BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1334 (PAB1334) DE:CHEA HISTIDINE KINASE
(212 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75002 chea histidine kinase PAB1334 - Pyrococcus abyssi (s... 414 e-115
pir||C71161 hypothetical protein PH0488 - Pyrococcus horikoshii ... 374 e-103
pir||B71161 hypothetical protein PH0487 - Pyrococcus horikoshii ... 95 7e-19
pir||C75002 chea histidine kinase related protein PAB1333 - Pyro... 91 1e-17
gi|11498644 conserved hypothetical protein [Archaeoglobus fulgid... 86 3e-16
pir||G72318 chemotaxis protein CheC - Thermotoga maritima (strai... 82 7e-15
>pir||B75002 chea histidine kinase PAB1334 - Pyrococcus abyssi (strain Orsay)
>gi|5458970|emb|CAB50456.1| (AJ248288) CHEA HISTIDINE
KINASE [Pyrococcus abyssi]
Length = 212
Score = 414 bits (1053), Expect = e-115
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MKKSELYKDIFKEASNIAMSHALTSLSQMIGGPIEMEAPDVEIVSRAEFLKLLAERGVSK 60
MKKSELYKDIFKEASNIAMSHALTSLSQMIGGPIEMEAPDVEIVSRAEFLKLLAERGVSK
Sbjct: 1 MKKSELYKDIFKEASNIAMSHALTSLSQMIGGPIEMEAPDVEIVSRAEFLKLLAERGVSK 60
Query: 61 GFTVMFDVTEGLSGLTILQFPKHSALNISAVLMGMEPGSMEELDEMGKSAIMEVGNILIS 120
GFTVMFDVTEGLSGLTILQFPKHSALNISAVLMGMEPGSMEELDEMGKSAIMEVGNILIS
Sbjct: 61 GFTVMFDVTEGLSGLTILQFPKHSALNISAVLMGMEPGSMEELDEMGKSAIMEVGNILIS 120
Query: 121 AYTDILSNLIGEPVSLSPPKPAESLYDIEKELGRPDLRNVNSIVVFKSKFYKEDIGVESY 180
AYTDILSNLIGEPVSLSPPKPAESLYDIEKELGRPDLRNVNSIVVFKSKFYKEDIGVESY
Sbjct: 121 AYTDILSNLIGEPVSLSPPKPAESLYDIEKELGRPDLRNVNSIVVFKSKFYKEDIGVESY 180
Query: 181 FYLVPTPESFTKLVKKLEKQISEEVEANDEGN 212
FYLVPTPESFTKLVKKLEKQISEEVEANDEGN
Sbjct: 181 FYLVPTPESFTKLVKKLEKQISEEVEANDEGN 212
>pir||C71161 hypothetical protein PH0488 - Pyrococcus horikoshii
>gi|3256893|dbj|BAA29576.1| (AP000002) 211aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 211
Score = 374 bits (951), Expect = e-103
Identities = 186/209 (88%), Positives = 200/209 (94%)
Query: 1 MKKSELYKDIFKEASNIAMSHALTSLSQMIGGPIEMEAPDVEIVSRAEFLKLLAERGVSK 60
MKKSELYKDIFKEASNIAMSHALT+LSQMIGGPIEMEAPDV+IVSR EFLK+LAERGVSK
Sbjct: 1 MKKSELYKDIFKEASNIAMSHALTALSQMIGGPIEMEAPDVDIVSRVEFLKILAERGVSK 60
Query: 61 GFTVMFDVTEGLSGLTILQFPKHSALNISAVLMGMEPGSMEELDEMGKSAIMEVGNILIS 120
GFTVMFD+TEG+SGLTILQFP+ SALNIS+VL+GMEPGSM ELDEMGKSAIMEVGNILIS
Sbjct: 61 GFTVMFDITEGMSGLTILQFPRQSALNISSVLLGMEPGSMTELDEMGKSAIMEVGNILIS 120
Query: 121 AYTDILSNLIGEPVSLSPPKPAESLYDIEKELGRPDLRNVNSIVVFKSKFYKEDIGVESY 180
YTDILSNL+GEPVSLSPPKPAESLYDIEKELGR DLRNVNS+VVFKSKFYKEDI VESY
Sbjct: 121 VYTDILSNLLGEPVSLSPPKPAESLYDIEKELGRSDLRNVNSVVVFKSKFYKEDIRVESY 180
Query: 181 FYLVPTPESFTKLVKKLEKQISEEVEAND 209
FY++PTPESFTKLVKKLE Q+S EVE N+
Sbjct: 181 FYIIPTPESFTKLVKKLESQVSGEVETNE 209
>pir||B71161 hypothetical protein PH0487 - Pyrococcus horikoshii
>gi|3256892|dbj|BAA29575.1| (AP000002) 212aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 212
Score = 94.8 bits (232), Expect = 7e-19
Identities = 57/194 (29%), Positives = 97/194 (49%), Gaps = 4/194 (2%)
Query: 5 ELYKDIFKEASNIAMSHALTSLSQMIGGPIEMEAPDVEIVSRAEFLKLLAERGVSKGFTV 64
E+ K E NI SHA T+LS+M G + + PD++I++ +++ E V
Sbjct: 17 EMSKSALLETFNIGASHAATALSEMTGKEVNISVPDLKIIAIKNVPEVVGE---DVKVAV 73
Query: 65 MFDVTEGLSGLTILQFPKHSALNISAVLMGMEPGSMEELDEMGKSAIMEVGNILISAYTD 124
++ + S AL + ++MG G+ +E+DEM KS+ MEVGNILISA+ +
Sbjct: 74 YIELGKDFSSHAFFIADYEDALRMFDIIMGNPLGTTKEMDEMVKSSFMEVGNILISAFAN 133
Query: 125 ILSNLIGEPVSLSPPKPAESLYDIEKELGRPDL-RNVNSIVVFKSKFYKEDIGVESYFYL 183
LS +G + +PP A + D+ + + ++ ++ D+ E +F L
Sbjct: 134 ALSEFLGITIEQTPPSLAIDFLPAILDFALADIGKYCDYTIILQTNIKISDVKFEEHFLL 193
Query: 184 VPTPESFTKLVKKL 197
P PE K+++KL
Sbjct: 194 FPKPEDMKKILEKL 207
>pir||C75002 chea histidine kinase related protein PAB1333 - Pyrococcus abyssi
(strain Orsay) >gi|5458971|emb|CAB50457.1| (AJ248288)
CHEA HISTIDINE KINASE related protein [Pyrococcus
abyssi]
Length = 212
Score = 90.9 bits (222), Expect = 1e-17
Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 4/194 (2%)
Query: 5 ELYKDIFKEASNIAMSHALTSLSQMIGGPIEMEAPDVEIVSRAEFLKLLAERGVSKGFTV 64
E K E NI SHA T+LS+M G + + PD+++V +++ E V
Sbjct: 17 EFAKSALLETFNIGASHAATALSEMTGREVNISVPDLKVVEIKNVPEIVGE---DVKVVV 73
Query: 65 MFDVTEGLSGLTILQFPKHSALNISAVLMGMEPGSMEELDEMGKSAIMEVGNILISAYTD 124
++ + S L + V+MG PG+ ELD+M KS+ ME+GNILISA+ +
Sbjct: 74 YIELGKDFSSHAFFAADYDDVLRMFDVIMGNPPGTTTELDDMVKSSFMEMGNILISAFAN 133
Query: 125 ILSNLIGEPVSLSPPKPAESLYDIEKELGRPDL-RNVNSIVVFKSKFYKEDIGVESYFYL 183
LS +G + +PP +L D+ + + ++ ++ + E +F L
Sbjct: 134 ALSQFLGITIEQTPPALTIDFLPAILDLALADIGKFCDYTIILQTDIKISGVEFEEHFLL 193
Query: 184 VPTPESFTKLVKKL 197
P PE K+++KL
Sbjct: 194 FPKPEDMKKILEKL 207
>gi|11498644 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483078|pir||G69379 conserved hypothetical protein
AF1039 - Archaeoglobus fulgidus
>gi|2649551|gb|AAB90201.1| (AE001031) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 205
Score = 86.2 bits (210), Expect = 3e-16
Identities = 62/195 (31%), Positives = 99/195 (49%), Gaps = 8/195 (4%)
Query: 5 ELYKDIFKEASNIAMSHALTSLSQMIGGPIEMEAPDVEIVSRAEFLKLL-AERGVSKGFT 63
E+ D KE NI + A TSLSQM+G IEM P+ IV E K + AE V+ T
Sbjct: 12 EMELDALKELGNIGVGKAATSLSQMLGRRIEMSVPEAVIVKIPELHKYINAEEMVAGVVT 71
Query: 64 VMFDVTEGLSGLTILQFPKHSALNISAVLMGMEPGSMEELDEMGKSAIMEVGNILISAYT 123
+ D+ G SG + FP+ S+ ++ +L+G S +E EM S +ME+GNIL S++
Sbjct: 72 GLEDIENGHSGFLYITFPEKSSKKLAEILLG---DSSDE--EMVDSTLMEIGNILSSSFC 126
Query: 124 DILSNLIGEPVSLSPPKPAESLYDIEKELGRPDLRNVNS-IVVFKSKFYKEDIGVESYFY 182
D + ++G + +PP + L + +V+F++K + + +E+
Sbjct: 127 DAAAEMLGIVLLPTPPSFGRDFAIAVIDAVVSQLAEKSDYVVIFETKLEESENEIEALVM 186
Query: 183 LVPTPESFTKLVKKL 197
L+P E F + KL
Sbjct: 187 LIPN-EKFVSYILKL 200
>pir||G72318 chemotaxis protein CheC - Thermotoga maritima (strain MSB8)
>gi|4981440|gb|AAD35985.1|AE001755_8 (AE001755)
chemotaxis protein CheC [Thermotoga maritima]
Length = 205
Score = 81.5 bits (198), Expect = 7e-15
Identities = 58/202 (28%), Positives = 96/202 (46%), Gaps = 6/202 (2%)
Query: 1 MKKSELYKDIFKEASNIAMSHALTSLSQMIGGPIEMEAPDVEIVSRAEFLKLLAERGVSK 60
MK SE KD+ KE NI +A T++S MI +E+ P+VEIV ++ + +A+
Sbjct: 1 MKISERQKDLLKEIGNIGAGNAATAISYMINKKVEISVPNVEIVPISKVI-FIAKDPEEI 59
Query: 61 GFTVMFDVTEGLSGLTILQFPKHSALNISAVLMGMEPGSMEELDEMGKSAIMEVGNILIS 120
V VT + G +L I +L G P ++ LDE SA+ E+GNI+
Sbjct: 60 VVGVKMPVTGDIEGSVLLIMGTTVVKKILEILTGRAPDNLLNLDEFSASALREIGNIMCG 119
Query: 121 AYTDILSNLIGEPVSLSPPK-PAESLYDIEKELGRPDLR-NVNSIVVFKS---KFYKEDI 175
Y L++ +G + PP+ + + I E +L N +VF K +E+
Sbjct: 120 TYVSALADFLGFKIDTLPPQLVIDMISAIFAEASIEELEDNSEDQIVFVETLLKVEEEEE 179
Query: 176 GVESYFYLVPTPESFTKLVKKL 197
+ SY ++P P K+ +++
Sbjct: 180 PLTSYMMMIPKPGYLVKIFERM 201
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.313 0.133 0.355
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73622607
Number of Sequences: 2977
Number of extensions: 2868908
Number of successful extensions: 7238
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7228
Number of HSP's gapped (non-prelim): 9
length of query: 212
length of database: 189,106,746
effective HSP length: 61
effective length of query: 151
effective length of database: 152,599,039
effective search space: 23042454889
effective search space used: 23042454889
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 163 (67.9 bits)