BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1333 (cheA-like) DE:CHEA HISTIDINE KINASE related protein
         (212 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75002 chea histidine kinase related protein PAB1333 - Pyro...   418  e-116
pir||B71161 hypothetical protein PH0487 - Pyrococcus horikoshii ...   369  e-101
gi|11498644 conserved hypothetical protein [Archaeoglobus fulgid...   100  2e-20
dbj|BAB06153.1| (AP001515) inhibition of CheR-mediated methylati...    99  4e-20
pir||G72318 chemotaxis protein CheC - Thermotoga maritima (strai...    96  2e-19
pir||C71161 hypothetical protein PH0488 - Pyrococcus horikoshii ...    95  5e-19
pir||B75002 chea histidine kinase PAB1334 - Pyrococcus abyssi (s...    91  1e-17
sp|P40403|CHEC_BACSU CHEMOTAXIS PROTEIN CHEC >gi|1075909|pir||A5...    78  1e-13

>pir||C75002 chea histidine kinase related protein PAB1333 - Pyrococcus abyssi
           (strain Orsay) >gi|5458971|emb|CAB50457.1| (AJ248288)
           CHEA HISTIDINE KINASE related protein [Pyrococcus
           abyssi]
           Length = 212
           
 Score =  418 bits (1062), Expect = e-116
 Identities = 212/212 (100%), Positives = 212/212 (100%)

Query: 1   MDIVAENIEEYVKNLDEFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKN 60
           MDIVAENIEEYVKNLDEFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKN
Sbjct: 1   MDIVAENIEEYVKNLDEFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKN 60

Query: 61  VPEIVGEDVKVVVYIELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSF 120
           VPEIVGEDVKVVVYIELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSF
Sbjct: 61  VPEIVGEDVKVVVYIELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSF 120

Query: 121 MEMGNILISAFANALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDI 180
           MEMGNILISAFANALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDI
Sbjct: 121 MEMGNILISAFANALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDI 180

Query: 181 KISGVEFEEHFLLFPKPEDMKKILEKLLGGLA 212
           KISGVEFEEHFLLFPKPEDMKKILEKLLGGLA
Sbjct: 181 KISGVEFEEHFLLFPKPEDMKKILEKLLGGLA 212


>pir||B71161 hypothetical protein PH0487 - Pyrococcus horikoshii
           >gi|3256892|dbj|BAA29575.1| (AP000002) 212aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 212
           
 Score =  369 bits (937), Expect = e-101
 Identities = 182/212 (85%), Positives = 198/212 (92%)

Query: 1   MDIVAENIEEYVKNLDEFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKN 60
           MDIV E  EEY+KNLDE +KSALLETFNIGASHAATALSEMTG+EVNISVPDLK++ IKN
Sbjct: 1   MDIVDEKWEEYLKNLDEMSKSALLETFNIGASHAATALSEMTGKEVNISVPDLKIIAIKN 60

Query: 61  VPEIVGEDVKVVVYIELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSF 120
           VPE+VGEDVKV VYIELGKDFSSHAFF ADY+D LRMFD+IMGNP GTT E+D+MVKSSF
Sbjct: 61  VPEVVGEDVKVAVYIELGKDFSSHAFFIADYEDALRMFDIIMGNPLGTTKEMDEMVKSSF 120

Query: 121 MEMGNILISAFANALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDI 180
           ME+GNILISAFANALS+FLGITIEQTPP+L IDFLPAILD ALADIGK+CDYTIILQT+I
Sbjct: 121 MEVGNILISAFANALSEFLGITIEQTPPSLAIDFLPAILDFALADIGKYCDYTIILQTNI 180

Query: 181 KISGVEFEEHFLLFPKPEDMKKILEKLLGGLA 212
           KIS V+FEEHFLLFPKPEDMKKILEKLLGG A
Sbjct: 181 KISDVKFEEHFLLFPKPEDMKKILEKLLGGFA 212


>gi|11498644 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483078|pir||G69379 conserved hypothetical protein
           AF1039 - Archaeoglobus fulgidus
           >gi|2649551|gb|AAB90201.1| (AE001031) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 205
           
 Score =  100 bits (246), Expect = 2e-20
 Identities = 60/202 (29%), Positives = 108/202 (52%), Gaps = 10/202 (4%)

Query: 12  VKNLDEFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKNVPEIVGEDVKV 71
           +++  E    AL E  NIG   AAT+LS+M GR + +SVP+  +V+I  + + +  +  V
Sbjct: 7   IEDFGEMELDALKELGNIGVGKAATSLSQMLGRRIEMSVPEAVIVKIPELHKYINAEEMV 66

Query: 72  VVYI----ELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSFMEMGNIL 127
              +    ++    S   +         ++ ++++G+        ++MV S+ ME+GNIL
Sbjct: 67  AGVVTGLEDIENGHSGFLYITFPEKSSKKLAEILLGDSSD-----EEMVDSTLMEIGNIL 121

Query: 128 ISAFANALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDIKISGVEF 187
            S+F +A ++ LGI +  TPP+   DF  A++D  ++ + +  DY +I +T ++ S  E 
Sbjct: 122 SSSFCDAAAEMLGIVLLPTPPSFGRDFAIAVIDAVVSQLAEKSDYVVIFETKLEESENEI 181

Query: 188 EEHFLLFPKPEDMKKILEKLLG 209
           E   +L P  + +  IL KLLG
Sbjct: 182 EALVMLIPNEKFVSYIL-KLLG 202


>dbj|BAB06153.1| (AP001515) inhibition of CheR-mediated methylation of MCPs
           [Bacillus halodurans]
           Length = 209
           
 Score = 99.1 bits (243), Expect = 4e-20
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 4/206 (1%)

Query: 10  EYVKNLDEFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKNVPEIVG--E 67
           E +  L  F    L E  NIGA +AATALS++  + ++++VP++ +V  + + E +G  E
Sbjct: 2   ENLSELQAFHLDILKEIGNIGAGNAATALSQLLQKTIDMNVPNVHIVSFQELTEWIGGPE 61

Query: 68  DVKVVVYIELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTT-ELDDMVKSSFMEMGNI 126
           +V    ++ +  D     FF A  ++   M   + G    +   E+DD+  S+  E+GNI
Sbjct: 62  EVVAATFLRIEGDAPGSMFFLATLEEAKGMVAQLTGASRSSLEGEMDDLSMSALKELGNI 121

Query: 127 LISAFANALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDIKISGV- 185
           L  ++ +AL+ F  + +  + P L+ID + AIL+  L  + +  D  I++ T I   G  
Sbjct: 122 LAGSYLSALADFTKLKLYPSVPGLSIDMIGAILNYGLIPLSQIGDEAIVIDTQISEEGER 181

Query: 186 EFEEHFLLFPKPEDMKKILEKLLGGL 211
               HF L P PE    +   L  GL
Sbjct: 182 RGAGHFFLLPDPESFDVMFSSLGVGL 207


>pir||G72318 chemotaxis protein CheC - Thermotoga maritima (strain MSB8)
           >gi|4981440|gb|AAD35985.1|AE001755_8 (AE001755)
           chemotaxis protein CheC [Thermotoga maritima]
           Length = 205
           
 Score = 96.3 bits (236), Expect = 2e-19
 Identities = 62/201 (30%), Positives = 103/201 (50%), Gaps = 10/201 (4%)

Query: 15  LDEFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKNVPEIVGEDVKVVVY 74
           + E  K  L E  NIGA +AATA+S M  ++V ISVP++++V I  V  I  +  ++VV 
Sbjct: 3   ISERQKDLLKEIGNIGAGNAATAISYMINKKVEISVPNVEIVPISKVIFIAKDPEEIVVG 62

Query: 75  IELGK--DFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSFMEMGNILISAFA 132
           +++    D             V ++ +++ G  P     LD+   S+  E+GNI+   + 
Sbjct: 63  VKMPVTGDIEGSVLLIMGTTVVKKILEILTGRAPDNLLNLDEFSASALREIGNIMCGTYV 122

Query: 133 NALSQFLGITIEQTPPALTIDFLPAILDLA----LADIGKFCDYTIILQTDIKISGVE-- 186
           +AL+ FLG  I+  PP L ID + AI   A    L D  +  D  + ++T +K+   E  
Sbjct: 123 SALADFLGFKIDTLPPQLVIDMISAIFAEASIEELEDNSE--DQIVFVETLLKVEEEEEP 180

Query: 187 FEEHFLLFPKPEDMKKILEKL 207
              + ++ PKP  + KI E++
Sbjct: 181 LTSYMMMIPKPGYLVKIFERM 201


>pir||C71161 hypothetical protein PH0488 - Pyrococcus horikoshii
           >gi|3256893|dbj|BAA29576.1| (AP000002) 211aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 211
           
 Score = 95.2 bits (233), Expect = 5e-19
 Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 4/194 (2%)

Query: 17  EFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKNVPEIVGE---DVKVVV 73
           E  K    E  NI  SHA TALS+M G  + +  PD+ +V      +I+ E        V
Sbjct: 5   ELYKDIFKEASNIAMSHALTALSQMIGGPIEMEAPDVDIVSRVEFLKILAERGVSKGFTV 64

Query: 74  YIELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSFMEMGNILISAFAN 133
             ++ +  S            L +  V++G  PG+ TELD+M KS+ ME+GNILIS + +
Sbjct: 65  MFDITEGMSGLTILQFPRQSALNISSVLLGMEPGSMTELDEMGKSAIMEVGNILISVYTD 124

Query: 134 ALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDIKISGVEFEEHFLL 193
            LS  LG  +  +PP           +L  +D+ +  +  ++ ++      +  E +F +
Sbjct: 125 ILSNLLGEPVSLSPPKPAESLYDIEKELGRSDL-RNVNSVVVFKSKFYKEDIRVESYFYI 183

Query: 194 FPKPEDMKKILEKL 207
            P PE   K+++KL
Sbjct: 184 IPTPESFTKLVKKL 197


>pir||B75002 chea histidine kinase PAB1334 - Pyrococcus abyssi (strain Orsay)
           >gi|5458970|emb|CAB50456.1| (AJ248288) CHEA HISTIDINE
           KINASE [Pyrococcus abyssi]
           Length = 212
           
 Score = 90.9 bits (222), Expect = 1e-17
 Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 4/194 (2%)

Query: 17  EFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKNVPEIVGE---DVKVVV 73
           E  K    E  NI  SHA T+LS+M G  + +  PD+++V      +++ E        V
Sbjct: 5   ELYKDIFKEASNIAMSHALTSLSQMIGGPIEMEAPDVEIVSRAEFLKLLAERGVSKGFTV 64

Query: 74  YIELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSFMEMGNILISAFAN 133
             ++ +  S            L +  V+MG  PG+  ELD+M KS+ ME+GNILISA+ +
Sbjct: 65  MFDVTEGLSGLTILQFPKHSALNISAVLMGMEPGSMEELDEMGKSAIMEVGNILISAYTD 124

Query: 134 ALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDIKISGVEFEEHFLL 193
            LS  +G  +  +PP           +L   D+ +  +  ++ ++      +  E +F L
Sbjct: 125 ILSNLIGEPVSLSPPKPAESLYDIEKELGRPDL-RNVNSIVVFKSKFYKEDIGVESYFYL 183

Query: 194 FPKPEDMKKILEKL 207
            P PE   K+++KL
Sbjct: 184 VPTPESFTKLVKKL 197


>sp|P40403|CHEC_BACSU CHEMOTAXIS PROTEIN CHEC >gi|1075909|pir||A55216 chemotactic
           methyltransferase inhibitor protein - Bacillus subtilis
           >gi|289302|gb|AAA61468.1| (M20144) ORFA [Bacillus
           subtilis] >gi|2634017|emb|CAB13518.1| (Z99112) alternate
           gene name: ylxJ [Bacillus subtilis]
           Length = 209
           
 Score = 77.6 bits (188), Expect = 1e-13
 Identities = 46/191 (24%), Positives = 96/191 (50%), Gaps = 6/191 (3%)

Query: 23  LLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKNVPEIVG-EDVKVV-VYIELGKD 80
           L E  NIGA H+A+A++++  R++++ VP  K++    + +  G  DV V  +++ +  D
Sbjct: 15  LREVGNIGAGHSASAMAQLLNRKIDMEVPFAKLLSFDELVDFFGGADVPVASIFLRMEGD 74

Query: 81  FSSHAFFAADYDDVLRMFDVIMGNPPGTTTEL--DDMVKSSFMEMGNILISAFANALSQF 138
            +   FF   +    +    ++GNP     +L  D M  S+  E+GNIL  ++  AL+  
Sbjct: 75  LTGSMFFIMPFFQAEQFIRELIGNPDFDIEDLGEDHMSSSALHELGNILAGSYLTALADL 134

Query: 139 LGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDI--KISGVEFEEHFLLFPK 196
             + +  + P +++D   A++   L ++ +  ++ I++ T I  +    E + H  + P 
Sbjct: 135 TKLQLYPSVPEVSLDMFGAVISEGLMELSQVGEHAIVVDTSIFDQSHQQELKAHMFMLPD 194

Query: 197 PEDMKKILEKL 207
            +  +K+   L
Sbjct: 195 YDSFEKLFVAL 205


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.139    0.385 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74144813
Number of Sequences: 2977
Number of extensions: 2843093
Number of successful extensions: 6772
Number of sequences better than 1.0e-10: 8
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6750
Number of HSP's gapped (non-prelim): 12
length of query: 212
length of database: 189,106,746
effective HSP length: 56
effective length of query: 156
effective length of database: 155,591,474
effective search space: 24272269944
effective search space used: 24272269944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)