BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1335 (cheD) DE:CHEMOTAXIS PROTEIN CHED
(163 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75002 chemotaxis protein ched PAB1335 - Pyrococcus abyssi ... 324 4e-88
pir||E71161 hypothetical protein PH0490 - Pyrococcus horikoshii ... 299 1e-80
pir||F72318 chemotaxis methylation protein - Thermotoga maritima... 145 4e-34
gi|11498643 conserved hypothetical protein [Archaeoglobus fulgid... 130 1e-29
dbj|BAB06152.1| (AP001515) methylation of methyl-accepting chemo... 127 5e-29
sp|P40404|CHED_BACSU CHEMOTAXIS PROTEIN CHED >gi|1075910|pir||B5... 115 3e-25
emb|CAA07182.1| (AJ006687) CheD [Caulobacter crescentus] 90 2e-17
pir||S61839 hypothetical protein 9 - Rhizobium meliloti >gi|5348... 85 6e-16
gb|AAC25081.1| (AF044495) unknown [Agrobacterium tumefaciens] 82 5e-15
pir||G83623 conserved hypothetical protein PA0174 [imported] - P... 80 2e-14
emb|CAB87132.1| (X80205) CheD protein [Rhodobacter sphaeroides] 77 9e-14
pir||F82379 probable chemotaxis protein CheD VCA1090 [imported] ... 74 1e-12
gb|AAG19390.1| (AE005033) chemotaxis protein; CheD [Halobacteriu... 74 1e-12
>pir||A75002 chemotaxis protein ched PAB1335 - Pyrococcus abyssi (strain Orsay)
>gi|5458969|emb|CAB50455.1| (AJ248288) CHEMOTAXIS
PROTEIN CHED [Pyrococcus abyssi]
Length = 163
Score = 324 bits (821), Expect = 4e-88
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MTREIKVGIGDYAVGKGEGIISTYGLGSCVGITLYDRVTKVGGLLHALLPEAARYGHRGN 60
MTREIKVGIGDYAVGKGEGIISTYGLGSCVGITLYDRVTKVGGLLHALLPEAARYGHRGN
Sbjct: 1 MTREIKVGIGDYAVGKGEGIISTYGLGSCVGITLYDRVTKVGGLLHALLPEAARYGHRGN 60
Query: 61 PAKYVDTGLQLLLKEVLKLGASKFRLEAKLFGGAQMFQNIKSDELKIGERNVQTAKRELK 120
PAKYVDTGLQLLLKEVLKLGASKFRLEAKLFGGAQMFQNIKSDELKIGERNVQTAKRELK
Sbjct: 61 PAKYVDTGLQLLLKEVLKLGASKFRLEAKLFGGAQMFQNIKSDELKIGERNVQTAKRELK 120
Query: 121 KLGIRLVAEDTGGRGGRTIYLDLSTGKVRMRKVIGGQVIEKVY 163
KLGIRLVAEDTGGRGGRTIYLDLSTGKVRMRKVIGGQVIEKVY
Sbjct: 121 KLGIRLVAEDTGGRGGRTIYLDLSTGKVRMRKVIGGQVIEKVY 163
>pir||E71161 hypothetical protein PH0490 - Pyrococcus horikoshii
>gi|3256895|dbj|BAA29578.1| (AP000002) 162aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 162
Score = 299 bits (757), Expect = 1e-80
Identities = 147/161 (91%), Positives = 156/161 (96%)
Query: 3 REIKVGIGDYAVGKGEGIISTYGLGSCVGITLYDRVTKVGGLLHALLPEAARYGHRGNPA 62
+E+KVGIGDYAVGKG GIISTYGLGSCVGITLYDRVTKVGGLLHALLPEAARYGHRGNPA
Sbjct: 2 KEVKVGIGDYAVGKGNGIISTYGLGSCVGITLYDRVTKVGGLLHALLPEAARYGHRGNPA 61
Query: 63 KYVDTGLQLLLKEVLKLGASKFRLEAKLFGGAQMFQNIKSDELKIGERNVQTAKRELKKL 122
KYVDTGLQLLLKEV+KLGASKFRLEAKLFGGAQMF NI+S+ELKIGE+NVQ AKREL+KL
Sbjct: 62 KYVDTGLQLLLKEVIKLGASKFRLEAKLFGGAQMFDNIRSEELKIGEKNVQVAKRELRKL 121
Query: 123 GIRLVAEDTGGRGGRTIYLDLSTGKVRMRKVIGGQVIEKVY 163
GIRLVAEDTGG+GGRTIYLDLSTGKVRMRKV G+VIEKVY
Sbjct: 122 GIRLVAEDTGGKGGRTIYLDLSTGKVRMRKVTEGKVIEKVY 162
>pir||F72318 chemotaxis methylation protein - Thermotoga maritima (strain MSB8)
>gi|4981439|gb|AAD35984.1|AE001755_7 (AE001755)
chemotaxis methylation protein [Thermotoga maritima]
Length = 157
Score = 145 bits (361), Expect = 4e-34
Identities = 73/154 (47%), Positives = 103/154 (66%), Gaps = 5/154 (3%)
Query: 7 VGIGDYAVGKGEGIISTYGLGSCVGITLYDRVTKVGGLLHALLPEAARYGHRGNPAKYVD 66
+GIG+YAV K G+I T GLGSCV + + D V KVG + H +LP++ G P KY D
Sbjct: 5 IGIGEYAVMKNPGVIVTLGLGSCVAVCMRDPVAKVGAMAHVMLPDSG--GKTDKPGKYAD 62
Query: 67 TGLQLLLKEVLKLGASKFRLEAKLFGGAQMFQNIKSDELKIGERNVQTAKRELKKLGIRL 126
T ++ L++E+ K+GA RLEAK+ GGA MF+ S + IG RNV+ K+ LK GI+L
Sbjct: 63 TAVKTLVEELKKMGAKVERLEAKIAGGASMFE---SKGMNIGARNVEAVKKHLKDFGIKL 119
Query: 127 VAEDTGGRGGRTIYLDLSTGKVRMRKVIGGQVIE 160
+AEDTGG R++ ++ TGK+ +RKV GG+ +E
Sbjct: 120 LAEDTGGNRARSVEYNIETGKLLVRKVGGGEQLE 153
>gi|11498643 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448490|pir||F69379 conserved hypothetical protein
AF1038 - Archaeoglobus fulgidus
>gi|2649552|gb|AAB90202.1| (AE001031) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 157
Score = 130 bits (323), Expect = 1e-29
Identities = 65/158 (41%), Positives = 104/158 (65%), Gaps = 3/158 (1%)
Query: 1 MTREIKVGIGDYAVGKGEGIISTYGLGSCVGITLYDRVTKVGGLLHALLPEAARYGHRGN 60
M EI VGIG++ V KG ++ T GLGSCVGI LYD ++GGL H +LP++ R
Sbjct: 1 MGSEILVGIGEFRVAKG-AVLKTIGLGSCVGIALYDPKLRLGGLAHVMLPQSGNGTKRS- 58
Query: 61 PAKYVDTGLQLLLKEVLKLGASKFRLEAKLFGGAQMFQNIKSDELKIGERNVQTAKRELK 120
AKY D ++++ + + +LG+ + R+ AK+ GGAQ+F+++ D L+IG+RN + + L+
Sbjct: 59 -AKYADHAVEMMTEAMERLGSDRKRIVAKMAGGAQIFKHMTMDMLRIGDRNAEAIRTILR 117
Query: 121 KLGIRLVAEDTGGRGGRTIYLDLSTGKVRMRKVIGGQV 158
GIR+V+ED GG GRT+Y + G++ ++ GG++
Sbjct: 118 DYGIRIVSEDLGGDEGRTVYFFTNDGRMLVKYSRGGEL 155
>dbj|BAB06152.1| (AP001515) methylation of methyl-accepting chemotaxis protein
[Bacillus halodurans]
Length = 162
Score = 127 bits (317), Expect = 5e-29
Identities = 70/159 (44%), Positives = 100/159 (62%), Gaps = 2/159 (1%)
Query: 1 MTREIKVGIGDYAVGKGEGIISTYGLGSCVGITLYDRVTKVGGLLHALLPEAA-RYGHRG 59
M +KVG+ D V I T GLGSCVG+ LYD V KV G+ H +LP++A
Sbjct: 1 MNDVVKVGMADLNVVTPPHTIRTAGLGSCVGVVLYDDVKKVAGMAHIMLPDSALGKKQEF 60
Query: 60 NPAKYVDTGLQLLLKEVLKLGASKFRLEAKLFGGAQMFQ-NIKSDELKIGERNVQTAKRE 118
N AKY DT L LLL ++ +GA ++ L+AK+ GGAQMF +D ++IG+RNV+ K++
Sbjct: 61 NRAKYADTALDLLLSKLEAIGAKRYSLKAKMAGGAQMFSFASNNDMMRIGQRNVEAVKKK 120
Query: 119 LKKLGIRLVAEDTGGRGGRTIYLDLSTGKVRMRKVIGGQ 157
L++L I ++AED GG GRTI + T ++ +R V G+
Sbjct: 121 LRELSIPILAEDVGGSNGRTIEFNPETKRLSIRTVHQGE 159
>sp|P40404|CHED_BACSU CHEMOTAXIS PROTEIN CHED >gi|1075910|pir||B55216 chemotaxis
methylation system protein cheD - Bacillus subtilis
>gi|289303|gb|AAA61469.1| (M20144) ORFB [Bacillus
subtilis] >gi|2634018|emb|CAB13519.1| (Z99112) alternate
gene name: ylxK [Bacillus subtilis]
Length = 166
Score = 115 bits (285), Expect = 3e-25
Identities = 63/155 (40%), Positives = 92/155 (58%), Gaps = 2/155 (1%)
Query: 5 IKVGIGDYAVGKGEGIISTYGLGSCVGITLYDRVTKVGGLLHALLPEAA-RYGHRGNPAK 63
IKVGI D + + I T GLGSCVG+ LYD+ + GL+H +LP++ N AK
Sbjct: 9 IKVGIADVKIARFPDTIRTSGLGSCVGLVLYDKEKQTAGLVHVMLPDSTLSKTAELNRAK 68
Query: 64 YVDTGLQLLLKEVLKLGASKFRLEAKLFGGAQMFQ-NIKSDELKIGERNVQTAKRELKKL 122
Y DT +Q + +++ G KF L+AKL GG++MF+ +D +KIG RNV K +L
Sbjct: 69 YADTAVQTTIDMLIEAGCRKFALKAKLAGGSEMFKFKSTNDLMKIGPRNVLAIKEQLSLF 128
Query: 123 GIRLVAEDTGGRGGRTIYLDLSTGKVRMRKVIGGQ 157
I +++EDTGG GRTI + + + +R V G+
Sbjct: 129 NIPIISEDTGGSSGRTIEFEPKSCMLHIRTVKQGE 163
>emb|CAA07182.1| (AJ006687) CheD [Caulobacter crescentus]
Length = 187
Score = 89.7 bits (219), Expect = 2e-17
Identities = 52/153 (33%), Positives = 85/153 (54%), Gaps = 6/153 (3%)
Query: 3 REIKVGI--GDYAVGKGEGIISTYGLGSCVGITLYDRVTKVGGLLHALLPEAARYGHRGN 60
R +KV + G+ V ++ T LGSC+ + D + VGG+ H LLP++ G+
Sbjct: 11 RAVKVHVTQGESHVTADPNVVMTTVLGSCIAACIRDPQSGVGGMNHFLLPDSGDGRRDGD 70
Query: 61 PAKYVDTGLQLLLKEVLKLGASKFRLEAKLFGGAQMFQNIKSDELKIGERNVQTAKRELK 120
+Y +++L+ ++LK GA + RLEAK+FGGA++F + +G N A+R L+
Sbjct: 71 AVRYGAYAMEVLINDLLKRGARRERLEAKIFGGAKLFDGLSD----VGASNAAFAERFLR 126
Query: 121 KLGIRLVAEDTGGRGGRTIYLDLSTGKVRMRKV 153
GI +V+ TGG R + ++G+VR R V
Sbjct: 127 DEGIPIVSSSTGGVSARRVEFWPASGRVRQRLV 159
>pir||S61839 hypothetical protein 9 - Rhizobium meliloti
>gi|534842|gb|AAA86679.1| (U13166) ORF9 [Sinorhizobium
meliloti]
Length = 183
Score = 84.7 bits (206), Expect = 6e-16
Identities = 56/154 (36%), Positives = 82/154 (52%), Gaps = 5/154 (3%)
Query: 3 REIKVGIGDYAVGKGEGIISTYGLGSCVGITLYDRVTKVGGLLHALLPEAARYGHRGNPA 62
R + V G++ V I+ + LGSCV + D VGG+ H LLP +A G A
Sbjct: 8 RRVHVIQGEFKVVNDPDIVLSTILGSCVAACMRDPAAGVGGMNHFLLPGSATSPSSGADA 67
Query: 63 -KYVDTGLQLLLKEVLKLGASKFRLEAKLFGGAQMFQNIKSDELKIGERNVQTAKRELKK 121
+Y ++LL+ +LK GA + RLEAK+FGGA+ + +GE+N A++ L
Sbjct: 68 TRYGVHLMELLINGLLKQGARRDRLEAKIFGGARTIARFSN----VGEQNAAFARQFLMD 123
Query: 122 LGIRLVAEDTGGRGGRTIYLDLSTGKVRMRKVIG 155
GIR+V E TGG GR + S+G+ R + G
Sbjct: 124 EGIRIVGESTGGDHGRKLEYWPSSGRARQYALTG 157
>gb|AAC25081.1| (AF044495) unknown [Agrobacterium tumefaciens]
Length = 181
Score = 81.5 bits (198), Expect = 5e-15
Identities = 53/153 (34%), Positives = 80/153 (51%), Gaps = 5/153 (3%)
Query: 10 GDYAVGKGEGIISTYGLGSCVGITLYDRVTKVGGLLHALLPEAARYGHRGNPAKYVDTGL 69
G+Y V ++ T LGSCV L D V +GG+ H LLP G+ +Y +
Sbjct: 14 GEYKVVSDPDVVMTTILGSCVAACLRDPVAGLGGMNHFLLPGTGNV-TGGDATRYGVHLM 72
Query: 70 QLLLKEVLKLGASKFRLEAKLFGGAQMFQNIKSDELKIGERNVQTAKRELKKLGIRLVAE 129
+LL+ +LK GA + RLEAK+FGGA+ + + +GE+N A + LK GI +++
Sbjct: 73 ELLINGLLKQGARRDRLEAKVFGGAKTIASFSN----VGEQNAIFAMQFLKDEGIPVISS 128
Query: 130 DTGGRGGRTIYLDLSTGKVRMRKVIGGQVIEKV 162
TGG GR I +G+ R + G + + V
Sbjct: 129 STGGDHGRKIEFWPVSGRARQHPLSGAETQKTV 161
>pir||G83623 conserved hypothetical protein PA0174 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946007|gb|AAG03564.1|AE004455_5 (AE004455)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 200
Score = 79.6 bits (193), Expect = 2e-14
Identities = 51/151 (33%), Positives = 81/151 (52%), Gaps = 5/151 (3%)
Query: 5 IKVGIGDYAVGKGEGIISTYGLGSCVGITLYDRVTKVGGLLHALLPEAARYGHRGNP-AK 63
+K+ G+Y GE ++ LGSCV + L D + + G+ H +LPE G +P A+
Sbjct: 24 VKLLPGEY-FASGEDLVIVTVLGSCVSVCLRDPLNGIAGMNHFMLPERGLGGDPASPSAR 82
Query: 64 YVDTGLQLLLKEVLKLGASKFRLEAKLFGGAQMFQNIKSDELKIGERNVQTAKRELKKLG 123
Y ++LL+ +L LGAS+ RL+AK+FGG + + I + IG+RNV+ L
Sbjct: 83 YGSHAMELLINRMLALGASRERLQAKVFGGGSVLRQISA---AIGQRNVEFTLDYLATER 139
Query: 124 IRLVAEDTGGRGGRTIYLDLSTGKVRMRKVI 154
I L+A D R IY G+V ++ ++
Sbjct: 140 IPLLASDVLEAFPRKIYFFPRNGRVLVKSLV 170
>emb|CAB87132.1| (X80205) CheD protein [Rhodobacter sphaeroides]
Length = 199
Score = 77.3 bits (187), Expect = 9e-14
Identities = 48/124 (38%), Positives = 67/124 (53%), Gaps = 6/124 (4%)
Query: 26 LGSCVGITLYDRVTKVGGLLHALLPEAARYGHRGNPAKYVDTGLQLLLKEVLKLGASKFR 85
LGSC+ + D V VGG+ H LLP A +Y ++LL+ +LKLGA++ R
Sbjct: 37 LGSCICTCMCDPVAGVGGMNHFLLPSADV--EDAQHLRYGSHAMELLINALLKLGAARQR 94
Query: 86 LEAKLFGGAQMFQNIKSDELKIGERNVQTAKRELKKLGIRLVAEDTGGRGGRTIYLDLST 145
+EAK+FGGA M + + IG+ N A+R L+ GIR A GG R I T
Sbjct: 95 IEAKIFGGAMMTPQLGA----IGQANAAFARRYLRDEGIRCTAHSLGGNRARRIRFWPKT 150
Query: 146 GKVR 149
G+V+
Sbjct: 151 GRVQ 154
>pir||F82379 probable chemotaxis protein CheD VCA1090 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658536|gb|AAF96982.1| (AE004434) chemotaxis protein
CheD, putative [Vibrio cholerae]
Length = 233
Score = 73.7 bits (178), Expect = 1e-12
Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 17/159 (10%)
Query: 5 IKVGIGDYAVGKGEGIISTYGLGSCVGITLYDRVTKVGGLLHALLPEAARYGHR------ 58
+KV G + II T GLGSCV +D KVGG+ H LLP ++ +
Sbjct: 50 VKVMPGGVYATSDQEIIHT-GLGSCVSACAWDIEMKVGGMNHFLLPFNNQFESQHWHPQA 108
Query: 59 --GNPAKYVDTGLQLLLKEVLKLGASKFRLEAKLFGGAQM--FQNIKSDELKIGERNVQT 114
+ ++Y +++L+ +L +GA + RL+ KLFGGA + +Q++ +GE+NV+
Sbjct: 109 LLSDSSRYGCYAMEVLINRLLSMGAERERLKFKLFGGAHLMGYQSL------VGEKNVEF 162
Query: 115 AKRELKKLGIRLVAEDTGGRGGRTIYLDLSTGKVRMRKV 153
K+ + +VA+D GG R + D TG+ ++++
Sbjct: 163 VLEYAKREKLNVVAQDLGGAQPRKLLFDPQTGQAWVKRI 201
>gb|AAG19390.1| (AE005033) chemotaxis protein; CheD [Halobacterium sp. NRC-1]
Length = 109
Score = 73.7 bits (178), Expect = 1e-12
Identities = 45/106 (42%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 48 LLPEAARYGHRGNPAKYVDTGLQLLLKEVLKLGASKFRLEAKLFGGAQMFQNIKSDELKI 107
+LPEA G PAKYVD+GL ++ +L+LGAS L AKL GG+ M D +
Sbjct: 1 MLPEAD--GPVDTPAKYVDSGLDEMVSALLRLGASPSTLTAKLAGGSTMLDLSIGD--SV 56
Query: 108 GERNVQTAKRELKKLGIRLVAEDTGGRGGRTIYLDLSTGKVRMRKV 153
G RNV A+R L I L+A +TGG GR++ S+G V + +V
Sbjct: 57 GSRNVSAAERALADADIELLASETGGDSGRSVSFSPSSGDVTIDRV 102
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.142 0.397
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60694468
Number of Sequences: 2977
Number of extensions: 2533819
Number of successful extensions: 5745
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5721
Number of HSP's gapped (non-prelim): 13
length of query: 163
length of database: 189,106,746
effective HSP length: 54
effective length of query: 109
effective length of database: 156,788,448
effective search space: 17089940832
effective search space used: 17089940832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)