BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1333 (cheA-like) DE:CHEA HISTIDINE KINASE related protein
(212 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75002 chea histidine kinase related protein PAB1333 - Pyro... 418 e-116
pir||B71161 hypothetical protein PH0487 - Pyrococcus horikoshii ... 369 e-101
gi|11498644 conserved hypothetical protein [Archaeoglobus fulgid... 100 2e-20
dbj|BAB06153.1| (AP001515) inhibition of CheR-mediated methylati... 99 4e-20
pir||G72318 chemotaxis protein CheC - Thermotoga maritima (strai... 96 2e-19
pir||C71161 hypothetical protein PH0488 - Pyrococcus horikoshii ... 95 5e-19
pir||B75002 chea histidine kinase PAB1334 - Pyrococcus abyssi (s... 91 1e-17
sp|P40403|CHEC_BACSU CHEMOTAXIS PROTEIN CHEC >gi|1075909|pir||A5... 78 1e-13
>pir||C75002 chea histidine kinase related protein PAB1333 - Pyrococcus abyssi
(strain Orsay) >gi|5458971|emb|CAB50457.1| (AJ248288)
CHEA HISTIDINE KINASE related protein [Pyrococcus
abyssi]
Length = 212
Score = 418 bits (1062), Expect = e-116
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MDIVAENIEEYVKNLDEFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKN 60
MDIVAENIEEYVKNLDEFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKN
Sbjct: 1 MDIVAENIEEYVKNLDEFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKN 60
Query: 61 VPEIVGEDVKVVVYIELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSF 120
VPEIVGEDVKVVVYIELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSF
Sbjct: 61 VPEIVGEDVKVVVYIELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSF 120
Query: 121 MEMGNILISAFANALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDI 180
MEMGNILISAFANALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDI
Sbjct: 121 MEMGNILISAFANALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDI 180
Query: 181 KISGVEFEEHFLLFPKPEDMKKILEKLLGGLA 212
KISGVEFEEHFLLFPKPEDMKKILEKLLGGLA
Sbjct: 181 KISGVEFEEHFLLFPKPEDMKKILEKLLGGLA 212
>pir||B71161 hypothetical protein PH0487 - Pyrococcus horikoshii
>gi|3256892|dbj|BAA29575.1| (AP000002) 212aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 212
Score = 369 bits (937), Expect = e-101
Identities = 182/212 (85%), Positives = 198/212 (92%)
Query: 1 MDIVAENIEEYVKNLDEFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKN 60
MDIV E EEY+KNLDE +KSALLETFNIGASHAATALSEMTG+EVNISVPDLK++ IKN
Sbjct: 1 MDIVDEKWEEYLKNLDEMSKSALLETFNIGASHAATALSEMTGKEVNISVPDLKIIAIKN 60
Query: 61 VPEIVGEDVKVVVYIELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSF 120
VPE+VGEDVKV VYIELGKDFSSHAFF ADY+D LRMFD+IMGNP GTT E+D+MVKSSF
Sbjct: 61 VPEVVGEDVKVAVYIELGKDFSSHAFFIADYEDALRMFDIIMGNPLGTTKEMDEMVKSSF 120
Query: 121 MEMGNILISAFANALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDI 180
ME+GNILISAFANALS+FLGITIEQTPP+L IDFLPAILD ALADIGK+CDYTIILQT+I
Sbjct: 121 MEVGNILISAFANALSEFLGITIEQTPPSLAIDFLPAILDFALADIGKYCDYTIILQTNI 180
Query: 181 KISGVEFEEHFLLFPKPEDMKKILEKLLGGLA 212
KIS V+FEEHFLLFPKPEDMKKILEKLLGG A
Sbjct: 181 KISDVKFEEHFLLFPKPEDMKKILEKLLGGFA 212
>gi|11498644 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483078|pir||G69379 conserved hypothetical protein
AF1039 - Archaeoglobus fulgidus
>gi|2649551|gb|AAB90201.1| (AE001031) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 205
Score = 100 bits (246), Expect = 2e-20
Identities = 60/202 (29%), Positives = 108/202 (52%), Gaps = 10/202 (4%)
Query: 12 VKNLDEFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKNVPEIVGEDVKV 71
+++ E AL E NIG AAT+LS+M GR + +SVP+ +V+I + + + + V
Sbjct: 7 IEDFGEMELDALKELGNIGVGKAATSLSQMLGRRIEMSVPEAVIVKIPELHKYINAEEMV 66
Query: 72 VVYI----ELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSFMEMGNIL 127
+ ++ S + ++ ++++G+ ++MV S+ ME+GNIL
Sbjct: 67 AGVVTGLEDIENGHSGFLYITFPEKSSKKLAEILLGDSSD-----EEMVDSTLMEIGNIL 121
Query: 128 ISAFANALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDIKISGVEF 187
S+F +A ++ LGI + TPP+ DF A++D ++ + + DY +I +T ++ S E
Sbjct: 122 SSSFCDAAAEMLGIVLLPTPPSFGRDFAIAVIDAVVSQLAEKSDYVVIFETKLEESENEI 181
Query: 188 EEHFLLFPKPEDMKKILEKLLG 209
E +L P + + IL KLLG
Sbjct: 182 EALVMLIPNEKFVSYIL-KLLG 202
>dbj|BAB06153.1| (AP001515) inhibition of CheR-mediated methylation of MCPs
[Bacillus halodurans]
Length = 209
Score = 99.1 bits (243), Expect = 4e-20
Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 4/206 (1%)
Query: 10 EYVKNLDEFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKNVPEIVG--E 67
E + L F L E NIGA +AATALS++ + ++++VP++ +V + + E +G E
Sbjct: 2 ENLSELQAFHLDILKEIGNIGAGNAATALSQLLQKTIDMNVPNVHIVSFQELTEWIGGPE 61
Query: 68 DVKVVVYIELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTT-ELDDMVKSSFMEMGNI 126
+V ++ + D FF A ++ M + G + E+DD+ S+ E+GNI
Sbjct: 62 EVVAATFLRIEGDAPGSMFFLATLEEAKGMVAQLTGASRSSLEGEMDDLSMSALKELGNI 121
Query: 127 LISAFANALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDIKISGV- 185
L ++ +AL+ F + + + P L+ID + AIL+ L + + D I++ T I G
Sbjct: 122 LAGSYLSALADFTKLKLYPSVPGLSIDMIGAILNYGLIPLSQIGDEAIVIDTQISEEGER 181
Query: 186 EFEEHFLLFPKPEDMKKILEKLLGGL 211
HF L P PE + L GL
Sbjct: 182 RGAGHFFLLPDPESFDVMFSSLGVGL 207
>pir||G72318 chemotaxis protein CheC - Thermotoga maritima (strain MSB8)
>gi|4981440|gb|AAD35985.1|AE001755_8 (AE001755)
chemotaxis protein CheC [Thermotoga maritima]
Length = 205
Score = 96.3 bits (236), Expect = 2e-19
Identities = 62/201 (30%), Positives = 103/201 (50%), Gaps = 10/201 (4%)
Query: 15 LDEFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKNVPEIVGEDVKVVVY 74
+ E K L E NIGA +AATA+S M ++V ISVP++++V I V I + ++VV
Sbjct: 3 ISERQKDLLKEIGNIGAGNAATAISYMINKKVEISVPNVEIVPISKVIFIAKDPEEIVVG 62
Query: 75 IELGK--DFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSFMEMGNILISAFA 132
+++ D V ++ +++ G P LD+ S+ E+GNI+ +
Sbjct: 63 VKMPVTGDIEGSVLLIMGTTVVKKILEILTGRAPDNLLNLDEFSASALREIGNIMCGTYV 122
Query: 133 NALSQFLGITIEQTPPALTIDFLPAILDLA----LADIGKFCDYTIILQTDIKISGVE-- 186
+AL+ FLG I+ PP L ID + AI A L D + D + ++T +K+ E
Sbjct: 123 SALADFLGFKIDTLPPQLVIDMISAIFAEASIEELEDNSE--DQIVFVETLLKVEEEEEP 180
Query: 187 FEEHFLLFPKPEDMKKILEKL 207
+ ++ PKP + KI E++
Sbjct: 181 LTSYMMMIPKPGYLVKIFERM 201
>pir||C71161 hypothetical protein PH0488 - Pyrococcus horikoshii
>gi|3256893|dbj|BAA29576.1| (AP000002) 211aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 211
Score = 95.2 bits (233), Expect = 5e-19
Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 4/194 (2%)
Query: 17 EFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKNVPEIVGE---DVKVVV 73
E K E NI SHA TALS+M G + + PD+ +V +I+ E V
Sbjct: 5 ELYKDIFKEASNIAMSHALTALSQMIGGPIEMEAPDVDIVSRVEFLKILAERGVSKGFTV 64
Query: 74 YIELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSFMEMGNILISAFAN 133
++ + S L + V++G PG+ TELD+M KS+ ME+GNILIS + +
Sbjct: 65 MFDITEGMSGLTILQFPRQSALNISSVLLGMEPGSMTELDEMGKSAIMEVGNILISVYTD 124
Query: 134 ALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDIKISGVEFEEHFLL 193
LS LG + +PP +L +D+ + + ++ ++ + E +F +
Sbjct: 125 ILSNLLGEPVSLSPPKPAESLYDIEKELGRSDL-RNVNSVVVFKSKFYKEDIRVESYFYI 183
Query: 194 FPKPEDMKKILEKL 207
P PE K+++KL
Sbjct: 184 IPTPESFTKLVKKL 197
>pir||B75002 chea histidine kinase PAB1334 - Pyrococcus abyssi (strain Orsay)
>gi|5458970|emb|CAB50456.1| (AJ248288) CHEA HISTIDINE
KINASE [Pyrococcus abyssi]
Length = 212
Score = 90.9 bits (222), Expect = 1e-17
Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 4/194 (2%)
Query: 17 EFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKNVPEIVGE---DVKVVV 73
E K E NI SHA T+LS+M G + + PD+++V +++ E V
Sbjct: 5 ELYKDIFKEASNIAMSHALTSLSQMIGGPIEMEAPDVEIVSRAEFLKLLAERGVSKGFTV 64
Query: 74 YIELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSFMEMGNILISAFAN 133
++ + S L + V+MG PG+ ELD+M KS+ ME+GNILISA+ +
Sbjct: 65 MFDVTEGLSGLTILQFPKHSALNISAVLMGMEPGSMEELDEMGKSAIMEVGNILISAYTD 124
Query: 134 ALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDIKISGVEFEEHFLL 193
LS +G + +PP +L D+ + + ++ ++ + E +F L
Sbjct: 125 ILSNLIGEPVSLSPPKPAESLYDIEKELGRPDL-RNVNSIVVFKSKFYKEDIGVESYFYL 183
Query: 194 FPKPEDMKKILEKL 207
P PE K+++KL
Sbjct: 184 VPTPESFTKLVKKL 197
>sp|P40403|CHEC_BACSU CHEMOTAXIS PROTEIN CHEC >gi|1075909|pir||A55216 chemotactic
methyltransferase inhibitor protein - Bacillus subtilis
>gi|289302|gb|AAA61468.1| (M20144) ORFA [Bacillus
subtilis] >gi|2634017|emb|CAB13518.1| (Z99112) alternate
gene name: ylxJ [Bacillus subtilis]
Length = 209
Score = 77.6 bits (188), Expect = 1e-13
Identities = 46/191 (24%), Positives = 96/191 (50%), Gaps = 6/191 (3%)
Query: 23 LLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKNVPEIVG-EDVKVV-VYIELGKD 80
L E NIGA H+A+A++++ R++++ VP K++ + + G DV V +++ + D
Sbjct: 15 LREVGNIGAGHSASAMAQLLNRKIDMEVPFAKLLSFDELVDFFGGADVPVASIFLRMEGD 74
Query: 81 FSSHAFFAADYDDVLRMFDVIMGNPPGTTTEL--DDMVKSSFMEMGNILISAFANALSQF 138
+ FF + + ++GNP +L D M S+ E+GNIL ++ AL+
Sbjct: 75 LTGSMFFIMPFFQAEQFIRELIGNPDFDIEDLGEDHMSSSALHELGNILAGSYLTALADL 134
Query: 139 LGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDI--KISGVEFEEHFLLFPK 196
+ + + P +++D A++ L ++ + ++ I++ T I + E + H + P
Sbjct: 135 TKLQLYPSVPEVSLDMFGAVISEGLMELSQVGEHAIVVDTSIFDQSHQQELKAHMFMLPD 194
Query: 197 PEDMKKILEKL 207
+ +K+ L
Sbjct: 195 YDSFEKLFVAL 205
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.139 0.385
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74144813
Number of Sequences: 2977
Number of extensions: 2843093
Number of successful extensions: 6772
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6750
Number of HSP's gapped (non-prelim): 12
length of query: 212
length of database: 189,106,746
effective HSP length: 56
effective length of query: 156
effective length of database: 155,591,474
effective search space: 24272269944
effective search space used: 24272269944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)