSVVAKSEPQDEQSRSQSPR--------RIILSP---LKAGEVDLLEEEL 179
Query: 295 ---ESIGDIVQTNPNRGDIENGNLLEGKFFEVVLRTKEDKSKIVQLIKKHPDVENFVVTE 351
++ D+V+ + I G++ E V+ E + ++ P + V +
Sbjct: 180 GHLTTLTDVVKGADSLSAILPGDIAEDDITAVLCFVIEADQITFETVEVSPKISTPPVLK 239
Query: 352 AEAEEKQEKKEEKAEEKKPQPPKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVI 411
AE+ + E+ + T R S I++ V +D+L+NLVGELVI
Sbjct: 240 LAAEQAPTGRVEREK----------------TTRSNESTSIRVAVEKVDQLINLVGELVI 283
Query: 412 TKGRLEQIGERL---GDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDL 468
T+ L Q L +L ++ L R +LQ+ +M +R+ P+ VF+++PR+VRDL
Sbjct: 284 TQSMLAQRSSELDPVNHGDLITSMGQLQRNARDLQESVMSIRMMPMEYVFSRYPRLVRDL 343
Query: 469 ARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRV 528
A K+GK+VE + G+ E+D++++E++ D L HL+RN++DHGIE PE+R+ GK VG +
Sbjct: 344 AGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 403
Query: 529 ELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFS 588
L A+ + ++ I V DDG G++ E++ KA +GL E ++SD+E LIF PGFS
Sbjct: 404 ILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLTVSE---NMSDDEVAMLIFAPGFS 460
Query: 589 TAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVM 648
TAE+VTDVSGRGVGMDVVK ++ M G + +Q++ G GTT + LP+++AI+ + +RV
Sbjct: 461 TAEQVTDVSGRGVGMDVVKRNIQKMGGHVEIQSKQGTGTTIRILLPLTLAILDGMSVRVA 520
Query: 649 DETYAIPINNILETIEVDPSILKTI-GGKPVIVLRGEIIPVVMLHELFGLPTPQVERFPA 707
DE + +P+N ++E+++ + L + GG+ V+ +RGE +P+V L ++F + + E
Sbjct: 521 DEVFILPLNAVMESLQPREADLHPLAGGERVLEVRGEYLPIVELWKVFNVAGAKTEATQG 580
Query: 708 IIV--DHGAQKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGL 765
I+V G ++ A+ VD+L+ + +V+K+L V G + ATILGDGSV LI+D+ L
Sbjct: 581 IVVILQSGGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAATILGDGSVALIVDVSAL 640
>gb|AAA23574.1| (M34669) CheA protein (alt.) [Escherichia coli]
Length = 557
Score = 312 bits (791), Expect = 9e-84
Identities = 188/540 (34%), Positives = 306/540 (55%), Gaps = 39/540 (7%)
Query: 235 KEELEKVITRHPEVEKVEIIEEGEEEKGPEGEEKEYLIRVYFSPDAPLKGPRSYLILQDL 294
K E +TR V K E +E + P R+ SP LK L+ ++L
Sbjct: 34 KGETPSAVTRLSVVAKSEPQDEQSRSQSPR--------RIILSP---LKAGEVDLLEEEL 82
Query: 295 ---ESIGDIVQTNPNRGDIENGNLLEGKFFEVVLRTKEDKSKIVQLIKKHPDVENFVVTE 351
++ D+V+ + I G++ E V+ E + ++ P + V +
Sbjct: 83 GHLTTLTDVVKGADSLSAILPGDIAEDDITAVLCFVIEADQITFETVEVSPKISTPPVLK 142
Query: 352 AEAEEKQEKKEEKAEEKKPQPPKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVI 411
AE+ + E+ + T R S I++ V +D+L+NLVGELVI
Sbjct: 143 LAAEQAPTGRVEREK----------------TTRSNESTSIRVAVEKVDQLINLVGELVI 186
Query: 412 TKGRLEQIGERL---GDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDL 468
T+ L Q L +L ++ L R +LQ+ +M +R+ P+ VF+++PR+VRDL
Sbjct: 187 TQSMLAQRSSELDPVNHGDLITSMGQLQRNARDLQESVMSIRMMPMEYVFSRYPRLVRDL 246
Query: 469 ARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRV 528
A K+GK+VE + G+ E+D++++E++ D L HL+RN++DHGIE PE+R+ GK VG +
Sbjct: 247 AGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 306
Query: 529 ELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFS 588
L A+ + ++ I V DDG G++ E++ KA +GL E ++SD+E LIF PGFS
Sbjct: 307 ILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLTVSE---NMSDDEVAMLIFAPGFS 363
Query: 589 TAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVM 648
TAE+VTDVSGRGVGMDVVK ++ M G + +Q++ G GTT + LP+++AI+ + +RV
Sbjct: 364 TAEQVTDVSGRGVGMDVVKRNIQKMGGHVEIQSKQGTGTTIRILLPLTLAILDGMSVRVA 423
Query: 649 DETYAIPINNILETIEVDPSILKTI-GGKPVIVLRGEIIPVVMLHELFGLPTPQVERFPA 707
DE + +P+N ++E+++ + L + GG+ V+ +RGE +P+V L ++F + + E
Sbjct: 424 DEVFILPLNAVMESLQPREADLHPLAGGERVLEVRGEYLPIVELWKVFNVAGAKTEATQG 483
Query: 708 IIV--DHGAQKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGL 765
I+V G ++ A+ VD+L+ + +V+K+L V G + ATILGDGSV LI+D+ L
Sbjct: 484 IVVILQSGGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAATILGDGSVALIVDVSAL 543
>pir||T45017 chemotaxis histidine protein kinase cheAII [validated] -
Rhodobacter sphaeroides >gi|2293000|emb|CAA04429.1|
(AJ000977) chemotaxis histidine protein kinase
[Rhodobacter sphaeroides]
Length = 654
Score = 309 bits (783), Expect = 8e-83
Identities = 161/402 (40%), Positives = 247/402 (61%), Gaps = 5/402 (1%)
Query: 370 PQPPKQPKKPVIE-TPRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGERLGDREL 428
P PP P+K E T K +++ LD LM+ VGELVI RL Q+ ++ D L
Sbjct: 245 PPPPAAPRKAADEATGADKAGATMRVAAERLDHLMDRVGELVIADARLLQLAQQSRDPAL 304
Query: 429 FEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVD 488
A +SRL L+D M +R+ P+ + +F R++ L+ + K V FV+ G + E+D
Sbjct: 305 MAAAEEISRLAAGLRDTTMRIRMVPVRSMVGRFRRLIHGLSEMVSKPVSFVVLGEETELD 364
Query: 489 RTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGR 548
+T++E+L D +VH+LRN+VDHG+E P +R GKP GR+ L A++ VVI + DDGR
Sbjct: 365 KTVIEQLADPIVHMLRNSVDHGLEAPADRAAAGKPAEGRITLEAEQSGAEVVIRISDDGR 424
Query: 549 GIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFL-PGFSTAEKVTDVSGRGVGMDVVK 607
G++ ++++ KAI G+I P+ ++ E A+N + L PG STAE +T++SGRGVGMDVVK
Sbjct: 425 GLNRDRIRAKAIANGIIGPD---AILTESAMNALILEPGISTAEAITEISGRGVGMDVVK 481
Query: 608 EVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDP 667
+ ++ + GSI VQ+ G+GTTF L+LP+++AII+ LL+ V E ++IP+ + E +E+ P
Sbjct: 482 KTIEGLRGSIEVQSVEGRGTTFTLRLPLTLAIIEGLLVEVAGERFSIPLAAVQEIVELPP 541
Query: 668 SILKTIGGKPVIVLRGEIIPVVMLHELFGLPTPQVERFPAIIVDHGAQKVAIGVDELLHK 727
+ G + +R ++P+V L +F P E +IV G + VD ++
Sbjct: 542 DRREEDGSADFLDVRDRLVPLVRLRRIFSSPGTPDEFQTVVIVRAGETRAGAVVDRIIGT 601
Query: 728 RDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLLGGG 769
IVIK + + S +R F+GATILGDG+V LI+D+ L G G
Sbjct: 602 NQIVIKQMSRLHSGIRAFSGATILGDGTVALILDVPHLAGVG 643
>sp|P07363|CHEA_ECOLI CHEMOTAXIS PROTEIN CHEA >gi|7428895|pir||QRECCS chemotaxis protein
cheA [validated] - Escherichia coli
>gi|1736547|dbj|BAA15709.1| (D90831) Chemotaxis protein
CheA (EC 2.7.3.-). [Escherichia coli]
>gi|1788197|gb|AAC74958.1| (AE000282) sensory transducer
kinase between chemo- signal receptors and CheB and CheY
[Escherichia coli K12]
Length = 654
Score = 309 bits (782), Expect = 1e-82
Identities = 187/540 (34%), Positives = 305/540 (55%), Gaps = 39/540 (7%)
Query: 235 KEELEKVITRHPEVEKVEIIEEGEEEKGPEGEEKEYLIRVYFSPDAPLKGPRSYLILQDL 294
K E +TR V K E +E + P R+ S LK L+ ++L
Sbjct: 131 KGETPSAVTRLSVVAKSEPQDEQSRSQSPR--------RIILSR---LKAGEVDLLEEEL 179
Query: 295 ---ESIGDIVQTNPNRGDIENGNLLEGKFFEVVLRTKEDKSKIVQLIKKHPDVENFVVTE 351
++ D+V+ + I G++ E V+ E + ++ P + V +
Sbjct: 180 GHLTTLTDVVKGADSLSAILPGDIAEDDITAVLCFVIEADQITFETVEVSPKISTPPVLK 239
Query: 352 AEAEEKQEKKEEKAEEKKPQPPKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVI 411
AE+ + E+ + T R S I++ V +D+L+NLVGELVI
Sbjct: 240 LAAEQAPTGRVEREK----------------TTRSNESTSIRVAVEKVDQLINLVGELVI 283
Query: 412 TKGRLEQIGERL---GDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDL 468
T+ L Q L +L ++ L R +LQ+ +M +R+ P+ VF+++PR+VRDL
Sbjct: 284 TQSMLAQRSSELDPVNHGDLITSMGQLQRNARDLQESVMSIRMMPMEYVFSRYPRLVRDL 343
Query: 469 ARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRV 528
A K+GK+VE + G+ E+D++++E++ D L HL+RN++DHGIE PE+R+ GK VG +
Sbjct: 344 AGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 403
Query: 529 ELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFS 588
L A+ + ++ I V DDG G++ E++ KA +GL E ++SD+E LIF PGFS
Sbjct: 404 ILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLTVSE---NMSDDEVAMLIFAPGFS 460
Query: 589 TAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVM 648
TAE+VTDVSGRGVGMDVVK ++ M G + +Q++ G GTT + LP+++AI+ + +RV
Sbjct: 461 TAEQVTDVSGRGVGMDVVKRNIQKMGGHVEIQSKQGTGTTIRILLPLTLAILDGMSVRVA 520
Query: 649 DETYAIPINNILETIEVDPSILKTI-GGKPVIVLRGEIIPVVMLHELFGLPTPQVERFPA 707
DE + +P+N ++E+++ + L + GG+ V+ +RGE +P+V L ++F + + E
Sbjct: 521 DEVFILPLNAVMESLQPREADLHPLAGGERVLEVRGEYLPIVELWKVFNVAGAKTEATQG 580
Query: 708 IIV--DHGAQKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGL 765
I+V G ++ A+ VD+L+ + +V+K+L V G + ATILGDGSV LI+D+ L
Sbjct: 581 IVVILQSGGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAATILGDGSVALIVDVSAL 640
>pir||C83624 probable two-component sensor PA0178 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946011|gb|AAG03568.1|AE004455_9 (AE004455) probable
two-component sensor [Pseudomonas aeruginosa]
Length = 639
Score = 307 bits (777), Expect = 4e-82
Identities = 167/411 (40%), Positives = 253/411 (60%), Gaps = 18/411 (4%)
Query: 370 PQPPKQPKKPVIETPRVKISRI--------IKIDVGHLDKLMNLVGELVITKGRLEQIGE 421
P P P + V R ++ + I++ V +D L+NLVGELVIT+ L Q+GE
Sbjct: 218 PAAPSAPAQAVAAPARGAVAPVRGDGESGSIRVSVEKIDSLINLVGELVITQAMLGQLGE 277
Query: 422 RLGD---RELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEF 478
+L L AL+ L +LQ+ +M +R+ PI +F++FPR+VRD A ++GK+VE
Sbjct: 278 QLDPSRHERLQHALAQLEHNTRDLQESVMSIRMLPINFIFSRFPRLVRDTATRLGKQVEL 337
Query: 479 VMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNH 538
+ G E+D++++EKL D L H++RN++DHGIE P ER+ GKP G V+L A +
Sbjct: 338 HLHGEHTELDKSVIEKLSDPLTHIVRNSIDHGIETPAERLAAGKPASGTVKLAASHQGGS 397
Query: 539 VVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSG 598
VV+ V DDGRG+ ++ KA ER L + +SD E L+F+PGFSTAE VT++SG
Sbjct: 398 VVVEVSDDGRGLSRPRILAKARERNLPVHD---GMSDAEVWQLVFMPGFSTAETVTELSG 454
Query: 599 RGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINN 658
RGVGMDVVK + +M G I + + G GT ++LP+++AI+ L++ V Y IP+
Sbjct: 455 RGVGMDVVKRNIGAMGGRIDIDSAPGMGTRIGIRLPLTLAILDGLIVAVEAVNYVIPLTY 514
Query: 659 ILETIEVDPSILKTIGGK--PVIVLRGEIIPVVMLHEL--FGLPTPQVERFPAIIVDHGA 714
I+E+++ ++ +GG+ +I +RGE +P+ LHEL G P E+ +I++
Sbjct: 515 IVESLQARSDDVRGLGGEDNAMIRVRGEYLPLFSLHELLRIGGEAPAPEQGIVVILESEG 574
Query: 715 QKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGL 765
+ A+ VDEL+ ++ +VIKSL + V G AGATI+GDGSV LI+D+ L
Sbjct: 575 RSFALQVDELVGQQQVVIKSLEQNFRRVEGIAGATIMGDGSVALILDVDAL 625
>sp|P09384|CHEA_SALTY CHEMOTAXIS PROTEIN CHEA >gi|79055|pir||A28959 chemotaxis protein
cheA - Salmonella typhimurium >gi|153900|gb|AAA27034.1|
(J03611) sensory protein (cheA; gtg start codon)
[Salmonella typhimurium]
Length = 671
Score = 302 bits (764), Expect = 1e-80
Identities = 166/428 (38%), Positives = 264/428 (60%), Gaps = 28/428 (6%)
Query: 363 EKAEEKKPQPPKQPKKPVIETPRVKI-----------------SRIIKIDVGHLDKLMNL 405
EKA+EK P P P + P K S I++ V +D+L+NL
Sbjct: 237 EKAQEKTEVAPVAP--PAVVAPAAKSAAHEHHAGREKPARERESTSIRVAVEKVDQLINL 294
Query: 406 VGELVITKGRLEQIGERL---GDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFP 462
VGELVIT+ L Q L +L ++ L R +LQ+ +M +R+ P+ VF++FP
Sbjct: 295 VGELVITQSMLAQRSNELDPVNHGDLITSMGQLQRNARDLQESVMSIRMMPMEYVFSRFP 354
Query: 463 RMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGK 522
R+VRDLA K+GK+VE + G+ E+D++++E++ D L HL+RN++DHGIE PE+R++ GK
Sbjct: 355 RLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLDHGIEMPEKRLEAGK 414
Query: 523 PRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLI 582
VG + L A+ + ++ I V DDG G++ E++ KA+ +G+ E +++D+E LI
Sbjct: 415 NVVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAMSQGMAVNE---NMTDDEVGMLI 471
Query: 583 FLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQA 642
F PGFSTAE+VTDVSGRGVGMDVVK ++ M G + +Q++ G GTT + LP+++AI+
Sbjct: 472 FAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGSGTTIRILLPLTLAILDG 531
Query: 643 LLIRVMDETYAIPINNILETIEVDPSILKTI-GGKPVIVLRGEIIPVVMLHELFGLPTPQ 701
+ +RV E + +P+N ++E+++ L + GG+ V+ +RGE +P+V L ++F + +
Sbjct: 532 MSVRVAGEVFILPLNAVMESLQPREEDLHPLAGGERVLEVRGEYLPLVELWKVFDVDGAK 591
Query: 702 VERFPAIIV--DHGAQKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLI 759
E I+V ++ A+ VD+L+ + +V+K+L V G + ATILGDGSV LI
Sbjct: 592 TEATQGIVVILQSAGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAATILGDGSVALI 651
Query: 760 IDIGGLLG 767
+D+ L G
Sbjct: 652 VDVSALQG 659
>gb|AAC45555.1| (U61851) histidine kinase CheA [Treponema pallidum]
Length = 812
Score = 299 bits (758), Expect = 7e-80
Identities = 162/370 (43%), Positives = 240/370 (64%), Gaps = 20/370 (5%)
Query: 415 RLEQIGERLGDRELFEALST---------------LSRLLTELQDEIMEMRLTPIAEVFN 459
R E I E +G ++F + L R+ ELQ+ +M++R+ PI+++F+
Sbjct: 426 RKEMIAEAVGVFDIFSSFENGLKQSVTKFRSSAQNLGRISGELQEGVMKIRMVPISQIFS 485
Query: 460 KFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVK 519
++PR+VRDL+R + KEV V+EG + E+D++++E L D ++H +RN++DHGIE PE R +
Sbjct: 486 RYPRVVRDLSRDLRKEVRLVIEGEETELDKSVVEDLLDPIMHCVRNSLDHGIEAPEVRAR 545
Query: 520 LGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAI 579
GKP G + L A E N +VI V DDGRGID E VK KA+ERG++ P +L++ EA
Sbjct: 546 SGKPAQGTLLLRASNEGNMIVIEVADDGRGIDVEAVKTKAVERGVLHP--GKNLTEVEAF 603
Query: 580 NLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAI 639
LIF PGFST+ V++VSGRGVG+DVVK ++ +NG++SV +EV KGT F++KLP+++AI
Sbjct: 604 QLIFAPGFSTSRSVSNVSGRGVGLDVVKTHIERLNGTVSVFSEVQKGTRFVIKLPLTLAI 663
Query: 640 IQALLIRVMDETYAIPINNILETIEVDPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPT 699
IQ LLIRV E Y+IPI +++E+ + + I V +R E+I ++ L LFG+
Sbjct: 664 IQGLLIRVGQEVYSIPIASVIESHRIKSEEINRIDNYEVFNVRNEVISLLRLDRLFGISC 723
Query: 700 PQV---ERFPAIIVDHGAQKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSV 756
+ +IV +KV + VD L+ + D+VIK L ++ G AGA+ILGDGSV
Sbjct: 724 DDEVTGQYHYVVIVGAAEKKVGLMVDALIGEEDVVIKPLRDQFTSSPGIAGASILGDGSV 783
Query: 757 VLIIDIGGLL 766
LIID+G LL
Sbjct: 784 SLIIDVGQLL 793
Score = 78.8 bits (191), Expect = 2e-13
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 7 MSQYLD--------EFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHT 58
MS YLD +F ++A +++ L + IL +E+ + + +++IFR AHT
Sbjct: 3 MSDYLDAGNEELLKDFFSEAEQQVEQLESNILVIEQ-------DPTNRDAVDEIFRAAHT 55
Query: 59 LKGTAATMGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESG 118
LKG AAT+ +LS H +E+L D IR+ ++ + VVDL+L LD I+AM+ + G
Sbjct: 56 LKGGAATVEMHELSGFTHAVEDLLDGIRSEKVTVDGAVVDLLLTSLDVIKAMLESRAGGG 115
Query: 119 SEGDIDVSDLFRRADEFL 136
+ DVSDL R +L
Sbjct: 116 PYAE-DVSDLVARLRSYL 132
>pir||F70170 chemotaxis histidine kinase (cheA-1) homolog - Lyme disease
spirochete >gi|2688490|gb|AAC66935.1| (AE001158)
chemotaxis histidine kinase (cheA-1) [Borrelia
burgdorferi]
Length = 714
Score = 298 bits (756), Expect = 1e-79
Identities = 162/388 (41%), Positives = 244/388 (62%), Gaps = 4/388 (1%)
Query: 382 ETPRVKIS-RIIKIDVGHLDKLMNLVGELVITKGRLEQIGERLGDRELFEALSTLSRLLT 440
+T R K++ IK+D LD L+NLVGELV + +L + E L + S L+
Sbjct: 322 DTARSKVNIASIKVDSKKLDHLVNLVGELVTIQSKLSKEAENRNSNILNSISAEFSLLIN 381
Query: 441 ELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALV 500
EL+D +R PI +F KF R+V+DL+ +GK + + G D +D++I+EKL + LV
Sbjct: 382 ELRDYTTGLRTVPIEILFVKFQRIVKDLSTSLGKSILYHASGGDTVLDKSIIEKLNEPLV 441
Query: 501 HLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAI 560
HL+RN++DHGIE +ER LGK G ++L A + + V++I+ DDGRG+D K+ KKAI
Sbjct: 442 HLIRNSIDHGIESAQERESLGKDPKGIIKLSACQSGDSVIVIIEDDGRGLDKNKILKKAI 501
Query: 561 ERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQ 620
ER +I+ A +LS+ + NLIF PGFSTA VTD+SGRGVGMDVVK+ V+S+ G + ++
Sbjct: 502 ERNIISDSVAKTLSEIDVYNLIFEPGFSTASSVTDISGRGVGMDVVKKQVESLRGHVVLE 561
Query: 621 TEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTIG---GKP 677
+E GK T L P+++AII+ L+RV DE + +P++N+ +E + I + G
Sbjct: 562 SEFGKYTRIKLIFPLTLAIIEGWLVRVKDEHFIVPLSNVESCLESNKLISQIDGIETKSN 621
Query: 678 VIVLRGEIIPVVMLHELFGLPTPQVERFPAIIVDHGAQKVAIGVDELLHKRDIVIKSLGK 737
V+ RG +I + L E F + + + ++V+ + K+ I VDE+L + VIK+LGK
Sbjct: 622 VMNYRGSMISYIRLREFFQVSSEKSLSEQVVVVNTNSGKMGIVVDEVLGQHQTVIKALGK 681
Query: 738 FLSNVRGFAGATILGDGSVVLIIDIGGL 765
S V G +GATILGDGS+ L++DI +
Sbjct: 682 IYSRVEGVSGATILGDGSLALVVDIDAI 709
>sp|P96123|CHEA_TREPA CHEMOTAXIS PROTEIN CHEA >gi|7520968|pir||A71335 probable chemotaxis
histidine kinase (cheA) - syphilis spirochete
>gi|3322640|gb|AAC65348.1| (AE001215) chemotaxis
histidine kinase (cheA) [Treponema pallidum]
Length = 812
Score = 298 bits (756), Expect = 1e-79
Identities = 156/335 (46%), Positives = 230/335 (68%), Gaps = 5/335 (1%)
Query: 435 LSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEK 494
L R+ ELQ+ +M++R+ PI+++F+++PR+VRDL+R + KEV V+EG + E+D++++E
Sbjct: 461 LGRISGELQEGVMKIRMVPISQIFSRYPRVVRDLSRDLRKEVRLVIEGEETELDKSVVED 520
Query: 495 LGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEK 554
L D ++H +RN++DHGIE PE R + GKP G + L A E N +VI V DDGRGID E
Sbjct: 521 LLDPIMHCVRNSLDHGIEAPEVRARSGKPAQGTLLLRASNEGNMIVIEVADDGRGIDVEA 580
Query: 555 VKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMN 614
VK KA+ERG++ P +L++ EA LIF PGFST+ V++VSGRGVG+DVVK ++ +N
Sbjct: 581 VKTKAVERGVLHP--GKNLTEVEAFQLIFAPGFSTSRSVSNVSGRGVGLDVVKTHIERLN 638
Query: 615 GSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTIG 674
G++SV +EV KGT F++KLP+++AIIQ LLIRV E Y+IPI +++E+ + + I
Sbjct: 639 GTVSVFSEVQKGTRFVIKLPLTLAIIQGLLIRVGQEVYSIPIASVIESHRIKSEEINRID 698
Query: 675 GKPVIVLRGEIIPVVMLHELFGLPTPQV---ERFPAIIVDHGAQKVAIGVDELLHKRDIV 731
V +R E+I ++ L LFG+ + +IV +KV + VD L+ + D+V
Sbjct: 699 NYEVFNVRNEVISLLRLDRLFGISCDDEVTGQYHYVVIVGAAEKKVGLMVDALIGEEDVV 758
Query: 732 IKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
IK L ++ G AGA+ILGDGSV LIID+G LL
Sbjct: 759 IKPLRDQFTSSPGIAGASILGDGSVSLIIDVGQLL 793
Score = 78.8 bits (191), Expect = 2e-13
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 7 MSQYLD--------EFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHT 58
MS YLD +F ++A +++ L + IL +E+ + + +++IFR AHT
Sbjct: 3 MSDYLDAGNEELLKDFFSEAEQQVEQLESNILVIEQ-------DPTNRDAVDEIFRAAHT 55
Query: 59 LKGTAATMGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESG 118
LKG AAT+ +LS H +E+L D IR+ ++ + VVDL+L LD I+AM+ + G
Sbjct: 56 LKGGAATVEMHELSGFTHAVEDLLDGIRSEKVTVDGAVVDLLLTSLDVIKAMLESRAGGG 115
Query: 119 SEGDIDVSDLFRRADEFL 136
+ DVSDL R +L
Sbjct: 116 PYAE-DVSDLVARLRSYL 132
>gb|AAD45220.1|AF105017_1 (AF105017) histidine kinase [Treponema pallidum subsp. pertenue]
Length = 810
Score = 298 bits (756), Expect = 1e-79
Identities = 156/335 (46%), Positives = 230/335 (68%), Gaps = 5/335 (1%)
Query: 435 LSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEK 494
L R+ ELQ+ +M++R+ PI+++F+++PR+VRDL+R + KEV V+EG + E+D++++E
Sbjct: 459 LGRISGELQEGVMKIRMVPISQIFSRYPRVVRDLSRDLRKEVRLVIEGEETELDKSVVED 518
Query: 495 LGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEK 554
L D ++H +RN++DHGIE PE R + GKP G + L A E N +VI V DDGRGID E
Sbjct: 519 LLDPIMHCVRNSLDHGIEAPEVRARSGKPAQGTLLLRASNEGNMIVIEVADDGRGIDVEA 578
Query: 555 VKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMN 614
VK KA+ERG++ P +L++ EA LIF PGFST+ V++VSGRGVG+DVVK ++ +N
Sbjct: 579 VKTKAVERGVLHP--GKNLTEVEAFQLIFAPGFSTSRSVSNVSGRGVGLDVVKTHIERLN 636
Query: 615 GSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTIG 674
G++SV +EV KGT F++KLP+++AIIQ LLIRV E Y+IPI +++E+ + + I
Sbjct: 637 GTVSVFSEVQKGTRFVIKLPLTLAIIQGLLIRVGQEVYSIPIASVIESHRIKSEEINRID 696
Query: 675 GKPVIVLRGEIIPVVMLHELFGLPTPQV---ERFPAIIVDHGAQKVAIGVDELLHKRDIV 731
V +R E+I ++ L LFG+ + +IV +KV + VD L+ + D+V
Sbjct: 697 NYEVFNVRNEVISLLRLDRLFGISCDDEVTGQYHYVVIVGAAEKKVGLMVDALIGEEDVV 756
Query: 732 IKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
IK L ++ G AGA+ILGDGSV LIID+G LL
Sbjct: 757 IKPLRDQFTSSPGIAGASILGDGSVSLIIDVGQLL 791
Score = 76.9 bits (186), Expect = 8e-13
Identities = 48/138 (34%), Positives = 76/138 (54%), Gaps = 16/138 (11%)
Query: 7 MSQYLD--------EFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHT 58
MS YLD +F ++A +++ L + IL +E+ + + +++IFR AHT
Sbjct: 1 MSDYLDAGNEELLKDFFSEAEQQVEQLESNILVIEQ-------DPTNRDAVDEIFRAAHT 53
Query: 59 LKGTAATMGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESG 118
LKG AA + +LS H +E+L D IR+ ++ + VVDL+L LD I+AM+ + G
Sbjct: 54 LKGGAAAVEMHELSGFTHAVEDLLDGIRSEKVTVDGAVVDLLLTSLDVIKAMLESRAGGG 113
Query: 119 SEGDIDVSDLFRRADEFL 136
+ DVSDL R +L
Sbjct: 114 PYAE-DVSDLVARLRSYL 130
>pir||E82205 chemotaxis protein CheA VC1397 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9655892|gb|AAF94554.1| (AE004218)
chemotaxis protein CheA [Vibrio cholerae]
Length = 761
Score = 298 bits (756), Expect = 1e-79
Identities = 150/410 (36%), Positives = 260/410 (62%), Gaps = 11/410 (2%)
Query: 363 EKAEEKKPQPPKQPKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGER 422
+K E + QP ++ + K + +K+D +D LM+LVGEL++ K ++ + R
Sbjct: 343 DKCENEPAQPSAITVNEQLDKVKKKQIKTLKVDQEKVDLLMDLVGELIVAKNSMQYLAYR 402
Query: 423 ----LGDRELFEAL----STLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGK 474
G R+L + + S +SRL +LQ +M++R+ P+A VF ++PR++RD++RK+GK
Sbjct: 403 AENEFGVRKLAQDIKAEQSVISRLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGK 462
Query: 475 EVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKR 534
+V+ ++EG D E D++I+E L + LVHL+RNA+DHGIE P+ R + GK G++ L A
Sbjct: 463 QVDLIIEGEDTEADKSIVEDLSEPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAFT 522
Query: 535 EKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVT 594
+ V+I + DDG+G+D E+VK KA+ERGL+ + +S +E I+LIF PGFST E+V+
Sbjct: 523 LDDSVIIKMSDDGKGVDVERVKTKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVS 582
Query: 595 DVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAI 654
D+SGRGVGMD V+ ++ G++++ +E GKG+ + LP+SM I + ++ + +++AI
Sbjct: 583 DLSGRGVGMDAVRTAIERNGGTLTLSSEPGKGSEITMILPLSMTISRVMMFELEQQSFAI 642
Query: 655 PINNILETIEVD-PSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTPQV--ERFPAIIVD 711
PI ++++T+++ ++ + +LRGE +P++ L F + + Q+ + P ++V
Sbjct: 643 PIESVIQTLKISRHKDIRRVKNLDTFILRGETVPILYLKRAFEMNSAQIYPDIQPILVVR 702
Query: 712 HGAQKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIID 761
G + + VD L +D++IK L L+ + GA I+GDG V+L++D
Sbjct: 703 VGDDVLGLAVDRLQEGQDVIIKPLEGALATFSIYRGAAIMGDGRVLLVLD 752
>gb|AAB71329.1| (U64519) CheAY [Rhodospirillum centenum (Rhodocista centenaria)]
Length = 901
Score = 294 bits (746), Expect = 2e-78
Identities = 161/417 (38%), Positives = 246/417 (58%), Gaps = 16/417 (3%)
Query: 365 AEEKKPQPPKQPKKPVIETPRVKISR-----------IIKIDVGHLDKLMNLVGELVITK 413
A +P PP +P P V +R I++ V L+ LM +V ELV+T+
Sbjct: 187 ATAAEPPPPAEPAPPAARVEAVDDTRGEPKESAVAQQSIRVHVDLLENLMTMVSELVLTR 246
Query: 414 GRLEQIGERLGDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMG 473
+L QI + E L L+ + +ELQ+ +M+ R+ PI + K PR+VRDL+ ++
Sbjct: 247 NQLLQILRSQKESEFAAPLQRLNHVTSELQEGVMKTRMQPIGNAWAKLPRLVRDLSHELH 306
Query: 474 KEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAK 533
K++E M GA+ E+DR +LE + D L H++RN+ DHG+E P ER GK GR+ L A
Sbjct: 307 KKIELQMLGAETELDRQVLELIKDPLTHMVRNSGDHGLELPAERAAKGKSETGRITLNAF 366
Query: 534 REKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKV 593
E H++I + DDGRG+ EK+K KAI+ GL T E A++SD++ + I PGFSTA V
Sbjct: 367 HEGGHIIIEISDDGRGLAIEKIKAKAIQNGLATEAELAAMSDQQIQSFIMKPGFSTAAAV 426
Query: 594 TDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYA 653
T VSGRGVGMDVVK ++ + G+I +++ GKGTTF +K+P+++AI+ AL++ E +A
Sbjct: 427 TSVSGRGVGMDVVKTNIERIGGTIEMKSVEGKGTTFTIKIPLTLAIVSALIVECATERFA 486
Query: 654 IPINNILETIEV---DPSILKTIGGKPVIVLRGEIIPVVMLHELFGLPTPQVERFPAIIV 710
IP +++E + ++ I G PV+ LR ++P+V L L L ++ IV
Sbjct: 487 IPQISVIELVRAATDSEHKIERIHGTPVLRLRNRLLPLVSLQRLLKLGADDEDKRETFIV 546
Query: 711 --DHGAQKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGL 765
G I VD++ +IV+K + L ++ F+G TILGDGSV++I+D G+
Sbjct: 547 VTQVGNYVFGIIVDKVFDTEEIVVKPVAPILRHIELFSGNTILGDGSVIMILDPNGI 603
Score = 73.7 bits (178), Expect = 7e-12
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 7 MSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAATM 66
M L EFL + + + L ++ LE+ + G L++ IFR HT+KGT +
Sbjct: 1 MDDLLSEFLTETNENLAVLDVELVRLERNPNDPG-------LLSNIFRLVHTIKGTCGFL 53
Query: 67 GFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGDIDVS 126
G +L AH EN+ R+ ++ +TP V L+L+ LD I+ +++ +E++ +E
Sbjct: 54 GLPRLESVAHAAENVLGRFRDGELSVTPYAVSLILESLDTIKGILSVLEQTEAEPAGSDE 113
Query: 127 DLFRRADEFLQGGK--GAEKKPEEEKPKEEVEAKEEEKPEKVEE 168
DL R + +G + A P E P A E+ +E
Sbjct: 114 DLINRLNAMAEGRELPKAGAAPAAEAPAAAPAATPAAPAEQPDE 157
>emb|CAA07177.1| (AJ006687) CheA [Caulobacter crescentus]
Length = 762
Score = 289 bits (733), Expect = 6e-77
Identities = 160/395 (40%), Positives = 241/395 (60%), Gaps = 12/395 (3%)
Query: 376 PKKPVIETPRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQ-IGER--LGDRELFEAL 432
PK +E P S +I++D +D+L++LVGELVI + L Q +GE L L
Sbjct: 347 PKATPVEVPGPGQS-VIRVDPERIDRLIDLVGELVINQAMLAQGVGEYGIAPSSNLAMGL 405
Query: 433 STLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTIL 492
L + E+QD +M +R P+ VF + PR+VR++A GK+ VM+G + EVD+T++
Sbjct: 406 DELEHVTREIQDSVMAIRAQPVKSVFQRMPRLVREVANMTGKQARLVMDGENTEVDKTVI 465
Query: 493 EKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDP 552
E+L D + H+LRNA+DHG+E PEER GK G V L A +VI V DDG+GI+
Sbjct: 466 ERLSDPITHMLRNAIDHGLESPEERKAAGKNPEGVVRLAALHRSGRIVIEVSDDGKGINR 525
Query: 553 EKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKS 612
E+V A+++GLI P+ L+DEE NLIFLPGFSTAEK++DVSGRGVGMDVVK V++
Sbjct: 526 ERVFGIAVKKGLIAPD--LQLTDEEIDNLIFLPGFSTAEKISDVSGRGVGMDVVKRSVQA 583
Query: 613 MNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKT 672
+ G IS+ + G+G+TF L LP+++A++ +++ V ET +P+ I+E++ P ++
Sbjct: 584 LGGRISISSRPGQGSTFTLSLPLTLAVLDGMVVDVAGETLVVPLAAIVESLRPKPEEVRP 643
Query: 673 IGG-KPVIVLRGEIIPVVMLHELFGL----PTPQVERFPAIIVDHGAQKVAIGVDELLHK 727
+G V+ +R +P++ + G P P + ++ + A+ D + +
Sbjct: 644 LGPVGSVLAVRDSFVPLIDVGLTLGYREESPHP-TDGVVLLVEGEDGSRAALVADAIHGQ 702
Query: 728 RDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDI 762
R +VIKSL + V G A ATILGDG V LI+D+
Sbjct: 703 RQVVIKSLEQNYQQVEGVAAATILGDGRVALILDV 737
>sp|Q53135|CHEA_RHOSH CHEMOTAXIS PROTEIN CHEA >gi|1075553|pir||S49211 cheA protein -
Rhodobacter sphaeroides >gi|7442989|pir||S70180
chemotaxis protein cheA - Rhodobacter sphaeroides
>gi|510671|emb|CAA56330.1| (X80027) cheA [Rhodobacter
sphaeroides] >gi|7532759|emb|CAB87134.1| (X80205)
chemotaxis histidine protein kinase [Rhodobacter
sphaeroides]
Length = 686
Score = 277 bits (701), Expect = 3e-73
Identities = 164/471 (34%), Positives = 265/471 (55%), Gaps = 26/471 (5%)
Query: 321 FEVVLRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQEKKEEKAEEKKPQP------PK 374
+ + L T E + +I ++ + VE+ E + + + E P+P P
Sbjct: 219 WHLTLETDEPEHQIDEVFEF---VEDLCRLEIRPMAMEAPRTDPDPEPDPEPDPPASGPA 275
Query: 375 QPKKPVIETPRVKISRI-IKIDVGHLDKLMNLVGELVITKGRLEQIGERLG---DRELFE 430
KK E R R +++++ +D+L+N+VGELVI + L Q + G +
Sbjct: 276 AAKKSPAEDHRTSSPRATVRVELDRVDRLINIVGELVINQAMLSQCVQDEGVPPRSPVRN 335
Query: 431 ALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRT 490
L L E+Q+ +M +R I +F + R+ R+ + K++ V EG EVD+T
Sbjct: 336 RLDDFRNLAREIQESVMAIRAQAIKPLFQRMSRIAREASEISQKQIRLVTEGESTEVDKT 395
Query: 491 ILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGI 550
++E+L D L H++RNAVDHGIEP + R+ LGKP VG + L A V+I ++DDG GI
Sbjct: 396 VIERLADPLTHMIRNAVDHGIEPADRRLHLGKPPVGLITLTAAHRSGRVLIEIKDDGAGI 455
Query: 551 DPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVV 610
+ +V + A +GL+ + A L++EE L+F+PGFSTA V+D+SGRGVGMDVVK +
Sbjct: 456 NRPRVLEIAQGKGLVAQD--AQLTEEEIDGLLFMPGFSTASVVSDLSGRGVGMDVVKSAI 513
Query: 611 KSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSIL 670
+S+ G I++ ++ G GTTF + LP+++A++ +++ V +T +P++ I+ET+ P+ +
Sbjct: 514 ESLGGRITIASDPGVGTTFTISLPLTLAVLDGMVVDVGGQTMVVPVSAIVETLRPRPADI 573
Query: 671 KTIG-GKPVIVLRGEIIPVVMLHELFGL--PTPQVERFPAIIVDHGAQKV-AIGVDELLH 726
+G G V+ +RG ++P+V +FG P E ++V+ QK+ A+ VD +
Sbjct: 574 HVLGSGDQVVAIRGSLVPIVDCGSIFGFRAPVRSYEESVLLLVETARQKLCALVVDTIHD 633
Query: 727 KRDIVIKSLGKFLSNVRGFAGATILGDGSVVLII------DIGGLLGGGYS 771
+R +VIK L + G A ATILGDG + LII DI G GG +S
Sbjct: 634 QRQVVIKGLENGYGRIPGVAAATILGDGRIALIIAPEEAVDI-GTSGGTFS 683
>gb|AAB02651.1| (L39965) histidine kinase [Borrelia burgdorferi]
Length = 716
Score = 276 bits (698), Expect = 7e-73
Identities = 155/390 (39%), Positives = 240/390 (60%), Gaps = 6/390 (1%)
Query: 382 ETPRVKIS-RIIKIDVGHLDKLMNLVGELVITKGRLEQIGERLGDRELFEALSTLSRLLT 440
+T R K++ IK+D LD L+NLVGELV + +L + E L + S L+
Sbjct: 322 DTARSKVNIASIKVDSKKLDHLVNLVGELVTIQSKLSKEAENRNSNILNSISAEFSLLIN 381
Query: 441 ELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALV 500
EL+D +R PI +F KF R+V+DL+ +GK + + G D +D++I+EKL + LV
Sbjct: 382 ELRDYTTGLRTVPIEILFVKFQRIVKDLSTSLGKSILYHASGGDTVLDKSIIEKLNEPLV 441
Query: 501 HLLRNAVDHG-IEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKA 559
HL+RN++D + +ER LGK G ++L A + + V++I+ DD RG+D K+ KKA
Sbjct: 442 HLIRNSIDQSKLNRSQERESLGKDPKGIIKLSACQSGDSVIVIIEDDRRGLDKNKILKKA 501
Query: 560 IERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISV 619
IER +I+ A +LS+ + NLIF PGFSTA VTD+SGRGVGMDVVK+ V+S+ G + +
Sbjct: 502 IERNIISDSVAKTLSEIDVYNLIFEPGFSTASSVTDISGRGVGMDVVKKQVESLRGHVVL 561
Query: 620 QTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTIG---GK 676
++E GK T L P+++AII+ L+RV DE + +P++N+ +E + I + G
Sbjct: 562 ESEFGKYTRIKLIFPLTLAIIEGWLVRVKDEHFIVPLSNVESCLESNKLISQIDGIETKS 621
Query: 677 PVIVLRGEIIPVVMLHELFGLPTPQVERFPAIIVDHGAQKVAIGVDELLHKRDIVIKSLG 736
V+ RG +I + L E F + + + ++V+ + K+ I VDE+L + VIK+ G
Sbjct: 622 NVMNYRGSMISYIRLREFFQVSSEKSLSEQVVVVNTNSGKMGIVVDEVLGQHQTVIKAFG 681
Query: 737 -KFLSNVRGFAGATILGDGSVVLIIDIGGL 765
KF+ + G +GATILGDGS+ L++DI +
Sbjct: 682 VKFILELEGVSGATILGDGSLALVVDIDAI 711
>sp|P18769|FRZE_MYXXA GLIDING MOTILITY REGULATORY PROTEIN >gi|94520|pir||A35966
chemotaxis protein frzE - Myxococcus xanthus
>gi|150091|gb|AAA25396.1| (M35192) gliding motility
regulatory protein (frzE) [Myxococcus xanthus]
Length = 777
Score = 272 bits (689), Expect = 8e-72
Identities = 147/381 (38%), Positives = 235/381 (61%), Gaps = 14/381 (3%)
Query: 400 DKLMNLVGELVITKGRLEQIGERLGDRELF------------EALSTLSRLLTELQDEIM 447
D+ + L E+ I+ EQ+ D + + ++TL L ++ D +
Sbjct: 260 DRFLRLAEEIDISNEVREQLDRVESDLHMLRDDAFRFVRRNDDGINTLHGNLAKMADHVA 319
Query: 448 EMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNAV 507
E RL P++ VF+ FPR VR+++R GKEV+ V+E ADI VDR++L + DALVHLLRN+V
Sbjct: 320 EARLVPLSTVFDAFPRAVREMSRTQGKEVDLVIENADIGVDRSMLGDVRDALVHLLRNSV 379
Query: 508 DHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLITP 567
DHG+E P+ R +LGKP GR+ + + + + + I V DDGRGIDPE++++ AI + LI
Sbjct: 380 DHGVESPDTRQQLGKPLNGRIRIRVRVDGDMLHIEVEDDGRGIDPERLRQAAISKRLINA 439
Query: 568 EEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGT 627
+AA+LS+ EAI LIF PGFST ++V+++SGRGVGMDVVK V+++ GS+ V + +G+G+
Sbjct: 440 VQAAALSEREAIELIFRPGFSTRDQVSELSGRGVGMDVVKRKVETLGGSVGVSSRIGRGS 499
Query: 628 TFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTIGGKPVIVLRGEIIP 687
T L+LP S+A+++ LL+R+ D+ Y +P ++ + V P I G + RG+
Sbjct: 500 TITLRLPQSLALMKVLLVRLGDDVYGMPAADVEAVMRVKPDDRLEIFGTLAVRHRGKPTA 559
Query: 688 VVMLHELFGL-PTPQVERFPAIIVDHGAQKVAIGVDELLHKRDIVIKSL-GKFLSNVRGF 745
+V L L GL + ++ PA++V HG A+ VD + +R++ +K G+FL
Sbjct: 560 LVALGPLLGLNGGNRFDKPPAVVVRHGEDHAALVVDGFVDEREVAVKPCGGEFLKAAPFI 619
Query: 746 AGATILGDGSVVLIIDIGGLL 766
AG L DG + +++ + ++
Sbjct: 620 AGTAALEDGRIAVLLHVPDIM 640
>pir||T30313 chemotaxis protein homolog - Pseudomonas aeruginosa
>gi|3241969|gb|AAC23931.1| (U79580) ChpA [Pseudomonas
aeruginosa]
Length = 1638
Score = 250 bits (631), Expect = 5e-65
Identities = 147/388 (37%), Positives = 223/388 (56%), Gaps = 25/388 (6%)
Query: 394 IDVGHLDKLMNLVGELVITKGRLEQIGERLG--DRELFEALSTLSRLLTELQDEIMEMRL 451
+++ +L L L + L + E L +R+ L +R+ TELQ+ +M R+
Sbjct: 1099 LEMDRYSQLQQLSRALFESASDLLDLKETLAAKNRDAETLLLQQARVNTELQEGLMRTRM 1158
Query: 452 TPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGI 511
P + + R+VR +A ++GK+VEFV+ AD E+DRT+LE++ L H+LRNAVDHGI
Sbjct: 1159 VPFDRLVPRLRRIVRQVAGELGKQVEFVVGNADGEMDRTVLERIVAPLEHMLRNAVDHGI 1218
Query: 512 EPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAA 571
E E R GKP G + L RE +++ + DDG GI + V++KAIERGL++ + +
Sbjct: 1219 ESGETRRAAGKPEHGTIRLNIGREGGDILLTLSDDGAGIRLDAVRRKAIERGLMSAD--S 1276
Query: 572 SLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFIL 631
LSD E + + GFSTAEKVT +SGRGVG+DV VK + GS+S+QTE G+GT F +
Sbjct: 1277 DLSDHEVLQFVLESGFSTAEKVTQISGRGVGLDVANSEVKQLGGSVSIQTEPGQGTRFNV 1336
Query: 632 KLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTI-----------------G 674
+LP ++++ +AL++ ++ YA+P+N I + V P L+ + G
Sbjct: 1337 RLPFTVSVNRALMVLSGEDLYAVPLNTIEGIVRVSPYELEALYDQRGEAGLDTPSFEYAG 1396
Query: 675 GKPVIVLRGEIIPVVMLHELFGLPTPQVERFPAIIVDHGAQKVAIGVDELLHKRDIVIKS 734
+ GE++ +L G P P I+V VA+ VD L R+IV+KS
Sbjct: 1397 QSYELKYLGELLNNGQEPKLVGQSLP----LPVILVRSSEHAVAVQVDSLAGSREIVVKS 1452
Query: 735 LGKFLSNVRGFAGATILGDGSVVLIIDI 762
LG + V G +GAT+LGDG VV+I+D+
Sbjct: 1453 LGPQFAGVAGISGATLLGDGRVVVILDL 1480
>pir||E83594 still frameshift probable component of chemotactic signal
transduction system PA0413 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946268|gb|AAG03802.1|AE004478_7 (AE004478) still
frameshift probable component of chemotactic signal
transduction system [Pseudomonas aeruginosa]
Length = 2472
Score = 250 bits (631), Expect = 5e-65
Identities = 147/388 (37%), Positives = 223/388 (56%), Gaps = 25/388 (6%)
Query: 394 IDVGHLDKLMNLVGELVITKGRLEQIGERLG--DRELFEALSTLSRLLTELQDEIMEMRL 451
+++ +L L L + L + E L +R+ L +R+ TELQ+ +M R+
Sbjct: 1933 LEMDRYSQLQQLSRALFESASDLLDLKETLAAKNRDAETLLLQQARVNTELQEGLMRTRM 1992
Query: 452 TPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDHGI 511
P + + R+VR +A ++GK+VEFV+ AD E+DRT+LE++ L H+LRNAVDHGI
Sbjct: 1993 VPFDRLVPRLRRIVRQVAGELGKQVEFVVGNADGEMDRTVLERIVAPLEHMLRNAVDHGI 2052
Query: 512 EPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEEAA 571
E E R GKP G + L RE +++ + DDG GI + V++KAIERGL++ + +
Sbjct: 2053 ESGETRRAAGKPEHGTIRLNIGREGGDILLTLSDDGAGIRLDAVRRKAIERGLMSAD--S 2110
Query: 572 SLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTFIL 631
LSD E + + GFSTAEKVT +SGRGVG+DV VK + GS+S+QTE G+GT F +
Sbjct: 2111 DLSDHEVLQFVLESGFSTAEKVTQISGRGVGLDVANSEVKQLGGSVSIQTEPGQGTRFNV 2170
Query: 632 KLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTI-----------------G 674
+LP ++++ +AL++ ++ YA+P+N I + V P L+ + G
Sbjct: 2171 RLPFTVSVNRALMVLSGEDLYAVPLNTIEGIVRVSPYELEALYDQRGEAGLDTPSFEYAG 2230
Query: 675 GKPVIVLRGEIIPVVMLHELFGLPTPQVERFPAIIVDHGAQKVAIGVDELLHKRDIVIKS 734
+ GE++ +L G P P I+V VA+ VD L R+IV+KS
Sbjct: 2231 QSYELKYLGELLNNGQEPKLVGQSLP----LPVILVRSSEHAVAVQVDSLAGSREIVVKS 2286
Query: 735 LGKFLSNVRGFAGATILGDGSVVLIIDI 762
LG + V G +GAT+LGDG VV+I+D+
Sbjct: 2287 LGPQFAGVAGISGATLLGDGRVVVILDL 2314
>gb|AAC27632.1| (AF076485) defective in fruiting DifE [Myxococcus xanthus]
Length = 770
Score = 246 bits (621), Expect = 8e-64
Identities = 136/374 (36%), Positives = 218/374 (57%), Gaps = 16/374 (4%)
Query: 263 PEGEEKEYLIRVYFSPDAPLKGPRSYLILQDLESIGDIVQTNPNRGDIENGNLLEGKFFE 322
PE + + +R+ +P + G R++L+ + L ++G +V+ P +++ G + +G +
Sbjct: 361 PETLAQRWAVRLRIAPTCQVPGVRAFLVHKRLTNLGTLVELRPALEELKAGRIPDGNI-Q 419
Query: 323 VVLRTKEDKSKIVQLIKKHPDVENFVVTEAEAEEKQEKKEEKAEEKKPQPPKQPKKPVIE 382
+ L T ++ I +K +VE V A A QP P
Sbjct: 420 LELETPAGEAGIHAALKNVAEVEVLSVKPAVAAPVV------------QPTLVPVPDGAR 467
Query: 383 TPRVKISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGERLGDRE---LFEALSTLSRLL 439
SR +++ LD ++ VGEL++ RL ++G+ L + L E + L L+
Sbjct: 468 ASSDTASRTVRVRTELLDYFLDTVGELMLATARLREVGKVLPENTRPALEEGVYRLHTLV 527
Query: 440 TELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDAL 499
+L D++M R+TP++ + ++ PR RD+AR+ +EV+ V+ GA+IE+DR ILE+L D L
Sbjct: 528 KDLHDKVMTARMTPLSLITDRLPRAARDIARRKEREVDLVITGAEIELDRAILEELSDPL 587
Query: 500 VHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKA 559
+HLLRN +DHG+E PE+R K GRV + KR ++ V+I + DDGRG+DP K+K A
Sbjct: 588 LHLLRNCIDHGLEAPEDRAAAKKGPRGRVLVAVKRARDRVIIELEDDGRGMDPAKLKNAA 647
Query: 560 IERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISV 619
+ RGL++ E A L+D EA L LPG STA+ +TD+SGRGVGMD VK VV+++ G++ +
Sbjct: 648 VSRGLLSAEAAVRLTDREAFMLSCLPGVSTAKDITDISGRGVGMDAVKRVVENVGGTLEI 707
Query: 620 QTEVGKGTTFILKL 633
+E G+GT F L+L
Sbjct: 708 DSERGRGTRFTLRL 721
Score = 75.7 bits (183), Expect = 2e-12
Identities = 39/117 (33%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 6 DMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGTAAT 65
DMS+YL F+++A D +++L ++ LE+ E + ++ +FR AH++KG A++
Sbjct: 4 DMSRYLGLFISEATDHLEALGRDLVELER--------EGSSSAVDSMFRHAHSVKGMASS 55
Query: 66 MGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIEESGSEGD 122
MGF ++ AH++E+L DA+R + L ++VDL+L D + A V + E D
Sbjct: 56 MGFEPIAIVAHRVEDLVDAVRQDRGRLDRDLVDLLLTAADTMLAQVRAVAEGKQPDD 112
>pir||S75938 chemotaxis protein cheA (EC 2.7.-.-) - Synechocystis sp. (strain PCC
6803) >gi|1001298|dbj|BAA10785.1| (D64006) chemotaxis
protein CheA [Synechocystis sp.]
Length = 1402
Score = 240 bits (607), Expect = 3e-62
Identities = 138/398 (34%), Positives = 227/398 (56%), Gaps = 27/398 (6%)
Query: 395 DVGHLDKLMNLVGELVITKGRLEQIGERLGDRELF-----EALSTLSRLLTELQDEIMEM 449
D +D L +L + Q+ E + D LF + + ++L L+DE+M
Sbjct: 849 DALEMDSYGTLSAQLQEILEEMMQLEEAVDDVVLFSRAANQTVDAQKQMLFSLRDELMWA 908
Query: 450 RLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLLRNAVDH 509
R+ P+ E+ +FPR++RD+A K K V+ + G + VDR LEKL D L+HLLRNA DH
Sbjct: 909 RMLPLGEILQRFPRLLRDMASKFNKPVQIKLHGTGVLVDRLALEKLYDPLLHLLRNAFDH 968
Query: 510 GIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIERGLITPEE 569
GIE R+ +GKP +G +E+ A + N +I +RDDG G++ EK+ ++A+ERGL+T E+
Sbjct: 969 GIEDEGTRLAMGKPAMGTIEVHAYHQGNQTIIEMRDDGGGLNREKILRRAVERGLVTEEQ 1028
Query: 570 AASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTEVGKGTTF 629
L+ E+ NLIF P FSTA++V+++SGRGVG+DVV++ ++++ G+I V + G+GT F
Sbjct: 1029 GQRLTTEQIDNLIFEPNFSTADQVSELSGRGVGLDVVRQQLQALKGTIVVSSRPGRGTVF 1088
Query: 630 ILKLPISMAIIQALLIRV-----MDETYAIPINNILETIEVDPSILKTIGGKPVIVLRGE 684
L+LP+++ I + L+ V AIP +++ E + + +KT GG+ + +
Sbjct: 1089 SLRLPLTLTIAKLLVCLVGQNQGAPTAIAIPSDSVAELMVPTATQIKTSGGQRFLHWQEL 1148
Query: 685 IIPVVMLHELF----------------GLPTPQVERFPAIIVDHGAQKVAIGVDELLHKR 728
IP+ L +L +P P P +++ G Q A+ V+ L+ ++
Sbjct: 1149 TIPIYSLTQLLPYHCPLSEQQTSKLLTTVPQPDNWHLPLVLLRLGQQYYALEVNRLVTEQ 1208
Query: 729 DIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
++VIK L GATIL DG+++ +++ G LL
Sbjct: 1209 ELVIKPFSSLLPAPSYLYGATILADGTLIPVVN-GALL 1245
>pir||G83183 probable chemotaxis sensor/effector fusion protein PA3704
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9949868|gb|AAG07091.1|AE004789_11 (AE004789)
probable chemotaxis sensor/effector fusion protein
[Pseudomonas aeruginosa]
Length = 769
Score = 229 bits (579), Expect = 6e-59
Identities = 119/329 (36%), Positives = 194/329 (58%), Gaps = 6/329 (1%)
Query: 442 LQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVH 501
L D + R+ P A+V + RMVRDL R +GK+V ++EG +VDR +LEKL L H
Sbjct: 292 LYDAALASRMRPFADVLSGQARMVRDLGRSLGKQVRLLVEGESTQVDRDVLEKLEAPLTH 351
Query: 502 LLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIE 561
LLRNAVDHGIE PE R+ GKP GR+ + A+ +V+ + DDG GID +++++ +
Sbjct: 352 LLRNAVDHGIEAPETRLAAGKPAEGRITIRARHHAGMLVLELSDDGGGIDLQRLRETVLN 411
Query: 562 RGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQT 621
R T E A LS+EE + +FLPGFS E+VT+VSGRGVG+D V+ +V+ + G + ++
Sbjct: 412 RQFATAETVAQLSEEELLAFLFLPGFSMREQVTEVSGRGVGLDAVQHMVRQLRGGVRMEQ 471
Query: 622 EVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTIGGKPVIVL 681
G+G F +++P++++++++L++ + +E YA P+ +I E++ + + G+
Sbjct: 472 RQGQGALFHVEVPLTLSVVRSLVVEIGEEAYAFPLAHIERMCELEAEEIVQLEGRQHFWY 531
Query: 682 RGEIIPVVMLHELFGLPTPQVER----FPAIIVDHGAQKVAIGVDELLHKRDIVIKSLGK 737
G + +V +L L P+ R P ++V + V+ + +R +V+ L
Sbjct: 532 EGRHVGLVSAAQL--LQRPESSRTEGAIPVVVVRDRDAVYGVAVERFVGERTLVVMPLDP 589
Query: 738 FLSNVRGFAGATILGDGSVVLIIDIGGLL 766
L VR + +L DGS VLI+D+ LL
Sbjct: 590 RLGKVRDVSAGALLDDGSPVLILDVEDLL 618
>pir||S75284 chemotaxis protein cheA homolog - Synechocystis sp. (strain PCC
6803) >gi|1652275|dbj|BAA17198.1| (D90904) chemotaxis
protein CheA [Synechocystis sp.]
Length = 924
Score = 220 bits (555), Expect = 4e-56
Identities = 124/385 (32%), Positives = 222/385 (57%), Gaps = 16/385 (4%)
Query: 388 ISRIIKIDVGHLDKLMNLVGELVITKGRLEQIGE-----RLGDRELFEALSTLSRLLTEL 442
I+ ++ D +D + G L + + Q+ E L +R+L E L +S+ L +L
Sbjct: 393 IAGLVDFDALEMDSYTAVHGILQRFQELMVQVQEIQEDVDLVERDLQETLIQMSQSLHQL 452
Query: 443 QDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVHL 502
E+ + RL P + F + + L + K V+FV+EG + V+ IL++L L HL
Sbjct: 453 DSELTQSRLVPFRGLAQSFAQPLEKLGDRHKKPVQFVIEGENTLVEVAILDQLRTPLTHL 512
Query: 503 LRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVKKKAIER 562
+RNA DHG+E ER GK G + L A N V+I V DDGRGIDPEK+ +KA+E
Sbjct: 513 IRNAFDHGLEFVPERQAQGKLPEGTITLSASTANNQVLITVSDDGRGIDPEKISRKAMEL 572
Query: 563 GLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSISVQTE 622
G +TPE+ ++ + + ++ +F PGFSTA +V+++SGRG+G+D+VK++++S+ G+++V+T+
Sbjct: 573 GWLTPEQLGTIGEAQMLDFLFQPGFSTAAEVSNLSGRGLGLDIVKQMIESLRGTLTVETK 632
Query: 623 VGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTIGGKPVIVLR 682
+G+G+ F++++P+S+ I+ LL+R A P ++L + +D +K G+ + +
Sbjct: 633 LGQGSRFLIRIPLSLNIVPLLLVRYQQRLLAFPSESVLRILPLDDYPIK--NGR--VEWQ 688
Query: 683 GEIIPVVMLHELFG-------LPTPQVERFPAIIVDHGAQKVAIGVDELLHKRDIVIKSL 735
+I+ L E+ P+P + ++V+ G + + V++++ +R +V+K+L
Sbjct: 689 SQIMEACPLDEVLPQIYPQGFSPSPGLPHKVGLMVNLGDRSALLTVEQIVDERTLVVKAL 748
Query: 736 GKFLSNVRGFAGATILGDGSVVLII 760
AG T+LG G VV ++
Sbjct: 749 DAITPIPSYVAGCTVLGTGEVVPVL 773
>pir||F82618 chemotaxis-related protein kinase XF1952 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107052|gb|AAF84754.1|AE004014_8 (AE004014)
chemotaxis-related protein kinase [Xylella fastidiosa]
Length = 1755
Score = 219 bits (553), Expect = 7e-56
Identities = 122/332 (36%), Positives = 197/332 (58%), Gaps = 6/332 (1%)
Query: 437 RLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLG 496
R+ +ELQD +M R+ P + + R+VR K V V+EG E+DR +++++
Sbjct: 1281 RVSSELQDGLMRARMVPFNSILPRLRRVVRQAEADTNKHVHLVLEGTHGELDRNVIDRMV 1340
Query: 497 DALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDDGRGIDPEKVK 556
L H+LRNAV HG+E PE+R GK G + + +RE + +++ V DDG G+D + ++
Sbjct: 1341 APLEHMLRNAVAHGLEMPEKRRAAGKADEGTITIQLQREGSEILLKVSDDGAGLDRDAIQ 1400
Query: 557 KKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGS 616
++A +RGLI + +LSD E LIF GF+T ++V ++GRGVGMDVV+ V + GS
Sbjct: 1401 RRAKQRGLIPID--VNLSDAELDGLIFTSGFTTYDEVNQLAGRGVGMDVVRSEVSQLGGS 1458
Query: 617 ISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTIGGK 676
+S+ + G G TF L+LP ++A+ QA+ IR+ T+A+P+ +++ + K+
Sbjct: 1459 VSINSLRGHGVTFTLRLPQTLAVTQAVFIRIGQSTFAVPVASVIGIGRIAHERYKS--DH 1516
Query: 677 PVIVLRGEIIPVVMLHELFGLPTPQVER--FPAIIVDHGAQKVAIGVDELLHKRDIVIKS 734
GE + L L G P +R P ++V G +VA+ VDE+L R+IV+K
Sbjct: 1517 ESYHYDGEQYVLYDLGFLIGQPGIHADRQQVPLLLVRTGDLRVAVAVDEVLGNREIVVKP 1576
Query: 735 LGKFLSNVRGFAGATILGDGSVVLIIDIGGLL 766
+G +++V G GATI GDG V++I+D+ L+
Sbjct: 1577 VGLQIASVPGIYGATITGDGCVIVILDLAPLV 1608
>pir||S76044 hypothetical protein slr0322 - Synechocystis sp. (strain PCC 6803)
>gi|1001400|dbj|BAA10022.1| (D63999) chemotaxis protein
CheA [Synechocystis sp.]
Length = 1095
Score = 217 bits (547), Expect = 4e-55
Identities = 123/351 (35%), Positives = 204/351 (58%), Gaps = 15/351 (4%)
Query: 427 ELFEALSTLSRLLTELQDEIMEMRLTPIAEVFNKFPRMVRDLARKMGKEVEFVMEGADIE 486
E + TL ++ T+LQ+ + + R+ P + ++ PR +R+++ K+ K+V +EG D+
Sbjct: 415 ETDQVARTLRQVTTQLQEGMTKSRMVPFTQTADRLPRAIREVSMKLNKKVNLEVEGGDVL 474
Query: 487 VDRTILEKLGDALVHLLRNAVDHGIEPPEERVKLGKPRVGRVELIAKREKNHVVIIVRDD 546
+D+ ILE L + + HL+ NA+ HGIE P ER KLGK G + + A + N +I V DD
Sbjct: 475 IDKMILEHLYNPMTHLVNNAITHGIETPAERQKLGKSPEGHLAVRAFLQGNQTLITVSDD 534
Query: 547 GRGIDPEKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVV 606
G GI+ E VK+KA+E+GLI+ EA SLS E +L+F GFST + D +GRGVG+DVV
Sbjct: 535 GAGINTEMVKQKAVEKGLISRMEAQSLSQSEVYDLLFHAGFSTKDTADDFAGRGVGLDVV 594
Query: 607 KEVVKSMNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVD 666
+ + + G+I++++ VGKGTTF ++LP++++I +AL A P++ + +T +
Sbjct: 595 RTSLIDIRGAINIESTVGKGTTFTIRLPLTLSICKALCCLSDRARIAFPMDGVEDTRDYL 654
Query: 667 PSILKTIGGKPVIVLRGE---IIPVVMLHELFGLPT----------PQVERFPAIIVDHG 713
P + T V G+ ++P+ L +L Q E +I+ G
Sbjct: 655 PKDIVTDEDGQKCVKYGKEALLLPLYPLKDLLNYNRQLSRGSVYGGKQEEDVVRVIIARG 714
Query: 714 A--QKVAIGVDELLHKRDIVIKSLGKFLSNVRGFAGATILGDGSVVLIIDI 762
+ +A+ +D++L + +IVIK + + G AGAT+ GDGS++ I D+
Sbjct: 715 SSGNLLALQIDQVLGEEEIVIKQIEGPIPKPPGIAGATVRGDGSIMPIADV 765
>sp|P21813|CHEA_ENTAE CHEMOTAXIS PROTEIN CHEA >gi|95552|pir||A32302 chemotaxis protein
cheA - Enterobacter aerogenes (fragment)
>gi|148347|gb|AAA24795.1| (M26411) cheA [Enterobacter
aerogenes]
Length = 226
Score = 153 bits (383), Expect = 6e-36
Identities = 85/216 (39%), Positives = 135/216 (62%), Gaps = 7/216 (3%)
Query: 553 EKVKKKAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKS 612
EK+ KA +GL + ++SDEE LIF PGFSTAE+VTDVSGRGVGMDVVK ++
Sbjct: 1 EKILAKAAAQGLAVTD---TMSDEEVGMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQE 57
Query: 613 MNGSISVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKT 672
M G + + + GKGT+ + LP+++AI+ + ++V +E + +P+N ++E+++ L
Sbjct: 58 MGGHVEIHSRAGKGTSIRILLPLTLAILDGMSVKVNEEVFILPLNAVMESLQPQREDLHP 117
Query: 673 I-GGKPVIVLRGEIIPVVMLHELFGLPTPQVERFPAIIV--DHGAQKVAIGVDELLHKRD 729
+ GG+ ++ +RGE +P+V L+ +F + E I+V ++ A+ VD+L+ +
Sbjct: 118 MAGGERMLQVRGEYLPLVELYRVFECAGAKTEATQGIVVILQSAGRRNALLVDQLIGQHQ 177
Query: 730 IVIKSLGKFLSNVRGFAGATILGDGSVVLIIDIGGL 765
V K+L V G + ATILGDGSV LI+D+ L
Sbjct: 178 CV-KNLETNYRKVPGISAATILGDGSVALIVDVSAL 212
>gb|AAA23564.1| (M13463) cheA peptide [Escherichia coli]
Length = 225
Score = 148 bits (370), Expect = 2e-34
Identities = 82/211 (38%), Positives = 127/211 (59%), Gaps = 6/211 (2%)
Query: 558 KAIERGLITPEEAASLSDEEAINLIFLPGFSTAEKVTDVSGRGVGMDVVKEVVKSMNGSI 617
KA +GL E ++SD+E LIF PGFSTAE+VTDVSGRGVGMDVVK ++ M G +
Sbjct: 4 KAASQGLTVSE---NMSDDEVAMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQKMGGHV 60
Query: 618 SVQTEVGKGTTFILKLPISMAIIQALLIRVMDETYAIPINNILETIEVDPSILKTIGGKP 677
+Q++ G GTT + LP+++AI+ + +RV DE + +P+N ++E+++ + L + G
Sbjct: 61 EIQSKQGTGTTIRILLPLTLAILDGMSVRVADEVFILPLNAVMESLQPREADLHPLAGAS 120
Query: 678 VIVLRG-EIIPVVMLHELFGLPTPQVERFPAIIV--DHGAQKVAIGVDELLHKRDIVIKS 734
G I P ++F + + E I+V G ++ A+ VD+L+ + + +K+
Sbjct: 121 GCWKCGVNICPSSNCGKVFNVAGAKTEATQGIVVILQSGGRRYALLVDQLIGQHQVAVKN 180
Query: 735 LGKFLSNVRGFAGATILGDGSVVLIIDIGGL 765
L V G + ATILGDGSV LI+D+ L
Sbjct: 181 LESNYRKVPGISAATILGDGSVALIVDVSAL 211
>gb|AAF35254.1|AF060170_1 (AF060170) AS12 protein [Homo sapiens]
Length = 202
Score = 90.1 bits (220), Expect = 8e-17
Identities = 41/105 (39%), Positives = 72/105 (68%)
Query: 399 LDKLMNLVGELVITKGRLEQIGERLGDRELFEALSTLSRLLTELQDEIMEMRLTPIAEVF 458
+D+++N VGE+VI + + L E+ S +S L+ E+ D + +R+ PI + F
Sbjct: 32 VDEVINFVGEVVIASAGANLLARGSSNGPLQESTSVVSGLMEEILDGALHLRMIPIGDTF 91
Query: 459 NKFPRMVRDLARKMGKEVEFVMEGADIEVDRTILEKLGDALVHLL 503
N+F R+VRD+++++GK++E ++ GAD E+D+T +EK+GD L+HLL
Sbjct: 92 NRFRRVVRDVSQELGKDIEPLISGADTELDKTEVEKIGDPLMHLL 136
>pir||S76596 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001703|dbj|BAA10540.1| (D64004) chemotaxis protein
CheA [Synechocystis sp.]
Length = 315
Score = 70.2 bits (169), Expect = 8e-11
Identities = 32/113 (28%), Positives = 68/113 (59%), Gaps = 7/113 (6%)
Query: 3 TLEDMSQYLDEFLADARDRIDSLSNAILTLEKIVKEGGSEEEKAELINQIFRDAHTLKGT 62
T D + L F+ +A++ +++L IL L K+V++ +E +N++FR AH++KG
Sbjct: 12 TTLDQQKILGYFIEEAQEHLETLERGILDLGKVVQD-------SEQVNEMFRAAHSIKGG 64
Query: 63 AATMGFMKLSETAHKMENLFDAIRNSQIELTPEVVDLVLDFLDAIEAMVNNIE 115
AA +G+ + +TAH++E+ F ++ Q+ + ++ L L+ D ++ +V ++
Sbjct: 65 AAMLGYTSIQKTAHRLEDAFKVLKEHQLPVDQKLESLFLNGYDVLQDLVEKLQ 117
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.314 0.138 0.373
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 285739246
Number of Sequences: 2977
Number of extensions: 13313378
Number of successful extensions: 99602
Number of sequences better than 1.0e-10: 56
Number of HSP's better than 0.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 99245
Number of HSP's gapped (non-prelim): 145
length of query: 772
length of database: 189,106,746
effective HSP length: 62
effective length of query: 710
effective length of database: 152,000,552
effective search space: 107920391920
effective search space used: 107920391920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 169 (70.2 bits)