BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1336 (tlpC) DE:methyl-accepting chemotaxis protein (tlpC)
(739 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75001 methyl-accepting chemotaxis protein (tlpc) PAB1336 -... 1413 0.0
pir||F71161 probable chemotaxis protein - Pyrococcus horikoshii ... 1160 0.0
pir||B75158 sensory rhodopsin II transducer (htr-ii) (methyl-acc... 415 e-115
pir||F71197 probable methyl-accepting chemotaxis protein - Pyroc... 413 e-114
pir||D71155 probable methyl-accepting chemotaxis protein - Pyroc... 329 8e-89
pir||H75006 methyl-accepting chemotaxis related protein PAB1308 ... 321 2e-86
sp|P39217|TLPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPB >g... 259 7e-68
sp|P39215|MCPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB (H... 252 7e-66
pir||A54078 methyl-accepting chemotaxis protein mcpB - Bacillus ... 252 1e-65
sp|P39214|MCPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPA (H... 242 1e-62
sp|P39216|TLPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPA >g... 236 8e-61
dbj|BAB05546.1| (AP001513) methyl-accepting chemotaxis protein [... 229 8e-59
pir||B83107 chemotactic transducer PctA PA4309 [imported] - Pseu... 216 8e-55
dbj|BAA23412.1| (D86947) chemotactic transducer [Pseudomonas aer... 215 2e-54
dbj|BAB05994.1| (AP001515) methyl-accepting chemotaxis protein [... 211 3e-53
dbj|BAB07622.1| (AP001520) methyl-accepting chemotaxis protein [... 206 5e-52
gb|AAG34154.1|AF312876_1 (AF312876) methyl-accepting chemotaxis ... 205 1e-51
pir||C83107 chemotactic transducer PctB PA4310 [imported] - Pseu... 201 2e-50
pir||H83106 chemotactic transducer PctC PA4307 [imported] - Pseu... 199 6e-50
pir||A72254 methyl-accepting chemotaxis protein - Thermotoga mar... 199 1e-49
dbj|BAA23413.1| (D86947) chemotactic transducer [Pseudomonas aer... 198 1e-49
dbj|BAA75352.1| (AB011838) metyl-accepting chemotaxis protein [B... 196 6e-49
dbj|BAB07634.1| (AP001520) methyl-accepting chemotaxis protein [... 195 1e-48
dbj|BAA23410.1| (D86947) chemotactic transducer [Pseudomonas aer... 193 6e-48
pir||H71317 probable methyl-accepting chemotaxis protein (mcp2-1... 190 3e-47
pir||D82218 methyl-accepting chemotaxis protein VC1289 [imported... 183 5e-45
gb|AAG19270.1| (AE005023) Htr18 transducer; Htr18 [Halobacterium... 182 9e-45
pir||E72379 methyl-accepting chemotaxis protein - Thermotoga mar... 182 1e-44
sp|P54576|MCPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPC >g... 182 1e-44
pir||G82401 methyl-accepting chemotaxis protein VCA0923 [importe... 180 4e-44
pir||E81444 probable methyl-accepting chemotaxis signal transduc... 180 5e-44
gi|11498650 methyl-accepting chemotaxis protein (tlpC-2) [Archae... 180 5e-44
gi|11498639 methyl-accepting chemotaxis protein (tlpC-1) [Archae... 180 6e-44
pir||G72316 methyl-accepting chemotaxis protein - Thermotoga mar... 180 6e-44
pir||F82382 methyl-accepting chemotaxis protein VCA1069 [importe... 178 2e-43
pir||A72428 methyl-accepting chemotaxis protein - Thermotoga mar... 177 4e-43
dbj|BAB07487.1| (AP001519) methyl-accepting chemotaxis protein [... 176 9e-43
sp|P42259|HTR2_NATPH SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (M... 175 2e-42
gb|AAC27628.1| (AF076485) defective in fruiting DifA [Myxococcus... 173 5e-42
gb|AAG34158.1|AF312879_1 (AF312879) methyl-accepting chemotaxis ... 171 2e-41
dbj|BAB04595.1| (AP001510) methyl-accepting chemotaxis protein [... 170 4e-41
pir||C72291 methyl-accepting chemotaxis protein - Thermotoga mar... 170 5e-41
pir||E82481 methyl-accepting chemotaxis protein VCA0268 [importe... 170 5e-41
pir||F72288 methyl-accepting chemotaxis protein - Thermotoga mar... 169 7e-41
pir||E82314 methyl-accepting chemotaxis protein VC0514 [imported... 169 9e-41
pir||T44989 transducer protein trII [imported] - Haloarcula vall... 168 2e-40
pir||H81431 methyl-accepting chemotaxis signal transduction prot... 168 3e-40
gb|AAG20060.1| (AE005085) Htr3 transducer; Htr3 [Halobacterium s... 166 6e-40
pir||T48840 transducer protein basT [validated] - Halobacterium ... 166 6e-40
gb|AAB69316.1| (AF012922) methyl-accepting chemotaxis protein [T... 165 2e-39
sp|Q48318|HTR5_HALSA HALOBACTERIAL TRANSDUCER PROTEIN V >gi|1127... 165 2e-39
pir||T44938 transducer protein htpV [similarity] - Halobacterium... 163 5e-39
pir||F70028 transmembrane receptor taxis protein homolog yvaQ - ... 163 7e-39
dbj|BAB07582.1| (AP001520) methyl-accepting chemotaxis protein [... 162 9e-39
pir||B82110 methyl-accepting chemotaxis protein VC2161 [imported... 161 2e-38
sp|P42258|HTR2_HALVA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (M... 161 3e-38
gb|AAG19257.1| (AE005021) Htr6 transducer; Htr6 [Halobacterium s... 160 4e-38
pir||B81251 probable methyl-accepting chemotaxis signal transduc... 160 4e-38
dbj|BAB07619.1| (AP001520) methyl-accepting chemotaxis protein [... 159 8e-38
gb|AAB17882.1| (U75437) transducer HtC protein [Halobacterium sa... 159 1e-37
gb|AAG19968.1| (AE005078) Htr17 transducer; Htr17 [Halobacterium... 159 1e-37
pir||E82273 accessory colonization factor AcfB VC0840 [imported]... 157 3e-37
sp|P39209|TLPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPC >g... 157 5e-37
gb|AAG19812.1| (AE005065) Htr8 transducer; Htr8 [Halobacterium s... 156 7e-37
sp|P33741|HTRI_HALHA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (MET... 155 1e-36
gb|AAG19122.1| (AE005010) Htr16 transducer; Htr16 [Halobacterium... 155 1e-36
pir||B69896 methyl-accepting chemotaxis protein homolog yoaH - B... 155 1e-36
gb|AAA21387.1| (L25660) accessory colonization factor [Vibrio ch... 155 1e-36
pir||E83067 probable chemotaxis transducer PA4633 [imported] - P... 154 3e-36
pir||T44262 transducer protein htrVI [similarity] - Halobacteriu... 154 3e-36
dbj|BAA06432.1| (D30762) methyl-accepting chemotaxis protein Tl... 153 4e-36
pir||C83012 probable chemotaxis transducer PA5072 [imported] - P... 153 6e-36
sp|Q02929|CPS_CLOTM PUTATIVE SENSORY TRANSDUCER PROTEIN >gi|4777... 153 8e-36
gb|AAG18922.1| (AE004994) Htr14 transducer; Htr14 [Halobacterium... 152 1e-35
gb|AAG19986.1| (AE005080) Htr5 transducer; Htr5 [Halobacterium s... 151 3e-35
pir||E75590 methyl-accepting chemotaxis-related protein - Deinoc... 150 4e-35
sp|Q48317|HTR4_HALSA HALOBACTERIAL TRANSDUCER PROTEIN IV >gi|112... 150 4e-35
gb|AAD34887.1|AF141674_1 (AF141674) putative chemotaxis chemorec... 150 7e-35
gb|AAG19801.1| (AE005064) Htr10 transducer; Htr10 [Halobacterium... 150 7e-35
pir||B71160 probable methyl-accepting chemotaxis protein - Pyroc... 150 7e-35
pir||S75285 methyl-accepting chemotaxis protein homolog sll1294 ... 149 9e-35
pir||T44253 transducer protein htrVIII [validated] - Halobacteri... 149 9e-35
gb|AAG19266.1| (AE005022) Htr4 transducer; Htr4 [Halobacterium s... 149 1e-34
pir||H75002 methyl-accepting chemotaxis protein PAB1026 - Pyroco... 149 1e-34
gb|AAD13223.1| (AF100302) methyl-accepting chemotaxis protein [P... 148 1e-34
pir||F75590 methyl-accepting chemotaxis protein - Deinococcus ra... 148 2e-34
pir||C83440 probable chemotaxis transducer PA1646 [imported] - P... 148 3e-34
gb|AAC04467.1| (U33210) methyl accepting chemotaxis homolog [Tre... 146 6e-34
sp|Q48319|HTR6_HALSA HALOBACTERIAL TRANSDUCER PROTEIN VI >gi|112... 146 7e-34
gb|AAD13198.1| (AF096317) putative methyl-accepting chemotaxis p... 146 7e-34
gb|AAG19381.1| (AE005032) Htr15 transducer; Htr15 [Halobacterium... 146 7e-34
sp|P33955|HTR1_HALSA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (MET... 146 1e-33
gi|10954729 hypothetical chemoreceptor gene~similar to orf2 gene... 146 1e-33
pir||T44978 transducer protein hemAT [validated] - Halobacterium... 145 2e-33
gb|AAG34155.1|AF312877_1 (AF312877) methyl-accepting chemotaxis ... 145 2e-33
pir||G82490 methyl-accepting chemotaxis protein VCA0176 [importe... 144 3e-33
gb|AAG19989.1| (AE005080) Htr2 transducer; Htr2 [Halobacterium s... 143 5e-33
pir||T44849 transducer protein car [validated] - Halobacterium s... 143 6e-33
sp|P71410|HTR2_HALSA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (M... 142 1e-32
sp|Q02755|MCPC_SALTY METHYL-ACCEPTING CHEMOTAXIS CITRATE TRANSDU... 142 1e-32
pir||B82215 methyl-accepting chemotaxis protein VC1313 [imported... 141 2e-32
dbj|BAB04284.1| (AP001509) methyl-accepting chemotaxis protein [... 141 3e-32
dbj|BAB05228.1| (AP001512) methyl-accepting chemotaxis protein [... 141 3e-32
gb|AAC46419.1| (U81828) methylation accepting chemotaxis protein... 139 1e-31
pir||A83314 probable chemotaxis transducer PA2654 [imported] - P... 139 1e-31
pir||S74988 methyl-accepting chemotaxis protein slr1044 - Synech... 139 1e-31
pir||T44597 transducer protein htpVI [similarity] - Halobacteriu... 138 2e-31
pir||G83313 probable chemotaxis transducer PA2652 [imported] - P... 138 2e-31
pir||T44606 transducer protein htpIV [similarity] - Halobacteriu... 138 2e-31
pir||F83280 probable chemotaxis transducer PA2920 [imported] - P... 138 3e-31
gi|10954717 hypothetical chemoreceptor gene~similar to orf2 gene... 137 4e-31
pir||B82203 methyl-accepting chemotaxis protein VC1405 [imported... 137 4e-31
pir||C83080 probable chemotaxis transducer PA4520 [imported] - P... 137 4e-31
pir||F82174 methyl-accepting chemotaxis protein VC1643 [imported... 136 8e-31
gb|AAG13635.1| (AF036940) putative chemotaxis protein [Ralstonia... 136 1e-30
pir||B82204 methyl-accepting chemotaxis protein VC1413 [imported... 136 1e-30
pir||T44964 transducer protein car [validated] - Halobacterium s... 136 1e-30
gb|AAD13638.1| (U84257) methyl-accepting chemotaxis protein B [T... 135 1e-30
gb|AAC46418.1| (AF022807) putative methyl accepting chemotaxis ... 134 2e-30
pir||C83490 probable chemotaxis transducer PA1251 [imported] - P... 134 2e-30
pir||S75940 methyl-accepting chemotaxis protein sll0041 - Synech... 134 3e-30
sp|Q00986|MCPA_CAUCR CHEMORECEPTOR MCPA (METHYL-ACCEPTING CHEMOT... 133 6e-30
pir||S72163 methyl-accepting chemotaxis protein mcpA - Rhizobium... 133 7e-30
pir||H83324 probable chemotaxis transducer PA2573 [imported] - P... 133 7e-30
pir||E83041 probable chemotaxis transducer PA4844 [imported] - P... 133 7e-30
sp|P21822|MCPS_ENTAE METHYL-ACCEPTING CHEMOTAXIS SERINE TRANSDUC... 132 1e-29
gi|10955066 mclA [Agrobacterium tumefaciens] >gi|8572698|gb|AAF7... 132 1e-29
gb|AAG19717.1| (AE005058) Htr9 transducer; Htr9 [Halobacterium s... 132 1e-29
gb|AAA23566.1| (M13463) methyl-accepting chemotaxis protein II [... 132 1e-29
sp|P07017|MCP2_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN II (MCP... 132 1e-29
emb|CAA70726.1| (Y09534) methyl-accepting chemotaxis proteins [R... 132 1e-29
pir||E83325 probable chemotaxis transducer PA2561 [imported] - P... 132 2e-29
pir||H82503 methyl-accepting chemotaxis protein VCA0068 [importe... 132 2e-29
pir||F82383 methyl-accepting chemotaxis protein VCA1056 [importe... 132 2e-29
pir||A83624 probable chemotaxis transducer PA0176 [imported] - P... 132 2e-29
pir||F82148 methyl-accepting chemotaxis protein VC1859 [imported... 131 2e-29
pir||F81297 probable MCP-type signal transduction protein Cj1506... 131 2e-29
emb|CAA23676.1| (V00373) serine chemoreceptor [Escherichia coli]... 131 2e-29
sp|P02942|MCP1_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN I (MCP-... 131 2e-29
pir||S56581 methyl-accepting chemotaxis protein I - Escherichia ... 131 3e-29
sp|Q48316|HTR3_HALSA HALOBACTERIAL TRANSDUCER PROTEIN III >gi|14... 131 4e-29
pir||H82402 methyl-accepting chemotaxis protein VCA0906 [importe... 131 4e-29
gb|AAC46420.1| (AF036168) putative methyl accepting chemotaxis p... 131 4e-29
pir||H82379 methyl-accepting chemotaxis protein VCA1092 [importe... 130 5e-29
pir||D82386 methyl-accepting chemotaxis protein VCA1034 [importe... 129 8e-29
pir||E82222 methyl-accepting chemotaxis protein VC1248 [imported... 129 1e-28
pir||H83445 probable chemotaxis transducer PA1608 [imported] - P... 129 1e-28
pir||C83184 probable chemotaxis transducer PA3708 [imported] - P... 129 1e-28
pir||H83286 probable chemotaxis transducer PA2867 [imported] - P... 128 2e-28
sp|P05704|MCP3_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN III (MC... 127 4e-28
pir||D75590 methyl-accepting chemotaxis protein - Deinococcus ra... 127 4e-28
pir||C82206 methyl-accepting chemotaxis protein VC1403 [imported... 127 4e-28
gi|10954753 similar to mcpC gene in Rhizobium leguminosarum [Agr... 127 5e-28
gb|AAG34153.1|AF312875_1 (AF312875) methyl-accepting chemotaxis ... 127 5e-28
pir||JC4736 methyl-accepting chemotaxis protein B - Rhodobacter ... 126 7e-28
sp|P42257|PILJ_PSEAE PILJ PROTEIN >gi|540959|pir||S40037 pilJ pr... 126 7e-28
gb|AAG34156.1|AF312878_1 (AF312878) methyl-accepting chemotaxis ... 125 2e-27
pir||B82486 hemolysin secretion protein HylB VCA0220 [imported] ... 125 2e-27
pir||H82147 methyl-accepting chemotaxis protein VC1868 [imported... 125 2e-27
gb|AAC18612.1| (AF016689) Mcp-2 [Treponema pallidum] 124 3e-27
pir||C70174 methyl-accepting chemotaxis protein (mcp-2) homolog ... 124 4e-27
sp|P15492|HLYB_VIBCH HEMOLYSIN SECRETION PROTEIN PRECURSOR >gi|7... 124 4e-27
sp|P43500|FRZC_MYXXA FRZCD PROTEIN (FRIZZY AGGREGATION PROTEIN F... 123 5e-27
pir||T03481 methyl-accepting chemotaxis protein - Rhodobacter ca... 123 8e-27
gb|AAG31044.1|AF264948_6 (AF264948) methyl-accepting chemotaxis ... 123 8e-27
pir||E82395 methyl-accepting chemotaxis protein VCA0974 [importe... 122 1e-26
sp|P55652|Y4SI_RHISN PROBABLE CHEMORECEPTOR Y4SI (METHYL-ACCEPTI... 121 2e-26
gb|AAA82705.1| (U39068) AcfB [Vibrio cholerae] 119 9e-26
dbj|BAB04224.1| (AP001508) methyl-accepting chemotaxis protein [... 119 9e-26
gb|AAG19428.1| (AE005036) Htr13 transducer; Htr13 [Halobacterium... 116 6e-25
pir||T44258 transducer protein htrXIII [similarity] - Halobacter... 115 2e-24
pir||A71978 methyl-accepting chemotaxis protein (MCP) - Helicoba... 113 5e-24
emb|CAB93675.1| (AJ404229) putative receptor protein [Rhodobacte... 112 1e-23
pir||B64530 methyl-accepting chemotaxis transducer (tlpC) - Heli... 112 2e-23
gi|10955060 mclB [Agrobacterium tumefaciens] >gi|8572697|gb|AAF7... 111 2e-23
pir||C64532 methyl-accepting chemotaxis protein (tlpA) - Helicob... 111 2e-23
pir||B71975 methyl-accepting chemotaxis protein (MCP) - Helicoba... 111 3e-23
pir||H81324 probable MCP-domain signal transduction protein Cj11... 104 3e-21
pir||F71975 methyl-accepting chemotaxis protein (MCP) - Helicoba... 104 3e-21
pir||G71373 probable methyl-accepting chemotaxis protein (mcp1) ... 102 2e-20
gb|AAC04555.1| (AF047698) putative methyl-accepting chemotaxis p... 100 5e-20
pir||F71298 probable methyl-accepting chemotaxis protein (mcp2-2... 100 5e-20
pir||F81369 probable MCP-domain signal transduction protein Cj09... 89 2e-16
dbj|BAA96489.1| (AB039333) chemotactic transducer CtpL [Pseudomo... 88 4e-16
pir||T13030 microtubule binding protein D-CLIP-190 - fruit fly ... 80 6e-14
gb|AAF53604.1| (AE003655) CLIP-190 gene product [alt 1] [Drosoph... 80 6e-14
gb|AAC47238.1| (U49263) non-muscle myosin heavy chain II [Caenor... 78 3e-13
pir||T21174 hypothetical protein F20G4.3 - Caenorhabditis elegan... 78 3e-13
sp|P25386|USO1_YEAST INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO... 73 1e-11
gi|6320145 Integrin analogue gene; Uso1p [Saccharomyces cerevisi... 73 1e-11
emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevisiae] 73 1e-11
>pir||H75001 methyl-accepting chemotaxis protein (tlpc) PAB1336 - Pyrococcus
abyssi (strain Orsay) >gi|5458968|emb|CAB50454.1|
(AJ248288) methyl-accepting chemotaxis protein (tlpC)
[Pyrococcus abyssi]
Length = 739
Score = 1413 bits (3617), Expect = 0.0
Identities = 739/739 (100%), Positives = 739/739 (100%)
Query: 1 MQFRKKIILMAIMSAVITMAIFGGVTIYSFNKVYGVIKGEIQAPAIEQGGQLAMSAAEVA 60
MQFRKKIILMAIMSAVITMAIFGGVTIYSFNKVYGVIKGEIQAPAIEQGGQLAMSAAEVA
Sbjct: 1 MQFRKKIILMAIMSAVITMAIFGGVTIYSFNKVYGVIKGEIQAPAIEQGGQLAMSAAEVA 60
Query: 61 EKMFDDFFARVADYGTMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVYF 120
EKMFDDFFARVADYGTMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVYF
Sbjct: 61 EKMFDDFFARVADYGTMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVYF 120
Query: 121 GDEEGHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVITYAVPVYV 180
GDEEGHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVITYAVPVYV
Sbjct: 121 GDEEGHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVITYAVPVYV 180
Query: 181 NGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPE 240
NGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPE
Sbjct: 181 NGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPE 240
Query: 241 LKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTA 300
LKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTA
Sbjct: 241 LKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTA 300
Query: 301 INKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLK 360
INKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLK
Sbjct: 301 INKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLK 360
Query: 361 QIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIE 420
QIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIE
Sbjct: 361 QIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIE 420
Query: 421 DIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQE 480
DIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQE
Sbjct: 421 DIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQE 480
Query: 481 TINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSR 540
TINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSR
Sbjct: 481 TINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSR 540
Query: 541 IEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKL 600
IEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKL
Sbjct: 541 IEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKL 600
Query: 601 AEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQET 660
AEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQET
Sbjct: 601 AEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQET 660
Query: 661 SERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAA 720
SERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAA
Sbjct: 661 SERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAA 720
Query: 721 QELKDMVGRMRQIVGKFKV 739
QELKDMVGRMRQIVGKFKV
Sbjct: 721 QELKDMVGRMRQIVGKFKV 739
>pir||F71161 probable chemotaxis protein - Pyrococcus horikoshii
>gi|3256896|dbj|BAA29579.1| (AP000002) 739aa long
hypothetical chemotaxis protein [Pyrococcus horikoshii]
Length = 739
Score = 1160 bits (2967), Expect = 0.0
Identities = 574/739 (77%), Positives = 675/739 (90%)
Query: 1 MQFRKKIILMAIMSAVITMAIFGGVTIYSFNKVYGVIKGEIQAPAIEQGGQLAMSAAEVA 60
MQF+KKIIL+ I++AV++ AI GGVT+YSF+KV +++ E++ PAIE+GG +A+SAA++A
Sbjct: 1 MQFKKKIILIMILAAVVSTAILGGVTLYSFSKVDTMMREELEKPAIEEGGYMALSAADLA 60
Query: 61 EKMFDDFFARVADYGTMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVYF 120
+MF+DFFARV+DYG MA + V+EAY++GLD NE MR+FLL FKKIK+LN+DVSYVYF
Sbjct: 61 TRMFEDFFARVSDYGKMANDAVQEAYSRGLDLNEDMMRQFLLERFKKIKDLNEDVSYVYF 120
Query: 121 GDEEGHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVITYAVPVYV 180
GDE+GHMYMYPPDELPEGYDPRVRPWY AKEK G +ITEPYRDAATG+WVITY+ PVYV
Sbjct: 121 GDEQGHMYMYPPDELPEGYDPRVRPWYKLAKEKNGPVITEPYRDAATGKWVITYSEPVYV 180
Query: 181 NGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPE 240
NG+FKGVIG+DVFVSTL+ ET+ IKLGKTGY+A+++ G+ ++HP EE+INKLNIFQ PE
Sbjct: 181 NGEFKGVIGIDVFVSTLVKETQSIKLGKTGYVAVLNPQGLVIIHPKEEYINKLNIFQTPE 240
Query: 241 LKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTA 300
LKDLA+EL+KGK+ GYV+YTF+GIKK+ GY+R+K TGWIV+ATVPL +IT P L A D+
Sbjct: 241 LKDLANELRKGKERGYVVYTFEGIKKVAGYRRMKQTGWIVLATVPLEEITEPTLKAADSV 300
Query: 301 INKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLK 360
+ + ++ +GF + + IVA++V +YK+A + LAPLEKLK AAQALA G+L++V+EY+K
Sbjct: 301 VKDVSEMIYKGFGIAIIAIVAMIVAMYKVAGSILAPLEKLKMAAQALANGKLREVTEYVK 360
Query: 361 QIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIE 420
+IRYLE DEIGALIQAFEAVSKDLVGTL AI+K+LERLAEGDL+NGLTVE +GELRD+IE
Sbjct: 361 EIRYLENDEIGALIQAFEAVSKDLVGTLTAITKRLERLAEGDLTNGLTVEAKGELRDLIE 420
Query: 421 DIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQE 480
DI+SVT T R SIGSLV+MAN+LEKRANALAQ+S DVTEAINQVNEAIQQVS+EAQRQQE
Sbjct: 421 DIKSVTNTLRTSIGSLVDMANELEKRANALAQISNDVTEAINQVNEAIQQVSVEAQRQQE 480
Query: 481 TINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSR 540
TINEIT+GMRLVAQTSEESV+AMEEF GAV+EVVSIANEGSQKGD+ALKRIEDIQHMMSR
Sbjct: 481 TINEITEGMRLVAQTSEESVKAMEEFEGAVSEVVSIANEGSQKGDDALKRIEDIQHMMSR 540
Query: 541 IEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKL 600
IEETVSKV+EMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKL
Sbjct: 541 IEETVSKVSEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKL 600
Query: 601 AEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQET 660
AEESKQAADNIKSIIDKITDEIKEAVEATKEGV+VIG+SSETLRDTIGYLANIATLLQET
Sbjct: 601 AEESKQAADNIKSIIDKITDEIKEAVEATKEGVNVIGQSSETLRDTIGYLANIATLLQET 660
Query: 661 SERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAA 720
SERM+ VK+QIV+TQEEVDK+LRALENLAASAEETTASAEEVSSA+E+QTA+IEELRRAA
Sbjct: 661 SERMSEVKDQIVKTQEEVDKSLRALENLAASAEETTASAEEVSSAVEEQTASIEELRRAA 720
Query: 721 QELKDMVGRMRQIVGKFKV 739
QEL+D+V +MR I+ KFKV
Sbjct: 721 QELRDIVEKMRGIIAKFKV 739
>pir||B75158 sensory rhodopsin II transducer (htr-ii) (methyl-accepting
phototaxis protein ii) (mpp-ii) PAB2066 - Pyrococcus
abyssi (strain Orsay) >gi|5457855|emb|CAB49345.1|
(AJ248284) SENSORY RHODOPSIN II TRANSDUCER (HTR-II)
(METHYL-ACCEPTING PHOTOTAXIS PROTEIN II) (MPP-II)
[Pyrococcus abyssi]
Length = 501
Score = 415 bits (1056), Expect = e-115
Identities = 206/429 (48%), Positives = 316/429 (73%), Gaps = 2/429 (0%)
Query: 313 AVGFVIIVAIL--VVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEI 370
++G + IVA++ + ++ ++T+ P+ ++ A+++AEG+L + E + +I+Y E DEI
Sbjct: 71 SIGVMSIVAVISGALGMRLMNSTMRPINEMAKIAESIAEGKLSRAREMVSKIQYREDDEI 130
Query: 371 GALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFR 430
G LI+ F A+S+D++ TL I++++E+++EGD+S+ L V +G+ I+ +R R
Sbjct: 131 GKLIEGFRAISQDVLQTLEIITERMEKISEGDVSDDLKVHAKGDFESILNSMRKTISNLR 190
Query: 431 ESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMR 490
E + ++ ++A LE RAN L ++S +++EAINQV EAIQQVS+EAQRQQE I EI +GM
Sbjct: 191 ELMKTVRDLALTLESRANDLTRISSEISEAINQVAEAIQQVSVEAQRQQENITEIMEGMN 250
Query: 491 LVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAE 550
+ A ++ +V AMEEFSG V EV+SIA EG KG++A+ ++EDIQ M I + V +VAE
Sbjct: 251 ITADVTQRTVDAMEEFSGVVNEVLSIAREGKDKGEKAISQVEDIQDAMKVIRQAVQEVAE 310
Query: 551 MSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADN 610
MS+N+ +I N I IAEQTNLLALNAAIEAARAGE GRGFAVVAQE+R LAEESK+AA+
Sbjct: 311 MSKNVGDIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAEK 370
Query: 611 IKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQ 670
I+ I+++I +++++AVE T++GV V+ +S + L++T+GYL NI LL + ++ +K +
Sbjct: 371 IRGILNEIQEKVEKAVEETEKGVKVVDDSVDFLKETVGYLMNIGELLDDVESKLQDIKNE 430
Query: 671 IVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRM 730
+ TQE V+ A +ALENLAASA+ETTASAEEVS++ ++Q +++EE++R EL+D+V ++
Sbjct: 431 LANTQEHVENAKKALENLAASAQETTASAEEVSASAQEQASSMEEVKRNIIELRDIVKKL 490
Query: 731 RQIVGKFKV 739
R+ V KV
Sbjct: 491 REAVEFIKV 499
>pir||F71197 probable methyl-accepting chemotaxis protein - Pyrococcus
horikoshii >gi|3258290|dbj|BAA30973.1| (AP000007) 507aa
long hypothetical methyl-accepting chemotaxis protein
[Pyrococcus horikoshii]
Length = 507
Score = 413 bits (1049), Expect = e-114
Identities = 205/429 (47%), Positives = 312/429 (71%), Gaps = 2/429 (0%)
Query: 313 AVGFVIIVAIL--VVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEI 370
++G + IVA + V+ ++I ++ + P+ ++ A+ +A+G+L E + +I+Y E+DEI
Sbjct: 74 SIGVMTIVAGVSGVIGFRIMNSVMKPVSEMAKVAEEIADGKLSHAGELISRIKYREKDEI 133
Query: 371 GALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFR 430
G L++ F A+S +++ TL I+ ++E++++GD++ LT+ +G+ I+ +R R
Sbjct: 134 GKLLEGFRAISTEVLQTLEVITDRMEKISKGDVTEELTLHAKGDFESILNSMRKTIVQLR 193
Query: 431 ESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMR 490
+ ++ ++A LE RA+ LA++S ++TEA+NQV EAIQQVS EAQRQQE I +I DGM
Sbjct: 194 NLMKTVRDLAVTLETRADDLARISSEITEAVNQVAEAIQQVSTEAQRQQENITQIMDGMN 253
Query: 491 LVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAE 550
L A ++ +V AMEEFS V EV+SIA EG +KG++A+ ++ DIQ+ M I + V +VAE
Sbjct: 254 LTADVTQRTVEAMEEFSSVVNEVISIAREGKEKGEKAISQVGDIQNAMRVISQAVQEVAE 313
Query: 551 MSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADN 610
MS+N+ EI N I IAEQTNLLALNAAIEAARAGE GRGFAVVAQE+R LAEESK+AA+
Sbjct: 314 MSKNVGEIINAIADIAEQTNLLALNAAIEAARAGELGRGFAVVAQEVRNLAEESKEAAER 373
Query: 611 IKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQ 670
I+ I+++I D++++AVE T++GV ++ S + LR+T+GYL N+ LL + +++ VK +
Sbjct: 374 IREILNQIQDKVEKAVEETEKGVKIVDNSVDFLRETVGYLMNVGELLDDVEDKLQAVKSE 433
Query: 671 IVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRM 730
+ TQE V+ A +ALENLAASAEETTASAEEVS++ E+Q +++EE+RR EL+D+V ++
Sbjct: 434 LANTQEHVENAKKALENLAASAEETTASAEEVSASAEEQASSLEEVRRNIVELRDIVKKL 493
Query: 731 RQIVGKFKV 739
R+ V KV
Sbjct: 494 REAVEFIKV 502
>pir||D71155 probable methyl-accepting chemotaxis protein - Pyrococcus
horikoshii >gi|3256846|dbj|BAA29529.1| (AP000002) 428aa
long hypothetical methyl-accepting chemotaxis protein
[Pyrococcus horikoshii]
Length = 428
Score = 329 bits (834), Expect = 8e-89
Identities = 173/362 (47%), Positives = 257/362 (70%), Gaps = 1/362 (0%)
Query: 378 EAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLV 437
E K+L + IS LER+A GDLS + E+ GEL I E I + ++ + ++
Sbjct: 56 EEYKKNLEKRIEEISVILERIAHGDLSVEDS-EISGELAKIREGIEKLRQSISGLVLNVK 114
Query: 438 EMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSE 497
A D++ A + + + EA+ QV EAI QVS EAQR+QE I+++T+ MR + S+
Sbjct: 115 NAAIDVKNHAKVMKDNIEQIAEAVAQVAEAINQVSAEAQREQENISKMTETMRYINDISK 174
Query: 498 ESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEE 557
E+V MEEF ++ E+ +A EG +KG A +IE+I MM IEETV VA+M +NIE
Sbjct: 175 ETVSTMEEFEASMREMAQLAKEGGEKGRMAATQIEEISRMMQMIEETVRGVADMGKNIEN 234
Query: 558 ITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDK 617
ITNVI+SIAEQTNLLALNAAIEAARAGEAG+GFAVVA EIRKLAEESK+AA++I+ +I +
Sbjct: 235 ITNVISSIAEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRELIKQ 294
Query: 618 ITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEE 677
I D+I E+VE TK+G V+G S+E +++++ YL +A +++E + + ++E++++ E+
Sbjct: 295 IGDKISESVEVTKQGAEVVGTSTEVIKESVNYLTQVAEMMEEMEAKASELREKVIQEGEK 354
Query: 678 VDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKF 737
+++ L+ LENLAASAEETTA+AEEVS+A E+Q++A++EL+ + +EL +V + + +GKF
Sbjct: 355 IEEGLKFLENLAASAEETTAAAEEVSAAAEEQSSALQELKESVKELDRLVDVLMEHIGKF 414
Query: 738 KV 739
K+
Sbjct: 415 KL 416
>pir||H75006 methyl-accepting chemotaxis related protein PAB1308 - Pyrococcus
abyssi (strain Orsay) >gi|5459008|emb|CAB50494.1|
(AJ248288) METHYL-ACCEPTING CHEMOTAXIS RELATED PROTEIN
[Pyrococcus abyssi]
Length = 435
Score = 321 bits (813), Expect = 2e-86
Identities = 173/366 (47%), Positives = 258/366 (70%), Gaps = 9/366 (2%)
Query: 378 EAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLV 437
E K L ++ I K L+R+A+GDLS VE + E+ + +R E R+SI LV
Sbjct: 62 EEYEKQLQREIDEIVKILDRIAQGDLS----VEDK-EIGGMGAKVRQGIEDLRKSISQLV 116
Query: 438 ----EMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVA 493
A D+ + + + V +++ QV EAI QVSIEAQR+QE I+++TD MR +
Sbjct: 117 LNIKNAAIDVRNHTKVMKENIEQVADSVQQVAEAINQVSIEAQREQENISKMTDTMRYIH 176
Query: 494 QTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSR 553
S+E+V MEEF ++ E+ +A EG +KG +A +IE+I MM +IEETV VAEM +
Sbjct: 177 DISKETVSTMEEFEASMREMAQLAKEGGEKGRQAADQIEEISRMMEKIEETVRGVAEMGK 236
Query: 554 NIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKS 613
+IE ITNVI+SI+EQTNLLALNAAIEAARAGEAG+GFAVVA EIRKLAEESK+AA++I+
Sbjct: 237 SIENITNVISSISEQTNLLALNAAIEAARAGEAGKGFAVVADEIRKLAEESKKAAEDIRE 296
Query: 614 IIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVR 673
+I +I D+I E+VE T++G V+ S+E +++++ YL +A +++E + + ++E++++
Sbjct: 297 LIKQIGDKIGESVEVTQQGAEVVKTSTEVIKESVSYLTQVAEMMEEMEVKASELREKVIQ 356
Query: 674 TQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQI 733
E++++ LR LENLAASAEETTA+AEEVS+A E+Q++A++ELR + +EL +V + +
Sbjct: 357 EGEKIEEGLRFLENLAASAEETTAAAEEVSAAAEEQSSALQELRESVKELDRLVDVLMEQ 416
Query: 734 VGKFKV 739
+ KFK+
Sbjct: 417 ISKFKL 422
>sp|P39217|TLPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPB >gi|1075831|pir||D54078
methyl-accepting chemotaxis protein tlpB - Bacillus
subtilis >gi|459691|gb|AAA20557.1| (L29189)
transmembrane receptor [Bacillus subtilis]
>gi|2635607|emb|CAB15101.1| (Z99119) methyl-accepting
chemotaxis protein [Bacillus subtilis]
>gi|2635619|emb|CAB15112.1| (Z99120) methyl-accepting
chemotaxis protein [Bacillus subtilis]
Length = 662
Score = 259 bits (655), Expect = 7e-68
Identities = 201/747 (26%), Positives = 354/747 (46%), Gaps = 119/747 (15%)
Query: 9 LMAIMSAVITMAIFGGVTIYSFNKVYGVIKGEIQAPA---IEQGGQLAMSAAEVAEKMFD 65
L+A AV+ + + G + +S+ + + E+ + A +E+ + E K D
Sbjct: 17 LIAAFLAVLILPV-GVLAYFSYQSAWNALDRELISSAKGNVEELNSTLQNKLEDKVKAID 75
Query: 66 DFFARVADYGTMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVYFGDEEG 125
+++ D + L N+T ++E +FK+ LN DV +Y E+
Sbjct: 76 -YYSETVDKDIL------------LGKNKTLLKE----KFKQYTTLNDDVGAIYAASEDK 118
Query: 126 HMYMYPPDELPEGYDPRVRPWYVQA-KEKGGAIITEPYRDAATGQWVITYAVPVYVNGQF 184
+Y YP +P+G+DP R WY QA EKG A+ +EPY D ATG V+T ++ Q
Sbjct: 119 KLYKYPDSGVPKGFDPTGRDWYKQAVAEKGQAVFSEPYTDEATGDIVVT------ISKQL 172
Query: 185 K---GVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPEL 241
K GVI LD+ + +L +K+IK+GK G+ I N + HP + P
Sbjct: 173 KDGSGVIALDLNLDEVLTASKRIKIGKEGFAFITTGNKKYIAHPTIK----------PGT 222
Query: 242 KDLADELKK--GKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDT 299
D + K EG YTF+G +K + K TGW + T +S++ A+
Sbjct: 223 TGSGDWTNQVYSKKEGSFEYTFEGKEKKMAFTTNKLTGWKIAGTYFVSELQ----DASSP 278
Query: 300 AINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYL 359
+N +I+ +G ++I+ I+ I K PL KL + ++ G L +V
Sbjct: 279 VLNTAVIILCVSIVIGGILILYIIRAITK-------PLRKLVSTSAKISSGDLTEV---- 327
Query: 360 KQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDII 419
I ++E G L ++F +S L
Sbjct: 328 --IDIHSKNEFGQLGESFNEMSASL----------------------------------- 350
Query: 420 EDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQ 479
RSV + S+ ++ + +L A ++ ++ +T AI Q ++ + S + +
Sbjct: 351 ---RSVIGVIQTSVENVASSSEELTASAAQTSKATEHITLAIEQFSDGNEAQSEKLETSS 407
Query: 480 ETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMS 539
++++ +G+ VAQ S ++ + S A A G + + + +++ I +
Sbjct: 408 NHLSQMNEGISKVAQASSTITKSSIQSSEA-------AGSGEKLVEHTVGQMKTIDQSVQ 460
Query: 540 RIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRK 599
+ E V + S++I I NVI IA+QTNLLALNAAIEAARAGE GRGF+VVA+E+RK
Sbjct: 461 KAEAVVKGLETKSQDITSILNVINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEEVRK 520
Query: 600 LAEESKQAADNIKSIIDKITDEIKEAV-------EATKEGVSVIGESSETLRDTIGYLAN 652
LA +S +A I+ +I +I EI ++ KEG+ + +++E+ + +
Sbjct: 521 LAVQSADSAKEIEGLIQEIVREISTSLSMFQSVNHEVKEGLQITDQTAESFKQ----IYE 576
Query: 653 IATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAA 712
+ T + + + EQ+ +EV A+E+++A A+E++A ++++++ E+Q A+
Sbjct: 577 MTTQISGELQNLNATVEQLSAGSQEVSS---AVEDISAVAKESSAGIQDIAASAEEQLAS 633
Query: 713 IEELRRAAQELKDMVGRMRQIVGKFKV 739
+EE+ +A+ L +M ++ I KFK+
Sbjct: 634 MEEISSSAETLANMAEELQDITKKFKI 660
>sp|P39215|MCPB_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB (H3)
>gi|459688|gb|AAA20554.1| (L29189) transmembrane
receptor [Bacillus subtilis] >gi|2635610|emb|CAB15104.1|
(Z99119) methyl-accepting chemotaxis protein [Bacillus
subtilis] >gi|2635622|emb|CAB15115.1| (Z99120)
methyl-accepting chemotaxis protein [Bacillus subtilis]
Length = 662
Score = 252 bits (638), Expect = 7e-66
Identities = 177/665 (26%), Positives = 315/665 (46%), Gaps = 79/665 (11%)
Query: 76 TMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVYFGDEEGHMYMYPPDEL 135
T +E +K + KG + E + ++F + +N+ V+ +Y G + G P ++L
Sbjct: 75 TFFSESLKRSAFKGKSNQEE-----IKAKFSQYVSINQGVARIYGGADNGTYVQAPKEKL 129
Query: 136 PEGYDPRVRPWYVQAKEKGGAI-ITEPYRDAATGQWVITYAVPVYVNGQFKGVIGLDVFV 194
PEGYDPR RPWY A + GG I +T+PY A+ G VIT A + GV+ +D+ +
Sbjct: 130 PEGYDPRQRPWYQDAMKAGGEIVVTDPYVAASDGSMVITIAQEL---KDGSGVVAMDITI 186
Query: 195 STLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPELKDLADELKKGKDE 254
LL + K+IK+GK GY I +N + H N + KL+ V ++ D
Sbjct: 187 DKLLEQMKQIKVGKEGYAFIATKNKTYVAHKNHKAGEKLSGDWVAKM--------YANDS 238
Query: 255 GYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAV 314
G + YT K Y + TGW + T+ + +I + K ++ G V
Sbjct: 239 GELQYTLNNEDKKMTYTTNELTGWKIAGTMYMDEIK-----------DASKSVLTTGMIV 287
Query: 315 GFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALI 374
IVA ++I I + PL++L +++ ++ G L + I +DE+G L
Sbjct: 288 LIASIVAGGILILFIVRSITKPLKRLVQSSKTISRGDLTET------IEIHSKDELGELG 341
Query: 375 QAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIG 434
++F + + L RS+ + S+
Sbjct: 342 ESFNEMGQSL--------------------------------------RSLISAIQNSVN 363
Query: 435 SLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQ 494
++ + L A ++ ++ +T AI Q + ++ S + + +N + +G++ V+Q
Sbjct: 364 NVAASSEQLTASAGQTSKATEHITMAIEQFSNGNEEQSRKVESSSHQLNLMNEGLQQVSQ 423
Query: 495 TSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRN 554
TS + +A + IA G + + ++ I + + E V + S++
Sbjct: 424 TSSDITKAS-------IQSTEIAGTGEKFVQQTGGQMNSINQSVQQAEAVVKGLEGKSKD 476
Query: 555 IEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSI 614
I I VI IA+QTNLLALNAAIEAARAGE+GRGF+VVA+E+RKLA +S +A I+ +
Sbjct: 477 ITSILRVINGIADQTNLLALNAAIEAARAGESGRGFSVVAEEVRKLAVQSADSAKEIEKL 536
Query: 615 IDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRT 674
I +I EI ++ KE + +T +I ++ E + ++ T+ + +
Sbjct: 537 IQEIVAEIDTSLHMFKEVNQEVQSGLVVTDNTKESFQSIFSMTNEIAGKLQTMNSTVEQL 596
Query: 675 QEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIV 734
+ A+ +A ++E++AS ++++++ E+Q A++EE+ +A L M +R +
Sbjct: 597 SDRSQHVSAAVSGIADVSKESSASIQDIAASAEEQLASMEEISSSATTLAQMAEELRDLT 656
Query: 735 GKFKV 739
+FK+
Sbjct: 657 KQFKI 661
>pir||A54078 methyl-accepting chemotaxis protein mcpB - Bacillus subtilis
Length = 662
Score = 252 bits (636), Expect = 1e-65
Identities = 176/665 (26%), Positives = 317/665 (47%), Gaps = 79/665 (11%)
Query: 76 TMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVYFGDEEGHMYMYPPDEL 135
T +E +K + KG + E + ++F + +N+ V+ +Y G + G P ++L
Sbjct: 75 TFFSESLKRSAFKGKSNQEE-----IKAKFSQYVSINQGVARIYGGADNGTYVQAPKEKL 129
Query: 136 PEGYDPRVRPWYVQAKEKGGAII-TEPYRDAATGQWVITYAVPVYVNGQFKGVIGLDVFV 194
PEGYDPR RPWY A + GG I+ T+PY A+ G VIT A + GV+ +D+ +
Sbjct: 130 PEGYDPRQRPWYQDAMKAGGEIVVTDPYVAASDGSMVITIAQELKDGS---GVVAMDITI 186
Query: 195 STLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPELKDLADELKKGKDE 254
LL + K+IK+GK GY I +N + H N + KL+ V ++ D
Sbjct: 187 DKLLEQMKQIKVGKEGYAFIATKNKTYVAHKNHKAGEKLSGDWVAKMY--------ANDS 238
Query: 255 GYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAV 314
G + YT K Y + TGW + T+ + +I S T + +++I
Sbjct: 239 GELQYTLNNEDKKMTYTTNELTGWKIAGTMYMDEIKDASKSVLTTGM----IVLIASIVA 294
Query: 315 GFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALI 374
G ++I+ I+ I K PL++L +++ ++ G L +
Sbjct: 295 GGILILFIVRSITK-------PLKRLVQSSKTISRGDLTET------------------- 328
Query: 375 QAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIG 434
E SKD +G L ++ + +RS+ ++S+
Sbjct: 329 --IEIHSKDELGELGE-----------------------SFNEMGQSLRSLISAIQDSVN 363
Query: 435 SLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQ 494
++ + L A ++ ++ +T AI Q + ++ S + + +N + +G++ V+Q
Sbjct: 364 NVAASSEQLTASAGQTSKATEHITMAIEQFSNGNEEQSRKVESSSHQLNLMNEGLQQVSQ 423
Query: 495 TSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRN 554
TS + +A + IA G + + + ++ I + + E V + S++
Sbjct: 424 TSSDITKAS-------IQSTEIAGTGEKFVQQTVGQMNSINQSVQQAEAVVKGLEGKSKD 476
Query: 555 IEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSI 614
I I VI IA+QTNLLALNAAIEAARAGE+GRGF+VVA+E+RKLA +S +A I+ +
Sbjct: 477 ITSILRVINGIADQTNLLALNAAIEAARAGESGRGFSVVAEEVRKLAVQSADSAKEIEKL 536
Query: 615 IDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRT 674
I +I EI ++ KE + +T +I ++ E + ++ T+ + +
Sbjct: 537 IQEIVAEIDTSLHMFKEVNQEVQSGLVVTDNTKESFQSIFSMTNEIAGKLQTMNSTVEQL 596
Query: 675 QEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIV 734
+ A+ +A ++E++AS ++++++ E+Q A++EE+ +A L M +R +
Sbjct: 597 SDRSQHVSAAVSGIADVSKESSASIQDIAASAEEQLASMEEISSSATTLAQMAEELRDLT 656
Query: 735 GKFKV 739
+FK+
Sbjct: 657 KQFKI 661
>sp|P39214|MCPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPA (H1)
>gi|1075866|pir||B54078 methyl-accepting chemotaxis
transducer mcpA - Bacillus subtilis
>gi|459690|gb|AAA20556.1| (L29189) transmembrane
receptor [Bacillus subtilis] >gi|2635608|emb|CAB15102.1|
(Z99119) methyl-accepting chemotaxis protein [Bacillus
subtilis] >gi|2635620|emb|CAB15113.1| (Z99120)
methyl-accepting chemotaxis protein [Bacillus subtilis]
Length = 661
Score = 242 bits (611), Expect = 1e-62
Identities = 196/740 (26%), Positives = 352/740 (47%), Gaps = 104/740 (14%)
Query: 8 ILMAIMSAVITMAIFGGVTIYSFNKVYGVIKGEIQAPAIEQGGQL-AMSAAEVAEKMFDD 66
+L++ +S +I + + I+++ + ++ A+E QL + + EK
Sbjct: 17 LLVSFLSILIIPVVI--LAIFAYQSASSSLDRQMMGSALENVQQLNEIINTSIGEK---- 70
Query: 67 FFARVADYGTMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVYFGDEEGH 126
ADY + + KE Y + ++RE +F + +NKDV +Y D +GH
Sbjct: 71 --ENSADY--FSEWLTKEKYNA---KSNASIRE----KFSQYISINKDVESIYTSDTKGH 119
Query: 127 MYMYPPDELPEGYDPRVRPWYVQA-KEKGGAIITEPYRDAATGQWVITYAVPVYVNGQFK 185
YP +P GY+P R WY +A KG +IT+PY+ A+T V+T A
Sbjct: 120 FTRYPDLPMPSGYNPVERDWYKKAVANKGKVVITDPYKTASTNTMVVTIAQQTKDGS--- 176
Query: 186 GVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPELKDLA 245
GVI +++ + LL TKK+ +G GY I+ ++ + HPNE+ +L D
Sbjct: 177 GVIAINMTIENLLKTTKKVNIGTQGYAFIMTKDKKVVAHPNEQSGTELK-------GDWL 229
Query: 246 DELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDI---TGPILSATDTAIN 302
D++ D+G YT G KK + K TGW + T+ L +I P+L
Sbjct: 230 DKMLSA-DKGDFQYTMDGDKKKMAFDTNKLTGWKIGGTMYLDEIHEAAQPVLH------- 281
Query: 303 KMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQI 362
+ +IV+ II+ I+V+ I S T PL++L G K++SE
Sbjct: 282 -LALIVLAA-----AIIIGIIVMTLIIRSIT-TPLKQLV--------GSSKRISE----- 321
Query: 363 RYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDI 422
G L + + SKD +G L ++ +
Sbjct: 322 --------GDLTETIDIRSKDELGELGK-----------------------SFNNMASSL 350
Query: 423 RSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETI 482
RS+ ++S+ ++ + +L A ++ ++ +T AI Q + ++ + + E I
Sbjct: 351 RSLIHAIQDSVDNVAASSEELTASAAQTSKATEHITLAIEQFSNGNEKQNENIETAAEHI 410
Query: 483 NEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIE 542
++ DG+ +AQ SE + + + IA+EG + + + ++ I + E
Sbjct: 411 YQMNDGLTNMAQASEV-------ITDSSVQSTEIASEGGKLVHQTVGQMNVIDKSVKEAE 463
Query: 543 ETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAE 602
+ V + S++I I VI IA+QTNLLALNAAIEAARAGE GRGF+VVA+E+RKLA
Sbjct: 464 QVVRGLETKSKDITNILRVINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEEVRKLAV 523
Query: 603 ESKQAADNIKSIIDKITDEIKEAV---EATKEGVSVIGESSETLRDTIGYLANIATLLQE 659
+S +A I+ +I +I EI ++ ++ + V + ++ + ++ + +
Sbjct: 524 QSADSAKEIEGLIIEIVKEINTSLGMFQSVNQEVQTGLDITDKTEMSFKRISEMTNQIAG 583
Query: 660 TSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRA 719
+ M+ +Q+ + EEV A E++A+ ++E++A ++++++ E+Q A++EE+ +
Sbjct: 584 ELQNMSATVQQLSASSEEVS---GASEHIASISKESSAHIQDIAASAEEQLASMEEISSS 640
Query: 720 AQELKDMVGRMRQIVGKFKV 739
A+ L M +R + +FK+
Sbjct: 641 AETLSSMAEELRDMTKRFKI 660
>sp|P39216|TLPA_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPA >gi|1075830|pir||C54078
methyl-accepting chemotaxis protein tlpA - Bacillus
subtilis >gi|459689|gb|AAA20555.1| (L29189)
transmembrane receptor [Bacillus subtilis]
>gi|2635609|emb|CAB15103.1| (Z99119) methyl-accepting
chemotaxis protein [Bacillus subtilis]
>gi|2635621|emb|CAB15114.1| (Z99120) methyl-accepting
chemotaxis protein [Bacillus subtilis]
Length = 662
Score = 236 bits (595), Expect = 8e-61
Identities = 177/648 (27%), Positives = 317/648 (48%), Gaps = 90/648 (13%)
Query: 101 LLSEFKKIKELNKDVSYVYFGDEEGHMYMYPPDELPEGYDPRVRPWYVQA-KEKGGAIIT 159
L EFK+ ++N +V+ V+ ++G YP ++P ++ R WY +A KG I+T
Sbjct: 94 LKQEFKQFIQMNDNVAAVFSSGKDGDFTRYPYADMPSDFNALERDWYKEAMANKGKTIVT 153
Query: 160 EPYRDAATGQWVITYAVPVYVNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNG 219
EPY ++G+ V+T A V+G GV+ +D+ + L+ K I +GK GY I+ QN
Sbjct: 154 EPYESISSGKMVVTIARQT-VDG--SGVVAIDMKIDDLVTTAKGINIGKEGYAFILSQNK 210
Query: 220 MTLVHPNEEFINKLNIFQVPELKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWI 279
+ + E+ +L D D+L K K G YT++G KK + +TTGW
Sbjct: 211 KVIAYSGEKAGTELK-------GDWVDKLYKDK-SGDFEYTYKGKKKKMAFATSQTTGWK 262
Query: 280 VVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEK 339
+ T+ ++I + ++I V + I A + IY + + PL +
Sbjct: 263 ISGTMYANEIH-----------DAASRVLIMASIVLAIAIGAGMTAIYFVIRSITKPLRR 311
Query: 340 LKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLA 399
+ +A+ ++EG L + I +DE+G L ++F N ++ L L
Sbjct: 312 IVASAEKISEGDLTET------IEINSKDELGVLSESF-----------NHMAHSLRSLI 354
Query: 400 EGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTE 459
G ++D +E + S +E +L A+ ++ ++ +T
Sbjct: 355 HG-------------IKDSVEHVASSSE--------------ELTASADQTSRATEHITM 387
Query: 460 AINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANE 519
AI Q + + S + + E INE+ DG+ +A+ + +TE + + E
Sbjct: 388 AIEQFSNGSESQSEKIETTTEQINEMNDGLAELARA-----------AAVITETSADSTE 436
Query: 520 GSQKGDEALKR----IEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALN 575
S KG+ +++ + I H + E+ V + S++I I VI IA+QTNLLALN
Sbjct: 437 VSSKGETLVQKTAGQMNTIDHSVKAAEQVVKGLEIKSKDITNILRVINGIADQTNLLALN 496
Query: 576 AAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAV----EATKE 631
AAIEAARAGE GRGF+VVA+E+RKLA +S +A I+S+I +I EI ++ KE
Sbjct: 497 AAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIESLISEIVKEIHTSLNVLQSVNKE 556
Query: 632 GVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAAS 691
+ + + ET + + +++ + + + M E++ +E+ A ++ A
Sbjct: 557 VETGLVMTDET-KQSFKHISQMTNQIASELQNMNATVEELSAGAQEIS---AASNDITAI 612
Query: 692 AEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
++E++ ++++++ E+Q A++EE+ +A L+ M +R + +FKV
Sbjct: 613 SKESSDGIQDIAASAEEQLASMEEISSSALTLERMSEELRDLTKQFKV 660
>dbj|BAB05546.1| (AP001513) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 678
Score = 229 bits (578), Expect = 8e-59
Identities = 195/737 (26%), Positives = 344/737 (46%), Gaps = 90/737 (12%)
Query: 16 VITMAIFGGVTIYSFNKVYGVIKGEIQAPAIEQGGQLAMSAAEVAEKMFD---DFFARVA 72
V T + G + +Y E Q + G++ + EK+ D FF+
Sbjct: 11 VTTSGLIGLIVFAILGTMYVQASKETQTSTESEAGRVTIEM----EKLLDYYLPFFSSAV 66
Query: 73 DYGTMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVYFGDEE-GHMYMYP 131
D +A + + + +E+ E + EF E ++ Y G + G+ Y YP
Sbjct: 67 D--RLAQDRAVMTFLRSNPDDESFPDE-INEEFVYFLENDERADLFYIGQQSNGNFYSYP 123
Query: 132 PDELPEGYDPRVRPWYVQAKEKGGAII-TEPYRDAATGQWVITYAVPVYV----NGQFKG 186
ELP+ YDPR RPWY +A E ++ +EPY A G V+ V + N Q G
Sbjct: 124 EVELPDDYDPRARPWYEKAAETPEQVVWSEPYLSATVGHEVMMVTVAKAIVDPRNQQLLG 183
Query: 187 VIGLDVF---VSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPELKD 243
V+ +D+ +S LLNET ++G G +A+I ++GM + HP+ + + N+ ++D
Sbjct: 184 VVAIDILLDDLSQLLNET---EVGMGGSLALIHESGMVIAHPDADLRGE-NLSDESFIQD 239
Query: 244 LADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINK 303
L + +GK +G + Y F+ + + ++ W +VA ++T P + +
Sbjct: 240 L--QQAQGK-QGQIEYEFENEARTLFFNKMDQMDWNIVAFYRDKEVTAP--------VRQ 288
Query: 304 MKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIR 363
++ I V I A Y P+ L Q + +G L ++ Q
Sbjct: 289 LRNYFILVLLVSMTIATA---TSYYFGRKMANPILALNDRMQQVIKGDLTASADVKSQ-- 343
Query: 364 YLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIR 423
DEIG L F + + L ++A+ + G SN VE+R L
Sbjct: 344 ----DEIGQLSDGFNQMVQTLREMIHALRQ------TGATSNKEAVELRSML-------- 385
Query: 424 SVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETIN 483
+E+I S E+A + A+A + D E I I+++S + +T +
Sbjct: 386 ------QEAIASSEEVATS----STAVANGAVDQAEEIEHAKSDIEKLSAQIDWMDQTAS 435
Query: 484 EITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDI-QHMMSRIE 542
+I + L A T+ S +E+ V E +++ + ++++E I H + + E
Sbjct: 436 QINE---LAASTANVSASGLEQ--------VETLREKTEEHERIIQKMEGIVNHFVHQTE 484
Query: 543 ETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAE 602
E +S I +I S +EQTNLLALNA+IEAARAGE G+GF+VVA+EIRKLAE
Sbjct: 485 EILS-----------IVELIQSFSEQTNLLALNASIEAARAGEYGKGFSVVAEEIRKLAE 533
Query: 603 ESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSE 662
+S +A +NI+S + KI + A E + + E + + +I +I++ +++
Sbjct: 534 QSTKATNNIQSAVQKIKESGAHATEEMTKTAAQSAEQVKRVDQSIASFTHISSNIEQVVN 593
Query: 663 RMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQE 722
+ TV +Q+ E ++A+ A+ N+A ++++T A+AE++S++IE+ + + +++
Sbjct: 594 SIKTVVKQLQTMNESRNQAVLAINNIAGTSQDTAAAAEQISASIEELVNVLNTIGTSSER 653
Query: 723 LKDMVGRMRQIVGKFKV 739
L + + + FKV
Sbjct: 654 LNTLSDDLNKQAKAFKV 670
>pir||B83107 chemotactic transducer PctA PA4309 [imported] - Pseudomonas
aeruginosa (strain PAO1) >gi|1255679|dbj|BAA09307.1|
(D50642) transducer [Pseudomonas aeruginosa]
>gi|9950532|gb|AAG07697.1|AE004847_4 (AE004847)
chemotactic transducer PctA [Pseudomonas aeruginosa]
Length = 629
Score = 216 bits (544), Expect = 8e-55
Identities = 182/633 (28%), Positives = 275/633 (42%), Gaps = 100/633 (15%)
Query: 111 LNKDVSYVYFGDEEGHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQW 170
L S+ Y G ++G M P +P GYDPR RPWY A GG +TEPY DAAT +
Sbjct: 93 LTSTFSFTYLGQQDGVFTMRPDSPMPAGYDPRSRPWYKDAVAAGGLTLTEPYVDAATQEL 152
Query: 171 VITYAVPVYVNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFI 230
+IT A PV G GV+G D+ + TL+ + GY ++ +G LVHP++E +
Sbjct: 153 IITAATPVKAAGNTLGVVGGDLSLKTLVQIINSLDFSGMGYAFLVSGDGKILVHPDKEQV 212
Query: 231 NKLNIFQVPELKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDIT 290
K P+ ++ G E L+ I K L + W + ++
Sbjct: 213 MKTLSEVYPQ---NTPKIATGFSEA-ELHGHTRILAFTPIKGLPSVTWYLALSID----- 263
Query: 291 GPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEG 350
D A + + A + IVAILV++ + + PL + A Q +A+G
Sbjct: 264 ------KDKAYAMLSKFRVSAIAAALISIVAILVLLGLLIRLLMQPLHLMGRAMQDIAQG 317
Query: 351 RLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVE 410
+ K++ RDE G L AF N +++ R E
Sbjct: 318 E----GDLTKRLAVTSRDEFGVLGDAF-----------NQFVERIHRSIR---------E 353
Query: 411 VRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQ 470
V G + + + V S+ + E +N R N++A AIN++ A Q+
Sbjct: 354 VAGTAHKLHDVSQLVVNASNSSMANSDEQSN----RTNSVA-------AAINELGAAAQE 402
Query: 471 VSIEA----QRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDE 526
++ A + ++ DG ++V QT +RAM E S
Sbjct: 403 IARNAADASHHASDANHQAEDGKQVVEQT----IRAMNELS------------------- 439
Query: 527 ALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEA 586
E I + IE S+ NI +I VI I+EQTNLLALNAAIEAARAGEA
Sbjct: 440 -----EKISASCANIEALNSRTV----NIGQILEVIKGISEQTNLLALNAAIEAARAGEA 490
Query: 587 GRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDT 646
GRGFAVVA E+R LA ++++A I+ +I+++ +EAV E ES E
Sbjct: 491 GRGFAVVADEVRNLAHRAQESAQQIQKMIEELQVGAREAVATMTESQRYSLESVE----- 545
Query: 647 IGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAI 706
+AN A E +++V +I A E A + E+++
Sbjct: 546 ---IANRA------GESLSSVTRRIGEIDGMNQSVATATEEQTAVVDSLNMDITEINTLN 596
Query: 707 EQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
++ ++ RA EL+ GR+RQ+V FK+
Sbjct: 597 QEGVENLQATLRACGELETQAGRLRQLVDSFKI 629
>dbj|BAA23412.1| (D86947) chemotactic transducer [Pseudomonas aeruginosa]
Length = 629
Score = 215 bits (541), Expect = 2e-54
Identities = 182/633 (28%), Positives = 275/633 (42%), Gaps = 100/633 (15%)
Query: 111 LNKDVSYVYFGDEEGHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQW 170
L S+ Y G ++G M P +P GYDPR RPWY A GG +TEPY DAAT +
Sbjct: 93 LTSTFSFTYLGQQDGVFTMRPDSPMPAGYDPRSRPWYKDAVAAGGLTLTEPYVDAATQEL 152
Query: 171 VITYAVPVYVNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFI 230
+IT A PV G GV+G D+ + TL+ + GY ++ +G LVHP++E +
Sbjct: 153 IITAATPVKAAGNTLGVVGGDLSLKTLVQIINSLDFSGMGYAFLVSGDGKILVHPDKEQV 212
Query: 231 NKLNIFQVPELKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDIT 290
K P+ ++ G E L+ I K L + W + ++
Sbjct: 213 MKTLSEVYPQ---NTPKIATGFSEA-ELHGHTRILAFTPIKGLPSVTWYLALSID----- 263
Query: 291 GPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEG 350
D A + + A + IVAILV++ + + PL + A Q +A+G
Sbjct: 264 ------KDKAYAMLSKFRVSAIAAALISIVAILVLLGLLIRLLMQPLHLMGRAMQDIAQG 317
Query: 351 RLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVE 410
+ K++ RDE G L AF N +++ R E
Sbjct: 318 E----GDLTKRLAVTSRDEFGVLGDAF-----------NQFVERIHRSIR---------E 353
Query: 411 VRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQ 470
V G + + + V S+ + E +N R N++A AIN++ A Q+
Sbjct: 354 VAGTAHKLHDVSQLVVNASNSSMANSDEQSN----RTNSVA-------AAINELGAAAQE 402
Query: 471 VSIEA----QRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDE 526
++ A + ++ DG ++V QT +RAM E S
Sbjct: 403 IARNAADASHHASDANHQAEDGKQVVEQT----IRAMNELS------------------- 439
Query: 527 ALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEA 586
E I + IE S+ NI +I VI I+EQTNLLALNAAIEAARAGEA
Sbjct: 440 -----EKISASCANIEALNSRTV----NIGQILEVIKGISEQTNLLALNAAIEAARAGEA 490
Query: 587 GRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDT 646
GRGFAVVA E+R LA ++++A I+ +I+++ +EAV E ES E
Sbjct: 491 GRGFAVVADEVRNLAHRAQESAQQIQKMIEELQVGAREAVATMTESQRYSLESVE----- 545
Query: 647 IGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAI 706
+AN A E +++V +I A E A + E+++
Sbjct: 546 ---IANRA------GESLSSVTRRIGEIDGMNQVLATATEEQTAVVDSLNMDITEINTLN 596
Query: 707 EQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
++ ++ RA EL+ GR+RQ+V FK+
Sbjct: 597 QEGVENLQATLRACGELETQAGRLRQLVDSFKI 629
>dbj|BAB05994.1| (AP001515) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 671
Score = 211 bits (531), Expect = 3e-53
Identities = 157/660 (23%), Positives = 315/660 (46%), Gaps = 90/660 (13%)
Query: 90 LDSNETAMREFLLSEFKKIKELNKDVSYVYFGDEEGHMYMYPPDELPEGYDPRVRPWYVQ 149
+D+ + + +L + +L+ ++ Y E + P +LP+ +DP RPWY
Sbjct: 84 IDAGSSDVSGEVLGQLAGYGQLHPNIQLSYVATEGRTIETVPTVDLPDDFDPTTRPWYEL 143
Query: 150 AKEKGGAII-TEPYRDAATGQWVITYAVPVY-VNGQFKGVIGLDVFVSTLLNETKKIKLG 207
A ++ T PY G+ V+T A + GQ +GV G+D+ ++ + I++
Sbjct: 144 AMASPTEVVWTSPYVSIEDGEIVMTVAKAILDERGQAQGVAGIDMTLNDFSDILGSIEMN 203
Query: 208 KTGYIAIIDQNGMTLVHPN--EEFINKLNIFQVPELKDLADELKKGKDEGYVLYTFQGIK 265
G I + D+ G +VHP E + + ++ ++ + + G+ +G F
Sbjct: 204 YDGAIFLFDREGTAIVHPTLLGETVTEDELY--GQVIQATSDSENGRTDGESTILF---- 257
Query: 266 KIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVV 325
++ + TGWIV + +L +T N + ++ + VG +I++
Sbjct: 258 ----FQTVPLTGWIVGMEFERDN----MLKDVNTVRNGIILVSVIALIVGMMIVIL---- 305
Query: 326 IYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLV 385
+A + P+ +L +A G L +R DE+G L ++F+
Sbjct: 306 ---VARSITKPISRLGTHVGTVASGDL------TVDVRAAGNDEVGQLTESFK------- 349
Query: 386 GTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEK 445
E+ +LR II ++ T +E+
Sbjct: 350 ------------------------EMLVQLRGIITTVKGSTAHVQEA------------- 372
Query: 446 RANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEE 505
A+ L +S++ + ++ A++ V+I + +Q E ++E + ++ R ME+
Sbjct: 373 -ADHLTAISEETIASSEEIALAVRDVAIGSTKQVEHLDE-------AKRQIDQLARQMEQ 424
Query: 506 FSGAVTEVVSIANE---GSQKGDEALKRIE----DIQHMMSRIEETVSKVAEMSRNIEEI 558
S ++TEV S++NE Q G E ++ ++ + + ++E+ + K+++ I E+
Sbjct: 425 MSLSMTEVGSLSNETRLAGQSGSEKVQHLKTKTLEANTVFDQMEDGLLKLSDHIMEINEV 484
Query: 559 TNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKI 618
+ I ++EQTNLLALNA+IEAARAGE G+GFAVVA E+R+LAE+S + I I
Sbjct: 485 IHTINHLSEQTNLLALNASIEAARAGEHGKGFAVVANEVRRLAEQSSHETVRVGDTITGI 544
Query: 619 TDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEV 678
+ K+ + K+ S++ E S+++ +T ++A+L+++ +E + +V+E E+
Sbjct: 545 VNRSKQVIVDMKQARSILSEQSDSVDETENTFLHMASLIKQMNETLASVQEDFGTLAEQN 604
Query: 679 DKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFK 738
+ ++ +E + AE+ A++EEV+++ ++Q A++ + AA++L++ + Q V +F+
Sbjct: 605 SQFVKRIEAVVEVAEQAAATSEEVNASTDEQVTALQRITEAAEQLQEASHELNQSVRQFQ 664
>dbj|BAB07622.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 695
Score = 206 bits (520), Expect = 5e-52
Identities = 184/767 (23%), Positives = 339/767 (43%), Gaps = 100/767 (13%)
Query: 1 MQFRKKIILMAIMSAVITMAIFGGVTIYSFNKVYGVIKGEIQAPAIEQGGQLAMSAAEVA 60
M R K++++ + S I IFG V+ YS K + + +LA+
Sbjct: 1 MTLRTKMLVLILGSVFI---IFGAVSAYSMYKTNQISVHMTSELMESENDRLALEVQLEV 57
Query: 61 EKMFDDFFARVADYG--------TMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELN 112
E D AR +G T + + V L N T + + + E +
Sbjct: 58 ELALDS--ARALAHGLQGLKENDTASRDEVNAMLTAVLRENPTFIGTWTIWEPDAFDGKD 115
Query: 113 KDVSYVYFGDEEGHM--YMYPPD------ELPEGYD-PRVRPWYVQAKEKGGAIITEPYR 163
++ + D G Y Y D E YD P +Y+ KE G ++ EPY
Sbjct: 116 EEFAGTDLHDATGRYIPYFYRGDNGQVLSEPSRDYDVPGDGDYYLVPKEAGKEVVLEPYL 175
Query: 164 DAATGQWV--ITYAVPVYVNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMT 221
G+ + ++ AVPV +G+ GV+G+D+ + + + TGY +I G
Sbjct: 176 YEMNGELIMFLSVAVPVIDSGETVGVVGIDLSLDYIQDFINDYTFFDTGYGLLISNEGQV 235
Query: 222 LVHPNEEFINK--LNIFQVPELKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKT-TGW 278
+ HP E + + ++ + + LK+G+D + + + I + + +T T W
Sbjct: 236 VSHPQAENVGGDISTLLPASMVQRVMERLKQGEDASFTVDSL--IYDMSPVRLGQTDTPW 293
Query: 279 IVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLE 338
V+ VP ++ + ++I + G ++I I+V+I A+N + P++
Sbjct: 294 SVMVIVPQKEVMAES--------RHLLFLLIGAVSAGLILITIIIVLI---ANNIIKPIK 342
Query: 339 KLKYAAQALAEGRLKQVSEYLKQI--RYLERDEIGALIQAFEAVSKDLVGTLNAISKKLE 396
LA+G ++ K I YL+R +
Sbjct: 343 ATIDVGNHLAQG------DFTKDIPEAYLQRPD--------------------------- 369
Query: 397 RLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKD 456
E+ DI S+ ++ I ++++ A + LA +++
Sbjct: 370 -----------------EVGDIARSFNSMKQSLSAMIHNVLKHAEQAAAASQELATSAEE 412
Query: 457 VTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSI 516
+ NQ+ I +++ A Q E I + M+ +++ +A S E+ +
Sbjct: 413 TKQTSNQIAVTINEIAEGATGQSEHAASILERMKTTVLEAQKGQQA----SIHALELANQ 468
Query: 517 ANEGSQKGDEALKR-IEDIQHMMSRIEETVSKVAEMSRNIEEITNVIT---SIAEQTNLL 572
+N+ + KG++ + +E +Q + +++ +V V + EEI +++T SIA+QTNLL
Sbjct: 469 SNQSALKGEQVTRTTVEHLQEVNAQVRTSVESVKSLGERSEEIGSIVTDISSIADQTNLL 528
Query: 573 ALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEG 632
ALNAAIEAARAGE G+GFAVVA+E+RKLA +S ++AD I ++ I E KE V+ ++
Sbjct: 529 ALNAAIEAARAGEHGKGFAVVAEEVRKLAAQSAESADKITQLVGGIQGETKEIVQLIEQN 588
Query: 633 VSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASA 692
+ + E +++ L I + T E+ + + + + L ++E +++
Sbjct: 589 LVSVQRQMEYIQEVGRSLREIVHHTEGTKEQSQDMNSVLTQVLNHAETVLSSIEEISSII 648
Query: 693 EETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
E++ ASAEEV++ E+Q+A +EE+ ++ L M + + V KFK+
Sbjct: 649 EQSAASAEEVAAGAEEQSATVEEITNSSTNLAHMAEELNEEVSKFKL 695
>gb|AAG34154.1|AF312876_1 (AF312876) methyl-accepting chemotaxis protein McpU [Sinorhizobium
meliloti]
Length = 707
Score = 205 bits (517), Expect = 1e-51
Identities = 186/735 (25%), Positives = 330/735 (44%), Gaps = 86/735 (11%)
Query: 12 IMSAVITMAIFGGVTIYSFNKVYGVIKGEIQAPAIEQGGQLAMSAAEVAEKMFDDFFARV 71
+ ++ + + F G ++Y + ++ G Q A S A A
Sbjct: 22 VAASCVVVGAFAGFSVYIDSLQRATTTKAVEEDIASSGNQAAQSVANWLNGRVT-LTAMA 80
Query: 72 ADYGTMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVYFGDEEGHMYMYP 131
AD A +V EA + N+ EF+ + Y G+E G ++P
Sbjct: 81 AD---AAGQVADEAAIGSVLKNDVLTGEFIST---------------YVGNESGQFMIWP 122
Query: 132 PDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVITYAVPVYVNGQFKGVIGLD 191
++P+GYDPR RPWY QA + ++TEPY DA++G +I+ AVPV G+ GV G D
Sbjct: 123 DSKMPDGYDPRQRPWYQQAVKADARVLTEPYVDASSGDLIISAAVPVKHEGKLYGVTGSD 182
Query: 192 VFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINK--LNIFQVPELKDLADELK 249
+ L++ I +G G+ + +++G LVHPN + + K + F V +
Sbjct: 183 FSLKALVSMVNGIDVGGEGFAFLANKDGQILVHPNAKLVTKTLADAFPVDPPAIGTGIMH 242
Query: 250 KGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVI 309
D +L +F +K + + G+ + A V S I+ ++AT I
Sbjct: 243 TELDGKPMLVSFVPVKGLPSVEWY--VGFALDADVAYSAISQFRVAATIATI-------- 292
Query: 310 QGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDE 369
AVG ++A L + ++ + P+ + A + LA G L ++ RD+
Sbjct: 293 --LAVG--AMIAFLATL--LSRLVIRPVTDMTGAMEKLAAGSLDVTIPGEER-----RDQ 341
Query: 370 IGALIQAFEAVSKDLVGTLNAIS-KKLERLAEGD--LSNGLTVEVRGELRDIIEDIRSVT 426
IG++ A V NA+ K+LE A+ + LS +E + +++
Sbjct: 342 IGSMAAAV------AVFRANAVERKRLEDEADSNRSLSERERLEREAQKTRDAAEVQHAV 395
Query: 427 ETFRESIGSLVEMANDLEKR-----ANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQET 481
+ +G L + DL R A+ L ++ +D ++ +++ + V A+
Sbjct: 396 DALATGLGRLAD--GDLAYRIGSPFADRLDRLREDFNNSVAKLHNTLCAVGANARAIDAG 453
Query: 482 INEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRI-------EDI 534
EI +A+ +E+ ++EE + A+ E+ + + + + +E + E
Sbjct: 454 ATEIRSAADDLARRTEQQAASVEETAAALEEITTTVRDSAHRAEEVGALVARTRAGAEKS 513
Query: 535 QHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVA 594
++ E + + + S I I VI IA QTNLLALNA +EAARAGEAG+GFAVVA
Sbjct: 514 GEVVQNAVEAMHAIEKSSGEISNIIGVIDDIAFQTNLLALNAGVEAARAGEAGKGFAVVA 573
Query: 595 QEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIA 654
QE+R+LA+ S AA IK++I +++ GV+++G++ L+ + +
Sbjct: 574 QEVRELAQRSANAAKEIKALITTSGEQV-------HSGVTLVGDTGRALQ---AIVVEVQ 623
Query: 655 TLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIE 714
+ + S +T +EQ Q E++ A+ ++ ++ ++ +EQQTAA
Sbjct: 624 EINKHVSAIVTATREQSTGLQ-EINTAVNTMDQ----------GTQQNAAMVEQQTAASH 672
Query: 715 ELRRAAQELKDMVGR 729
L A L ++ +
Sbjct: 673 GLASEAAALNALLAQ 687
>pir||C83107 chemotactic transducer PctB PA4310 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950533|gb|AAG07698.1|AE004847_5 (AE004847)
chemotactic transducer PctB [Pseudomonas aeruginosa]
Length = 629
Score = 201 bits (507), Expect = 2e-50
Identities = 195/746 (26%), Positives = 319/746 (42%), Gaps = 128/746 (17%)
Query: 1 MQFRKKIILMAIMSAVITMAIFGGVTIYSFNKVYGVIKGEIQAPAIEQGGQLAMSAAEVA 60
++F KI+L A + + T ++F T+Y+ + I+ +++ E G ++A+ V
Sbjct: 5 LKFSHKILLAAALVVIATFSLF---TLYNDSLQRASIREDLEDYLHEMG---EITASNVQ 58
Query: 61 EKMFDDFFARVADYGTMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVYF 120
+ R+ +A + ++ S ET + LL + L + Y
Sbjct: 59 NWLS----GRILLIENLAQTLARD------HSPETT--QALLEQ----PLLGSTFLFTYL 102
Query: 121 GDEEGHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVITYAVPVYV 180
G +G P +LP YDPR RPWY A G +TEPY + A + V+T A P
Sbjct: 103 GQTDGTYTARPTSDLPADYDPRRRPWYNAATSAGQTTLTEPYMEPAIHELVLTIASPARQ 162
Query: 181 NGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPE 240
GQ GV+G D+ + T++ + G GY ++ +G LVHP+++ + K
Sbjct: 163 GGQPFGVVGGDLSLQTVVKIINSLDFGGMGYAFLVSGDGKILVHPDKDQVMK-------S 215
Query: 241 LKDLADELKKGKDEGYVLYTFQGIKKIGGY---KRLKTTGWIVVATVPLSDITGPILSAT 297
L D+ G+ G +I + K L W + +V
Sbjct: 216 LSDVYPRNTPKIGSGFSEAELHGNTRILSFSPVKGLSGLDWYIGISVD-----------K 264
Query: 298 DTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSE 357
D A + + + +VAI++++ + + PL + A Q +A+G +
Sbjct: 265 DKAYAMLTKLRTSAIVAALIAVVAIVLLLGMLIRVLMQPLTDMGRAMQDIAQGE----GD 320
Query: 358 YLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRD 417
K+++ DE GAL +F ++ +ER+ E EV G R
Sbjct: 321 LTKRLKVTSNDEFGALAISF--------------NRFVERIHES------IREVAGTARQ 360
Query: 418 IIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEA-- 475
+ + + V S+ + E +N R N++A AIN++ A Q+++ A
Sbjct: 361 LHDVAQLVVNASNSSMANSDEQSN----RTNSVA-------AAINELGAAAQEIARNAAD 409
Query: 476 --QRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIED 533
+ ++ DG ++V QT +RAM E S E
Sbjct: 410 ASHHASDANHQAEDGKQVVEQT----IRAMNELS------------------------EK 441
Query: 534 IQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVV 593
I + IE S+ NI +I VI I+EQTNLLALNAAIEAARAGEAGRGFAVV
Sbjct: 442 ISASCANIEALNSRTV----NIGQILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVV 497
Query: 594 AQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANI 653
A E+R LA ++++A I+ +I+++ +EAV E ES E +AN
Sbjct: 498 ADEVRNLAHRAQESAQQIQKMIEELQIGAQEAVSTMTESQRYSLESVE--------IANR 549
Query: 654 ATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAI 713
A ER+++V +I A E A + E+++ ++ +
Sbjct: 550 A------GERLSSVTGRIAEIDGMNQSVATATEEQTAVVDSLNMDITEINTLNQEGVENL 603
Query: 714 EELRRAAQELKDMVGRMRQIVGKFKV 739
+ RA EL+ GR+RQ+V FK+
Sbjct: 604 QATLRACGELETQAGRLRQLVDSFKI 629
>pir||H83106 chemotactic transducer PctC PA4307 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950530|gb|AAG07695.1|AE004847_2 (AE004847)
chemotactic transducer PctC [Pseudomonas aeruginosa]
Length = 632
Score = 199 bits (502), Expect = 6e-50
Identities = 173/633 (27%), Positives = 274/633 (42%), Gaps = 101/633 (15%)
Query: 112 NKDVSYVYFGDE-EGHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQW 170
+++ + VY G+ G M P D +PEGYDPR R WY A I+TEP+ DA TG+
Sbjct: 96 SRNFASVYLGEAASGTFTMRPYDAMPEGYDPRTRAWYKDALAADRLIVTEPFVDAGTGEQ 155
Query: 171 VITYAVPVYVNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFI 230
++ ++PV GQ GV D+ + TL +K GY ++ G L+HP+ +
Sbjct: 156 ILAMSLPVRHAGQLLGVAAGDMKLETLTAILNSLKFDGAGYAFLVSDAGKILLHPDSGLV 215
Query: 231 NKLNIFQVPELKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDIT 290
LK LA+ KG G+ ++ + + V +P
Sbjct: 216 ----------LKTLAEAYPKGAPN-----IVPGVHEVELDGSSQFVSFTPVKGLPGVTWY 260
Query: 291 GPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEG 350
++ DTA + + + +V I++++ + + PL + A Q +A+G
Sbjct: 261 VALVLDRDTAYSMLSEFRTSAIVATLIAVVGIMLLLGMLIRVLMQPLTDMGRAMQDIAQG 320
Query: 351 RLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVE 410
+ K+++ DE G L NA ++ +ER+ E E
Sbjct: 321 E----GDLTKRLKVTSNDEFGTL--------------ANAFNRFVERIHES------IRE 356
Query: 411 VRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQ 470
V G R + + + V S+ + E +N R N++A AIN++ A Q+
Sbjct: 357 VAGTARQLHDVAQLVVNASNSSMANSDEQSN----RTNSVA-------AAINELGAAAQE 405
Query: 471 VSIEA----QRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDE 526
++ A + ++ DG ++V QT +RAM E S
Sbjct: 406 IARNAADASHHASDANHQAEDGKQVVEQT----IRAMNELS------------------- 442
Query: 527 ALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEA 586
E I + IE S+ NI +I VI I+EQTNLLALNAAIEAARAGEA
Sbjct: 443 -----EKISASCANIEALNSRTV----NIGQILEVIKGISEQTNLLALNAAIEAARAGEA 493
Query: 587 GRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDT 646
GRGFAVVA E+R LA ++++A I+ +I+++ +EAV E ES E
Sbjct: 494 GRGFAVVADEVRNLAHRAQESAQQIQKMIEELQVGAREAVATMTESQRYSLESVE----- 548
Query: 647 IGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAI 706
+AN A ER+ +V +I A E A + E+++
Sbjct: 549 ---IANRA------GERLGSVTSRIGEIDSMNQSVATATEEQTAVVDSLNMDITEINTLN 599
Query: 707 EQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
++ ++ RA EL+ GR+R +V FK+
Sbjct: 600 QEGVENLQATLRACGELETQAGRLRHLVDSFKI 632
>pir||A72254 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981993|gb|AAD36498.1|AE001795_1 (AE001795)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 566
Score = 199 bits (500), Expect = 1e-49
Identities = 110/350 (31%), Positives = 188/350 (53%)
Query: 390 AISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANA 449
A+ LE+++ GDLS + ++ + E I + + R+ + + + +++E+ +
Sbjct: 217 AVLSALEKISSGDLSVSVDIKSKDEFGLIAQKLNETVGNLRKMVQEIDKSQDEVERVSEE 276
Query: 450 LAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGA 509
L +S+ + A+ ++ A +S E Q +I E+T G V+ S+ + ++E S
Sbjct: 277 LFALSQQLRSALEEIARASDTISKEVQNASASIEEVTSGSEEVSANSQNISKLIQEISEN 336
Query: 510 VTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQT 569
+ A G + +EA+K++ED+ + VS V E +RNIEEI I SIAEQT
Sbjct: 337 ADNIADFARNGQRVLEEAVKKVEDVSENSRETADVVSNVTESARNIEEIVRTIQSIAEQT 396
Query: 570 NLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEAT 629
NLLALNAAIEAARAGEAGRGFAVVA EIRKLAEES++A + I I++ I + ++ E +
Sbjct: 397 NLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESQKATEEISQILENIREGVERTNEMS 456
Query: 630 KEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLA 689
K+ V + ++ + ++ I T +++ + R+ + ++ AL+ +A
Sbjct: 457 KKNVEITKDARRLVEESYESFNQIVTRIEDLAARIEGIAASAQELSAASEEMSSALDAVA 516
Query: 690 ASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+ EEVS I +Q A + + ELK + +++ V +FK+
Sbjct: 517 KTTTTVADEVEEVSENITEQEKAAKRIADIGTELKKLSDELKEDVERFKI 566
>dbj|BAA23413.1| (D86947) chemotactic transducer [Pseudomonas aeruginosa]
Length = 629
Score = 198 bits (499), Expect = 1e-49
Identities = 172/630 (27%), Positives = 271/630 (42%), Gaps = 106/630 (16%)
Query: 117 YVYFGDEEGHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVITYAV 176
+ Y G +G P +LP YDPR RPWY A G +TEPY + A + V+T A
Sbjct: 99 FTYLGQTDGTYTARPTSDLPADYDPRRRPWYNAATSAGQTTLTEPYMEPAIHELVLTIAS 158
Query: 177 PVYVNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIF 236
P GQ GV+G D+ + T++ + G GY ++ +G LVHP+++ + K
Sbjct: 159 PARQGGQPFGVVGGDLSLQTVVKIINSLDFGGMGYAFLVSGDGKILVHPDKDQVMK---- 214
Query: 237 QVPELKDLADELKKGKDEGYVLYTFQGIKKIGGY---KRLKTTGWIVVATVPLSDITGPI 293
L D+ G+ G +I + K L W + +V
Sbjct: 215 ---SLSDVYPRNTPKIGSGFSEAELHGNTRILSFSPVKGLSGLDWYIGISVD-------- 263
Query: 294 LSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLK 353
D A + + + +VAI++++ + + PL + A Q +A+G
Sbjct: 264 ---KDKAYAMLTKLRTSAIVAALIAVVAIVLLLGMLIRVLMQPLTDMGRAMQDIAQGE-- 318
Query: 354 QVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRG 413
+ K+++ DE GAL +F ++ +ER+ E EV G
Sbjct: 319 --GDLTKRLKVTSNDEFGALAISF--------------NRFVERIHES------IREVAG 356
Query: 414 ELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSI 473
R + + + V S+ + E +N R N++A AIN++ A Q+++
Sbjct: 357 TARQLHDVAQLVVNASNSSMANSDEQSN----RTNSVA-------AAINELGAAAQEIAR 405
Query: 474 EA----QRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALK 529
A + ++ DG ++V QT +RAM E S
Sbjct: 406 NAADASHHASDANHQAEDGKQVVEQT----IRAMNELS---------------------- 439
Query: 530 RIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRG 589
E I + IE S+ NI +I VI I+EQTNLLALNAAIEAARAGEAGRG
Sbjct: 440 --EKISASCANIEALNSRTV----NIGQILEVIKGISEQTNLLALNAAIEAARAGEAGRG 493
Query: 590 FAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGY 649
FAVVA E+R LA ++++A I+ +I+++ +EAV E ES E
Sbjct: 494 FAVVADEVRNLAHRAQESAQQIQKMIEELQIGAQEAVSTMTESQRYSLESVE-------- 545
Query: 650 LANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQ 709
+AN A ER+++V +I A E A + E+++ ++
Sbjct: 546 IANRA------GERLSSVTGRIAEIDGMNQSVATATEEQTAVVDSLNMDITEINTLNQEG 599
Query: 710 TAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
++ A EL+ GR+RQ+V FK+
Sbjct: 600 VENLQATLLACGELETQAGRLRQLVDSFKI 629
>dbj|BAA75352.1| (AB011838) metyl-accepting chemotaxis protein [Bacillus halodurans]
Length = 667
Score = 196 bits (494), Expect = 6e-49
Identities = 124/415 (29%), Positives = 225/415 (53%), Gaps = 17/415 (4%)
Query: 335 APLEKLKYAAQALAE-GRLKQVSEYLKQIRYLERDEIGALIQAFEA-VSKDLVGTLNAIS 392
AP+EK Y L + V+++++ I + +I F +++ + + I+
Sbjct: 260 APIEKAGYGIYLLTPLSSVLAVTDHIQMITIMIMAVFTVIIVLFAIWIARSMSRPIRLIT 319
Query: 393 KKLERLAEGDL-SNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALA 451
++ +A GDL S+ L ++ + E+ + ++ + +E I + + A+ + + L+
Sbjct: 320 SHVQTIASGDLTSSDLQIKRQDEIGILAHNVNQMATNLKEVIHQVGDSADRVAASSQQLS 379
Query: 452 QVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVT 511
S++V+ + Q++E+IQQV+ +++Q +NE T + V+ + ++ A + + +
Sbjct: 380 ASSEEVSRSSEQISESIQQVASGSEKQSSGVNESTLSLEEVSSSVQQIAEASVQITESAN 439
Query: 512 EVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNL 571
+ A EG Q + ++ + I ++ + +AE S+ I I +VITSIAEQTNL
Sbjct: 440 STIEKAKEGGQSVENNVETMNKIHESVTDSVQITKMLAERSKEINNILDVITSIAEQTNL 499
Query: 572 LALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSII-------DKITDEIKE 624
LALNAAIEAARAGE G+GFAVVA E+RKLAE S+ ++ I I+ D+ + +
Sbjct: 500 LALNAAIEAARAGEHGKGFAVVADEVRKLAESSQHSSQQISEIVVEIQKEMDRTSTAMNG 559
Query: 625 AVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRA 684
+E K+G++V E+ ++ I +A E E M E+I EV++ +
Sbjct: 560 VMEEVKDGLTVANETKTHFQEIIQSTNQVA----EQIESMAATSEEI---SAEVEQVSAS 612
Query: 685 LENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+A +AE T+ SA++V++A E+Q A +EE+ +AQ L M +R+++ KFKV
Sbjct: 613 FNEIAVTAENTSDSAQDVAAASEEQLATMEEVTSSAQYLSQMATDLRELLSKFKV 667
>dbj|BAB07634.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 667
Score = 195 bits (491), Expect = 1e-48
Identities = 124/415 (29%), Positives = 224/415 (53%), Gaps = 17/415 (4%)
Query: 335 APLEKLKYAAQALAE-GRLKQVSEYLKQIRYLERDEIGALIQAFEA-VSKDLVGTLNAIS 392
AP+EK Y L + V+++++ I + +I F +++ + + I+
Sbjct: 260 APIEKAGYGIYLLTPLSSVLAVTDHIQMITIMIMAVFTVIIVLFAIWIARSMSRPIRLIT 319
Query: 393 KKLERLAEGDL-SNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALA 451
++ +A GDL S+ L ++ + E+ + ++ + +E I + + A+ + + L+
Sbjct: 320 SHVQTIASGDLTSSDLQIKRQDEIGILAHNVNQMATNLKEVIHQVGDSADRVAASSQQLS 379
Query: 452 QVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVT 511
S++V+ + Q++E+IQQV+ +++Q +NE T + V+ + ++ A + + +
Sbjct: 380 ASSEEVSRSSEQISESIQQVASGSEKQSSGVNESTLSLEEVSSSVQQIAEASVQITESAN 439
Query: 512 EVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNL 571
+ A EG Q + ++ + I ++ + +AE S+ I I +VITSIAEQTNL
Sbjct: 440 STIEKAKEGGQSVENNVETMNKIHESVTDSVQITKMLAERSKEINNILDVITSIAEQTNL 499
Query: 572 LALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSII-------DKITDEIKE 624
LALNAAIEAARAGE G+GFAVVA E+RKLAE S+ ++ I I+ D+ + +
Sbjct: 500 LALNAAIEAARAGEHGKGFAVVADEVRKLAESSQHSSQQISEIVVEIQKEMDRTSTAMNG 559
Query: 625 AVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRA 684
+E K+G++V E+ ++ I +A E E M E+I EV++ +
Sbjct: 560 VMEEVKDGLTVANETKTHFQEIIQSTNQVA----EQIESMAATSEEI---SAEVEQVSAS 612
Query: 685 LENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+A AE T+ SA++V++A E+Q A +EE+ +AQ L M +R+++ KFKV
Sbjct: 613 FNEIAVIAENTSDSAQDVAAASEEQLATMEEVTSSAQYLSQMATDLRELLSKFKV 667
>dbj|BAA23410.1| (D86947) chemotactic transducer [Pseudomonas aeruginosa]
Length = 632
Score = 193 bits (485), Expect = 6e-48
Identities = 171/633 (27%), Positives = 272/633 (42%), Gaps = 101/633 (15%)
Query: 112 NKDVSYVYFGDE-EGHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQW 170
+++ + VY G+ G M P D +PEGYDPR R WY A I+TEP+ DA TG+
Sbjct: 96 SRNFASVYLGEAASGTFTMRPYDAMPEGYDPRTRAWYKDALAADRLIVTEPFVDAGTGEQ 155
Query: 171 VITYAVPVYVNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFI 230
++ ++PV GQ GV + + TL +K GY ++ G L+HP+ +
Sbjct: 156 ILAMSLPVRHAGQLLGVAAGEWKLETLTAILNSLKFDGAGYAFLVSDAGKILLHPDSGLV 215
Query: 231 NKLNIFQVPELKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDIT 290
LK LA+ KG G+ ++ + + V +P
Sbjct: 216 ----------LKTLAEAYPKGAPN-----IVPGVHEVELDGSSQFVSFTPVKGLPGVTWY 260
Query: 291 GPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEG 350
++ DTA + + + +V I++++ + + PL + A Q +A+G
Sbjct: 261 VALVLDRDTAYSMLSEFRTSAIVATLIAVVGIMLLLGMLIRVLMQPLTDMGRAMQDIAQG 320
Query: 351 RLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVE 410
+ K+++ DE G L NA ++ +ER+ E E
Sbjct: 321 E----GDLTKRLKVTSNDEFGTL--------------ANAFNRFVERIHES------IRE 356
Query: 411 VRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQ 470
V G R + + + V S+ + E +N R N++A AIN++ A Q+
Sbjct: 357 VAGTARQLHDVAQLVVNASNSSMANSDEQSN----RTNSVA-------AAINELGAAAQE 405
Query: 471 VSIEA----QRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDE 526
++ A + ++ DG ++V QT +RAM E S
Sbjct: 406 IARNAADASHHASDANHQAEDGKQVVEQT----IRAMNELS------------------- 442
Query: 527 ALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEA 586
E I + IE S+ NI +I VI I+EQTNLLALNAAIEAAR GEA
Sbjct: 443 -----EKISASCANIEALNSRTV----NIGQILEVIKGISEQTNLLALNAAIEAARDGEA 493
Query: 587 GRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDT 646
GRGFAVVA E+R LA ++++A I+ +I+++ +EAV E ES E
Sbjct: 494 GRGFAVVADEVRNLAHRAQESAQQIQKMIEELQVGAREAVATMTESQRYSLESVE----- 548
Query: 647 IGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAI 706
+AN A ER+ +V +I A E A + E+++
Sbjct: 549 ---IANRA------GERLGSVTSRIGEIDSMNQCVATATEEQTAVVDSLNMDITEINTLN 599
Query: 707 EQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
++ ++ RA EL+ GR+R +V FK+
Sbjct: 600 QEGVENLQATLRACGELETQAGRLRHLVDSFKI 632
>pir||H71317 probable methyl-accepting chemotaxis protein (mcp2-1) - syphilis
spirochete >gi|3322777|gb|AAC65475.1| (AE001225)
methyl-accepting chemotaxis protein (mcp2-1) [Treponema
pallidum]
Length = 845
Score = 190 bits (479), Expect = 3e-47
Identities = 175/773 (22%), Positives = 334/773 (42%), Gaps = 113/773 (14%)
Query: 1 MQFRKKIILMAIMSAVITMAIFGGV-TIYSFNKVYGVIKGEIQAPAIEQGGQLAMSAAEV 59
+ R K+ L+ + A ++ + GG+ +++ N + G I + A + + +
Sbjct: 152 LSLRTKLALVFGLLAFVSGLVQGGILVVFARNSIVGEISSHLAGRARD--------TSSI 203
Query: 60 AEKMFDDFFARVADYGTMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVY 119
E F + G EV++ + R + KK N+D++ +
Sbjct: 204 VEGRIGALFQFLE--GLARLEVLQ---------GSSDRRRAQVDRLKKEAFFNRDIARLA 252
Query: 120 FGDEEGHMYMYPPDELPEGYDPRVRPWYVQAKE------KGGAIITEPYRDAATGQWVIT 173
D G +Y G D R YVQ ++ KG ++ PY ++ VIT
Sbjct: 253 VVDLAGVLY---------GEDGRTH--YVQDRKYFQRAVKGRCYVSAPYPSRSSDDMVIT 301
Query: 174 YAVPVY-VNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFI-N 231
+++PVY + + V+ DV + L + T +G G IA+ID+ G + HP E +
Sbjct: 302 FSIPVYDEDRRVIAVLVADVIWTWLCDITGDFSVGGVGRIAVIDEVGTVVAHPRHEVVAQ 361
Query: 232 KLNIFQVPE--------LKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVAT 283
+ N ++ + + + +++ K +++++G++KIG ++K+TGW VV
Sbjct: 362 QTNYIRLAKEDPATYASVAEFVEKVIKSDSTASHVFSYEGLEKIGSSAKMKSTGWTVVVF 421
Query: 284 VPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYA 343
VP+S+ GP+ + + + AVG ++++ L+V+Y +A + PL
Sbjct: 422 VPVSEFMGPVYTLQNYLL-----------AVGIIVVLFSLIVVYAVARKIVRPLRSTVRV 470
Query: 344 AQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDL---VGTLNAISKKLERLAE 400
+ +A G + ++ + DE+ L Q F + + + T+ + S + R+ +
Sbjct: 471 LEDIAYGE----GDLTVRLPVVGGDEVSLLCQYFNQTMEKIRFAIATVGSSSDDMRRIGD 526
Query: 401 GDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEA 460
+L++ +T E + +I +I V + + E + +E+ + +
Sbjct: 527 -ELASNMT-ETASAVNEITANIDGVKHRVDLQVSGVSEATDTVER-----------IIKT 573
Query: 461 INQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEG 520
I +N +I+ ++ + ++ ++ + + QT E S A+ + A +
Sbjct: 574 IKGLNSSIETQAVNVAQSSSSVEQMVANIVSITQTLERSDEAVHSLAIATAD-------- 625
Query: 521 SQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEA 580
G + L I K++E S ++ E ++VI IA QTNLLA+NAAIEA
Sbjct: 626 ---GRDTLVSSSGI----------TQKISEESGSLLEASSVIQHIASQTNLLAMNAAIEA 672
Query: 581 ARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEI------KEAVEATKEGVS 634
A AGEAG+GFAVVA EIRKLAEES I + ++ EI +AVE + +
Sbjct: 673 AHAGEAGKGFAVVADEIRKLAEESSTQGKTITETLKTLSVEIDTLSTSSKAVEEQFDTIF 732
Query: 635 VIGES--------SETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALE 686
+ + +E +++ + ++ + VKE + + R ++
Sbjct: 733 RLSDQVRTMSRSLTEAMKEQSDGSREVLAAIKSINAATVDVKEGSADMLKGGEVIAREMQ 792
Query: 687 NLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
L E S E+++ + A+ E+ Q K + + V KFKV
Sbjct: 793 RLDDLTSEIARSMNEMAAGAIEINNAVHEVNEITQRSKQSISSLADEVEKFKV 845
>pir||D82218 methyl-accepting chemotaxis protein VC1289 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655776|gb|AAF94448.1| (AE004208) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 631
Score = 183 bits (460), Expect = 5e-45
Identities = 166/660 (25%), Positives = 277/660 (41%), Gaps = 113/660 (17%)
Query: 80 EVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSY------------VYFGDEEGHM 127
+ + AKG+ S+ ++R+ + + F E V Y +++G +G M
Sbjct: 49 DAISSTAAKGI-SDWISIRKSISTAFNAHIEAQNVVPYLQQARNAGGFDDIFYGTTDGAM 107
Query: 128 YMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVITYAVPVYVNGQFKGV 187
Y P+ YDPR RPWY A G IIT Y DA TG ++T A PV +NG GV
Sbjct: 108 YRSHPERNRADYDPRTRPWYKDAASAGKQIITTAYSDAITGALLVTIAEPVRLNGNMSGV 167
Query: 188 IGLDVFVSTLLNETKKIKLGKTGYIAIID-QNGMTLVHPNEEFINKLNIFQVPELKDLAD 246
+G DV + L+ + + GK +ID QNG L HP++ + K V L D
Sbjct: 168 VGADVLIDQLIADVISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLK----PVTTLSSALD 223
Query: 247 --ELKKGKDEGYVL-YTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINK 303
+++ ++G +L G++K + + T W + +DT
Sbjct: 224 MRTIERAANQGELLALKLNGVEKFFFFTAVPDTPWYFAVQMD-----------SDTEYAS 272
Query: 304 MKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIR 363
++ +I V ++V++ + S L ++ A + +A G ++ +++
Sbjct: 273 HSELLTGLITTALLITVIVVVIVSWLVSFLFRDLGRVSKALEEIASGD----ADLTQRLE 328
Query: 364 YLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIR 423
DE+G L F V ++ + KL ++ +
Sbjct: 329 PRSDDEVGQLASNFNT----FVSNMHTMVLKLSHVSAA-----------------LAQQS 367
Query: 424 SVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVS----IEAQRQQ 479
VT E S + + D +++ V AIN++ A Q+++ AQ
Sbjct: 368 KVTAAQAEERSSRIRLQQD---------EINM-VATAINEMAAATQEIAGNADHTAQNAG 417
Query: 480 ETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMS 539
E + G V QT + S++++ E TEV+ + +E H +S
Sbjct: 418 EAVTACVHGAGQVTQT-QRSIQSLAEEVQVATEVI--------------QELEAHGHQIS 462
Query: 540 RIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRK 599
I T I +IAEQTNLLALNAAIEAARAGE GRGFAVVA E+R
Sbjct: 463 TILST-----------------IQNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRV 505
Query: 600 LAEESKQAADNIKSIIDK----------ITDEIKEAVEATKEGVSVIGESSETLRDTIGY 649
L++ + + I+ +I+ I D+ + + + + + S E + T+
Sbjct: 506 LSQRTHASTKEIQQMIETLQATTGKAVGIMDDSRRLADTSVDDANEASVSLEQIHKTVER 565
Query: 650 LANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQ 709
++++AT + +E +V +I R + L A SA E A E+S +EQ+
Sbjct: 566 ISDMATQIASAAEEQASVTSEITRNTVGIRDVSNDLAQEAHSAAEQAAELSELSHELEQE 625
>gb|AAG19270.1| (AE005023) Htr18 transducer; Htr18 [Halobacterium sp. NRC-1]
Length = 790
Score = 182 bits (458), Expect = 9e-45
Identities = 106/388 (27%), Positives = 207/388 (53%), Gaps = 8/388 (2%)
Query: 353 KQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVR 412
++ +E ++ R+E AL A E+ ++D I + +E A+GDL+ L +
Sbjct: 375 QETAEQSRKEAEQSREEAEALAAALESQAQD-------IRETVEHAADGDLTQRLETDTD 427
Query: 413 GE-LRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQV 471
E + I + S+ E +I + + D+ + ++ + +++V A QV+E++Q++
Sbjct: 428 HESMAAIATALNSLLEELEGTIHRIQRFSKDVAESSDHITTSAEEVKRASGQVSESVQEM 487
Query: 472 SIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRI 531
S +A++Q + +++D M ++ T EE + +E + + VS+ G + +A++ +
Sbjct: 488 SADARQQNGIVQDVSDEMTDLSATIEEIASSSDEVAAKSNDAVSVGQSGRARSQDAIEEM 547
Query: 532 EDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFA 591
+ R + + + I EI +I IAEQT++LALNA+IEAARAGEAG GFA
Sbjct: 548 NAVDEQAKRTIAEMEALDDEMTEIGEIVTLIDDIAEQTSMLALNASIEAARAGEAGEGFA 607
Query: 592 VVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLA 651
VVA EI+ L++E+ +A I+S+I + D +AV +E + E T+ DT+ +
Sbjct: 608 VVADEIKSLSKETTEATQEIESLIADVQDSTTDAVTDMQEMGDRLSEGKSTVTDTVETID 667
Query: 652 NIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTA 711
I ++E + + T+ ++ + ++ + + +++TTA AE+ ++A E+QTA
Sbjct: 668 TIVERIEEANGGVQTINTATDEQATTTEEVVTMVDEVGSISDDTTARAEDAAAAAEEQTA 727
Query: 712 AIEELRRAAQELKDMVGRMRQIVGKFKV 739
++ E+ Q+L D + +++ F V
Sbjct: 728 SLTEVTNRIQDLSDQSTDLYELLSDFTV 755
>pir||E72379 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4980935|gb|AAD35514.1|AE001721_13 (AE001721)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 656
Score = 182 bits (457), Expect = 1e-44
Identities = 121/406 (29%), Positives = 215/406 (52%), Gaps = 21/406 (5%)
Query: 342 YAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSK-DLVGTLNAISKKLERLAE 400
Y + LAEGR + + + + G +I A VS +V + +K++R E
Sbjct: 264 YLEELLAEGRKATLGTIVTYVVF------GGVIFAVLFVSMMPVVKRMRQQVEKVKRFGE 317
Query: 401 GDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEA 460
GDL+ + R EL I E ++ + +E I S++E A +L + + +S++ +
Sbjct: 318 GDLTVEFEAKGRDELTQIEESLKEAALSLKEMIVSIIEAAKELSGASEEIKVLSEESHKM 377
Query: 461 INQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEG 520
++E +++ EA + E+T G+ VA +++ + ++ + V A EG
Sbjct: 378 SENLHEEAKKILDEANNMSSALTEVTSGVEEVAASAQNISKITQDLTERSEAVTKAAREG 437
Query: 521 SQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEA 580
+++ + I ++ R + + ++ + ++ I EI + I+SIAEQTNLLALNAAIEA
Sbjct: 438 TERVEAVGGVINKLKGSAERQRDYLRELVDSAKTIGEIVDTISSIAEQTNLLALNAAIEA 497
Query: 581 ARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKE------GVS 634
ARAGEAGRGFAVVA EIRKLAEES++A ++I ++ + I+ +KE ++
Sbjct: 498 ARAGEAGRGFAVVADEIRKLAEESQRATEDIAKMLSSLRTTIEHVENGSKEMFEGVDEIA 557
Query: 635 VIGES-SETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAE 693
V+GE ++ R+ +G + I ++++ T+ T +EQ +E A++N+ E
Sbjct: 558 VMGEEVTKRFREILGRIEEINSMIENTA---ATAQEQGAAAEEMAS----AMDNVTKIVE 610
Query: 694 ETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
S + S IE QT + ++ +AA+ L ++ ++ +V KFKV
Sbjct: 611 GVVESLNRMESLIEDQTTSAAKVSQAAERLSELSEQLSTLVQKFKV 656
Score = 101 bits (250), Expect = 2e-20
Identities = 120/545 (22%), Positives = 239/545 (43%), Gaps = 69/545 (12%)
Query: 147 YVQAKEKGGAIITEPYRDAATGQWVITYAVPVYVNGQFKGVIGLDVFVSTLLNETKKI-- 204
Y++A E G I P + G V+T VP+ G++G + +S + K +
Sbjct: 127 YIKAVE-GKDIFFMP--ETFQGTPVLTVVVPIETMNTRTGIVGFGINLSENSDLWKAVVE 183
Query: 205 --KLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPELKDLADELKKGKDEGYVLYTFQ 262
K K+GY ++ +G L+H + K ++ ++ + +E K G E YV Y +
Sbjct: 184 EGKASKSGYGLLVTSDGKVLIHKDMGNFMK-DVKELGGFEKAFEEAKSG-GEKYVEYEYN 241
Query: 263 GIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAI 322
G KK ++++ + + +T L ++ AT + + V+ G + V+ V++
Sbjct: 242 GEKKYTVWEKVPGYDFYIFSTGYLEELLAEGRKAT---LGTIVTYVVFGGVIFAVLFVSM 298
Query: 323 LVVIYKIASNTLAPLEKLK------YAAQALAEGR--LKQVSEYLKQIRYLERDEIGALI 374
+ V+ ++ +EK+K + A+GR L Q+ E LK+ ++ I ++I
Sbjct: 299 MPVVKRMRQQ----VEKVKRFGEGDLTVEFEAKGRDELTQIEESLKEAALSLKEMIVSII 354
Query: 375 QAFEAVSKDLVGT---LNAISKKLERLAEGDLSNGLTV-EVRGELRDIIEDIRSVTETFR 430
+A +K+L G + +S++ +++E + + + + ++ S E
Sbjct: 355 EA----AKELSGASEEIKVLSEESHKMSENLHEEAKKILDEANNMSSALTEVTSGVEEVA 410
Query: 431 ESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQE---------- 480
S ++ ++ DL +R+ A+ + +++ TE + V I ++ A+RQ++
Sbjct: 411 ASAQNISKITQDLTERSEAVTKAAREGTERVEAVGGVINKLKGSAERQRDYLRELVDSAK 470
Query: 481 TINEITDGMRLVAQTSE--------ESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIE 532
TI EI D + +A+ + E+ RA E G +A+E + +E+ + E
Sbjct: 471 TIGEIVDTISSIAEQTNLLALNAAIEAARAGEAGRGFAV----VADEIRKLAEESQRATE 526
Query: 533 DIQHMMSRIEETVSKVAEMSRNI-----------EEITNVITSI---AEQTNLLALNAAI 578
DI M+S + T+ V S+ + EE+T I E+ N + N A
Sbjct: 527 DIAKMLSSLRTTIEHVENGSKEMFEGVDEIAVMGEEVTKRFREILGRIEEINSMIENTAA 586
Query: 579 EAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGE 638
A G A A + K+ E ++ + ++S+I+ T + +A E +S + E
Sbjct: 587 TAQEQGAAAEEMASAMDNVTKIVEGVVESLNRMESLIEDQTTSAAKVSQAA-ERLSELSE 645
Query: 639 SSETL 643
TL
Sbjct: 646 QLSTL 650
>sp|P54576|MCPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPC >gi|7475621|pir||A69656
methyl-accepting chemotaxis protein mcpC - Bacillus
subtilis >gi|1280446|emb|CAA66052.1| (X97385)
methyl-accepting chemotaxis protein [Bacillus subtilis]
>gi|2633766|emb|CAB13268.1| (Z99111) methyl-accepting
chemotaxis protein [Bacillus subtilis]
Length = 654
Score = 182 bits (457), Expect = 1e-44
Identities = 160/646 (24%), Positives = 302/646 (45%), Gaps = 104/646 (16%)
Query: 104 EFKKIKELNKDVSYVYFGD-EEGHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAII-TEP 161
+ +IK+ + V+ Y G ++ ++Y+ D L + + Y A E ++ TEP
Sbjct: 93 DINEIKDNDDYVAMAYIGTAKKRNVYISKADFLR--ITIQHQDMYKLAAETPDQVVWTEP 150
Query: 162 YRDAATGQWVITYAVPVYVNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMT 221
Y+D TG ++T + + + GV D+ +S + + K K+ G+ + D +G
Sbjct: 151 YKDVVTGDMIVTASKAILDRQKVIGVASYDLKLSAIQSLVNKQKVPYKGFAFLADASGNL 210
Query: 222 LVHPNEEFINKLNIFQVPELKDLADELKKGKDEGYVLYTFQGIKKIGG----YKRLKTTG 277
L HP+ + NI + L+ +A E K GI+ + G Y+ + TG
Sbjct: 211 LAHPSNQ---GKNISKDQTLQTIASEKK-------------GIQDVNGKMVVYQTIGETG 254
Query: 278 WIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPL 337
W V T ++ +D +N+ + + + ++ +++ Y +A P+
Sbjct: 255 WKVGTQFD----TDQLMWISD-KMNRANL------WISLIALIITIILSYFLAKTITGPI 303
Query: 338 EKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLER 397
++L +A++ G L +E +DE+G L + F
Sbjct: 304 QQLIVKTKAVSAGDLTVRAE------SKSKDEVGILTRDFNL------------------ 339
Query: 398 LAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDV 457
++E+++ + E R S G + + + L V+ +
Sbjct: 340 --------------------MVENMKEMVEQVRLSSGKVSDTSEQ-------LTAVAAET 372
Query: 458 TEAINQVNEAIQQVSIEAQRQQ---ETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVV 514
E Q+ +AI++V+ A Q ETINE ++ + +R + E +G + E
Sbjct: 373 NERSGQIAKAIEEVAAGASEQASEVETINEKSESL-------STKIRQIAEEAGGIKERS 425
Query: 515 SIANEGSQKGDEALKRI---EDIQHMMSRIEET-VSKVAEMSRNIEEITNVITSIAEQTN 570
+ + S KG AL ++ + +M ++ EET + + ++NIEE+ I++I++QTN
Sbjct: 426 KSSEDASYKGLHALGQLLMKSNEANMETKKEETMLLDLENQTKNIEEVVTAISNISDQTN 485
Query: 571 LLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATK 630
LLALN +IEAARAGE+GRGFAVVA E+RKLAE+S + +I + I E KEA A
Sbjct: 486 LLALNRSIEAARAGESGRGFAVVADEVRKLAEQSALSTKHISETVKLIQLETKEASHAMV 545
Query: 631 EGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAA 690
E + E + + +T L I +Q + + + +I R EE A+++++A
Sbjct: 546 EASRMNDEQNSAIHETGEVLNTITAEMQSLVQGIDHIYAEIQRMSEEQLAISEAIQSISA 605
Query: 691 SAEETTASAEEVSSAIEQQTAAIEELRRAAQELK----DMVGRMRQ 732
++E+ A+AEEV+++ ++Q +++++ + + LK D++ +R+
Sbjct: 606 ISQESAAAAEEVNASTDEQLVTLDKVKHSTETLKHASQDVINTIRK 651
>pir||G82401 methyl-accepting chemotaxis protein VCA0923 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658359|gb|AAF96820.1| (AE004419) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 652
Score = 180 bits (453), Expect = 4e-44
Identities = 175/745 (23%), Positives = 303/745 (40%), Gaps = 127/745 (17%)
Query: 1 MQFRKKIILMAIMSAVITMAIFGGVTIYSFNKVYGVIKGEIQAPAIEQGGQLAMSAAEVA 60
M+F KI+ + + + T+A+ G + KV I+ + E ++ + AEV
Sbjct: 29 MKFSHKIVAASSVLLLATVALLSGSQYF---KVRDEIRSMVSDSVDEIVDGVSKTTAEVI 85
Query: 61 EKMFDDFFARVADYGTMATEVVKEA-YAKGLDSNETAMREFLLSEFKKIKE---LNKDVS 116
+A Y T E E + + S FLL F K+ +N D S
Sbjct: 86 NGR-----KSIAQYATSLIENNPEPDNVRTIISQPLIKNTFLLVGFGLEKDGSNINNDPS 140
Query: 117 YVYFGDEEGHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVITYAV 176
+ +DPRVRPWY AK G +IT PY D+A+G+ +++ A
Sbjct: 141 W----------------NPGPTWDPRVRPWYKDAKNAGKLVITAPYADSASGEILVSVAT 184
Query: 177 PVY--VNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLN 234
PV GQF G I DV ++ L ++KL GY+ I+ ++G T+ HP +EF K
Sbjct: 185 PVKDSATGQFLGSIFYDVSLAELAELVNEVKLFDAGYVFIVSEDGTTIAHPKKEFNGK-- 242
Query: 235 IFQVPELKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPIL 294
+ + E K D V+ G + ++ W V +
Sbjct: 243 -----PMSEFLGESKINVDTHQVI--INGKPYAVSFSDVEGEDWYVGVVIDEE------- 288
Query: 295 SATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQ 354
A+++++ + + VI V +L+ I ++ + PL+ L A Q +A G
Sbjct: 289 -IAYAALDELRRSTLIFTVIALVISVFVLLFIVRVL---MKPLDTLNDAIQNVASG---- 340
Query: 355 VSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGE 414
EGDL+ L+ E
Sbjct: 341 ---------------------------------------------EGDLTQRLSTNTDEE 355
Query: 415 LRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIE 474
+ + TET ++ + + ++ + + + + + EA+ ++Q++
Sbjct: 356 FAKLAIGFNTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATA 415
Query: 475 AQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDI 534
T +++ + AQ + + + ++ + A T+VV+ + K I+ +
Sbjct: 416 MHEMATTSSDVANN----AQGAASAAKVADDAAAAGTDVVT----------KTTKAIDTL 461
Query: 535 QHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVA 594
+ + V + + NIE + VI IA+QTNLLALNAAIEAARAGE+GRGFAVVA
Sbjct: 462 SATIDAAVDDVKVLESATANIETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVA 521
Query: 595 QEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIA 654
E+R LA+ ++Q+ T EI+ +E + G + + + +DT N A
Sbjct: 522 DEVRTLAQRTQQS-----------TTEIRNMIEKLQSGANAVAVAMSHSKDTAASAVNQA 570
Query: 655 TLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIE 714
E E++ +QI ++ A E + AEE + ++ +Q + +
Sbjct: 571 QGANEALEKIRLAIQQISDMNIQI---ASAAEEQSLVAEEINNNTVKIKDLSDQVAESAD 627
Query: 715 ELRRAAQELKDMVGRMRQIVGKFKV 739
E + Q + + I+ KFKV
Sbjct: 628 EANMSMQIQTENIREQDAILNKFKV 652
>pir||E81444 probable methyl-accepting chemotaxis signal transduction protein
Cj0262c [imported] - Campylobacter jejuni (strain NCTC
11168) >gi|6967739|emb|CAB72730.1| (AL139074) putative
methyl-accepting chemotaxis signal transduction protein
[Campylobacter jejuni]
Length = 665
Score = 180 bits (452), Expect = 5e-44
Identities = 168/595 (28%), Positives = 274/595 (45%), Gaps = 68/595 (11%)
Query: 99 EFLLSEFKKIKELNKDVSYVYFG-DEEGHMYMYPPD--ELPEGYDPRVRPWYVQAKEKGG 155
E L++ K IK++N D VY G D G Y +L +GYD + RPWY AKE
Sbjct: 89 EELINLIKVIKKVN-DYDLVYVGFDNTGKNYQSDDQILDLSKGYDTKNRPWYKAAKEAKK 147
Query: 156 AIITEPYRDAATGQWVITYAVPVY-VNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAI 214
I+TEPY+ AA+G+ +TYA P Y NG F+GV+G D ++ + + +
Sbjct: 148 LIVTEPYKSAASGEVGLTYAAPFYDRNGNFRGVVGGDYDLANFSTNVLTVGKSDNTFTEV 207
Query: 215 IDQNGMTLVH--------PNEEFINKLNIFQV-PELKD--LADELKKGKDEGYVLYTFQG 263
+D G L + E IN N + P L D D L KD V Y
Sbjct: 208 LDSEGTILFNDEVAKILTKTELSINIANAIKANPALIDPRNQDTLFTAKDHQGVDYAIMC 267
Query: 264 IKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAIL 323
R+ T V T ++ I MK ++ VG + I+ L
Sbjct: 268 NSAFNPLFRICTITENKVYTEAVNSIL-------------MKQVI-----VGIIAIIIAL 309
Query: 324 VVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKD 383
++I + S +L+PL ++ + + + ++ + I DE G Q A++++
Sbjct: 310 ILIRFLISRSLSPLAAIQTGLTSFFD-FINYKTKNVSTIEVKSNDEFG---QISNAINEN 365
Query: 384 LVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDL 443
++ T + + + + E ++V G L I T L+E+ N L
Sbjct: 366 ILATKRGLEQDNQAVKES--VQTVSVVEGGNLTARI--------TANPRNPQLIELKNVL 415
Query: 444 EKRANAL-AQVSKDVTEAINQVNEAIQQVSIEAQRQ------QETINEITDGMRLVAQTS 496
K + L A+V D+ AI+++ E + + + + + T N + D + + + S
Sbjct: 416 NKLLDVLQARVGSDM-NAIHKIFEEYKSLDFRNKLENASGSVELTTNALGDEIVKMLKQS 474
Query: 497 EESVRAMEEFSG----AVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMS 552
+ A+ SG AV + + +N +Q +E +E+I M + S V S
Sbjct: 475 SDFANALANESGKLQTAVQSLTTSSNSQAQSLEETAAALEEITSSMQNVSVKTSDVITQS 534
Query: 553 RNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIK 612
I+ +T +I IA+Q NLLALNAAIEAARAGE GRGFAVVA E+RKLAE ++++ I+
Sbjct: 535 EEIKNVTGIIGDIADQINLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIE 594
Query: 613 SIIDKITDEIKEAVEATKE---GVSVIGES----SETLRDTIGYLANIATLLQET 660
+ + + I + E+ KE G++ I +S +T +D + +AN + ++ T
Sbjct: 595 ANTNLLVQSINDMAESIKEQTAGITQINDSVAQIDQTTKDNV-EIANESAIISST 648
>gi|11498650 methyl-accepting chemotaxis protein (tlpC-2) [Archaeoglobus
fulgidus] >gi|7483868|pir||E69380 methyl-accepting
chemotaxis protein (tlpC-2) homolog - Archaeoglobus
fulgidus >gi|2649548|gb|AAB90198.1| (AE001031)
methyl-accepting chemotaxis protein (tlpC-2)
[Archaeoglobus fulgidus]
Length = 834
Score = 180 bits (452), Expect = 5e-44
Identities = 121/398 (30%), Positives = 212/398 (52%), Gaps = 30/398 (7%)
Query: 364 YLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAE------GDLSNGLTVEVRGELRD 417
Y E+ EI ++++ E +++ + K++E + LSNG+ G L
Sbjct: 421 YNEKGEIIGVVESIEDLTE-----IKEKEKEIEEMLAYTGRCLNMLSNGIRELQAGNLDV 475
Query: 418 IIEDIRS-----VTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVS 472
+E IR E F E G + E+ L A ++ EA+NQ+N +QQ+S
Sbjct: 476 RLEKIRDDEFGETFEAFNEFAGRMQEIVRKLADDMKETANQVREAAEAVNQMNAGMQQIS 535
Query: 473 IEAQR---QQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGD---- 525
+Q+ E ++ + + L + +EE ++ + A+E SQ +
Sbjct: 536 SASQQIATGSENLSRLANASTLDLKAAEE---IFKDLTARAENSAKFADEASQNAEMAKK 592
Query: 526 EALKRIEDIQHMMSRIE---ETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAAR 582
E +K +E I+ ++ +E + V + + RNI ++T I SIA+QTNLLALNAAIEAAR
Sbjct: 593 EGVKALEIIKSIVQEVENASKVVETLEQAVRNIGKVTERIKSIADQTNLLALNAAIEAAR 652
Query: 583 AGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSET 642
AGE GRGFAVVA E+RKLAEES+++ + I I+ + +E ++ +EAT + + SE
Sbjct: 653 AGEHGRGFAVVADEVRKLAEESRKSTEEIDEIVRNVQEETRKVIEATNKVKESSLQGSEG 712
Query: 643 LRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEV 702
+ + + IA + +E + V + ++++ R E +A++AEE AS+EE
Sbjct: 713 IENALMKAGEIAEAVNRINEMLGQVAAKAEEGLAKIEQLARNFEEVASTAEENAASSEET 772
Query: 703 SSAIEQQTAAIEELRRAAQELKDMV-GRMRQIVGKFKV 739
S+AIE+QTAA++++ A +++ ++ ++ I+ F++
Sbjct: 773 SAAIEEQTAAVQQVSIAMEKVNEIANATLQTIIENFRI 810
>gi|11498639 methyl-accepting chemotaxis protein (tlpC-1) [Archaeoglobus
fulgidus] >gi|7483867|pir||B69379 methyl-accepting
chemotaxis protein (tlpC-1) homolog - Archaeoglobus
fulgidus >gi|2649560|gb|AAB90209.1| (AE001032)
methyl-accepting chemotaxis protein (tlpC-1)
[Archaeoglobus fulgidus]
Length = 677
Score = 180 bits (451), Expect = 6e-44
Identities = 115/350 (32%), Positives = 188/350 (52%), Gaps = 13/350 (3%)
Query: 403 LSNGLTVEVRGELRDIIEDIRS-----VTETFRESIGSLVEMANDLEKRANALAQVSKDV 457
LSNG+ G L +E IR E F E G + E+ L A ++
Sbjct: 304 LSNGIRELQAGNLDVRLEKIRDDEFGETFEAFNEFAGRMQEIVRKLADDMKETANQVREA 363
Query: 458 TEAINQVNEAIQQVSIEAQR---QQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVV 514
EA+NQ+N +QQ+S +Q+ E ++ + + L + +EE R + + V
Sbjct: 364 AEAVNQMNAGMQQISSASQQIATGSENLSRLANASTLDLKAAEEIFRELAAKADESNRQV 423
Query: 515 SIANEGS----QKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTN 570
A E S Q+G AL+ I+ I + + V + + RNI ++T I SIA+QTN
Sbjct: 424 EAAAERSRIAEQEGGRALEIIKSIVQEVENASKVVETLEQAVRNIGKVTERIKSIADQTN 483
Query: 571 LLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATK 630
LLALNAAIEAARAGE GRGFAVVA E+RKLAEES+++ + I I+ + +E ++ +EAT
Sbjct: 484 LLALNAAIEAARAGEHGRGFAVVADEVRKLAEESRKSTEEIDEIVRNVQEETRKVIEATN 543
Query: 631 EGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAA 690
+ + SE + I I + ++ + V + ++++ R E +A+
Sbjct: 544 KVKESSLQGSEGIEAAIKQAGEILGAINRINDMVKAVASKAEEGLAKIEQLARNFEEVAS 603
Query: 691 SAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMV-GRMRQIVGKFKV 739
+AEE AS+EE S+AIE+QTAA++++ A +++ ++ ++ I+ F++
Sbjct: 604 TAEENAASSEETSAAIEEQTAAVQQVSIAMEKVNEIANATLQTIIENFRI 653
>pir||G72316 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981455|gb|AAD35999.1|AE001756_2 (AE001756)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 661
Score = 180 bits (451), Expect = 6e-44
Identities = 120/406 (29%), Positives = 214/406 (52%), Gaps = 21/406 (5%)
Query: 342 YAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSK-DLVGTLNAISKKLERLAE 400
Y + LAEGR + + + + G +I A VS +V + +K++R E
Sbjct: 269 YLDELLAEGRKATLGTIVTYVVF------GGVIFAVLFVSMMPVVKRMRQQVEKVKRFGE 322
Query: 401 GDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEA 460
GDL+ + EL I E ++ + +E I S++E A +L + + +S++ +
Sbjct: 323 GDLTVEFEAKGEDELTQIEESLKEAVLSLKEMIVSIIEAAKELSGASEEIKVLSEESHKM 382
Query: 461 INQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEG 520
++E +++ EA + E+T G+ VA +++ + ++ + V A EG
Sbjct: 383 SENLHEEAKKILDEANNMSSALTEVTSGVEEVAASAQNISKITQDLTERSEAVTKAAREG 442
Query: 521 SQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEA 580
+++ + I ++ R + + ++ + ++ I EI + I+SIAEQTNLLALNAAIEA
Sbjct: 443 TERVEAVGGVINKLKGSAERQRDYLRELVDSAKTIGEIVDTISSIAEQTNLLALNAAIEA 502
Query: 581 ARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKE------GVS 634
ARAGEAGRGFAVVA EIRKLAEES++A ++I ++ + I+ +KE ++
Sbjct: 503 ARAGEAGRGFAVVADEIRKLAEESQRATEDIAKMLSSLRTTIEHVENGSKEMFEGVDEIA 562
Query: 635 VIGES-SETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAE 693
V+GE ++ R+ +G + I ++++ T+ T +EQ +E A++N+ E
Sbjct: 563 VMGEEVTKRFREILGRIEEINSMIENTA---ATAQEQGAAAEEMAS----AMDNVTKIVE 615
Query: 694 ETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
S + S IE QT + ++ +AA+ L ++ ++ +V KFKV
Sbjct: 616 GVVESLNRMESLIEDQTTSAAKVSQAAERLSELSEQLSTLVQKFKV 661
Score = 98.7 bits (242), Expect = 2e-19
Identities = 106/483 (21%), Positives = 214/483 (43%), Gaps = 62/483 (12%)
Query: 205 KLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPELKDLADELKKGKDEGYVLYTFQGI 264
KLG++GY ++ +G L+H + K ++ ++ + +E KKG E YV Y + G
Sbjct: 191 KLGESGYGLLVTSDGKVLIHKDMGNFMK-DVKELGGFEKAFEEAKKG-GEKYVEYEYNGE 248
Query: 265 KKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILV 324
KK ++++ + + +T L ++ AT + + V+ G + V+ V+++
Sbjct: 249 KKYTVWEKVPGYDFYIFSTGYLDELLAEGRKAT---LGTIVTYVVFGGVIFAVLFVSMMP 305
Query: 325 VIYKIASNTLAPLEKLK--------YAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQA 376
V+ ++ +EK+K +A E L Q+ E LK+ ++ I ++I+A
Sbjct: 306 VVKRMRQQ----VEKVKRFGEGDLTVEFEAKGEDELTQIEESLKEAVLSLKEMIVSIIEA 361
Query: 377 FEAVSKDLVGT---LNAISKKLERLAEGDLSNGLTV-EVRGELRDIIEDIRSVTETFRES 432
+K+L G + +S++ +++E + + + + ++ S E S
Sbjct: 362 ----AKELSGASEEIKVLSEESHKMSENLHEEAKKILDEANNMSSALTEVTSGVEEVAAS 417
Query: 433 IGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQE----------TI 482
++ ++ DL +R+ A+ + +++ TE + V I ++ A+RQ++ TI
Sbjct: 418 AQNISKITQDLTERSEAVTKAAREGTERVEAVGGVINKLKGSAERQRDYLRELVDSAKTI 477
Query: 483 NEITDGMRLVAQTSE--------ESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDI 534
EI D + +A+ + E+ RA E G +A+E + +E+ + EDI
Sbjct: 478 GEIVDTISSIAEQTNLLALNAAIEAARAGEAGRGFAV----VADEIRKLAEESQRATEDI 533
Query: 535 QHMMSRIEETVSKVAEMSRNI-----------EEITNVITSI---AEQTNLLALNAAIEA 580
M+S + T+ V S+ + EE+T I E+ N + N A A
Sbjct: 534 AKMLSSLRTTIEHVENGSKEMFEGVDEIAVMGEEVTKRFREILGRIEEINSMIENTAATA 593
Query: 581 ARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESS 640
G A A + K+ E ++ + ++S+I+ T + +A E +S + E
Sbjct: 594 QEQGAAAEEMASAMDNVTKIVEGVVESLNRMESLIEDQTTSAAKVSQAA-ERLSELSEQL 652
Query: 641 ETL 643
TL
Sbjct: 653 STL 655
>pir||F82382 methyl-accepting chemotaxis protein VCA1069 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658515|gb|AAF96963.1| (AE004432) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 639
Score = 178 bits (446), Expect = 2e-43
Identities = 144/613 (23%), Positives = 261/613 (42%), Gaps = 82/613 (13%)
Query: 119 YFGDEEGHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVITYAVPV 178
Y+G+E+G M+ P YDPRVR WY +AK G I TEPY V+T A PV
Sbjct: 108 YYGNEQGEMFRQDPSLNTADYDPRVRGWYKEAKAAGKPITTEPYVSVTMQTLVVTLAEPV 167
Query: 179 YVNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQV 238
GQ GV ++ + L+ + I++ GY +++Q G + HP ++ I K
Sbjct: 168 RYQGQLIGVAASNLALDKLIKDVLAIEVPGKGYAILVNQKGKIVAHPTQDLILKPTEEMS 227
Query: 239 PELKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATD 298
+L ++ KD + G K+ + + T W++V + + P
Sbjct: 228 AQL-TISKLNIAAKDHSLFQLSMDGRDKVLMAEEVANTDWLLVMVMDKGVLEQP------ 280
Query: 299 TAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEY 358
+N M M+ I G +G ++++A+L + + L L + A +AEG +
Sbjct: 281 --LNDMLMVQI-GIGLGILLVMALLTSWF--VARQLNELGNIANALADIAEGD----GDL 331
Query: 359 LKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDI 418
+++ +DE+G L F +K ++RL + ++++
Sbjct: 332 TRRLDVRSQDEVGLLADKF--------------NKFVDRLHQ-------------MVKNV 364
Query: 419 IEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQ 478
E ++T+ + S + + + + + + V+ VTE + E A+
Sbjct: 365 REVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAENTAKNA 424
Query: 479 QETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMM 538
+++ DG + Q+ + + +E +GAV
Sbjct: 425 TQSVQLGEDGFAQMQQSKQSIDQLAQELTGAV---------------------------- 456
Query: 539 SRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIR 598
+S++ + I I + I IAEQTNLLALNAAIEAARAGE GRGFAVVA E+R
Sbjct: 457 ----RIISELEVHANEISTILSTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 512
Query: 599 KLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQ 658
L++ + + + I++ +I + T VSV+ ES + + ++ + LQ
Sbjct: 513 VLSQRTHASTEEIQT-------KIAGLQKVTTTAVSVMTESHKLVETSVADVNQTGASLQ 565
Query: 659 ETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRR 718
SE + + + + ++ ++ + E +++++ +Q + L
Sbjct: 566 AISEAIQQISDMATQIASAAEEQSLVTADINVNTESVREVSDQLAEEAQQSVQQAKSLHA 625
Query: 719 AAQELKDMVGRMR 731
AQEL + R +
Sbjct: 626 MAQELNKEISRFK 638
>pir||A72428 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4980507|gb|AAD35117.1|AE001690_11 (AE001690)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 656
Score = 177 bits (444), Expect = 4e-43
Identities = 119/406 (29%), Positives = 212/406 (51%), Gaps = 21/406 (5%)
Query: 342 YAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSK-DLVGTLNAISKKLERLAE 400
Y + LAEGR + + + G +I A VS +V + +K++R E
Sbjct: 264 YLDELLAEGRKATFGTIVTYVVF------GGVIFAVLFVSMMPVVKRMRQQVEKVKRFGE 317
Query: 401 GDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEA 460
GDL+ + + EL I E ++ + +E I S++E + +L + + +S++ +
Sbjct: 318 GDLTVEFEAKGKDELTQIEESLKEAVLSLKEMIVSIIEASKELSGASEEIKVLSEESHKM 377
Query: 461 INQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEG 520
++E +++ EA + E+T G+ VA +++ + ++ + V A EG
Sbjct: 378 SENLHEEAKKILDEANNMSSALTEVTSGVEEVAASAQNISKITQDLTERSEAVTKAAREG 437
Query: 521 SQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEA 580
+++ + I ++ R + + ++ + ++ I EI + I+SIAEQTNLLALNAAIEA
Sbjct: 438 TERVEAVGGVINKLKGSAERQRDYLRELVDSAKTIGEIVDTISSIAEQTNLLALNAAIEA 497
Query: 581 ARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKE------GVS 634
ARAGEAGRGFAVVA EIRKLAEES++A ++I ++ + I+ +KE ++
Sbjct: 498 ARAGEAGRGFAVVADEIRKLAEESQRATEDIAKMLSSLRATIEHVENGSKEMFEGVDEIA 557
Query: 635 VIGES-SETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAE 693
V+GE ++ R+ +G + I ++++ T+ T +EQ +E A++N+ E
Sbjct: 558 VMGEEVTKRFREILGRIEEINSMIENTA---ATAQEQGAAAEEMAS----AMDNVTKIVE 610
Query: 694 ETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
S + S IE QT + + AA+ L ++ ++ +V KFKV
Sbjct: 611 GVVESLNRMESLIEDQTESAARVSEAAERLSELSEQLSTLVQKFKV 656
>dbj|BAB07487.1| (AP001519) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 433
Score = 176 bits (441), Expect = 9e-43
Identities = 111/376 (29%), Positives = 194/376 (51%), Gaps = 19/376 (5%)
Query: 374 IQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESI 433
I + A S + L+A+ + + AEGD+ N + V + +IRS+ + E +
Sbjct: 66 ILGYVASSFFIAKPLSALERSARKAAEGDIHNDVAVSKSDD------EIRSLGLAYNEML 119
Query: 434 GSLVEMANDLE----------KRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETIN 483
SL M N++ K N AQ S D E Q+ + ++S A+ E++
Sbjct: 120 ASLRSMVNEINANFVETDAKVKEMNIAAQQSSDRAE---QIAVTMSEISKGAENSAESVQ 176
Query: 484 EITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEE 543
+ + M V Q +E+ ME+ + E+V E + D + I+ + + +
Sbjct: 177 QTAEAMDQVNQIAEQVQERMEKSRQSSNEMVKTLAESRKVIDSLVLGIKQLAEDNEKSLD 236
Query: 544 TVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEE 603
+V ++ E ++ ++EI +++ IAEQTNLLALNA+IEAARAGE G+GFAVVA E+RKLA+E
Sbjct: 237 SVGRLEEQAKEVDEIISLVGDIAEQTNLLALNASIEAARAGEHGKGFAVVADEVRKLADE 296
Query: 604 SKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSER 663
S +A I +++ I +E+K V V SE T + + T ++E +
Sbjct: 297 SGKAVQGISNLVRNIQEEVKHVVTQIGTQVEKAKTESEKGTATNRAIQEVETSVREVANV 356
Query: 664 MTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQEL 723
+ + E + + + + + + +AA AEET+A A++V++ +QQT A++E+ A L
Sbjct: 357 IEEISEMMKTQTKAIRETAKQTQEVAAIAEETSAGAQQVAAVTDQQTNAVQEMSTTANIL 416
Query: 724 KDMVGRMRQIVGKFKV 739
+++Q + KF +
Sbjct: 417 SKQAKKLKQTIEKFMI 432
>sp|P42259|HTR2_NATPH SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (METHYL-ACCEPTING
PHOTOTAXIS PROTEIN II) (MPP-II) >gi|1361920|pir||S55299
sensory rhodopsin II transducer protein -
Natronobacterium pharaonis >gi|510869|emb|CAA84468.1|
(Z35086) sensory rhodopsin II transducer [Natronomonas
pharaonis]
Length = 534
Score = 175 bits (438), Expect = 2e-42
Identities = 124/473 (26%), Positives = 218/473 (45%), Gaps = 50/473 (10%)
Query: 277 GWIVVATVPLSDITGPILSATDTAINK-MKMIVIQGFAVGFVIIVAILVVIYKIASNTLA 335
G I V + TG + + A++ + +I++ G +G V + +T A
Sbjct: 37 GAIAYGEVTAAAATGDAAAVQEAAVSAILGLIILLGINLGLVAAT--------LGGDTAA 88
Query: 336 PLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAF------------------ 377
L L A + +G L E ++ DEIG L AF
Sbjct: 89 SLSTLAAKASRMGDGDLDVELETRRE------DEIGDLYAAFDEMRQSVRTSLEDAKNAR 142
Query: 378 ----------EAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIE-DIRSVT 426
E ++ +L + ++R A+GD + L E E IE +
Sbjct: 143 EDAEQAQKRAEEINTELQAEAERFGEVMDRCADGDFTQRLDAETDNEAMQSIEGSFNEMM 202
Query: 427 ETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEIT 486
+ +G + A+ + + A A+ ++ V EA VN A+Q +S A Q ET+ +I
Sbjct: 203 DGIEALVGRIERFADAVSEDAEAVRANAESVMEASEDVNRAVQNISDAAGDQTETVQQIA 262
Query: 487 DGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVS 546
M V+ T+EE + ++ + + G + + A+ + +++ SR E+ V+
Sbjct: 263 LEMDDVSATTEEVAASADDIAKTARQAAETGEAGRETAETAITEMNEVE---SRTEQAVA 319
Query: 547 KVAEMS---RNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEE 603
+ E++ R I E++ +I IAEQTN+LALNA+IEAARA GFAVVA E++ LAEE
Sbjct: 320 SMEELNEDVREIGEVSEMIADIAEQTNILALNASIEAARADGNSEGFAVVADEVKALAEE 379
Query: 604 SKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSER 663
+K A + I +I + D + V+ +E + E ET+ DT+ L I ++ T++
Sbjct: 380 TKAATEEIDDLIGTVQDRTQTTVDDIRETSDQVSEGVETVEDTVDALERIVDSVERTNDG 439
Query: 664 MTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEEL 716
+ + + + KA +E++AA++E+T + AE + E Q +++E+
Sbjct: 440 IQEINQSTDAQADAAQKATTMVEDMAATSEQTASDAETAAETTETQAESVKEV 492
>gb|AAC27628.1| (AF076485) defective in fruiting DifA [Myxococcus xanthus]
Length = 413
Score = 173 bits (435), Expect = 5e-42
Identities = 98/358 (27%), Positives = 193/358 (53%), Gaps = 3/358 (0%)
Query: 385 VGTLNAISKKLERLAEGDLSNGLTVE---VRGELRDIIEDIRSVTETFRESIGSLVEMAN 441
V + +S+ +++GDLS + E R E+ ++ I + E RE +G + E A
Sbjct: 54 VTRVKVLSRSAYEISQGDLSKPVAAEGGSKRDEIDELTGAITRMQENLRELVGKIQETAK 113
Query: 442 DLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVR 501
+ A L + +++V + +V ++++++ A+ Q + +++ + + +A + + +
Sbjct: 114 SVADTAIDLQRSAENVNGSTEEVGSSMEKIAGGAESQSQLVSKASKVITEMAGSIQRTTA 173
Query: 502 AMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNV 561
+ E+ + E S A +GS+ A +++ + + + + V E ++ I +I +
Sbjct: 174 SAEDAARTTAETSSAAEDGSKAARLAGDKVKKVFNRIESASQQVFAFGEKTQEISKIVDA 233
Query: 562 ITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDE 621
IT +A+QTNLLALNA IEAARAGE GRGFAVVA E+RKLAE + ++A+ I + I+ +
Sbjct: 234 ITQVAQQTNLLALNATIEAARAGEYGRGFAVVADEVRKLAESAGRSAEQISKLARDISGQ 293
Query: 622 IKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKA 681
V A KEG++ + E E L + + + I +++ SE++ + E + ++
Sbjct: 294 STSVVSAMKEGIAELAEGREDLTNIVRSMGAITDTIRKGSEKVHLISESAREQLKGSEEM 353
Query: 682 LRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+ A+E + A +S E + + I++QTAA+ + A EL ++ ++ +V F++
Sbjct: 354 VTAIEEIKLVARNNASSTEAIQAVIQEQTAAVSRMTSLASELTNLSVELQSVVRSFRL 411
>gb|AAG34158.1|AF312879_1 (AF312879) methyl-accepting chemotaxis protein McpX [Sinorhizobium
meliloti]
Length = 788
Score = 171 bits (430), Expect = 2e-41
Identities = 160/618 (25%), Positives = 265/618 (41%), Gaps = 79/618 (12%)
Query: 146 WYVQAKEKGGAIITEPYRDAATG--QWVITYAVPVYVNGQFKGVIGLDVFVSTLLNETKK 203
WY A + G IT+PY T + + A PV NG+ GV G+D+ ++ L +
Sbjct: 161 WYGLAAKSGKGAITQPYLAEGTDVPTTMTSIAYPVMSNGRMIGVSGVDISLAALADRLSA 220
Query: 204 IKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPELKDLADELKKGKDEGYVLYTFQG 263
+K +G + ++ Q+G L P E + K + EL + D L G T+ G
Sbjct: 221 VKPFGSGRVYLLSQSGKWLAAPIPELLMKEYDGEGAEL--VKDALSTGTPRMIENLTYDG 278
Query: 264 IKKIGGYKRLK--------TTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVG 315
+ + R+ W+V+ VP S I P+ T ++I G G
Sbjct: 279 NEP---FDRVVYPFSLPDVNAQWLVLVDVPRSAINAPVRDQT--------YMMIVG---G 324
Query: 316 FVIIVAILVVIY-KIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLER-DEIGAL 373
V++ A+L +Y + PL + L+ G EY + I ER DE GA+
Sbjct: 325 LVVLGAVLAGLYFAVRRFVQKPLAGRVGDVETLSNG------EYTRPISGQERSDETGAV 378
Query: 374 IQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESI 433
++ E L S+ + +L G + R E + DI +++
Sbjct: 379 ARSLEGFRHQLADNRRLESEARHEREQAELERGRSENERTEASALQRDI---VARLGKAL 435
Query: 434 GSLVEMANDLEKRANA-----LAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDG 488
L A DL R AQ+ +D + + E I+ V+ +EI+
Sbjct: 436 SHL--SAGDLAFRLTGDFPGEYAQLKRDFNATMESLEETIRTVNHSVVNIGSGTSEISGA 493
Query: 489 MRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSK- 547
++ +E+ ++EE + A+ E+ S N ++ A K +E + E V K
Sbjct: 494 ANDLSHRTEQQAASLEETAAALDELTSQVNASAENAKVAAKSVEVASSDAEQSGEVVQKA 553
Query: 548 ------VAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLA 601
+ + S + I VI IA QTNLLALNA +EAARAG+AG+GFAVVAQE+R+LA
Sbjct: 554 IAAMQGIEQSSHEVSRIIGVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEVRELA 613
Query: 602 EESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETS 661
+ S AA IK++I+ ++ +EGV ++G++ G L IA
Sbjct: 614 QRSANAAKEIKTLINTSAGQV-------REGVDLVGKAG-------GALEKIA------- 652
Query: 662 ERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQ 721
EQ+V+ + + + A +E ++ ++ +Q A +EE A+
Sbjct: 653 -------EQVVQINGLIRQISSSASEQAVGLKEINSAVNQMDQVTQQNAAMVEETTAASM 705
Query: 722 ELKDMVGRMRQIVGKFKV 739
L D + +V +F++
Sbjct: 706 ALNDEARALSALVARFQI 723
>dbj|BAB04595.1| (AP001510) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 560
Score = 170 bits (427), Expect = 4e-41
Identities = 115/385 (29%), Positives = 202/385 (51%), Gaps = 34/385 (8%)
Query: 372 ALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRE 431
A++ AF SK + L ++K +A+GDL+ T V+ + RD I + E +E
Sbjct: 193 AIVLAF-ITSKMITKPLARLTKVARHVADGDLT---TERVKIKNRDEIGQLNESFEAMKE 248
Query: 432 SIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRL 491
++ L++ + Q + V + Q++ + +Q S ++ I I+ G +
Sbjct: 249 NLRGLIQR----------ILQNADQVAVSSEQLSASAEQTSSATEQTTSAIESISRGADM 298
Query: 492 VAQTSEESVRAMEEFSGAVTEV--------------VSIANEGSQKGDEALKRIEDIQHM 537
++ SV+ +EE + VTE+ ++ ANEG E ++ ++ I
Sbjct: 299 QTSAAQTSVKTLEEMNQIVTEMTDGAKQIESNANLTLTYANEGDTLVKETVENMQSIDES 358
Query: 538 MSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEI 597
+ ++ + +++ S +I EI +VI SIAEQTNLLALNAAIEAARAGE G+GFAVVA+E+
Sbjct: 359 VKGSDQAIQTLSKRSEDIVEILDVIQSIAEQTNLLALNAAIEAARAGEHGKGFAVVAEEV 418
Query: 598 RKLAEESKQAADNIKSIIDKITDEIKEAVE---ATKEGVSVIGESSETLRDTIGYLANIA 654
RKLAEES Q+ I +ID++ E +VE KE VSV +T T +I
Sbjct: 419 RKLAEESSQSTKKIHDLIDEMVKETNNSVEKMGLVKEEVSV---GLKTAAQTSEKFHSIV 475
Query: 655 TLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIE 714
+Q + ++ + E+ + +++N+A+ AEE+ + VS+ E+ A+++
Sbjct: 476 ASIQGVTSQVEAMNRVTREVAEKSTEVATSVQNMASVAEESAEQSSSVSAVAEETLASMQ 535
Query: 715 ELRRAAQELKDMVGRMRQIVGKFKV 739
E+ +A +L +M +++ + +FK+
Sbjct: 536 EVTASANQLTEMAETLQEAIKQFKL 560
>pir||C72291 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981690|gb|AAD36219.1|AE001771_12 (AE001771)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 530
Score = 170 bits (426), Expect = 5e-41
Identities = 107/346 (30%), Positives = 195/346 (55%), Gaps = 15/346 (4%)
Query: 404 SNGLTV---EVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEA 460
+N LT+ E +G+ ++I ++ F+ SI L D++ ++A+ +++++A
Sbjct: 190 NNDLTINIQEAKGK-----DEISTLLNEFKASIEYLRNNLKDVQTETFSVAESIEEISKA 244
Query: 461 INQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEG 520
++ + +S E I I+ ++ SEE A + + + + S A++
Sbjct: 245 NEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEISSATKNIADSAQQAASFADQS 304
Query: 521 SQKGDEA---LKRIEDIQHMMSRIEETVSKVAE-MSRNIEEITN---VITSIAEQTNLLA 573
+Q EA LK++ ++ M+S + V +V E + EEIT+ I +IAEQTNLLA
Sbjct: 305 TQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGAEEITSFVETINAIAEQTNLLA 364
Query: 574 LNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGV 633
LNAAIEAARAGEAGRGFAVVA EIRKLAEES+QA++N++ ++++I ++A + + E
Sbjct: 365 LNAAIEAARAGEAGRGFAVVADEIRKLAEESQQASENVRRVVNEIRSIAEDAGKVSSEIT 424
Query: 634 SVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAE 693
+ + E ++ + L +I ++ +E + + I VD+ A+ A +AE
Sbjct: 425 ARVEEGTKLADEADEKLNSIVGAVERINEMLQNIAAAIEEQTAAVDEITTAMTENAKNAE 484
Query: 694 ETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
E T S +EV++ +++ +A+ EE+ Q +++ V +++IV ++K+
Sbjct: 485 EITNSVKEVNARLQEISASTEEVTSRVQTIRENVQMLKEIVARYKI 530
>pir||E82481 methyl-accepting chemotaxis protein VCA0268 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657665|gb|AAF96179.1| (AE004366) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 643
Score = 170 bits (426), Expect = 5e-41
Identities = 146/601 (24%), Positives = 271/601 (44%), Gaps = 106/601 (17%)
Query: 144 RPWYVQAKEKGGAIITEPYRDAATGQWVITYAVPVYVNGQFKGVIGLDVFVSTLLNETKK 203
R WY QAK + +TE Y+D TG+ VI+ P+ GQF G + D + ++ +
Sbjct: 134 RDWYQQAKSRRSPFLTEIYQDQVTGKKVISAVSPILHQGQFVGALLGDFQLDDIITQVSN 193
Query: 204 IKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPELKDLADELKKGKDEGYVLYTFQG 263
++ G + D+N + + I + P +++ + ++ G++ + + G
Sbjct: 194 MRFA-GGAATLTDKNAVFFASDDPNDIGRTPSQVSPSFREMEAGFHR-QESGHLSFPYLG 251
Query: 264 IKKIGGYKRLKTTG---WIVVATV----PLSDITGPILSATDTAINKMKMIVIQGFAVGF 316
I+ G YKR+ T W ++ V L+D+ + +A T IV+ G +VG
Sbjct: 252 IEFDGYYKRVNLTDDMYWTLMVFVDKATALADVDVAVANAITTG------IVLIGISVG- 304
Query: 317 VIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQA 376
+I+ I+ IYK PL +LK A LA+G + +++ D++ + +
Sbjct: 305 -VIIFIINQIYK-------PLLRLKVAVLDLAQGS----GDLTRRLEVNGNDDLAQISEG 352
Query: 377 FEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSL 436
F S G+L N + +++ + I I +++T +E+ L
Sbjct: 353 FNRFS-------------------GNLQN-MMLQISDATQIISSSIEQLSQTAKENEQML 392
Query: 437 VEMANDLEKRANALAQVS---KDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVA 493
+ +++ ++ A+ Q+S + V E++ Q N+ + S EAQ+ +N
Sbjct: 393 ISHSSETDQVVTAITQMSESARTVAESVTQSNQITEAASKEAQQSLVIVN---------- 442
Query: 494 QTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSR 553
AV+ V S+ N D+++M E++S + +
Sbjct: 443 --------------NAVSTVTSLVN--------------DVENM----SESISNMNRDAN 470
Query: 554 NIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKS 613
I E+ +VI +I+EQTNLLALNAAIEAARAGE GRGFAVVA E+R LA ++ + I
Sbjct: 471 KISEVLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISD 530
Query: 614 IIDKI---TDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQ 670
++ K+ TD + A+E TK+ + + + ++ ++ + + + S ++ EQ
Sbjct: 531 MLTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQ 590
Query: 671 IVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRM 730
E+ + + ++ + E + + Q A E L + EL+ +VG+
Sbjct: 591 QSTVAAELSRNMLSIREI----------VESLVVSGRQTVGATESLSHSNHELEQLVGKF 640
Query: 731 R 731
+
Sbjct: 641 K 641
>pir||F72288 methyl-accepting chemotaxis protein - Thermotoga maritima (strain
MSB8) >gi|4981694|gb|AAD36222.1|AE001772_1 (AE001772)
methyl-accepting chemotaxis protein [Thermotoga
maritima]
Length = 539
Score = 169 bits (425), Expect = 7e-41
Identities = 112/360 (31%), Positives = 195/360 (54%), Gaps = 21/360 (5%)
Query: 393 KKLERLAEGDLSNG-LTVEV-----RGELRDIIEDIRSVTETFRESIGSLVEMANDLEKR 446
KKL L E +LS+G L VE+ + E+ + + E + I + + ++++
Sbjct: 188 KKLAVLVE-NLSHGVLNVEIEKIRSKDEIGKAAMAVEKLREILLDIITGINKASSEVSSS 246
Query: 447 ANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEF 506
+ L+ S++++ +N ++EA+ ++ EA T+ E T + ++ T++ + ++ +
Sbjct: 247 SEELSATSEELSANVNSISEALVSLNKEADENSATLEEFTASIEELSSTADSNSKSAQ-- 304
Query: 507 SGAVTEVVSIANEGSQKGDEALKRIEDIQH----MMSRIEETVSKVAEMSRNIEEITNVI 562
A+ E +E +K E ++ I + H M ++ ++++ M+ NI I + I
Sbjct: 305 --AMLESTQRVHEQVEKSTERIREITEKAHSTREMSENTKQALNRLLSMAENINSIVDTI 362
Query: 563 TSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEI 622
SIAEQTNLLALNAAIEAARAGEAGRGFAVVA EIRKLAEESK A I I+ K+ DEI
Sbjct: 363 NSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESKAATQQIGEILGKLRDEI 422
Query: 623 KEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTV---KEQIVRTQEEVD 679
+ + + S I E++ + +I +++ R+ +V ++ + EE+
Sbjct: 423 NNSSKIVESTASAIEETASLVESIKDVFESIRIAMEDVQSRVESVAASTQEQSASLEELS 482
Query: 680 KALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+ L L E T+SA +SA+++ AA+EEL +AQ L ++ +++ + FK+
Sbjct: 483 AGVTRLTELLNKTRENTSSA---NSALQEANAALEELSASAQSLAELAQELQRRIEFFKI 539
>pir||E82314 methyl-accepting chemotaxis protein VC0514 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9654941|gb|AAF93684.1| (AE004137) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 626
Score = 169 bits (424), Expect = 9e-41
Identities = 175/739 (23%), Positives = 303/739 (40%), Gaps = 135/739 (18%)
Query: 3 FRKKIILMAIMSAVITMAIFGGVTIYSFNKVYGVIKGEIQAPAIEQGGQLAMSAAE--VA 60
F KK+I ++ ++T+A + + Y K E+ IE G ++ E V+
Sbjct: 5 FVKKLIFISSFILLVTVA-------FVVWEGYTTAKKEVSV-VIEDGINEIINKTERFVS 56
Query: 61 EKMFDDFFARVADYGTMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVYF 120
K+ D + +++ + E Y + + + FL + F
Sbjct: 57 LKLESDISLASSIVDSISLRISDEQYINDIINGNAIKKAFLSTGFGF------------- 103
Query: 121 GDEEGHMYMYPPDELPEG-YDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVITYAVPVY 179
D G + P+ PE YDPR R WY +AK+ ITEPY D ++++ + PV
Sbjct: 104 -DSNGKVIENDPNWEPEDDYDPRSRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPVA 162
Query: 180 -VNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQV 238
F G + DV +S + I L + GY+ I G ++H N + + K
Sbjct: 163 DTMNNFIGAMYFDVDLSRIQKNVDDINLFEAGYVFITSNTGKVIIHSNTDELGK------ 216
Query: 239 PELKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATD 298
+KD+ + + D+G V+ + G+ K + W ++A + S
Sbjct: 217 -NVKDIYNGFRL--DKGKVVLSVNGVNKWLYTSPILGGDWFIIAVIDES--------IAM 265
Query: 299 TAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEY 358
+INKMK +I A+G V
Sbjct: 266 QSINKMKYELIFYSAIGLVF---------------------------------------- 285
Query: 359 LKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEG--DLSNGLTVEVRGELR 416
G LI F + + L+ L + ++ +A G DL+ L + E
Sbjct: 286 ------------GGLILVF--ILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFS 331
Query: 417 DIIEDIRSVTETFRESIGSLVEMANDL----EKRANALAQVSKDVTEAINQVNEAIQQVS 472
++ S TE I L +A+ + EK AN A+VS+ V E
Sbjct: 332 ELALGFNSFTEMLGSQIRQLKTIASGVLDGAEKTANE-AEVSRLVVE------------- 377
Query: 473 IEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIE 532
+Q + + ++ M +A T+ E + + + A E S + EGS E I+
Sbjct: 378 ----QQLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGESASLEGSSVVHETTDAIQ 433
Query: 533 DIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAV 592
+ + E V ++ + + IE + +VI IA+QTNLLALNAAIEAARAGE+GRGFAV
Sbjct: 434 RLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAV 493
Query: 593 VAQEIRKLAEESKQAADNIKSIIDKITD---EIKEAVEATKEGVSVIGESSETLRDTIGY 649
VA E+R LA+ ++Q+ I II+++ + + +++ +K ++ E + + + I
Sbjct: 494 VADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKI-- 551
Query: 650 LANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSS----A 705
+L+Q+ R++ + QI EE + N + ++ + E +S
Sbjct: 552 -----SLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLSIKLSEAASNAGTE 606
Query: 706 IEQQTAAIEELRRAAQELK 724
+ Q + ++E E K
Sbjct: 607 MNAQVSKVKEQNELLNEFK 625
>pir||T44989 transducer protein trII [imported] - Haloarcula vallismortis
>gi|5921503|emb|CAB56464.1| (AJ249640) trII protein
[Haloarcula vallismortis]
Length = 773
Score = 168 bits (422), Expect = 2e-40
Identities = 147/627 (23%), Positives = 281/627 (44%), Gaps = 74/627 (11%)
Query: 158 ITEPYRDAATGQWVITYAVPVYVNGQFKGVIGLDVFVSTLLNETKKIKLGKTG-YIAIID 216
+TEP+ + ++ PV G + V++ L + +I + G + +++
Sbjct: 159 VTEPFSVSVVDHPIVAVVSPV--PGDEDRAL---VYMIDLREKADQISSHREGSFTTVVN 213
Query: 217 QNGMTLVHPNEEFINKLNIFQVPELKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTT 276
+G + HPN I E D L+ G+ + + + G RL++
Sbjct: 214 TDGEFVSHPNHSMIGSTAPISQME-SDPLGTLEPGQRMFH-----ETDSMLMGLTRLESH 267
Query: 277 GWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAP 336
W+V+ + S + A I + + +V + ++ I NT+A
Sbjct: 268 DWVVM-----------VHSDREAAYALSDQINSDLIGLILLAVVNLGLIGVTIGGNTIAS 316
Query: 337 LEKLKYAAQALAEGRL------------------------------------KQVSEYLK 360
L +L A+A+A+G L KQ +E K
Sbjct: 317 LRRLSVKAEAMADGELDVDLDTSREDEFGTLYAAFDNMRANLRTQISEAETAKQEAEAAK 376
Query: 361 QIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGL-TVEVRGELRDII 419
+ R+++ + EA++ L S L+ A GDL+ + T + + ++
Sbjct: 377 EQAQAAREDVESERNEMEALTGHLELKAQQYSDALDAAANGDLTARVKTDSMNDAMAEVG 436
Query: 420 EDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQ 479
EDI + + ++I + A ++ + ++ + ++ V A QV+++I ++ Q
Sbjct: 437 EDINTTLDALEDTIADMKAFATNVIQSSDRVNSNAERVDRASKQVSKSINEIFEGTTEQN 496
Query: 480 ETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMS 539
E + M+ ++ T+++ + ++ + + +G + EA+ + I+
Sbjct: 497 EGLESAAAEMQNLSATAQQVASSAQQVADTSQSAAKVGEDGREAAQEAIAEMSAIEAETG 556
Query: 540 RIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRK 599
E ++ + + I EI VITSI EQTN+LALNA+IEAA A G GFAVVA EI+
Sbjct: 557 ETVEEINALDDELDEIGEIVGVITSIVEQTNMLALNASIEAAHADGDGEGFAVVADEIKG 616
Query: 600 LAEESKQAADNIKSIIDKITDEIKEAVEATK-------EGVSVIGESSETLRDTIGYLAN 652
LAEE+K+AA +I+ I+ I ++ + VE + EGVS + E+ + L + Y
Sbjct: 617 LAEETKEAAADIEGRIEAIQEQAGDTVETMESTSTRITEGVSTVEETVDALETIVEYTEE 676
Query: 653 IATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAA 712
+ T +QE +R T E+ RT ++V + +++L +++T A+ V+ A + Q+A+
Sbjct: 677 VDTGIQEI-DRAT---EEQARTAQDV---MGTIDDLTTISQQTATEADTVAGAAQDQSAS 729
Query: 713 IEELRRAAQELKDMVGRMRQIVGKFKV 739
IEE+ +A EL+ + ++ +F V
Sbjct: 730 IEEVSDSATELRQRADDLESLLDRFTV 756
>pir||H81431 methyl-accepting chemotaxis signal transduction protein Cj0144
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6967638|emb|CAB72628.1| (AL139074) methyl-accepting
chemotaxis signal transduction protein [Campylobacter
jejuni]
Length = 659
Score = 168 bits (420), Expect = 3e-40
Identities = 174/693 (25%), Positives = 317/693 (45%), Gaps = 95/693 (13%)
Query: 6 KIILMAIMSAVITMAIFGGVTIYSFNKV--YGVIKGEIQAPAIEQGGQLAMSAAEVAEKM 63
K+ L+A + AV+ + I G VT + + V+ EI + + A+
Sbjct: 7 KVSLIANLIAVVCLIILGVVTFIFVKQAIFHEVVNAEI-------------NYVKTAKNS 53
Query: 64 FDDFFARVA-DYGTMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVYFGD 122
+ F AR + ++A ++K + LDS + A+ ++ + K ++ + ++ VY
Sbjct: 54 IESFKARNSLALESLAKSILKHPIEQ-LDSQD-ALMHYVGKDLKNFRDAGRFLA-VYIAQ 110
Query: 123 EEGHMYMYPPDE-----------LPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQWV 171
G + + PD + YD R R +Y++A + IT Y D T
Sbjct: 111 PNGELVVSDPDSDAKNLDFGTYGKADNYDARTREYYIEAVKTNKLYITPSYIDVTTNLPC 170
Query: 172 ITYAVPVYVNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFIN 231
TY++P+Y +G+F GV+ +D+ + L E + + G + D+ V ++ +
Sbjct: 171 FTYSIPLYKDGKFIGVLAVDILAADLQAEFENLP----GRTFVFDEENKVFVSTDKALLQ 226
Query: 232 KLNIFQVPELKDLADELKKGKDEGYVLYTFQGIKKIGGYKRL----KTTGWIVVATV--P 285
K + + + +LA K K++ L F+ + G +R K +G I A V P
Sbjct: 227 KG--YDISAIANLA----KTKED---LEPFEYTRPKDGNERFAVCTKVSG-IYTACVGEP 276
Query: 286 LSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQ 345
+ I P+ K+ IQ V F I+++ +++Y I S L+PL ++
Sbjct: 277 IEQIEAPVY----------KIAFIQTAIVIFTSIISV-ILLYFIVSKYLSPLAAIQTGLT 325
Query: 346 ALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSN 405
+ + + ++ + I DE G Q A++++++ T + + + + E +
Sbjct: 326 SFFDF-INYKTKNVSTIEVKSNDEFG---QISNAINENILATKRGLEQDNQAVKESVQT- 380
Query: 406 GLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANAL-AQVSKDVTEAINQV 464
++V G L I T L+E+ N L K + L A+V D+ AI+++
Sbjct: 381 -VSVVEGGNLTARI--------TANPRNPQLIELKNVLNKLLDVLQARVGSDMN-AIHKI 430
Query: 465 NEAIQQVSIEAQRQQE------TINEITDGMRLVAQTSEESVRAMEEFSG----AVTEVV 514
E + + + + T N + D + + + S + A+ SG AV +
Sbjct: 431 FEEYKSLDFRNKLENASGSVELTTNALGDEIVKMLKQSSDFANALANESGKLQTAVQSLT 490
Query: 515 SIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLAL 574
+ +N +Q +E +E+I M + S V S I+ +T +I IA+Q NLLAL
Sbjct: 491 TSSNSQAQSLEETAAALEEITSSMQNVSVKTSDVITQSEEIKNVTGIIGDIADQINLLAL 550
Query: 575 NAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKE--- 631
NAAIEAARAGE GRGFAVVA E+RKLAE ++++ I++ + + I + E+ KE
Sbjct: 551 NAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANTNLLVQSINDMAESIKEQTA 610
Query: 632 GVSVIGES----SETLRDTIGYLANIATLLQET 660
G++ I +S +T +D + +AN + ++ T
Sbjct: 611 GITQINDSVAQIDQTTKDNV-EIANESAIISST 642
>gb|AAG20060.1| (AE005085) Htr3 transducer; Htr3 [Halobacterium sp. NRC-1]
Length = 633
Score = 166 bits (417), Expect = 6e-40
Identities = 93/363 (25%), Positives = 195/363 (53%), Gaps = 1/363 (0%)
Query: 376 AFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGE-LRDIIEDIRSVTETFRESIG 434
A E +++ L S ++ A GDL+ L +V E ++DI E + ++
Sbjct: 259 ASERLNERLERRAAEYSDEMAAAAAGDLTRRLDEDVDSEPMQDIAEAFNDMMGDVEATLA 318
Query: 435 SLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQ 494
+ +A+ ++ + ++ + ++ A +QV+E++Q +S +A +Q++ + + D + ++
Sbjct: 319 QVRSIADAVDAASTDVSTSAAEIRSASDQVSESVQDISADADQQRDRLGTVGDEVTSLSA 378
Query: 495 TSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRN 554
T EE + ++ + V + + + G + G++A+ +E I+ E V+ + E
Sbjct: 379 TVEEIAASADDVAETVNQAATESERGQELGEDAVAELERIEATADSAVERVTALEEAVDA 438
Query: 555 IEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSI 614
I ++T VIT IAEQTN+LALNA IEAARA ++G GFAVVA E++ LA+E K++A I+++
Sbjct: 439 IGDVTGVITDIAEQTNMLALNANIEAARADKSGDGFAVVADEVKDLADEVKESATEIETL 498
Query: 615 IDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRT 674
+D + ++ + V E + SET+ + L +I ++ + + ++ +
Sbjct: 499 VDDVQADVADTVADMSELGDRVDAGSETIEAALAALDDIGDQVEAANGSVQSISDATDEQ 558
Query: 675 QEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIV 734
++ + ++ + ++ T +++VS+A E+Q A++ E+ A +L D V + ++
Sbjct: 559 AASTEEVVTMIDEVTDLSDRTATESQQVSAAAEEQAASVSEVAGRADDLDDQVSTLNDLL 618
Query: 735 GKF 737
+F
Sbjct: 619 DQF 621
>pir||T48840 transducer protein basT [validated] - Halobacterium salinarum
>gi|7327959|emb|CAB82572.1| (AJ245950) chemotaxis
transducer protein BasT [Halobacterium salinarum]
Length = 805
Score = 166 bits (417), Expect = 6e-40
Identities = 93/363 (25%), Positives = 195/363 (53%), Gaps = 1/363 (0%)
Query: 376 AFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGE-LRDIIEDIRSVTETFRESIG 434
A E +++ L S ++ A GDL+ L +V E ++DI E + ++
Sbjct: 431 ASERLNERLERRAAEYSDEMAAAAAGDLTRRLDEDVDSEPMQDIAEAFNDMMGDVEATLA 490
Query: 435 SLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQ 494
+ +A+ ++ + ++ + ++ A +QV+E++Q +S +A +Q++ + + D + ++
Sbjct: 491 QVRSIADAVDAASTDVSTSAAEIRSASDQVSESVQDISADADQQRDRLGTVGDEVTSLSA 550
Query: 495 TSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRN 554
T EE + ++ + V + + + G + G++A+ +E I+ E V+ + E
Sbjct: 551 TVEEIAASADDVAETVNQAATESERGQELGEDAVAELERIEATADSAVERVTALEEAVDA 610
Query: 555 IEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSI 614
I ++T VIT IAEQTN+LALNA IEAARA ++G GFAVVA E++ LA+E K++A I+++
Sbjct: 611 IGDVTGVITDIAEQTNMLALNANIEAARADKSGDGFAVVADEVKDLADEVKESATEIETL 670
Query: 615 IDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRT 674
+D + ++ + V E + SET+ + L +I ++ + + ++ +
Sbjct: 671 VDDVQADVADTVADMSELGDRVDAGSETIEAALAALDDIGDQVEAANGSVQSISDATDEQ 730
Query: 675 QEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIV 734
++ + ++ + ++ T +++VS+A E+Q A++ E+ A +L D V + ++
Sbjct: 731 AASTEEVVTMIDEVTDLSDRTATESQQVSAAAEEQAASVSEVAGRADDLDDQVSTLNDLL 790
Query: 735 GKF 737
+F
Sbjct: 791 DQF 793
>gb|AAB69316.1| (AF012922) methyl-accepting chemotaxis protein [Treponema
denticola]
Length = 729
Score = 165 bits (413), Expect = 2e-39
Identities = 164/670 (24%), Positives = 283/670 (41%), Gaps = 103/670 (15%)
Query: 105 FKKIKELNKDVSYVYFGDEEGHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRD 164
F ++ + ++ +Y G G +E +G+DPR RPWY A G +I P
Sbjct: 128 FVRMDKNYEEFKEIYMGTRWGGFVSSLSEEDEQGFDPRTRPWYKAAAAANGEVIITPVYI 187
Query: 165 AAT---GQWVITYAVPVY-VNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGM 220
+ G V+ A + G F G IGLD+ ++ L + I++GKTGY ++ QN
Sbjct: 188 STISTGGSPVVALAQAIKDPEGAFLGCIGLDLNLTDLASRVSSIRIGKTGYCMLM-QNDG 246
Query: 221 TLVHPNEEFINKLNIFQ---VPELKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTG 277
++ + + L I + +P ++ D++K EG G L
Sbjct: 247 LILADPKHADSNLKILKETGIPAFNEI-DKMK----EGSAFIMLDGKTWKVSVFSLPEVN 301
Query: 278 WIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPL 337
W V + ++I LS T + M ++I + V+Y
Sbjct: 302 WKVALFIEQNEI----LSLFYTLLKNM------------ILIGLFMFVLY---------- 335
Query: 338 EKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLER 397
+ + G LK RY +R EI +
Sbjct: 336 ----FTLAFIFAGALK---------RYFKRLEI-----------------------VFGK 359
Query: 398 LAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDV 457
+A GDL++ L V+ E+ I+ ++ + E I L + A+ + + L+ ++
Sbjct: 360 IASGDLTDRLAVKKNNEVGRIMMNLNTAIENNHTMICLLKDEADKMNSIGSQLSSSMEET 419
Query: 458 TEAINQVNEAIQQVSIEAQRQQE-------TINEITDGMRLVAQTSEESVRAMEEFSGAV 510
AI Q+ E ++ V +A Q T+ +I + + + E ++ E S +
Sbjct: 420 AAAIKQIGENVKGVKEKAMSQAAGVTETVATVEQINGRLSRLVSSIEMQTESINESSVVI 479
Query: 511 TEVVSIANEGSQKGDEALKRIEDIQHMMS-------RIEETVSKVAEMSRNIEEITNVIT 563
T + + ++ D+ + I+ + E V ++AE S ++ E + +I
Sbjct: 480 TRMAENTVKIAKTLDQNNELIKTVYGQTKVGKDGARTANEIVKQIAEKSASLLEASQIIQ 539
Query: 564 SIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIK 623
+IA QTNLLA+NAAIEAA AGE+G+GFAVVA EIRKLAE S I ++I + T+ I
Sbjct: 540 NIASQTNLLAMNAAIEAAHAGESGKGFAVVADEIRKLAEGSNLQGKQIAAVIKETTEIIH 599
Query: 624 EAVEATKEG----------VSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVR 673
+ EA VS I E +++ + + + + +R+ V +I
Sbjct: 600 DITEAGSRAEKTFIDVYNLVSQISEKEDSILEVMREQEENGKHVLDAIKRINDVTSEIDS 659
Query: 674 TQEEV----DKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGR 729
E+ ++ + ++ LA ETT S E++S +Q T A++E+ Q+ K +
Sbjct: 660 ASAEMLEGGNQIGQEMQKLAEITLETTDSMNEIASGADQITIAVKEVSDITQKNKASIEN 719
Query: 730 MRQIVGKFKV 739
+ V KFKV
Sbjct: 720 LSNEVSKFKV 729
>sp|Q48318|HTR5_HALSA HALOBACTERIAL TRANSDUCER PROTEIN V >gi|11277601|pir||T46811
halobacterial transducer protein V [imported] -
Halobacterium salinarum >gi|1435132|emb|CAA64842.1|
(X95589) halobacterial transducer protein V
[Halobacterium salinarum] >gi|10581214|gb|AAG19985.1|
(AE005080) Htr7 transducer; Htr7 [Halobacterium sp.
NRC-1]
Length = 545
Score = 165 bits (413), Expect = 2e-39
Identities = 110/469 (23%), Positives = 227/469 (47%), Gaps = 23/469 (4%)
Query: 281 VATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAIL----VVIYKIASNTLAP 336
VAT + TGP+++ T + FA+G +AI+ ++ + A
Sbjct: 69 VATQIFNLATGPLMATT-----------VAVFAIGGTATLAIVEDMEALVEERAQRRQEA 117
Query: 337 LEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQA--FEAVSKDLVGTLNAISKK 394
E+ A +A + KQ +E +Q E + A ++ E ++ DL +
Sbjct: 118 EEERAEAERAREKAEQKQ-AEAERQTAEAESAKQDARERSAEIEQLAADLESQATEVGAT 176
Query: 395 LERLAEGDLSNGLTVEV-RGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQV 453
LE ++GDL+ + E+ ++ + + T +I + + ++ +
Sbjct: 177 LEAASDGDLTARVDATTDNAEIAEVATVVNDMLTTMERTIDEIQGFSTNVTTASREATAG 236
Query: 454 SKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEV 513
+K++ +A V+E++Q+++ Q+E + + + M + T EE + + +
Sbjct: 237 AKEIQDASQTVSESVQEIAAGTDDQREQLESVAEEMDSYSATVEEVAATAQSVADTAADT 296
Query: 514 VSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLA 573
+A G Q ++A+ I+ +Q M V + +++ I++I +I+ IAEQTN+LA
Sbjct: 297 TDVATAGKQTAEDAIDAIDAVQETMQTTVANVDALEDLTTEIDDIAELISDIAEQTNMLA 356
Query: 574 LNAAIEAARAGEA----GRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEAT 629
LNA IEAARAG G GFAVVA E+++LA ES+++A +I +I+++ + VE
Sbjct: 357 LNANIEAARAGSGGGSNGDGFAVVADEVKELATESQRSAKDIAELIEEVQSQTATTVEEI 416
Query: 630 KEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLA 689
+ + + + + +T+ + +QET++ + + + + + ++ + +++++A
Sbjct: 417 RVAEQRVNDGAAAVEETVDAFGAVTENIQETTDGVQEISQAMDEQAQRSERVVSSVDDIA 476
Query: 690 ASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFK 738
++ T AE VS+A E+QTA+I E+ + Q L + + +F+
Sbjct: 477 TISQATADRAENVSAASEEQTASITEVTSSLQSLAAQADTLEDRLNEFR 525
>pir||T44938 transducer protein htpV [similarity] - Halobacterium salinarum
>gi|1621047|gb|AAB17519.1| (U53365) transducer HtI
protein [Halobacterium salinarum]
Length = 544
Score = 163 bits (409), Expect = 5e-39
Identities = 105/467 (22%), Positives = 220/467 (46%), Gaps = 20/467 (4%)
Query: 281 VATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKL 340
VAT + TGP+++ T + FA+G +AI+ + + P ++
Sbjct: 69 VATQIFNLATGPLMATT-----------VAVFAIGGTATLAIVEDMEALVEERAQPRQEA 117
Query: 341 KY----AAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLE 396
+ A +A + KQ + + + E ++ DL + LE
Sbjct: 118 EEERAEAERAREKAEQKQAEAERQTAEAQSQTGRTGTQREIEQLAADLESQATEVGATLE 177
Query: 397 RLAEGDLSNGLTVEV-RGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSK 455
++GDL+ + E+ ++ + + T +I + + ++ + +K
Sbjct: 178 AASDGDLTARVDATTDNAEIAEVATVVNDMLTTMERTIDEIQGFSTNVTTASREATGGAK 237
Query: 456 DVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVS 515
++ A V+E++Q+++ Q+E + + + M + T EE + + +
Sbjct: 238 EIQVASQTVSESVQEIAAGTDDQREQLESVAEEMDSYSATVEEVAATAQSVADTAADTTD 297
Query: 516 IANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALN 575
+A G Q ++A+ I+ +Q M V + +++ I++I +I+ IAEQTN+LALN
Sbjct: 298 VATAGKQTAEDAIDAIDAVQETMQTTVANVDALEDLTTEIDDIAELISDIAEQTNMLALN 357
Query: 576 AAIEAARAGEA----GRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKE 631
A IEAARAG G GFAVVA E+++LA ES+++A +I +I+++ + VE +
Sbjct: 358 ANIEAARAGSGGGTNGDGFAVVADEVKELATESQRSAKDIAELIEEVQSQTATTVEEIRV 417
Query: 632 GVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAAS 691
+ + + + +T+ + +QET++ + + + + + ++ + +++++A
Sbjct: 418 AEQRVNDGAAAVEETVDAFGAVTENIQETTDGVQEISQAMDEQAQRSERVVSSVDDIATI 477
Query: 692 AEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFK 738
++ T AE VS+A E+QTA+I E+ + Q L + + +F+
Sbjct: 478 SQATADRAENVSAASEEQTASITEVTGSLQSLAAQADTLEDRLNEFR 524
>pir||F70028 transmembrane receptor taxis protein homolog yvaQ - Bacillus
subtilis >gi|2635882|emb|CAB15374.1| (Z99121) similar to
transmembrane receptor taxis protein [Bacillus subtilis]
Length = 566
Score = 163 bits (408), Expect = 7e-39
Identities = 98/368 (26%), Positives = 199/368 (53%), Gaps = 15/368 (4%)
Query: 380 VSKDLVGTLNAISKKLERLAEGDLSNGL-TVEVRGELRDIIEDIRSVTETFRESIGSLVE 438
+++++V + + + +AEGDLSN + + + EL D+ E ++ + R+ +G +
Sbjct: 206 ITRNIVKPIIRMKESANHIAEGDLSNDMEALNSKDELGDLNEALQKMVGNLRDIVGYSKD 265
Query: 439 MANDLEKRANALAQV-------SKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRL 491
+++ + + LA SK +TE +N++ E +Q + +A E++NE T+ +
Sbjct: 266 ISSRVLSSSQVLATATNETRSGSKHITETMNEMAEGSEQQAQDAVTIAESMNEFTESI-- 323
Query: 492 VAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEM 551
+++ S V+ +A G++ +L++++ I H++ V + +
Sbjct: 324 -----DKAYNHGITISDTSQNVLELAVSGNENMATSLQQMKTIHHIVEEAVHKVRSLEQH 378
Query: 552 SRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNI 611
S++I ++ VI IAEQTNLL+LNAAIEAARAGE+G+GFAVVA+E+RKLA+ + +I
Sbjct: 379 SQDINKLVQVINGIAEQTNLLSLNAAIEAARAGESGKGFAVVAEEVRKLADGVSDSVQDI 438
Query: 612 KSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQI 671
I++ EI + + + + + +E L DT + +I + ++ + V + +
Sbjct: 439 TRIVNGTQQEIHTVITYLESSFTEVEKGTENLTDTGQAMQHIKQSVTHVADSIKEVTDGL 498
Query: 672 VRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMR 731
+ + +++EN+A+ +EE+ A EE S EQ +++++ A+EL+ + +
Sbjct: 499 KQLTNQSITINQSIENIASVSEESAAGIEETFSITEQSAHSMDQVLLNAEELEQLANELN 558
Query: 732 QIVGKFKV 739
+ +G+F +
Sbjct: 559 EKMGQFTI 566
>dbj|BAB07582.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 559
Score = 162 bits (407), Expect = 9e-39
Identities = 99/364 (27%), Positives = 198/364 (54%), Gaps = 7/364 (1%)
Query: 380 VSKDLVGTLNAISKKLERLAEGDLSN-GLTVEVRGELRDIIEDIRSVTETFRESIGSLVE 438
+++ + ++++ ++ ++A+GDLS + V+ + E+ + + + R IG E
Sbjct: 199 IARIITKPIHSLLGQVSQIAKGDLSGEDINVKSKDEIGRLAKAFDEMKSHLRSLIGKTKE 258
Query: 439 MANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEE 498
M++ + A L+ S++ NQV IQ VS ++ + + ++ E
Sbjct: 259 MSDQVTATAQELSASSQESVTVTNQVATTIQDVSEQSMDTVDRAKASVIAAKEMSAGVER 318
Query: 499 SVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEI 558
A + S E S A +G + + A+++++ QH + + + ++ E S I I
Sbjct: 319 ITFATADVSIKADEAASHAEDGERSIERAIEQMDTAQHSVQQSATFIKQLGERSSEIGSI 378
Query: 559 TNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKI 618
+I SIAEQTNLLALNAAIEAARAGE G+GFAVVA E+RKLAEES ++A+ I ++ I
Sbjct: 379 LELIHSIAEQTNLLALNAAIEAARAGEHGKGFAVVADEVRKLAEESGRSANQISKMLATI 438
Query: 619 TDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERM---TTVKEQIVRTQ 675
+ ++A++ +G + + ++ + D A I + +E+M +T +QI R
Sbjct: 439 QQDTEKAIQEMDKGQVEVEKGTKVVGDAGATFAKITASIAAVNEQMLDVSTATQQIARNT 498
Query: 676 EEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVG 735
E+ +++N+ ++ + ++ V+++ E+Q +++EE+ +A++L ++ +++ +
Sbjct: 499 IELSD---SIQNMEQASMQNADHSQTVAASTEEQLSSMEEIAYSAEQLSNLAAGLQEEIN 555
Query: 736 KFKV 739
+FK+
Sbjct: 556 RFKL 559
>pir||B82110 methyl-accepting chemotaxis protein VC2161 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656714|gb|AAF95306.1| (AE004288) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 623
Score = 161 bits (404), Expect = 2e-38
Identities = 144/587 (24%), Positives = 251/587 (42%), Gaps = 103/587 (17%)
Query: 139 YDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVITYAVPVYVNGQFKGVIGLDVFVSTLL 198
YDPR RPWYV AK + ++TEPY D +T + +I+ PVY F G + DV ++ L
Sbjct: 120 YDPRKRPWYVDAKRERKLVVTEPYVDISTKKIIISIGTPVYQQSNFVGAMFYDVELTQLA 179
Query: 199 NETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPELKDLADELKKGKDEGYVL 258
+ L GY+ I ++G+T+ HPN E + +P + +LK+G
Sbjct: 180 QLVNSVNLFDAGYLFITTKDGVTIAHPNAENNGEKFSQFLPNV-----DLKEGTQR---- 230
Query: 259 YTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVI 318
G + + ++ + W + A V S + D + + + G + +
Sbjct: 231 IELDGKYYLVKFAQVPSESWYIGAVVDES----IAFAMVDDLRHSSLIYTVIGVLLSIIG 286
Query: 319 IVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFE 378
+ ++ V+ K PL L A + +A G+ +++ L +E F
Sbjct: 287 LSFLIKVLMK-------PLGALSRAIEDVASGQ-GDLTKRLDTNTDME----------FA 328
Query: 379 AVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVE 438
++KD + K+++ L +G +I+ ES ++ +
Sbjct: 329 ILAKDFNVFCETLQKRIQHL-------------KGIGAEIMHGTEQTVLGAHESASAMAQ 375
Query: 439 MANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEE 498
+LE+ A A+ +++ TE N A A E DG ++V+ T+
Sbjct: 376 QLQELEQLATAMHEMAVTATEVANNAQGA-------AAAAHEADEASQDGSKVVSDTT-- 426
Query: 499 SVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEI 558
R+++ S + + V E V + + NIE I
Sbjct: 427 --RSIDALSARIEQAV----------------------------EEVKGLEVATGNIETI 456
Query: 559 TNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKI 618
VI IA+QTNLLALNAAIEAARAGE+GRGFAVVA E+R LA+ ++Q+ I+++I+++
Sbjct: 457 LKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQL 516
Query: 619 ----------TDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVK 668
+E K + + + ES + +R I ++++ + +E + V
Sbjct: 517 QSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVA 576
Query: 669 EQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEE 715
E+I ++ + + SA+ S A+E QT + E
Sbjct: 577 EEINTNTVKIKDL----------STQVADSAKSASMAMEVQTENVRE 613
>sp|P42258|HTR2_HALVA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (METHYL-ACCEPTING
PHOTOTAXIS PROTEIN II) (MPP-II) >gi|1364151|pir||S55296
sensory rhodopsin II transducer protein - Haloarcula
vallismortis (fragment) >gi|516322|emb|CAA84549.1|
(Z35308) transducer of sensory rhodopsin II [Haloarcula
vallismortis]
Length = 433
Score = 161 bits (403), Expect = 3e-38
Identities = 108/395 (27%), Positives = 203/395 (51%), Gaps = 15/395 (3%)
Query: 353 KQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGL-TVEV 411
KQ +E K+ R+++ + EA++ L S L+ A GDL+ + T +
Sbjct: 29 KQEAEAAKEQAQAAREDVESERNEMEALTGHLELKAQQYSDALDAAANGDLTARVKTDSM 88
Query: 412 RGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQV 471
+ ++ EDI + + ++I + A ++ + ++ + ++ V A QV+++I ++
Sbjct: 89 NDAMAEVGEDINTTLDALEDTIADMKAFATNVIQSSDRVNSNAERVDRASKQVSKSINEI 148
Query: 472 SIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRI 531
Q E + M+ ++ T+++ + ++ + + +G + EA+ +
Sbjct: 149 FEGTTEQNEGLESAAAEMQNLSATAQQVASSAQQVADTSQSAAKVGEDGREAAQEAIAEM 208
Query: 532 EDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFA 591
I+ E ++ + + I EI VITSI EQTN+LALNA+IEAA A G GFA
Sbjct: 209 SAIEAETGETVEEINALDDELDEIGEIVGVITSIVEQTNMLALNASIEAAHADGDGEGFA 268
Query: 592 VVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATK-------EGVSVIGESSETLR 644
VVA EI+ LAEE+K+AA +I+ I+ I ++ + VE + EGVS + E+ + L
Sbjct: 269 VVADEIKGLAEETKEAAADIEGRIEAIQEQAGDTVETMESTSTRITEGVSTVEETVDALE 328
Query: 645 DTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSS 704
+ Y + T +QE +R T E+ RT ++V + +++L +++T A+ V+
Sbjct: 329 TIVEYTEEVDTGIQEI-DRAT---EEQARTAQDV---MGTIDDLTTISQQTATEADTVAG 381
Query: 705 AIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
A + Q+A+IEE+ +A EL+ + ++ +F V
Sbjct: 382 AAQDQSASIEEVSDSATELRQRADDLESLLDRFTV 416
>gb|AAG19257.1| (AE005021) Htr6 transducer; Htr6 [Halobacterium sp. NRC-1]
Length = 789
Score = 160 bits (401), Expect = 4e-38
Identities = 133/516 (25%), Positives = 244/516 (46%), Gaps = 73/516 (14%)
Query: 276 TGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLA 335
T W+ V +V TG + DT + ++V+ + ++++ +V + +T+
Sbjct: 271 TDWVTVTSVD----TGEAFAVRDTVGQTVTVLVV-------LAVISLAIVGIALGRHTVT 319
Query: 336 PLEKLKYAAQALAEG------------------------------RLKQVSEYLKQIRYL 365
PL++L+ AQ + G R+++ +++
Sbjct: 320 PLKRLRNRAQDIESGTFDVDLSTRRIDEVGRLYGSFDDMRVSLQDRIQEAEAAVEEANAA 379
Query: 366 --ERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIR 423
E +E+ + +A ++ T A S++L+ A D S + G+L + +++
Sbjct: 380 KAEAEELRTDAEDAQAEAERAKATAEAASERLQERA-ADYSEVMQAVADGDLTERLDEDA 438
Query: 424 SVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETIN 483
E R M + LE +A + +V + QV +++ +Q E I
Sbjct: 439 D-EEAMRAVATEFNAMLDGLEATIAQVAGFADEVADETLQVATGAEEIETTSQTVSERIQ 497
Query: 484 EITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKR-----------IE 532
EI DG E + M+E S ++ EV + + ++ +A++R I+
Sbjct: 498 EIADGAIQQHDDLERAAGEMDELSASIQEVAASSATVAETAADAVERGEAGRDAAESAID 557
Query: 533 DIQHMMSRIEETVSKVAEMSRNIEEITNVI---TSIAEQTNLLALNAAIEAARAGEAGRG 589
D+ + S + V ++ + + +I ++I T IAEQTN+LALNA IEAARA + G G
Sbjct: 558 DMAEIESLSADAVDQILALQERMSDIGDIIEFITDIAEQTNMLALNANIEAARADKDGDG 617
Query: 590 FAVVAQEIRKLAEESKQAADNIKSIIDKI---TDEIKEAVEATKE----GVSVIGESSET 642
FAVVA E++ LAEE+KQAA +I+S I + TDE + AT E GVS + ++
Sbjct: 618 FAVVANEVKDLAEETKQAAADIESEIQAVQAETDETVADIRATSEHIDDGVSTVERAAAA 677
Query: 643 LRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEV 702
+ DT+ + + +QE S+ ++Q TQ V R ++++A ++ T AE+V
Sbjct: 678 IEDTVDAIEDANHGIQEISD---ATEDQADATQSVV----RRVDDVADISQHVTEDAEQV 730
Query: 703 SSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFK 738
S+A E+Q+A++ E+ R+A +L+D + V +F+
Sbjct: 731 SAAAEEQSASVAEIARSADDLRDRADALATTVNQFE 766
>pir||B81251 probable methyl-accepting chemotaxis signal transduction protein
Cj1564 [imported] - Campylobacter jejuni (strain NCTC
11168) >gi|6968981|emb|CAB73552.1| (AL139079) putative
methyl-accepting chemotaxis signal transduction protein
[Campylobacter jejuni]
Length = 662
Score = 160 bits (401), Expect = 4e-38
Identities = 144/545 (26%), Positives = 248/545 (45%), Gaps = 56/545 (10%)
Query: 134 ELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVITYAVPVYVNGQFKGVIGLDVF 193
EL + D + + WY +A + +T Y D Q+VITY+ +Y +G+ GV+G+D+
Sbjct: 139 ELRDDLDIKTKDWYQEALKTNDIFVTPAYLDTVLKQYVITYSKAIYKDGKIIGVLGVDIP 198
Query: 194 VSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPELKDLADELKKGKD 253
L N K G + DQ N+E +N +I P L + K D
Sbjct: 199 SEDLQNLVAKTP----GNTFLFDQKNKIFAATNKELLNP-SIDHSPVL----NAYKLNGD 249
Query: 254 EGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFA 313
+ Y +++G K + T I PI A IQ
Sbjct: 250 NNFFSYKLNNEERLGACT--KVFAYTACITESADIINKPIYKAA----------FIQAIV 297
Query: 314 VGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGAL 373
V +++V ++++Y I S L+PL ++ + + + ++ + I DE G
Sbjct: 298 V-IIVVVFSVILLYFIVSKYLSPLAAIQTGLTSFFDF-INYKTKNVSTIEVKSNDEFG-- 353
Query: 374 IQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESI 433
Q A++++++ T + + + + E + ++V G L I T
Sbjct: 354 -QISNAINENILATKRGLEQDNQAVKESVQT--VSVVEGGNLTARI--------TANPRN 402
Query: 434 GSLVEMANDLEKRANAL-AQVSKDVTEAINQVNEAIQQVSIEAQRQQE------TINEIT 486
L+E+ N L K + L A+V D+ AI+++ E + + + + T N +
Sbjct: 403 PQLIELKNVLNKLLDVLQARVGSDMN-AIHKIFEEYKSLDFRNKLENASGSVELTTNALG 461
Query: 487 DGMRLVAQTSEESVRAMEEFSG----AVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIE 542
D + + + S + A+ SG AV + + +N +Q +E +E+I M +
Sbjct: 462 DEIVKMLKQSSDFANALANESGKLQTAVQSLTTSSNSQAQSLEETAAALEEITSSMQNVS 521
Query: 543 ETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAE 602
S V S I+ +T +I IA+Q NLLALNAAIEAARAGE GRGFAVVA E+RKLAE
Sbjct: 522 VKTSDVITQSEEIKNVTGIIGDIADQINLLALNAAIEAARAGEHGRGFAVVADEVRKLAE 581
Query: 603 ESKQAADNIKSIIDKITDEIKEAVEATKE---GVSVIGES----SETLRDTIGYLANIAT 655
++++ I++ + + I + E+ KE G++ I +S +T +D + +AN +
Sbjct: 582 RTQKSLSEIEANTNLLVQSINDMAESIKEQTAGITQINDSVAQIDQTTKDNV-EIANESA 640
Query: 656 LLQET 660
++ T
Sbjct: 641 IISST 645
>dbj|BAB07619.1| (AP001520) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 579
Score = 159 bits (399), Expect = 8e-38
Identities = 111/367 (30%), Positives = 194/367 (52%), Gaps = 22/367 (5%)
Query: 380 VSKDLVGTLNAISKKLERLAEGDLS-NGLTVEVRGELRDIIEDIRSVTETFRESIGSLVE 438
VS+ +V + +S+ + +AEG+L+ L V+ R E+ D+ + E R+ I +E
Sbjct: 219 VSRMVVKPVVMVSEAAKVIAEGNLTVEPLKVKNRDEIGDLAASFNLMVENLRKII---LE 275
Query: 439 MANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEE 498
+ N+ E+ A + Q++ E + + V Q + ++ ++V SE+
Sbjct: 276 VGNNAEQVAASSEQLTASAEETSKITEQIVSTVQTVTQGVDNQVEKVEYTHKIVGDMSED 335
Query: 499 SVRAMEEFSGAVTEVVSIANEGSQKGDEAL----KRIEDIQHMMSRIEETVSKVAEMSRN 554
+R + E + V+ A+E S G + + K++ I +S ++E + + + S+
Sbjct: 336 -IRKIAENAKEVSTTSMEASEKSSAGKQVIETLVKQMTLINQSVSGLDEIIKGMRDNSKE 394
Query: 555 IEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSI 614
I +I VIT I++QTNLLALNAAIEAARAGEAG+GF+VVA E+RKLAE++ +A I ++
Sbjct: 395 INQIVKVITEISDQTNLLALNAAIEAARAGEAGKGFSVVADEVRKLAEQTSLSAKQISNL 454
Query: 615 IDKI---TDEIKEAVEATKEGV-------SVIGESSETLRDTIGYLANIATLLQETSERM 664
I + TD+ +++E T E V GES E + T+ + + ++ +++
Sbjct: 455 ISNVQKETDQAVQSMETTTEEVVSGMGLADTAGESFEHINQTVSEVTRQIQNVSDSVQKV 514
Query: 665 TTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELK 724
T Q+V T +D E+ A E AS EE + +E+ AA L + A+EL+
Sbjct: 515 ATGTRQMVET---IDIVNDVSESSAKGMNEVAASTEEQMATMEEVAAASATLAKMAEELQ 571
Query: 725 DMVGRMR 731
+++GR +
Sbjct: 572 ELIGRFK 578
>gb|AAB17882.1| (U75437) transducer HtC protein [Halobacterium salinarum]
Length = 792
Score = 159 bits (398), Expect = 1e-37
Identities = 95/359 (26%), Positives = 189/359 (52%), Gaps = 13/359 (3%)
Query: 391 ISKKLERLAEGDLSNGLTVEVRGEL-RDIIEDIRS-----VTETFRESIGSLVEMANDLE 444
++++LER A + S+ + G+L R + ED+ S + E F + +G + +
Sbjct: 423 LNERLERRA-AEYSDEMAAAAAGDLTRRLDEDVDSDGMQDIAEAFNDMMGDVEATLAQVR 481
Query: 445 KRANALAQVSKDVTEAI------NQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEE 498
A+A+ S DV +A +QV+E++Q +S +A+ Q++ + + D + ++ T E+
Sbjct: 482 SIADAVDAASTDVHDAAEIRSASDQVSESVQDISADAEEQRDRLGTVGDEVHALSATVED 541
Query: 499 SVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEI 558
V + + + G + G++A+ +E I+ E V+ + E I +
Sbjct: 542 IAARPTTSPSTVNQAATESERGQELGEDAVAELERIEATADSAVERVTALEEAVDAIGHV 601
Query: 559 TNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKI 618
T VIT IAEQTN+LALNA IEAARA ++G GFAVVA E++ LA+E K++A I++++D +
Sbjct: 602 TGVITDIAEQTNMLALNANIEAARADKSGDGFAVVADEVKDLADEVKESATEIETLVDDV 661
Query: 619 TDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEV 678
++ + V E + SET+ + + +I ++ + + ++ +
Sbjct: 662 QADVADTVADMSELGDRVDAGSETIEAALAAVDDIGDQVEAANGSVQSISDATDEQAAST 721
Query: 679 DKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKF 737
++ + ++ + ++ T +++VS+A E+Q A++ E+ A +L D V + ++ +F
Sbjct: 722 EEVVTMIDEVTDLSDRTATESQQVSAAAEEQAASVSEVAGRADDLDDQVSTLNDLLDQF 780
>gb|AAG19968.1| (AE005078) Htr17 transducer; Htr17 [Halobacterium sp. NRC-1]
Length = 536
Score = 159 bits (397), Expect = 1e-37
Identities = 112/471 (23%), Positives = 221/471 (46%), Gaps = 18/471 (3%)
Query: 278 WIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPL 337
W V + + GP++ A T++ + + V+ + G + IV L A
Sbjct: 50 WTGVVALEWIGVAGPVMDAFSTSLLAVLIGVVAISSTGTISIVEDLKTSNARAHRRRKDA 109
Query: 338 EKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKD--LVGTLNAISKKL 395
E+ K A + Q ++ Q E + + A +Q A +D L + S +
Sbjct: 110 EQAKRRADE--QRAQAQEAKAEAQDAREEAETLAAKLQE-RAAERDAQLSKKASEYSSVM 166
Query: 396 ERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSK 455
E+ A GDL+ VR + + V + F E I + EM + A +A S+
Sbjct: 167 EKAASGDLT------VRANSSSDSDAMTEVGQAFNEMIAAFEEMVARTREFAGDVADNSR 220
Query: 456 DVTEAIN-------QVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSG 508
D+ +++ QV E++Q++S R+ + + TD ++ ++ EE + + +
Sbjct: 221 DIHASVDEIEAASEQVAESVQEISAGTDREHTRLADATDELQSLSGAVEEVAASASQVAD 280
Query: 509 AVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQ 568
+ +GS A+ ++ DIQ + + +A ++ I + ++I I +Q
Sbjct: 281 VSDQAADRGRQGSDDAAAAVTQMTDIQSETEAVVSEANALAAEAQEIRRVVDLINDITDQ 340
Query: 569 TNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEA 628
T+LLALNA+IEAARA + G GFAVVA E+++LAEE+ +A D I++++D + + V+
Sbjct: 341 THLLALNASIEAARADQDGDGFAVVAAEVKELAEETNEATDEIETLVDNLLSSTQSVVDD 400
Query: 629 TKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENL 688
+++ + + +ET+ + + L I + + +E + + + D + +E +
Sbjct: 401 SEQMAATVSSGTETVENALTALEEIGDHVTDVNEAVQQIDDATDAQAASADTTVSMIEEI 460
Query: 689 AASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+E+ ++ A VS+A +QQTA++ ++ L D ++ ++ F V
Sbjct: 461 EDISEQNSSEAASVSAAAQQQTASLSDVTDGVTRLVDRADTLQDVLTGFTV 511
>pir||E82273 accessory colonization factor AcfB VC0840 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655292|gb|AAF94003.1| (AE004169) accessory
colonization factor AcfB [Vibrio cholerae]
Length = 626
Score = 157 bits (394), Expect = 3e-37
Identities = 150/643 (23%), Positives = 290/643 (44%), Gaps = 106/643 (16%)
Query: 102 LSEFKKIKELNKDVSYVYFG---DEEGHMYMYPPD-ELPEGYDPRVRPWYVQAKEKGGAI 157
LS+FK + + + FG + G + P+ ++P G+DPR R WY+ AK+
Sbjct: 81 LSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFKVPTGFDPRTRSWYLNAKKLNTFS 140
Query: 158 ITEPYRDAATGQWVITYAVPVYVNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQ 217
++EPY D T + ++T + P+Y GVI D+ + + K G I I+D
Sbjct: 141 LSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDIPLDDVQELIKSYNPFDAGTIFIVDN 200
Query: 218 NGMTLVHPNEEFINKLNIFQVPELKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTG 277
+G ++ N+ I+ N+F + L+ K KD+ V Y K G
Sbjct: 201 SG-KIIFGNKNDISGKNLFGDFDSFPLSVSESKTKDKNGVNYDVL-------IKMSDFGG 252
Query: 278 WIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPL 337
W +V+ + I++ + +I ++ +V F I++ + ++ K PL
Sbjct: 253 WNLVSIIDHDKARSDIITLRNNSIFTAVILA----SVFFAILLFTMRLMLK-------PL 301
Query: 338 EKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLER 397
+L A ++ G ++ +I E +I +F VG L +I +++
Sbjct: 302 HQLTDAMVNISSGS----ADLTVRIPNSTDQEFSKIINSFNI----FVGNLQSIVSEVKM 353
Query: 398 LAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDV 457
+E N +T E + EL ++ + SV + +RE + L N++ +N +AQ++ +
Sbjct: 354 NSE--KINCITTETQ-ELVEVCNN--SVADQYRE-LDMLASSMNEMVATSNQIAQITSEA 407
Query: 458 TEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIA 517
+E +++N ++ +G+ GAV+ V
Sbjct: 408 SEITSKIN-----------------GQVNEGV------------------GAVSSVT--- 429
Query: 518 NEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSR---NIEEITNVITSIAEQTNLLAL 574
E + +++ ++++T S + +++R NI+ I I IA+QTNLLAL
Sbjct: 430 --------------ESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLAL 475
Query: 575 NAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVS 634
NAAIEAARAGE GRGFAVVA E+R LA +++++ NI SII + + +V E +
Sbjct: 476 NAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFN 535
Query: 635 VIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEE 694
+ +SET+ T+ ++ + + + + +++ + ++ A + +EE
Sbjct: 536 I---ASETM-----------TISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEE 581
Query: 695 TTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKF 737
+++ + + ++ ++ + A K ++G ++ KF
Sbjct: 582 INSNSISIKDKADTLSSLGNKISQQAYSQKALIGHQDDLISKF 624
>sp|P39209|TLPC_BACSU METHYL-ACCEPTING CHEMOTAXIS PROTEIN TLPC >gi|2127141|pir||I40496
methylation enzyme tlpC - Bacillus subtilis
>gi|496484|emb|CAA83970.1| (Z34005) tlpC [Bacillus
subtilis]
Length = 573
Score = 157 bits (392), Expect = 5e-37
Identities = 103/359 (28%), Positives = 183/359 (50%), Gaps = 14/359 (3%)
Query: 388 LNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRA 447
LNA+ E GD++ ++ + EL ++ + ++I ++ + A L +
Sbjct: 215 LNALKSAFESAGNGDMTIEVSDKTGDELSELSVYYNKMRMKLNDTIQTVQQSALQLASAS 274
Query: 448 NALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFS 507
L+ +++ +A ++ EA+QQ++ AQ Q I I + + Q S + +R + +
Sbjct: 275 QQLSAGAEETNQASEKITEAVQQIANGAQDQ---ITRIENSESSLKQASAD-IRDISANT 330
Query: 508 GAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEM-------SRNIEEITN 560
A+ + +A K D K I ++Q M I +++ K E+ S+ IE+I +
Sbjct: 331 AAIADKGQLAQS---KADIGQKEIANVQAQMDAIHQSIQKSGEIIHQLDGRSKQIEQILS 387
Query: 561 VITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITD 620
VIT IA+QTNLLALNAAIEAARAGE G+GFAVVA E+RKLAEES+Q+A I +I +I
Sbjct: 388 VITQIADQTNLLALNAAIEAARAGEQGKGFAVVADEVRKLAEESQQSAGQISKLIIEIQK 447
Query: 621 EIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDK 680
++ + + + + E ++ T IA E S ++ + + +
Sbjct: 448 DMNRSARSVEHVKTEAAEGVTMIQRTRDAFKEIAAATGEISAEISDLSASVTNISASAHQ 507
Query: 681 ALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+ A +E+T + + ++ E+Q AA+EE+ A++ L + + I+ +FK+
Sbjct: 508 INDSFAANTADIKESTKNTRQAAALTEEQFAAMEEITAASETLSQLAEELTGIISQFKM 566
>gb|AAG19812.1| (AE005065) Htr8 transducer; Htr8 [Halobacterium sp. NRC-1]
Length = 643
Score = 156 bits (391), Expect = 7e-37
Identities = 104/400 (26%), Positives = 197/400 (49%), Gaps = 28/400 (7%)
Query: 351 RLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVE 410
RLK +E ++ ++ E+ AL + EA T N + R A+GDLS L +
Sbjct: 249 RLKADAEEAREAAEAQQREVAALNERLEA-------TANTYGAAMARAADGDLSVRLDPD 301
Query: 411 VRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKD-------VTEAINQ 463
V + + ++ +F E + +++ A+ +A S+D + +A Q
Sbjct: 302 VENDA------MAAIAASFNEMLDETETTIREIQAVASDVAAASEDADAGVVEIEDASGQ 355
Query: 464 VNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQK 523
V+E +Q+++ A Q+E + ++ M ++ EE + + + E ++A +G Q
Sbjct: 356 VSETVQEIAAGADEQREKLETVSGEMTDLSAAIEEVAASADSVAERSHETAAVAGDGEQT 415
Query: 524 GDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARA 583
++A+ +Q + + V + + I EI ++I+ +AEQTN+LALNA IEAARA
Sbjct: 416 AEQAIADSRTVQSAVESTVQNVEALDDQLAEISEIVDLISDVAEQTNMLALNANIEAARA 475
Query: 584 GEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETL 643
++G GFAVVA E++ LAEE++ +A +I++++ I +++ V + + ++ +
Sbjct: 476 DKSGDGFAVVADEVKDLAEETRASAGDIEALVADIDAQMQATVTEARTADESVQDAISAV 535
Query: 644 RDTIGYLANIATLLQET----SERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASA 699
+ +A +ET E TT +Q T+E A+ + ++ + T A A
Sbjct: 536 DAVVDAFGTVAENAEETDTGVQEISTTTDDQAASTEE----AVSMIAEVSDISTATAADA 591
Query: 700 EEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
++ S+A EQQT A + L++ R++ +V F V
Sbjct: 592 QQASTAAEQQTTAAATISENTAALREQADRLQGLVSTFDV 631
>sp|P33741|HTRI_HALHA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (METHYL-ACCEPTING PHOTOTAXIS
PROTEIN I) (MPP-I) >gi|421715|pir||A47190 transducer
protein htrI [validated] - Halobacterium salinarum
>gi|305352|gb|AAA72315.1| (L05603) sensory rhodopsin I
transducer [Halobacterium halobium]
>gi|10581131|gb|AAG19913.1| (AE005075) Htr1 transducer;
Htr1 [Halobacterium sp. NRC-1]
Length = 536
Score = 155 bits (389), Expect = 1e-36
Identities = 94/376 (25%), Positives = 199/376 (52%), Gaps = 14/376 (3%)
Query: 375 QAFEAVSKDLVGTLNAISKK----LERLAEGDLSNGLTVEVRGELRDIIED-IRSVTETF 429
QA E +++L T +K+ +E A GDL+ + V+ E + + + +
Sbjct: 138 QAAEREARELAATYQDTAKRYGETMEAAATGDLTQRVDVDTDHEAMETVGTAFNQMMDDL 197
Query: 430 RESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGM 489
+ ++ ++ +A+++E + +++ S D+ + EA+ ++ +A Q+ ++ D +
Sbjct: 198 QATVRTVTTVADEIEAKTERMSETSADIEASAGDTVEAVSKIESQANDQRTELDSAADDV 257
Query: 490 RLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVA 549
+ V+ ++EE +++ + +V + ++ AL + I+ + +++ V +V
Sbjct: 258 QQVSASAEEIAATIDDLASRSEDVATASDAARDSSKSALDEMSSIE---TEVDDAVGQVE 314
Query: 550 EMSRNIEEITN---VITSIAEQTNLLALNAAIEAARAG--EAGRGFAVVAQEIRKLAEES 604
++ + EIT+ VIT I EQTN+LALNA+IEAARAG G GF+VVA E++ LAEE+
Sbjct: 315 QLRDQVAEITDIVDVITDIGEQTNMLALNASIEAARAGGNADGDGFSVVADEVKDLAEET 374
Query: 605 KQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERM 664
+ A+ I ++++K+T + ++ + ++ + + SET+ T+ + IA + E S +
Sbjct: 375 QDRANEIAAVVEKVTAQTEDVTASIQQTRTRVESGSETVESTLRDIRTIADSIAEVSNSI 434
Query: 665 TTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELK 724
++ E V ++E +A +++TTA A + SA+ Q + EE+ + ++ +
Sbjct: 435 DEIQRTTSEQAETVQSTATSVERVAGLSDDTTALASDAESAVIGQRESAEEIAASLEQFQ 494
Query: 725 D-MVGRMRQIVGKFKV 739
+ V +++ V F V
Sbjct: 495 NTAVEQLQSRVASFTV 510
>gb|AAG19122.1| (AE005010) Htr16 transducer; Htr16 [Halobacterium sp. NRC-1]
Length = 628
Score = 155 bits (389), Expect = 1e-36
Identities = 95/383 (24%), Positives = 195/383 (50%), Gaps = 2/383 (0%)
Query: 343 AAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGD 402
A Q E ++ +++ ++ +RD + +A +A++ L S ++++ A+GD
Sbjct: 231 AMQTDLETFIEDLTDAREEAERSQRDAEQSREEA-QALADSLERQAERFSTQMQQAADGD 289
Query: 403 LSNGLTVEV-RGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAI 461
L+ L +V R L I + + + AN ++ R +A++ + ++ ++
Sbjct: 290 LTQRLDTDVDRESLAQIATAFNDMLVQLEALVDRIQATANAVDDRTHAMSASTDEIEQSS 349
Query: 462 NQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGS 521
V ++I+Q+S A+ Q E + M ++ T EE + + + ++ +G
Sbjct: 350 MSVAKSIEQISAGAENQNEKLTAAAGEMTDLSATVEEIASSSNNVAQQAEDAAAMGQDGQ 409
Query: 522 QKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAA 581
+A+ ++ I+ ++ E + + E I +I +I IA QT++LA+NA+IEA
Sbjct: 410 AAATDAIAEMDAIESKATQTVEEMQSLQEEVGRISDIVTMIDDIASQTDMLAINASIEAE 469
Query: 582 RAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSE 641
A +G GFAVVA E++ LAE++ A D ++S+I ++ E E +G+ +
Sbjct: 470 NASTSGDGFAVVADEVKSLAEDTATATDEVESLIAEVEASTSALAEDMYEMRDRVGDGQD 529
Query: 642 TLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEE 701
T+ DT L +I +++ + + ++ + V +A R +E +A+ +++T A
Sbjct: 530 TITDTAALLEDIVDRVEDANAGIQSINDATEDQAASVQEATRMVEEVASVSDQTAGEASN 589
Query: 702 VSSAIEQQTAAIEELRRAAQELK 724
VS+A E+QT+AI+E+ ++AQ L+
Sbjct: 590 VSAAAEEQTSAIQEISQSAQSLQ 612
Score = 75.3 bits (182), Expect = 2e-12
Identities = 100/462 (21%), Positives = 199/462 (42%), Gaps = 43/462 (9%)
Query: 276 TGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLA 335
T W+VV P SD I + T I + + + G VGFV +V + +
Sbjct: 105 TNWVVVKETPKSDALA-IANNVQTNIWVLLGLTLVGL-VGFVAVVR---------AGLIG 153
Query: 336 PLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKL 395
L ++ A+A+G L Q + +I DEIG + F +D+ L + +
Sbjct: 154 SLREITTQTAAIADGNLDQEIQDNGRI-----DEIGRVRSGF----RDIKSYLQTVEGQA 204
Query: 396 ERLAEGDLSNG-LTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVS 454
L++ D N L EV G L + + +++ ETF E + E A +R+ A+ S
Sbjct: 205 IALSQQDFDNDVLDDEVPGTLGESLTAMQTDLETFIEDLTDAREEA----ERSQRDAEQS 260
Query: 455 KDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEE-FSGAVTEV 513
++ +A+ E Q Q QQ ++T RL ES+ + F+ + ++
Sbjct: 261 REEAQALADSLER-QAERFSTQMQQAADGDLTQ--RLDTDVDRESLAQIATAFNDMLVQL 317
Query: 514 VSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLA 573
++ + + ++D H MS + ++ + S ++ + I++ AE N
Sbjct: 318 EALVD----RIQATANAVDDRTHAMSA---STDEIEQSSMSVAKSIEQISAGAENQNEKL 370
Query: 574 LNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGV 633
AA E + +A +A++++ AA + TD I E ++A +
Sbjct: 371 TAAAGEMT---DLSATVEEIASSSNNVAQQAEDAAAMGQDGQAAATDAIAE-MDAIESKA 426
Query: 634 SVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAE 693
+ E ++L++ +G +++I T++ + + + + + E + A + + A A+
Sbjct: 427 TQTVEEMQSLQEEVGRISDIVTMIDDIASQTDMLA---INASIEAENASTSGDGFAVVAD 483
Query: 694 ETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVG 735
E + AE+ ++A ++ + I E+ + L + + MR VG
Sbjct: 484 EVKSLAEDTATATDEVESLIAEVEASTSALAEDMYEMRDRVG 525
>pir||B69896 methyl-accepting chemotaxis protein homolog yoaH - Bacillus
subtilis >gi|2619023|gb|AAB84447.1| (AF027868) YoaH
[Bacillus subtilis] >gi|2634254|emb|CAB13753.1| (Z99114)
similar to methyl-accepting chemotaxis protein [Bacillus
subtilis]
Length = 534
Score = 155 bits (388), Expect = 1e-36
Identities = 103/367 (28%), Positives = 198/367 (53%), Gaps = 18/367 (4%)
Query: 382 KDLVGTLNAISKKLERLAEG--DLSNGLTVEVRGELRDIIEDIRSVTETFRE---SIGSL 436
K ++ L +I+K+LE +A G DL+ + V+ + E + + S T + + I S
Sbjct: 175 KSIMVPLRSINKQLEEIAHGEADLTKKVIVKNKDEFGQLAQSFNSFTHSLTQIVKQISSS 234
Query: 437 VEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIE----AQRQQETINEITDGMRLV 492
E + +A A+ SK +E I++ + +++ ++ E+I E+ D + V
Sbjct: 235 SEQVAASSEELSASAEESKSTSEHISRAMQMAADSNVKQSSMTEKSAESITELLDSISSV 294
Query: 493 AQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIE-DIQHMMSRIEETVSKVAEM 551
A + + + S ++ + I ++ K + +K I+ + + ++ V+ AE+
Sbjct: 295 ASNTGN----IADLSSSMRDKAEIGSKSVNKMLDQMKFIDKSVDSAGNGLQTLVASTAEI 350
Query: 552 SRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNI 611
S +I+++IT+I+EQTNLLALNAAIEAARAGE G+GFAVVA+E+RKLA+E+ ++A++I
Sbjct: 351 S----DISSLITTISEQTNLLALNAAIEAARAGEQGKGFAVVAEEVRKLADETNKSANHI 406
Query: 612 KSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQI 671
+S++ I +E E V K + ++T G I L+++ + ++ V
Sbjct: 407 QSVVATIQNESIETVNNIKVVQENVSSGIVLSQETTGNFNEILNLVEQVTSQIQEVAAAT 466
Query: 672 VRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMR 731
+ V+ + LAA +ET+A+ E V+++ ++Q ++ E+ AA+ L + ++
Sbjct: 467 QQLTSGVEVIQHTVHTLAAGTKETSANTEAVANSSQEQLHSMGEISYAAESLSQLAEELQ 526
Query: 732 QIVGKFK 738
++ +FK
Sbjct: 527 TVINRFK 533
>gb|AAA21387.1| (L25660) accessory colonization factor [Vibrio cholerae]
Length = 626
Score = 155 bits (388), Expect = 1e-36
Identities = 150/644 (23%), Positives = 291/644 (44%), Gaps = 108/644 (16%)
Query: 102 LSEFKKIKELNKDVSYVYFG---DEEGHMYMYPPD-ELPEGYDPRVRPWYVQAKEKGGAI 157
LS+FK + + + FG + G + P+ ++P G+DPR R WY+ AK+
Sbjct: 81 LSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFKVPTGFDPRTRSWYLNAKKLNTFS 140
Query: 158 ITEPYRDAATGQWVITYAVPVYVNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQ 217
++EPY D T + ++T + P+Y GVI D+ + + K G I I+D
Sbjct: 141 LSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDIPLDDVQELIKSYNPFDAGTIFIVDN 200
Query: 218 NGMTLVHPNEEFINKLNIFQVPELKDLADELKKGKDEGYVLY-TFQGIKKIGGYKRLKTT 276
+G ++ N+ I+ N+F + L+ K KD+ V Y F + G
Sbjct: 201 SG-KIIFGNKNDISGKNLFGDFDSFPLSVSESKTKDKNGVNYDVFIKMSDFG-------- 251
Query: 277 GWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAP 336
W +V+ + I++ + +I ++ +V F I++ + ++ K P
Sbjct: 252 DWNLVSIIDHDKARSDIITLRNNSIFTAVILA----SVFFAILLFTMRLMLK-------P 300
Query: 337 LEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLE 396
L +L A ++ G ++ +I E +I +F VG L +I +++
Sbjct: 301 LHQLTDAMVNISSGS----ADLTVRIPNSTDQEFSKIINSFNI----FVGNLQSIVSEVK 352
Query: 397 RLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKD 456
+E N +T E + EL ++ + SV + +RE + L N++ +N +AQ++ +
Sbjct: 353 MNSE--KINCITTETQ-ELVEVCNN--SVMDQYRE-LDMLASSMNEMVATSNQIAQITSE 406
Query: 457 VTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSI 516
+E +++N ++ +G+ GAV+ V
Sbjct: 407 ASEITSKIN-----------------GQVNEGV------------------GAVSSVT-- 429
Query: 517 ANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSR---NIEEITNVITSIAEQTNLLA 573
E + +++ ++++T S + +++R NI+ I I IA+QTNLLA
Sbjct: 430 ---------------ESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLA 474
Query: 574 LNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGV 633
LNAAIEAARAGE GRGFAVVA E+R LA +++++ NI SII + + +V E
Sbjct: 475 LNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESF 534
Query: 634 SVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAE 693
++ +SET+ T+ ++ + + + + +++ + ++ A + +E
Sbjct: 535 NI---ASETM-----------TISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSE 580
Query: 694 ETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKF 737
E +++ + + ++ ++ + A K ++G ++ KF
Sbjct: 581 EINSNSISIKDKADTLSSLGNKISQQAYSQKALIGHQDDLISKF 624
>pir||E83067 probable chemotaxis transducer PA4633 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950886|gb|AAG08021.1|AE004877_8 (AE004877) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 712
Score = 154 bits (385), Expect = 3e-36
Identities = 148/625 (23%), Positives = 267/625 (42%), Gaps = 111/625 (17%)
Query: 135 LPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVI--TYAVPVYVNGQFKGVIGLDV 192
LP G R +Y KE I +P G+ V+ ++ VP+ V QF+G +G D+
Sbjct: 179 LPTGV--RENEFYACPKENKRPCIIDPAPYEMGGKTVMMSSFNVPIMVGDQFRGAVGADL 236
Query: 193 ---FVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFI------NKLNIFQVPELKD 243
F+ LL + G +A+I NG + + ++ + L+ +V LK+
Sbjct: 237 SLAFIQDLLKRADQQLYDGAGEMALIASNGRLVAYTRDDSKLGEPAGSVLDGNEVDNLKN 296
Query: 244 LADE-------LKKGKDEGYVLYTF--QGIKKIGGYKRLKTTGWIVVATVPLSDITGPIL 294
L + + G E ++ +T G++ W ++ +P + + G +
Sbjct: 297 LTVDQPLYDIDAEHGHIELFLPFTIADSGVR------------WTLMLQIPQAAVFGELQ 344
Query: 295 SATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQ 354
++ + ++ G V+ L+V++ + PL
Sbjct: 345 QLQGELSDQRQQDILGMSLAGLVVAALGLLVVWLVGYGIARPL----------------- 387
Query: 355 VSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGE 414
+ LVG L+ I++ EGDL+ L+ E E
Sbjct: 388 ---------------------------RQLVGMLDDIAQ-----GEGDLTRRLSSERADE 415
Query: 415 LRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIE 474
L S+ + F +G L M + + ++ S+ + + N+ +QQ E
Sbjct: 416 LG-------SIAKGFNTFLGKLQNMIGQVVQSVQKVSDSSEHTADIAIRTNQGVQQQLAE 468
Query: 475 AQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDI 534
+ ++E+T + VA+ + + A A A++G Q + + I+ +
Sbjct: 469 IELVATAVHEMTATAQDVARNATHAAEAANHADQA-------AHQGKQIVESSSAAIQAL 521
Query: 535 QHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVA 594
+ R V +A+ S NI I I IAEQTNLLALNAAIEAARAGE GRGFAVVA
Sbjct: 522 ASEIGRAVGVVQNLAKDSENINAILVAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVA 581
Query: 595 QEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIA 654
E+R LA++++QA + I+S+I ++ + T++ V V+ +S E D++ + A
Sbjct: 582 DEVRNLAQKTQQATEEIQSMIQQLQ-------QGTRDVVKVMQDSQERTDDSVRHARQAA 634
Query: 655 TLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIE 714
L+ ++ ++ + + + TQ A E +A AE+ + + Q +
Sbjct: 635 EALESITQAVSVIND--MNTQ-----IASAAEEQSAVAEDINRNVANIGQVANQVAGGAD 687
Query: 715 ELRRAAQELKDMVGRMRQIVGKFKV 739
E +A+ EL + + R++V +F+V
Sbjct: 688 EASQASAELTRLAEQQRRLVNQFRV 712
>pir||T44262 transducer protein htrVI [similarity] - Halobacterium salinarum
>gi|4104485|gb|AAD02052.1| (AF036231) transducer HtrVI
[Halobacterium salinarum]
Length = 788
Score = 154 bits (385), Expect = 3e-36
Identities = 132/516 (25%), Positives = 243/516 (46%), Gaps = 74/516 (14%)
Query: 276 TGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLA 335
T W+ V +V TG + DT + ++V+ + ++++ +V + +T+
Sbjct: 271 TDWVTVTSVD----TGEAFAVRDTVGQTVTVLVV-------LAVISLAIVGIALGRHTVT 319
Query: 336 PLEKLKYAAQALAEG------------------------------RLKQVSEYLKQIRYL 365
PL++L+ AQ + G R+++ +++
Sbjct: 320 PLKRLRNRAQDIESGTFDVDLSTRRIDEVGRLYGSFDDMRVSLQDRIQEAEAAVEEANAA 379
Query: 366 --ERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIR 423
E +E+ + +A ++ T A S++L+ A D S + G+L + +++
Sbjct: 380 KAEAEELRTDAEDAQAEAERAKATAEAASERLQERA-ADYSEVMQAVADGDLTERLDEDA 438
Query: 424 SVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETIN 483
E R M + LE +A + +V + QV +++ +Q E I
Sbjct: 439 D-EEAMRAVATEFNAMLDGLEATIAQVAGFADEVADETLQVATGAEEIETTSQTVSERIQ 497
Query: 484 EITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKR-----------IE 532
EI DG E + M+E S ++ EV + + ++ +A++R I+
Sbjct: 498 EIADGAIQQHDDLERAAGEMDELSASIQEVAASSATVAETAADAVERGEAGRDAAESAID 557
Query: 533 DIQHMMSRIEETVSKVAEMSRNIEEITNVI---TSIAEQTNLLALNAAIEAARAGEAGRG 589
D+ + S + V ++ + + +I ++I T IAEQTN+LALNA IEAARA + G G
Sbjct: 558 DMAEIESLSADAVDQILALQERMSDIGDIIEFITDIAEQTNMLALNANIEAARADKDGDG 617
Query: 590 FAVVAQEIRKLAEESKQAADNIKSIIDKI---TDEIKEAVEATKE----GVSVIGESSET 642
FAVVA E++ LAEE+KQAA +I+S I + TDE + AT E GVS + ++
Sbjct: 618 FAVVANEVKDLAEETKQAAADIESEIQAVQAETDETVADIRATSEHIDDGVSTVERAAAA 677
Query: 643 LRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEV 702
+ DT+ + + +QE S+ ++Q TQ V R ++++A ++ T AE+V
Sbjct: 678 IEDTVDAIEDANHGIQEISD---ATEDQADATQSVV----RRVDDVADISQHVTEDAEQV 730
Query: 703 SSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFK 738
S+A E+Q+A++ E+ R + +L+D + V +F+
Sbjct: 731 SAAAEEQSASVAEIAR-SDDLRDRADALATTVNQFE 765
>dbj|BAA06432.1| (D30762) methyl-accepting chemotaxis protein TlpC [Bacillus
subtilis] >gi|1805416|dbj|BAA08978.1| (D50453)
methyl-accepting chemotaxis protein of B. subtilis
[Bacillus subtilis] >gi|2632630|emb|CAB12138.1| (Z99105)
methyl-accepting chemotaxis protein [Bacillus subtilis]
Length = 573
Score = 153 bits (384), Expect = 4e-36
Identities = 100/359 (27%), Positives = 177/359 (48%), Gaps = 14/359 (3%)
Query: 388 LNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRA 447
L A+ E GD++ ++ + EL ++ + ++I ++ + A L +
Sbjct: 215 LTALKSAFESAGNGDMTIEVSDKTGDELSELSVYYNKMRMKLNDTIQTVQQSALQLASAS 274
Query: 448 NALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFS 507
L+ +++ +A ++ EA+QQ++ AQ Q I I + + Q S + + + S
Sbjct: 275 QQLSAGAEETNQASEKITEAVQQIANGAQDQ---ITRIENSESSLKQASAD----IRDIS 327
Query: 508 GAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEM-------SRNIEEITN 560
+ K D K I ++Q M I +++ K E+ S+ IE+I +
Sbjct: 328 ANTAPIADKGQLAQSKADIGQKEIANVQAQMDAIHQSIQKSGEIIHQLDGRSKQIEQILS 387
Query: 561 VITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITD 620
VIT IA+QTNLLALNAAIEAARAGE G+GFAVVA E+RKLAEES+Q+A I +I +I
Sbjct: 388 VITQIADQTNLLALNAAIEAARAGEQGKGFAVVADEVRKLAEESQQSAGQISKLIIEIQK 447
Query: 621 EIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDK 680
++ + + + + E ++ T IA E S ++ + + +
Sbjct: 448 DMNRSARSVEHVKTEAAEGVTMIQRTRDAFKEIAAATGEISAEISDLSASVTNISASAHQ 507
Query: 681 ALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+ A +E+T + + ++ E+Q AA+EE+ A++ L + + I+ +FK+
Sbjct: 508 INDSFAANTADIKESTKNTRQAAALTEEQFAAMEEITAASETLSQLAEELTGIISQFKM 566
>pir||C83012 probable chemotaxis transducer PA5072 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951365|gb|AAG08457.1|AE004920_7 (AE004920) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 647
Score = 153 bits (383), Expect = 6e-36
Identities = 112/374 (29%), Positives = 186/374 (48%), Gaps = 36/374 (9%)
Query: 370 IGALIQAFE-----AVSKDLVGTLNAISKKLERLAEGDLS----NGLTVEVRGELRDIIE 420
I AL AF A+++ +V L+ + E +A GDL N LT++ R EL +
Sbjct: 297 IAALALAFGCVAGWAINRQIVRPLDEALAQAEAIAAGDLGKRPQNPLTLQRRDELGQLQR 356
Query: 421 DIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQE 480
++ + ++ RE +G + + + L A L+ V++ +N QV+
Sbjct: 357 VMQRMGDSLRELVGRISDGVSQLASSAEELSAVTEQTRAGVNSQKVETDQVATAMHEMAA 416
Query: 481 TINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSR 540
T+ ++ L +Q + + A EE A +G D+A+ RIE + M
Sbjct: 417 TVQDVARNAELASQAARQ---ADEE-----------ARQGDAVVDQAVTRIERLASEMDV 462
Query: 541 IEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKL 600
E ++++ S I + +VI S+AEQTNLLALNAAIEAARAG+AGRGFAVVA E+R L
Sbjct: 463 SSEAMARLKNESEQIGSVLDVIKSVAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRGL 522
Query: 601 AEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATL---L 657
A+ ++Q+ I+ +I ++ EA E + S+ + E R L +I +
Sbjct: 523 AQRTQQSTAEIEGLIQRLQQGAGEAAERLENSRSLTASTVELARRAGAALDSITRTVSDI 582
Query: 658 QETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELR 717
Q + ++ T EQ EE+++++ ++ ++ AE+ ++A EQ A+ EL
Sbjct: 583 QNMNLQIATAAEQQSTVAEEINRSVLSVRDV----------AEQSAAASEQTAASSGELA 632
Query: 718 RAAQELKDMVGRMR 731
R +L+ VGR R
Sbjct: 633 RLGTQLQAQVGRFR 646
>sp|Q02929|CPS_CLOTM PUTATIVE SENSORY TRANSDUCER PROTEIN >gi|477735|pir||B47704 probable
sensory transducer protein - Clostridium thermocellum
>gi|144913|gb|AAA20891.1| (L04736) sensory transducer
protein [Clostridium thermocellum]
Length = 557
Score = 153 bits (382), Expect = 8e-36
Identities = 136/528 (25%), Positives = 247/528 (46%), Gaps = 75/528 (14%)
Query: 190 LDVFVSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPELKDLADELK 249
L ++ ST++NET +I+L + + + + +LV E + K
Sbjct: 34 LSLYESTVINETDRIQLQE---LKALWEKYKSLVDKEVELV------------------K 72
Query: 250 KGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVI 309
GK E I IG R ++ T + TA M +++
Sbjct: 73 SGKTEEARQLLLSDIDDIGDTLRDYFEAFVEYNTTAAKEKVDENKQVASTASTVMIVVIF 132
Query: 310 QGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDE 369
VG +I +A+ V I +I S P+ ++ AA LA G ++ ++ RDE
Sbjct: 133 ----VGILIAIALGVFISRIISK---PIGQMVEAADRLALGDVEV------DVKAETRDE 179
Query: 370 IGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETF 429
IG L ++F K ++ + + +ER+A GD+ TV+VR ++S +
Sbjct: 180 IGKLAESF----KRMIENIREQAYVVERIAAGDM----TVDVR---------VKSDKDLL 222
Query: 430 RESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGM 489
+ + +V+ N++ N +V+ V QV+++ Q+S A Q +I E+T +
Sbjct: 223 GKKLKEMVDTNNEVLSNIN---EVAAQVAAGAKQVSDSSMQLSQGATEQASSIEELTASL 279
Query: 490 RLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVA 549
VA ++ S + + E+ +A +++G++ + M++ +EE +
Sbjct: 280 EQVANQTQLSAKNANQ----ANELAEVAKNNAEQGNKQMAE------MLNAMEE----IN 325
Query: 550 EMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAAD 609
S NI I VI IA QTN+LALNAA+EAARAG+ G+GFAVVA+E+R LA S AA
Sbjct: 326 NSSSNISRIIKVIDEIAFQTNILALNAAVEAARAGQHGKGFAVVAEEVRNLAARSANAA- 384
Query: 610 NIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKE 669
+ T+ I+ ++ T+ G + E++E L + ++ ATL+ + +
Sbjct: 385 ------KETTELIEGTIKRTENGTKIARETAEALNKIVEGISKAATLVNDIAVASNEQAA 438
Query: 670 QIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELR 717
I + + + + + ++ +A++EE+ A++EE+SS E +I + +
Sbjct: 439 AITQINQGIAQVSQVVQTNSATSEESAAASEELSSQAELLKRSIAKFK 486
>gb|AAG18922.1| (AE004994) Htr14 transducer; Htr14 [Halobacterium sp. NRC-1]
Length = 627
Score = 152 bits (381), Expect = 1e-35
Identities = 102/372 (27%), Positives = 185/372 (49%), Gaps = 17/372 (4%)
Query: 378 EAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLV 437
E S+ L ++A+S+ + GDL T V D+ +D R+ E F + + +L
Sbjct: 188 ERQSEQLRALVDALSEATDAARAGDL----TATVDAAALDVTDDHRAAVEDFNQLLETLA 243
Query: 438 EMANDLEKRANALAQVSKDVTEAINQV-------NEAIQQVSIEAQRQQETINEITDGMR 490
+ +D++ ++A+ VS+ E ++ V +E++ +++ A +Q +N I M
Sbjct: 244 DTISDIQSFSDAVLAVSRTTDERVDAVADRSAAVSESVTEIADGANQQTNQLNNIAAEMD 303
Query: 491 LVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAE 550
V+ T EE + + + +G + +E ++ + ++ + ETV +A
Sbjct: 304 TVSATVEEIAASANDVAKTAQAAADRGEDGRGEVEETIEALRALREQSQAVAETVESLAA 363
Query: 551 MSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADN 610
I+ IT +I IAE+TN+LALNA+IEAAR G G GFAVVA E++ LAEE+++ A +
Sbjct: 364 EVERIDGITALIEDIAEETNMLALNASIEAARTGSDGDGFAVVADEVKDLAEETREQAAD 423
Query: 611 IKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQ 670
I I+D +T++ ++A A E V E + G L + ++ E + V+E
Sbjct: 424 ISEIVDAVTEKAEDASIAIGE---VDAEVERKITKAEGVLRDFEAIVDEVANVNHAVQEI 480
Query: 671 IVRTQ---EEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMV 727
T + V + +E +A+ +EET A ++ V+ +QT A +E+ EL +
Sbjct: 481 SDATDQGAQSVTDVVGMVEEVASVSEETAAESDTVADNAAEQTDATDEVADQMDELAEQT 540
Query: 728 GRMRQIVGKFKV 739
+ ++ F V
Sbjct: 541 AALAGMLDDFTV 552
>gb|AAG19986.1| (AE005080) Htr5 transducer; Htr5 [Halobacterium sp. NRC-1]
Length = 810
Score = 151 bits (377), Expect = 3e-35
Identities = 127/531 (23%), Positives = 232/531 (42%), Gaps = 82/531 (15%)
Query: 267 IGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVI 326
+ Y + W+VV P S + A++ I GF + V +V +++V
Sbjct: 292 VAAYTTVPGKNWVVVKHAP---------SESAFALSNQIRTGILGFIL--VALVGVVLVG 340
Query: 327 YKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVG 386
I NT A ++ L AA + G Y + RDEIG L + ++ LV
Sbjct: 341 GTIGRNTAAAVQSLSAAAAEIEAGN------YDVDVASSRRDEIGQLFASIGSMRDALVT 394
Query: 387 TLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTE------------------- 427
++ E+ E E + R+ ED ++ E
Sbjct: 395 QIDEAEAAREQATEAQQDAEAERERAEDARERAEDAKADAEALAAELEAQAERYSDVMAA 454
Query: 428 -------------------------TFRESIGSLVEMANDLEKRANALAQVSK------- 455
+F E + D+++ A+A+A S+
Sbjct: 455 CADGDLTRRMPADDTDNEAMAAIAASFNEMLAQWEHTIIDIQEFADAVATASEEAEVGAA 514
Query: 456 DVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVS 515
D A QV+E++Q+++ A Q+ ++ ++ M ++ EE + + + +
Sbjct: 515 DAERASGQVSESVQEIAGAADEQRNMLDTVSGEMTDLSAAIEEVAASADSVAEHSHQTAE 574
Query: 516 IANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALN 575
IA +G Q ++A++R +Q + + V + + I EI ++I+ IAEQTN+LALN
Sbjct: 575 IARDGEQTAEDAIERSLTVQEAIDATVQNVEALDDQMAEISEIVDLISDIAEQTNMLALN 634
Query: 576 AAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITD-------EIKEAVEA 628
A IEAARA ++G GFAVVA E++ LAEE++++A +I+ I ++ E + A E+
Sbjct: 635 ANIEAARADKSGDGFAVVADEVKDLAEETQESAGDIERRITEVQSQTTATVAEARAAEES 694
Query: 629 TKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENL 688
G+ + E + + T +QE S+ T +Q T+E A+ E +
Sbjct: 695 MDAGIDAVEEVVDAFTAVSDHADETDTGVQEISD---TTDDQAASTEE----AVSMTEEV 747
Query: 689 AASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
A ++ T A+ VS+A E+Q A++ E+ + + L +++ ++ +F+V
Sbjct: 748 ADLSDSTAGEAQSVSAAAEEQAASMSEISDSVESLSGQAEQLKALLSEFEV 798
>pir||E75590 methyl-accepting chemotaxis-related protein - Deinococcus
radiodurans (strain R1)
>gi|6460727|gb|AAF12432.1|AE001863_57 (AE001863)
methyl-accepting chemotaxis-related protein [Deinococcus
radiodurans]
Length = 756
Score = 150 bits (376), Expect = 4e-35
Identities = 129/460 (28%), Positives = 221/460 (48%), Gaps = 75/460 (16%)
Query: 308 VIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLER 367
++ G + +A +++Y I + L +L AQAL +G L +
Sbjct: 342 IVNGLITLLITALATWLLVY-ILQRIVRQLRQLTTNAQALTDGNLNI------HLPVTTS 394
Query: 368 DEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTE 427
DE+G L +F + L NA + ERL L + + G+ D+ DI
Sbjct: 395 DELGVLTSSFNEAAAQL--RTNAERVEQERLESQRLQDHI-----GQFLDVTMDIAEGDL 447
Query: 428 TFR-----ESIGSLVEMANDL-EKRANALAQV----------SKDVTEAINQVNEAIQQV 471
T R + +G++V+ N + ++ A L QV SK + + + Q
Sbjct: 448 TKRGVVTEDILGNVVDSINLMTDELATTLQQVQAASASVSGGSKQMLGTTEAIQQGAQLT 507
Query: 472 SIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKR- 530
+ EAQR E +++IT G+R +A ++ S + E A SQ+G EAL+
Sbjct: 508 AAEAQRVAEQVSQITAGIRQMAHNAQTSAQTARE-----------ALLASQQGQEALQET 556
Query: 531 ---IEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAG 587
+++I+ + ++ + + + + S I+EI + I+ IAEQT+LLA+NA+IEAA AGEAG
Sbjct: 557 LGGMQNIRREVQQVSKRIKTLGDRSLEIQEIVDTISQIAEQTHLLAVNASIEAAGAGEAG 616
Query: 588 RGFAVVAQEIRKLAEESKQA----ADNIKSIIDKITDEIKEAVEATKE---GVSVIGESS 640
F +VA +RKLA S QA A IKS+ ++ D I EA E T+E G + G +
Sbjct: 617 GRFGIVADSVRKLANTSAQATTRIAGLIKSVQAEVQDVIVEAEEGTREVEQGYRIAGSAG 676
Query: 641 ETLRDTIGYLANIATLLQETSERMTTVKEQI-VRTQEEVDKALRALENLAASAEETTASA 699
+ L+D + E +ER + E I TQE+V S E A+
Sbjct: 677 QRLQD-----------IGELTERSAQLAESIAASTQEQVQ-----------SVERVNAAV 714
Query: 700 EEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
++++ ++ +A+++ R AAQ+L+D+ ++ + +F++
Sbjct: 715 QQIAEVAQRSESAVQQGRTAAQQLEDLARQLDTSLARFRL 754
>sp|Q48317|HTR4_HALSA HALOBACTERIAL TRANSDUCER PROTEIN IV >gi|11277608|pir||T46810
halobacterial transducer protein IV [imported] -
Halobacterium salinarum >gi|1435131|emb|CAA64841.1|
(X95589) halobacterial transducer protein IV
[Halobacterium salinarum]
Length = 810
Score = 150 bits (376), Expect = 4e-35
Identities = 117/524 (22%), Positives = 226/524 (42%), Gaps = 68/524 (12%)
Query: 267 IGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVI 326
+ Y + W+VV P S + A++ I GF + V +V +++V
Sbjct: 292 VAAYTTVPGKNWVVVKHAP---------SESAFALSNQIRTGILGFIL--VALVGVVLVG 340
Query: 327 YKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVG 386
I NT A ++ L AA + G Y + RDEIG L + ++ LV
Sbjct: 341 GTIGRNTAAAVQSLSAAAAEIEAGN------YDVDVASSRRDEIGQLFASIGSMRDALVT 394
Query: 387 TLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTE------------------- 427
++ E+ E E + R+ ED ++ E
Sbjct: 395 QIDEAEAAREQATEAQQDAEAERERAEDARERAEDAKADAEALAAELEAQAERYSDVMAA 454
Query: 428 -------------------------TFRESIGSLVEMANDLEKRANALAQVSK------- 455
+F E + D+++ A+A+A S+
Sbjct: 455 CADGDLTRRMPADDTDNEAMAAIAASFNEMLAQWEHTIIDIQEFADAVATASEEAEVGAA 514
Query: 456 DVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVS 515
D A QV+E++Q+++ A Q+ ++ ++ M ++ EE + + + +
Sbjct: 515 DAERASGQVSESVQEIAGAADEQRNMLDTVSGEMTDLSAAIEEVAASADSVAEHSHQTAE 574
Query: 516 IANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALN 575
IA +G Q ++A++R +Q + + V + + I EI ++I+ IAEQTN+LALN
Sbjct: 575 IARDGEQTAEDAIERSLSVQEAIDATVQNVEALDDQMAEISEIVDLISDIAEQTNMLALN 634
Query: 576 AAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSV 635
A IEAARA ++G GFAVVA E++ LAEE++++A +I+ I ++ + V +
Sbjct: 635 ANIEAARADKSGDGFAVVADEVKDLAEETQESAGDIERRITEVQSQTTATVAEARAAEES 694
Query: 636 IGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEET 695
+ + + + + ++ ET + + + ++A+ E +A ++ T
Sbjct: 695 MDAGIDAVEEVVDAFTAVSDHADETDTGVQEISDTTDDQASSTEEAVSMTEEVADLSDST 754
Query: 696 TASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
A+ VS+A E+Q A++ E+ + + L +++ ++ +F+V
Sbjct: 755 AGEAQSVSAAAEEQAASMSEISDSVESLSGQAEQLKALLSEFEV 798
>gb|AAD34887.1|AF141674_1 (AF141674) putative chemotaxis chemoreceptor McpG [Rhizobium
leguminosarum]
Length = 653
Score = 150 bits (374), Expect = 7e-35
Identities = 123/446 (27%), Positives = 205/446 (45%), Gaps = 64/446 (14%)
Query: 313 AVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLER--DEI 370
A+G +++ LV A + PL KL+ + +A+A+G L R LE DEI
Sbjct: 201 ALGIAAVLS-LVAAAVTARTIVGPLAKLQLSLKAMADGNLDGD-------RRLEARGDEI 252
Query: 371 GALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFR 430
G L +A + G +AIS K ER A+ + V R L ++ R++ E
Sbjct: 253 GKLARA-------VAGLRDAISAKAEREADAEAKRA--VSERHRLEQDADERRTLAEQTD 303
Query: 431 ESIGSLVEMAN-----DLEKRAN-----ALAQVSKDVTEAINQVNEAIQQVSIEAQRQQE 480
+++G L + DL ++ +L ++ D A+ ++ A+Q+V+ A
Sbjct: 304 KAVGQLGDALQALADGDLTQQIGTPFIPSLEKLRADFNSAVEKLRAAMQKVAQNASAIAA 363
Query: 481 TINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSR 540
EI +A+ +E+ ++EE + A+ E+ + + S K EA + + + R
Sbjct: 364 GAQEIRSASDDLAKRTEQQAASVEETAAALEEITTTVADSSNKAQEAGQLVRKTKDSAER 423
Query: 541 IEETV-------SKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVV 593
V K+ + I I VI IA QTNLLALNA +EAARAGEAG+GFAVV
Sbjct: 424 SGSVVRDAVDAMGKIESSATEIGSIIGVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVV 483
Query: 594 AQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANI 653
AQE+R+LA+ S +AA IK +I+ + K GV+++GE+ + L++
Sbjct: 484 AQEVRELAQRSAKAAKEIKELINASNGHV-------KSGVALVGETGKALKE-------- 528
Query: 654 ATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAI 713
+ EQ+ + V + A + A +E + + +Q A +
Sbjct: 529 -------------IAEQVQQVDGNVGAIVGASQEQATGLKEINTAVNRMDQGTQQNAAMV 575
Query: 714 EELRRAAQELKDMVGRMRQIVGKFKV 739
EE A+ L + Q++G+F +
Sbjct: 576 EEATAASHNLAKEADALFQLLGQFNI 601
>gb|AAG19801.1| (AE005064) Htr10 transducer; Htr10 [Halobacterium sp. NRC-1]
Length = 489
Score = 150 bits (374), Expect = 7e-35
Identities = 101/314 (32%), Positives = 170/314 (53%), Gaps = 27/314 (8%)
Query: 422 IRSVTETFRESIGSLVEMAN----DLEKRANALAQVSKDVTEAINQVNEAIQ-QVSIEAQ 476
I S + + I S E+AN D+E ++L S+DV E + + A QV A
Sbjct: 190 IDSYAQRLHDEIDSRQELANAVASDVEAPLSSLEATSQDVAERTDTMRAATDDQVDRMAD 249
Query: 477 RQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQH 536
+E I+ ++ + VA T+++ R E+ ++A +G D+AL + DI
Sbjct: 250 VSRE-ISSVSASVEEVASTADDVRRTSEDAE-------ALAQQGEAAADDALATMTDIDE 301
Query: 537 MMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQE 596
+ V ++ E + ++E +T VI IAEQTN+LALNA+IEAARAGEAG GFAVVA E
Sbjct: 302 ATDGVTAGVEQLRERAADVESVTGVIDDIAEQTNMLALNASIEAARAGEAGEGFAVVADE 361
Query: 597 IRKLAEESKQAADNIKSIIDKITDEIKEAVEATK-------EGVSVIGESSETLRDTIGY 649
++ LAEES++ + ++ +++++ E +E V+ EGV + E+ ETL++
Sbjct: 362 VKALAEESREQSTRVEELVEQMQAETEETVDQLDEVNQRIGEGVERVEEAMETLQEITDA 421
Query: 650 LANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQ 709
+ + A+ +QE S T EQ V T+E + ++++ A E A+ ++++ A +QQ
Sbjct: 422 VEDAASGMQEVS---TATDEQAVSTEEVAE----MVDDVDDRAGEIAAALDDIADATDQQ 474
Query: 710 TAAIEELRRAAQEL 723
+EE+R +L
Sbjct: 475 VRTVEEVRETVGKL 488
>pir||B71160 probable methyl-accepting chemotaxis protein - Pyrococcus
horikoshii >gi|3256884|dbj|BAA29567.1| (AP000002) 277aa
long hypothetical methyl-accepting chemotaxis protein
[Pyrococcus horikoshii]
Length = 277
Score = 150 bits (374), Expect = 7e-35
Identities = 84/265 (31%), Positives = 146/265 (54%), Gaps = 4/265 (1%)
Query: 461 INQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEG 520
+N+VNE + +++ E + I E+ D ++ ++ EE ++ S E S+A +G
Sbjct: 6 LNEVNELVSRLNNENVK----IAEVNDYIQTLSAGIEEMNVQAQQLSDFAVESSSMAEKG 61
Query: 521 SQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEA 580
+ D ++ I + +S +AE S+ I+EI VI+SIA QTNLLALNA+IEA
Sbjct: 62 KEISDNVALKVSKISETSREMSNAISILAEYSKKIDEIVYVISSIASQTNLLALNASIEA 121
Query: 581 ARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESS 640
ARAGEAGRGFAVVA+ +R+LA+ SK+AA+ I+ +I ++ + +EA +E V V E
Sbjct: 122 ARAGEAGRGFAVVAENVRELADRSKKAAEQIRDLIKEMQENTNRVIEAIQENVKVTEEVK 181
Query: 641 ETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAE 700
E +++ I +IA ET+ + + E I V + +++++ + A
Sbjct: 182 EAIQELIAAFDDIARRANETATMVKELSEGIDEQANSVQMLVERIDSISKDVSDNLNFAT 241
Query: 701 EVSSAIEQQTAAIEELRRAAQELKD 725
+++ ++ +E ++ +LKD
Sbjct: 242 QLTETVKGSIEKLEVIKNKVSQLKD 266
>pir||S75285 methyl-accepting chemotaxis protein homolog sll1294 - Synechocystis
sp. (strain PCC 6803) >gi|1652276|dbj|BAA17199.1|
(D90904) methyl-accepting chemotaxis protein (MCP)
[Synechocystis sp.]
Length = 953
Score = 149 bits (373), Expect = 9e-35
Identities = 121/470 (25%), Positives = 228/470 (47%), Gaps = 35/470 (7%)
Query: 279 IVVATVPLSDITGPILS-----ATDTAINKM--KMIVIQGFAVGFVIIVAILVVIYKIAS 331
+ VA + DI G L+ ++ N + + +++Q VG V ++ ++ Y +
Sbjct: 493 LTVAIKVIKDIQGQPLALLVRGTSEVEFNDLLERTLLLQ-IGVGAVALLVAAIIAYWLGK 551
Query: 332 NTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAI 391
PL+ L+ AQ L EG +E +DE+G L F A+++ + + ++
Sbjct: 552 TLTKPLKNLQTTAQKLGEGETGVRAEVES------KDEVGQLAVTFNAMAEQVEASTRSL 605
Query: 392 SK-KLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTE---TFRESI--GSLVEMANDLEK 445
+ LER E + L E++ + ++ DI + T R S+ G++ +A+
Sbjct: 606 QETSLERQQEAEKQRQLKEELQDGVVRLLTDIEESSRGDLTVRSSVEAGAVGAIADAFNA 665
Query: 446 RANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEE 505
L ++ K V + +V+ Q+ S E + E + + E +++E
Sbjct: 666 TLAGLRKLVKQVVDTATEVSGQAQEDSQEITSLSDNALEQARALEFATASVAEMAQSIES 725
Query: 506 FSGAVTEVVSIA---NEGSQKG----DEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEI 558
+ + +IA NE +Q+G DE ++ I ++ ++ I + ++AE S I +I
Sbjct: 726 VAISAQTAAAIAKQGNEAAQQGQNTMDETVESIYKVRGRVAEISKKSKRLAESSLEISKI 785
Query: 559 TNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKI 618
+I+ I+E+TNLLA NA+IEAARAGE G+GF +VA E+R+LAE +A I+ +I I
Sbjct: 786 VGIISGISEKTNLLAFNASIEAARAGENGQGFRIVADEVRRLAEMVTLSAQEIEQVILSI 845
Query: 619 TDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEV 678
+E + + +E + + ++ ++ T L N+A + SE + TV + I R E
Sbjct: 846 QEETSQMSQLMEESTNEVVTGTQLVQKTKETLQNLA----QISEEIDTVLDSISRNTESQ 901
Query: 679 DKA----LRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELK 724
A ++N+A+ A+ T+ ++ VS +++ +L+ AA + K
Sbjct: 902 RLASQMVTETVQNVASVAKATSDKSQLVSQSLQSLAKTAVDLQTAAGKFK 951
>pir||T44253 transducer protein htrVIII [validated] - Halobacterium salinarum
>gi|3015619|gb|AAC38313.1| (AF031641) methyl-accepting
aerotaxis transducer protein [Halobacterium salinarum]
Length = 642
Score = 149 bits (373), Expect = 9e-35
Identities = 102/400 (25%), Positives = 195/400 (48%), Gaps = 29/400 (7%)
Query: 351 RLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVE 410
RLK +E ++ ++ E+ AL + EA T N + R A+GDL +
Sbjct: 249 RLKADAEEAREAAEAQQREVAALNERLEA-------TANTYGAAMARAADGDLRCASIPD 301
Query: 411 VRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKD-------VTEAINQ 463
V + + ++ +F E + +++ A+ +A S+D + +A Q
Sbjct: 302 VENDA------MAAIAASFNEMLDETETTIREIQAVASDVAAASEDADAGVVEIEDASGQ 355
Query: 464 VNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQK 523
V+E +Q+++ A Q+E + ++ M ++ EE + + + E ++A +G Q
Sbjct: 356 VSETVQEIAAGADEQREKLETVSGEMTDLSAAIEEVAASAHSVADS-HETAAVAGDGEQT 414
Query: 524 GDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARA 583
++A+ +Q + + V + + I EI ++I+ +AEQTN+LALNA IEAARA
Sbjct: 415 AEQAIADSRTVQSAVESTVQNVEALDDQLAEISEIVDLISDVAEQTNMLALNANIEAARA 474
Query: 584 GEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETL 643
++G GFAVVA E++ LAEE++ +A +I++++ I +++ V + + ++ +
Sbjct: 475 DKSGDGFAVVADEVKDLAEETRASAGDIEALVADIDAQMQATVTEARTADESVQDAISAV 534
Query: 644 RDTIGYLANIATLLQET----SERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASA 699
+ +A +ET E TT +Q T+E A+ + ++ + T A A
Sbjct: 535 DAVVDAFGTVAENAEETDTGVQEISTTTDDQAASTEE----AVSMIAEVSDISTATAADA 590
Query: 700 EEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
++ S+A EQQT A + L++ R++ +V F V
Sbjct: 591 QQASTAAEQQTTAAATISENTAALREQADRLQGLVSTFDV 630
>gb|AAG19266.1| (AE005022) Htr4 transducer; Htr4 [Halobacterium sp. NRC-1]
Length = 778
Score = 149 bits (372), Expect = 1e-34
Identities = 135/541 (24%), Positives = 227/541 (41%), Gaps = 109/541 (20%)
Query: 270 YKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKI 329
Y + T W+V VP S+ G A++ A N +++I G A+ ++ +A+ +
Sbjct: 268 YAPVDGTPWVVTLHVPTSEAYG---LASNMAEN---VLLILGIALAGLVFIALT-----L 316
Query: 330 ASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAF------------ 377
T+ L L+ A AL G EY + DE+G L +AF
Sbjct: 317 GRGTVRALNDLEAKAAALERG------EYDTDLDVARVDELGRLFEAFASLRDTVQARIR 370
Query: 378 -------------------------------------EAVSKDLVGTLNAISKKLERLAE 400
EA ++ L T A S+ + A
Sbjct: 371 DANEQQVDAEAARSEAEAAQADAEAAQAEAEAAREESEAQARRLETTAEAFSETMRAYAA 430
Query: 401 GDLSNGLTVEV-RGELRDIIEDIRSVTETFRESIGSLVEMAN-------DLEKRANALAQ 452
GDL+ L +V + + DI + +I +V A+ D A A+ Q
Sbjct: 431 GDLTVRLDADVEQAAMADIAAAFNEMAADMEATIADVVAFADEVATASTDASDSAAAVEQ 490
Query: 453 VSKDVTEAINQVNEA-------IQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEE 505
+DV++A+ ++ + ++ V+ E TI E+ VA+TS+ + ++
Sbjct: 491 TGRDVSDAVGRIRDRAADQRDQLEAVASETDEMSATIEEVAASADQVAETSQRAAALGDD 550
Query: 506 FSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSI 565
A + V+ E + A ++D++ MS IE V+ IT I
Sbjct: 551 GQAAAQDAVAQLEEIEDETQAAATAVDDLEAKMSEIETIVA--------------AITDI 596
Query: 566 AEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEA 625
AEQTN+LALNA IEAARA + G GFAVVA E++ LA+ESK +A I++++ ++ + + +
Sbjct: 597 AEQTNMLALNANIEAARADQDGDGFAVVADEVKDLADESKASAAEIEALVAEVRAQTETS 656
Query: 626 V-------EATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEV 678
V E +GV + E+ +L + G +A T +QE S M V
Sbjct: 657 VAAMDRIQERVSDGVETVSETERSLSEIAGRIAEADTGVQEISNAMDD-------QAASV 709
Query: 679 DKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFK 738
A+ ++AA EET AE + A +Q + ++ + L + +R+ +F+
Sbjct: 710 SDVTTAVGDVAALGEETATEAESTADAAAEQATTLSDVAAQTETLAEHAVALREHAAQFE 769
Query: 739 V 739
V
Sbjct: 770 V 770
>pir||H75002 methyl-accepting chemotaxis protein PAB1026 - Pyrococcus abyssi
(strain Orsay) >gi|5458976|emb|CAB50462.1| (AJ248288)
METHYL-ACCEPTING CHEMOTAXIS PROTEIN [Pyrococcus abyssi]
Length = 374
Score = 149 bits (372), Expect = 1e-34
Identities = 88/315 (27%), Positives = 165/315 (51%), Gaps = 8/315 (2%)
Query: 420 EDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEA----INQVNEAIQQVSIEA 475
E ++ V + G + + + +E + + + + E + +VNE + +++ E
Sbjct: 59 EVLKKVAFRLKRGQGKKINVKDKIENLKEVIENLEEKIGEVKLGDLGEVNELVSRLNNEN 118
Query: 476 QRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQ 535
+ I E+ D ++ ++ EE ++ S E S+A +G Q D ++ I
Sbjct: 119 VK----IAEVNDYIQTLSAGIEEMNVQAQQLSDFALESASMAEKGRQISDNVALKVSRIS 174
Query: 536 HMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQ 595
+ + V +AE S+ I +I VI+SIA QTNLLALNA+IEAARAGEAGRGFAVVA+
Sbjct: 175 ETSREMSDAVRILAEYSKKINDIVYVISSIASQTNLLALNASIEAARAGEAGRGFAVVAE 234
Query: 596 EIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIAT 655
+R+LA+ SK++A+ I+++I+++ + I ++A +E V V E E +++ I +IA
Sbjct: 235 NVRELADRSKKSAEEIRNLIEEMQENINRVIQAIQENVRVTEEVKEAIQNLIAAFDDIAR 294
Query: 656 LLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEE 715
ET+ + + E I V + +++++ + A +++ I + E
Sbjct: 295 RANETANMVKELSEGIDEQANSVQMLVDRIDSISKDVSDNLNFATQLTDTISGSLEKLNE 354
Query: 716 LRRAAQELKDMVGRM 730
++ +LK+ + R+
Sbjct: 355 VKEEITKLKENIDRI 369
>gb|AAD13223.1| (AF100302) methyl-accepting chemotaxis protein [Pseudomonas putida]
Length = 538
Score = 148 bits (371), Expect = 1e-34
Identities = 96/358 (26%), Positives = 169/358 (46%), Gaps = 28/358 (7%)
Query: 382 KDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMAN 441
+ ++ L + R+A GDLS + V R E+ D+ + ++++ R ++ + A
Sbjct: 209 RSIIHPLTTLKDAAARVALGDLSQSIQVSGRNEVTDVQQSVQAMQANLRNTLQDIQGSAA 268
Query: 442 DLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVR 501
L A L ++ + I++ N+ +Q + ++E+ D + S E++
Sbjct: 269 QLAAAAEELQTATESTAQGIHRQNDEMQMAATAVTEMSAAVDEVADNANRTSNASHEAM- 327
Query: 502 AMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNV 561
+A+ G ++ + I+ + ++ TV ++AE + NI + +V
Sbjct: 328 -------------DLADGGRKQVMLTRETIDRLSGKLNETTRTVFRLAEEASNIGRVLDV 374
Query: 562 ITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDE 621
I +IAEQT LLALNAAIEAA AGEAGRGFAVVA E+R LA+ ++ + I+ +I I
Sbjct: 375 IRAIAEQTKLLALNAAIEAAHAGEAGRGFAVVADEVRNLAQRTQTSTQEIERMISAIQ-- 432
Query: 622 IKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKA 681
T+EGV + +S E + A T+ E + +T + E+I
Sbjct: 433 -----SVTQEGVRDVQQSCE-------FAARSQTMSSEADQALTLIAERITEINGMNLVI 480
Query: 682 LRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
A E A A E + +S EQ TA +++ A++EL + + +V +F +
Sbjct: 481 ASAAEEQAQVAREVDRNLVAISDISEQSTAGVQQTSEASEELARLAANLNNLVNRFSM 538
>pir||F75590 methyl-accepting chemotaxis protein - Deinococcus radiodurans
(strain R1) >gi|6460726|gb|AAF12431.1|AE001863_56
(AE001863) methyl-accepting chemotaxis protein
[Deinococcus radiodurans]
Length = 758
Score = 148 bits (370), Expect = 2e-34
Identities = 126/454 (27%), Positives = 223/454 (48%), Gaps = 75/454 (16%)
Query: 315 GFVIIVAILVVIYK-IASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGAL 373
G +++A+++++ + + + L PLE+L A++ LA G L ++ DE G L
Sbjct: 345 GLALLLALVLLVNRALLRSILRPLEQLTSASKQLASGNLAV------KLPVTSNDEFGTL 398
Query: 374 IQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFR--- 430
+F + L +A + ER+ L N + G+ D+ DI T R
Sbjct: 399 ATSFNEAATQL--RASAERTEQERVEAQRLQNNI-----GQFLDVTMDIAEGDLTKRGVV 451
Query: 431 --ESIGSLVEMANDL-EKRANALAQV----------SKDVTEAINQVNEAIQQVSIEAQR 477
+ +G++V+ N + ++ A L QV SK + + + Q + EAQR
Sbjct: 452 TEDILGNVVDSINLMTDELAATLQQVQAASASVSGGSKQMLGTTEAIQQGAQLTAAEAQR 511
Query: 478 QQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKR----IED 533
E +++IT +R +AQ ++ S + E A SQ+G EAL+ +++
Sbjct: 512 VAEQVSQITATIRQMAQNAQTSAQTARE-----------ALLASQQGQEALQETLGGMQN 560
Query: 534 IQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVV 593
I+ + ++ + + + + S I+EI + I+ IA +TNLLALNA++EAA AG+AG F V
Sbjct: 561 IRREVQQVSKRIKTLGDRSLEIQEIVDTISQIARRTNLLALNASVEAAGAGDAGGRFGAV 620
Query: 594 AQEIRKLAEESKQA----ADNIKSIIDKITDEIKEAVEATKE---GVSVIGESSETLRDT 646
A EIR+LA S QA A IKS+ ++ D I EA E T+E G + G + + L+D
Sbjct: 621 ADEIRQLATTSAQATTRIAGLIKSVQAEVQDVIVEAEEGTREVEQGYRIAGSAGQRLQD- 679
Query: 647 IGYLANIATLLQETSERMTTVKEQI-VRTQEEVDKALRALENLAASAEETTASAEEVSSA 705
+ E +ER + E I TQE+V S E A+ ++++
Sbjct: 680 ----------IGELTERSAQLAESIAASTQEQVQ-----------SVERVNAAVQQIAEV 718
Query: 706 IEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
++ +A+++ R AQ+L+D+ ++ + +F++
Sbjct: 719 AQRSESAVQQGRSTAQQLEDLARQLDTSLARFRL 752
>pir||C83440 probable chemotaxis transducer PA1646 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947615|gb|AAG05035.1|AE004592_6 (AE004592) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 652
Score = 148 bits (369), Expect = 3e-34
Identities = 99/339 (29%), Positives = 178/339 (52%), Gaps = 27/339 (7%)
Query: 396 ERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSK 455
+R+AEGDL+ + E R E+ ++ +R++T + R + L + + + AL+ V+
Sbjct: 337 QRIAEGDLAVRVDSERRDEVGQLMAAMRAMTGSLRGIVSQLQDGVGRIAGASEALSGVTT 396
Query: 456 DVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVS 515
I+ +QV+ + T++E VA +EE+ A E G V+
Sbjct: 397 RTRLGIDSQRAETEQVATAMNQMAATVHE-------VAHNAEEAAGAAESADGKVSV--- 446
Query: 516 IANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALN 575
G + + L+RIE + + +V ++ S+ I + +VI S+AEQTNLLALN
Sbjct: 447 ----GQEVVRQTLERIERLAEAVRAATASVEALSADSQRIGSVLDVIKSVAEQTNLLALN 502
Query: 576 AAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSV 635
AAIEAARAG+ GRGFAVVA E+R LA ++Q+ I+++I + + ++AV+ + +
Sbjct: 503 AAIEAARAGDQGRGFAVVADEVRALARRTQQSTAEIETLIGALQNGTQQAVQRMQRSHQL 562
Query: 636 IGESSETLRDTIGYLANIAT---LLQETSERMTTVKEQIVRTQEEVDKALRALENLAASA 692
+ +S + T L NIAT L+Q+ ++++ EQ EE+++++ A+ +
Sbjct: 563 VDQSVDDALQTEAALGNIATAVALIQQMNQQIAAASEQQSAVAEEINRSVTAIREV---- 618
Query: 693 EETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMR 731
A++ + A++ ++ E+L +EL+ MV R
Sbjct: 619 ------ADQSAQAMQSTASSSEQLAELGRELQGMVRHFR 651
>gb|AAC04467.1| (U33210) methyl accepting chemotaxis homolog [Treponema denticola]
Length = 644
Score = 146 bits (366), Expect = 6e-34
Identities = 139/543 (25%), Positives = 229/543 (41%), Gaps = 87/543 (16%)
Query: 105 FKKIKELNKDVSYVYFGDEEGHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRD 164
F ++ + ++ +Y G G +E +G+DPR RPWY A G +I P
Sbjct: 128 FVRMDKNYEEFKEIYMGTRWGGFVSSLSEEDEQGFDPRTRPWYKAAAAANGEVIITPVYI 187
Query: 165 AAT---GQWVITYAVPVY-VNGQFKGVIGLDVFVSTLLNETKKIKLGKTGYIAIIDQNGM 220
+ G V+ A + G F G IGLD+ ++ L + I++GKTGY ++ +G+
Sbjct: 188 STISTGGSPVVALAQAIKDPEGAFLGCIGLDLNLTDLASRVSSIRIGKTGYCMLMQNDGL 247
Query: 221 TLVHPNEEFINKLNIFQVPELKDLA--DELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGW 278
L P N L I + + L D++K EG G L W
Sbjct: 248 ILADPKHADSN-LKILKETGILPLTKIDKMK----EGSAFIMLDGKTWKVSVFSLPEVNW 302
Query: 279 IVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLE 338
V + ++I LS T + M ++I + V+Y
Sbjct: 303 KVALFIEQNEI----LSLFYTLLKNM------------ILIGLFMFVLY----------- 335
Query: 339 KLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERL 398
+ + G LK RYL+R EI ++
Sbjct: 336 ---FTLAFIFAGALK---------RYLKRLEI-----------------------VFGKI 360
Query: 399 AEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVT 458
A GDL++ L V+ E+ I+ ++ + E I L + A+ + + L+ ++
Sbjct: 361 ASGDLTDRLAVKKNNEVGRIMMNLNTAIENNHTMICLLKDEADKMNSIGSQLSSSMEETA 420
Query: 459 EAINQVNEAIQQVSIEAQRQQE-------TINEITDGMRLVAQTSEESVRAMEEFSGAVT 511
AI Q+ E ++ V +A Q T+ +I + + + E ++ E S +T
Sbjct: 421 AAIKQIGENVKGVKEKAMSQAAGVTETVATVEQINGRLSRLVSSIEMQTESINESSVVIT 480
Query: 512 EVVSIANEGSQKGDEALKRIEDIQHMMS-------RIEETVSKVAEMSRNIEEITNVITS 564
+ + ++ D+ + I+ + E V ++AE S ++ E + +I +
Sbjct: 481 AMAENTVKIAKTLDQNNELIKTVYGQTKVGKDGARTANEIVKQIAEKSASLLEASQIIQN 540
Query: 565 IAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKE 624
IA QTNLLA+NAAIEAA AGE+G+GFAVVA EIRKLAE S I ++I + T+ I +
Sbjct: 541 IASQTNLLAMNAAIEAAHAGESGKGFAVVADEIRKLAEGSNLQGKQIAAVIKETTEIIHD 600
Query: 625 AVE 627
E
Sbjct: 601 ITE 603
>sp|Q48319|HTR6_HALSA HALOBACTERIAL TRANSDUCER PROTEIN VI >gi|11277604|pir||T48897
transducer protein VI (htp6, htD) [imported] -
Halobacterium salinarum >gi|1435134|emb|CAA64843.1|
(X95590) halobacterial transducer protein VI
[Halobacterium salinarum]
Length = 778
Score = 146 bits (365), Expect = 7e-34
Identities = 131/533 (24%), Positives = 223/533 (41%), Gaps = 93/533 (17%)
Query: 270 YKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKI 329
Y + T W+V VP S+ G A++ A N +++I G A+ ++ +A+ +
Sbjct: 268 YAPVDGTPWVVTLHVPTSEAYG---LASNMAEN---VLLILGIALAGLVFIALT-----L 316
Query: 330 ASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAF------------ 377
T+ L L+ A AL G EY + DE+G L +AF
Sbjct: 317 GRGTVRALNDLEAKAAALERG------EYDTDLDVARVDELGRLFEAFASLRDTVQARIR 370
Query: 378 -------------------------------------EAVSKDLVGTLNAISKKLERLAE 400
EA ++ L T A S+ + A
Sbjct: 371 DANEQQVDAEAARSEAEAAQADAEAAQAEAEAAREESEAQARRLETTAEAFSETMRAYAA 430
Query: 401 GDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEA 460
GDL+ L +V + + F E + D + A+ +A S D +++
Sbjct: 431 GDLTVRLDADVEQAA------MADIAAAFNEMAADMEATIADAGRFADEVATASTDASDS 484
Query: 461 INQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEG 520
V + + VS R ++ + D + VA ++E +EE + + +V +
Sbjct: 485 AAAVEQTGRDVSDAVGRIRDRAADQRDQLEAVASETDEMSATIEEVAASADQVAETSQRA 544
Query: 521 SQKGDE-------ALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLA 573
+ GD+ A+ ++E+I+ V + IE I IT IAEQTN+LA
Sbjct: 545 AALGDDGQAAAQDAVAQLEEIEDETQAAATAVDDLEAKMSEIETIVAAITDIAEQTNMLA 604
Query: 574 LNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAV------- 626
LNA IEAARA + G GFAVVA E++ LA+ESK +A I++++ ++ + + +V
Sbjct: 605 LNANIEAARADQDGDGFAVVADEVKDLADESKASAAEIEALVAEVRAQTETSVAAMDRIQ 664
Query: 627 EATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALE 686
E +GV + E+ +L + G +A T +QE S M V A+
Sbjct: 665 ERVSDGVETVSETERSLSEIAGRIAEADTGVQEISNAMDD-------QAASVSDVTTAVG 717
Query: 687 NLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
++AA EET AE + A +Q + + ++ + L + +R+ +F+V
Sbjct: 718 DVAALGEETATEAESTADAAAEQASTLSDVAAQTETLAEHAVALREHAAQFEV 770
>gb|AAD13198.1| (AF096317) putative methyl-accepting chemotaxis protein
[Desulfovibrio gigas]
Length = 649
Score = 146 bits (365), Expect = 7e-34
Identities = 113/375 (30%), Positives = 192/375 (51%), Gaps = 37/375 (9%)
Query: 344 AQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDL 403
AQALA G L KQ+ +RDEIG + +A AV+ + ++ KL++L+ GDL
Sbjct: 227 AQALAVGDLT------KQLTIRQRDEIGQMAEAMRAVA----AAEHDVAGKLDKLSRGDL 276
Query: 404 SNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMA-----------NDLEKRANALAQ 452
G+ V R E ++ I S+ R+ + ++A ++ ++ A+A+
Sbjct: 277 --GIEVMPRSEQDTLMRAIGSIVLAERDVAEKMKQVAEGDLRIKVAPRSEQDELVRAIAE 334
Query: 453 VSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTE 512
+ + VT+ +++V Q V+ + + ++ G A + E+ +MEE S ++ +
Sbjct: 335 MIERVTQIVDEVRTGAQNVASGDEEMSASSETLSQGASEQAASVEQCSSSMEEMSSSINQ 394
Query: 513 VVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLL 572
A Q G A K +D + + TV+ + E++ I ++I IA QT+LL
Sbjct: 395 N---AENARQTGSIASKAAQDAKESGEAVHNTVAAMKEIAGKI----SIIEEIARQTDLL 447
Query: 573 ALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEG 632
ALNAA+EAARAGE GRGFAVVA E+RKLAE S+ AA I + T + A ++
Sbjct: 448 ALNAAVEAARAGEHGRGFAVVASEVRKLAERSQTAAAEINKLSSTSTAVAERAGTLLEKL 507
Query: 633 VSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASA 692
V I ++++ +++ IA QE + V + + + V + A E LA++A
Sbjct: 508 VPDIQKTADLVQE-------IAATSQEQNSGAGQVNLALQQLDQVVQQNASASEELASTA 560
Query: 693 EETTASAEEVSSAIE 707
EE +A AE++ +A++
Sbjct: 561 EELSAQAEQLQAAMD 575
>gb|AAG19381.1| (AE005032) Htr15 transducer; Htr15 [Halobacterium sp. NRC-1]
Length = 636
Score = 146 bits (365), Expect = 7e-34
Identities = 93/340 (27%), Positives = 166/340 (48%), Gaps = 18/340 (5%)
Query: 388 LNAISKKLERLAEGDLSNGLTVEVRG----ELRDIIEDIRSVTETFRESIGSLVEMANDL 443
++ +S ++ L+ G LS + E G +L ++ + + + F +G + +L
Sbjct: 306 VDELSTTIDALSSGQLSKRASFEHEGIINEQLVSVVSALNGMADQFERLVGQVDGQTQEL 365
Query: 444 EKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAM 503
+ D+ + ++ NE + + E + ++ E+ VA +E++ A
Sbjct: 366 ADTIERATADATDIADTVSSQNEMLSSAANEMENFSASMQEVAASSDQVASAAEQAQDAA 425
Query: 504 EEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVIT 563
E SG E S+ ++A + DI + E+VSK+ IE++ VI
Sbjct: 426 E--SGL---------EASEGANQATNEVIDIS---DDLMESVSKLESRMDEIEDVVEVIA 471
Query: 564 SIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIK 623
+A+QTNLLALNA IEAARAGEAG GFAVVA E+++LA E+++ + I I + +
Sbjct: 472 EVADQTNLLALNANIEAARAGEAGSGFAVVADEVKELANETREHTERIAGSISDVQQQAN 531
Query: 624 EAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALR 683
E V A +E I + + + D + L IAT + E + +T V V+ +
Sbjct: 532 ETVLAVEESHEQIHRAGDEIDDALTALEEIATSVDEAATGITEVARANDEQASTVEDVIV 591
Query: 684 ALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQEL 723
+E++ AEE A+++ + SA ++Q+ A+ +L +L
Sbjct: 592 TIEDVQQQAEEAAAASDRIVSATQEQSTAVSQLSERVDKL 631
>sp|P33955|HTR1_HALSA SENSORY RHODOPSIN I TRANSDUCER (HTR-I) (METHYL-ACCEPTING PHOTOTAXIS
PROTEIN I) (MPP-I) >gi|280349|pir||S28466 transducer
rhodopsin - Halobacterium salinarium
>gi|2648028|emb|CAA48578.1| (X68591) halobacterial
transducer rhodopsin (Htr) [Halobacterium salinarum]
Length = 536
Score = 146 bits (364), Expect = 1e-33
Identities = 109/506 (21%), Positives = 230/506 (44%), Gaps = 72/506 (14%)
Query: 290 TGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAE 349
T +L N++ ++ G A G + + +I A T+ ++++ + +A
Sbjct: 21 TAGLLVGVGVTTNEVPSTIVAGIA-GLLTLGSIN------AGETVGRIKEIGAQTERVAN 73
Query: 350 GRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTV 409
G L+Q ++ DE G+L + E + + L G LN + + L E + T
Sbjct: 74 GNLEQ------EVTSTRTDEFGSLADSIEQMRQSLRGRLNEMERTRSDLEETQTESETTR 127
Query: 410 E----VRGELRDIIEDIRSVTETFRES--------------------------------- 432
E + E + + R + T+++S
Sbjct: 128 EESEQAKQEAQSAEREARELAATYQDSSNRDGETMESSATGDFTQRVDVDTDPEAMETFG 187
Query: 433 -------------IGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQ 479
+ ++ +A+++E + +++ S D+ + EA+ ++ + Q+
Sbjct: 188 TAFNQMMDDLQATVRTVTTVADEIEAKTERMSETSADIEASAGDTVEAVSKIESQPNDQR 247
Query: 480 ETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMS 539
++ D ++ V+ ++EE +++ + +V + ++ AL + I+ +
Sbjct: 248 TELDSAADDVQQVSASAEEIAATIDDLASRSEDVATASDAARDSSKSALDEMSSIE---T 304
Query: 540 RIEETVSKVAEMSRNIEEIT---NVITSIAEQTNLLALNAAIEAARAG--EAGRGFAVVA 594
+++ V +V + + EIT +VIT I EQTN+LALNA+IEAARAG G GF+VVA
Sbjct: 305 EVDDPVGQVEHLRDQVAEITDIVDVITDIGEQTNMLALNASIEAARAGGNADGDGFSVVA 364
Query: 595 QEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIA 654
E++ LAEE++ A+ I ++++K+T + ++ + + + + SET+ T+ ++ IA
Sbjct: 365 DEVKDLAEETQDRANEIAAVVEKVTAQTEDVTASIQHTRTRVESGSETVESTLLHIRTIA 424
Query: 655 TLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIE 714
+ E S + ++ E V ++E +A +++TTA A + S + Q + E
Sbjct: 425 DSISEVSNSIDEIQRTTSEQAETVQSTATSVERVAGLSDDTTALASDAESPVIGQRESAE 484
Query: 715 ELRRAAQELKD-MVGRMRQIVGKFKV 739
E+ + ++ ++ V +++ V F V
Sbjct: 485 EIAASLEQFQNTAVEQLQSRVASFTV 510
>gi|10954729 hypothetical chemoreceptor gene~similar to orf2 gene in pTi15955
[Agrobacterium rhizogenes] >gi|8918729|dbj|BAA97794.1|
(AB039932) hypothetical chemoreceptor gene~similar to
orf2 gene in pTi15955 [Agrobacterium rhizogenes]
>gi|10567393|dbj|BAB16202.1| (AP002086) hypothetical
chemoreceptor gene~similar to orf2 gene in pTi15955
[Agrobacterium rhizogenes]
Length = 723
Score = 146 bits (364), Expect = 1e-33
Identities = 125/462 (27%), Positives = 222/462 (47%), Gaps = 53/462 (11%)
Query: 282 ATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAIL----VVIYKIASNTLAPL 337
A+ ++D IL D Q + V V L V Y + +P+
Sbjct: 263 ASASMNDAWNKILLFADIQRGHASAAQDQAQTISLVTTVIALLFGCVAGYLLLRTIKSPI 322
Query: 338 EKLKYAAQALAEGRLKQVSEYLKQIRYLE-RDEIGALIQAFEAVSKDLVGTLNAISKKLE 396
E L + +A+A G+L + +I +E RDEIG + +A + + + +K+
Sbjct: 323 EALTASMKAVASGKLDE------KIGSVETRDEIGEMARALDVFRNNAL-------EKIR 369
Query: 397 RLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVE-MANDLEKRANA------ 449
E + S L + R E +D+R + +I + VE +A+ L K A+
Sbjct: 370 VENEAEQSRSLARQQRQE-----DDLRKTRDA--AAISNAVEAVASGLHKLASGDLTVTI 422
Query: 450 -------LAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRA 502
L Q+ +D ++ + ++Q+ + Q N++ + +A+ +E+ +
Sbjct: 423 GRPLDGELDQLRQDFNASMLHLQATMRQIRDNVEMIQGNGNQMAEAAEDLAKRTEQQAAS 482
Query: 503 MEEFSGAVTEVVSIANEGSQKGDEALKRI-------EDIQHMMSRIEETVSKVAEMSRNI 555
+EE + AV E+ +++ +A + + +D +++ + + ++ E SR I
Sbjct: 483 LEETAAAVDEITVTVRSSAERAKDADQIVRQAKQSADDSAIVVNNAIDAMGRIEEASRQI 542
Query: 556 EEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSII 615
E+IT VI IA QTNLLALNA +EAARAGEAG+GFAVVAQE+R+LA+ S +AA IK +I
Sbjct: 543 EQITGVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSAKAAKEIKVLI 602
Query: 616 DKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQ 675
+K T E+ +E +V+ + S + ++ IA + S + V T
Sbjct: 603 NKSTAEVNTGSHLVQETGAVLAKISTQIVTISQHVETIARGSHDQSSALQGVNS----TV 658
Query: 676 EEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELR 717
++D + ++ AA EETTA++ E++S + A +++ R
Sbjct: 659 NQMD---QMTQHNAAMVEETTAASRELASQADSLLALVQQFR 697
>pir||T44978 transducer protein hemAT [validated] - Halobacterium salinarum
>gi|1654421|gb|AAB17881.1| (U75436) transducer HtB
protein [Halobacterium salinarum]
Length = 489
Score = 145 bits (362), Expect = 2e-33
Identities = 99/314 (31%), Positives = 167/314 (52%), Gaps = 27/314 (8%)
Query: 422 IRSVTETFRESIGSLVEMAN----DLEKRANALAQVSKDVTEAINQVNEAIQ-QVSIEAQ 476
I S + + I S E+AN +E ++L S+DV E + + QV A
Sbjct: 190 IDSYAQRLHDEIDSRQELANAVATHVEAPLSSLEATSQDVAERTDTMRARTDDQVDRMAD 249
Query: 477 RQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQH 536
+E I+ ++ + VA T+++ R E+ ++A +G D+AL + DI
Sbjct: 250 VSRE-ISSVSASVEEVASTADDVRRTSEDAE-------ALAQQGEAAADDALATMTDIDE 301
Query: 537 MMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQE 596
+ V ++ E + ++E +T VI IAEQTN+LALNA+IEAARAGEAG GFAVVA E
Sbjct: 302 ATDGVTAGVEQLGERAADVESVTGVIDDIAEQTNMLALNASIEAARAGEAGEGFAVVADE 361
Query: 597 IRKLAEESKQAADNIKSIIDKITDEIKEAVEATK-------EGVSVIGESSETLRDTIGY 649
++ LAEES++ + ++ +++++ E +E V+ EGV + E+ ETL++
Sbjct: 362 VKALAEESREQSTRVEELVEQMQAETEETVDQLDEVNQRIGEGVERVEEAMETLQEITDA 421
Query: 650 LANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQ 709
+ + A+ +QE S T EQ V T+E + ++ + A E A+ ++++ A +QQ
Sbjct: 422 VEDAASGMQEVS---TATDEQAVSTEEVAE----MVDGVDDRAGEIAAALDDIADATDQQ 474
Query: 710 TAAIEELRRAAQEL 723
+EE+R +L
Sbjct: 475 VRTVEEVRETVGKL 488
>gb|AAG34155.1|AF312877_1 (AF312877) methyl-accepting chemotaxis protein McpV [Sinorhizobium
meliloti]
Length = 604
Score = 145 bits (362), Expect = 2e-33
Identities = 145/565 (25%), Positives = 255/565 (44%), Gaps = 72/565 (12%)
Query: 198 LNETKKIKLGKTGYIAIIDQNGMTLVHPNEEFINKLNIFQV--PELKDLADELKK---GK 252
L + ++ +GY + D + ++HP + ++ ++ Q P K L E K
Sbjct: 77 LEAIRAMRYQDSGYFWVNDMHPKMVMHPIKPELDGADLTQNKDPNGKFLFVEFVKTVQAH 136
Query: 253 DEGYVLYTF------QGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKM 306
+G+V Y + + + K + GW+V V D+ A+ + +
Sbjct: 137 GKGFVDYYWPKPGADEPVLKYSHVAGFEPWGWVVGTGVYADDLA---------AMFRERA 187
Query: 307 IVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLE 366
+ G V + AIL+ I + + P+EKLK + +A+A+ L + +
Sbjct: 188 WQMAGILVAAAL--AILMAALAIVRSVVRPIEKLKVSMRAIADEDLSS------DVPETD 239
Query: 367 R-DEIGALIQAFEAVSKDLVGTLNAISKKLE-RLAEGDLSNGLTVEVRGELRDIIEDIRS 424
R DEIG + +K LV +++ ++LE R E + + L E RG +
Sbjct: 240 RADEIGQM-------AKVLVVLRDSVRERLELRSREAEQQDRLDAERRGHEERQRTTAAT 292
Query: 425 VTETFRESIGSLVEMAND-----LEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQ 479
E +L +AN + + A A++ D A+ + + I +S +
Sbjct: 293 QAEAMETLGAALERLANGDLTAAVARIAPEYAKLKDDFNTAVAALRDVIGAISRSTEIVH 352
Query: 480 ETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMS 539
+ +I++ +++ +E+ A+EE + A+ E+ S S + EA +++ + +
Sbjct: 353 GSAADISEAANNLSRRTEQQAAALEETAAALDEITSTVRHASGRALEARDMVDETKASAA 412
Query: 540 RIEETV-------SKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAV 592
+ + V ++ S I +I VI IA QTNLLALNA +EAARAGEAGRGFAV
Sbjct: 413 KSGDIVRNAIDAMGRIEASSSRISQIIGVIDEIAFQTNLLALNAGVEAARAGEAGRGFAV 472
Query: 593 VAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLAN 652
VAQE+R+LA+ S AA IK++I V +G E +R T L
Sbjct: 473 VAQEVRELAQRSAGAAKEIKALIG--------------TSVKEVGAGVELVRSTGDALME 518
Query: 653 IATLLQETSERM----TTVKEQIVRTQEEVDKALRALENL----AASAEETTASAEEVSS 704
I L+ +E++ T +EQ Q EV+ A+ +++ + AA EETTA+++ ++
Sbjct: 519 IDALVNRVNEQVAAIATAAREQATGLQ-EVNTAVNSMDQMTQQNAAMVEETTAASQTLAQ 577
Query: 705 AIEQQTAAIEELRRAAQELKDMVGR 729
+ A +E+ R + + GR
Sbjct: 578 ESRELKALLEQFRLEERGAQPAYGR 602
>pir||G82490 methyl-accepting chemotaxis protein VCA0176 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657567|gb|AAF96089.1| (AE004358) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 644
Score = 144 bits (360), Expect = 3e-33
Identities = 99/354 (27%), Positives = 176/354 (48%), Gaps = 30/354 (8%)
Query: 388 LNAISKKLERLAEGDLSNGLTVEVRG--ELRDIIEDIRSVTETFRESIGSLVEMANDLEK 445
+N I+K+ L GD +EV+G E+ + + E +SI + + + +L+
Sbjct: 319 INQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLSKGFNGFIEKIHQSIKDVAQTSRELQV 378
Query: 446 RANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEE 505
A +++ + + Q + QV + TI+EI A+T+ ++
Sbjct: 379 AAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGATISEIASNAATAAETANQA------ 432
Query: 506 FSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSI 565
SG + ++ N K EA+ R+ H + + V ++A ++ I I + I I
Sbjct: 433 -SGNADQGRNVVN----KAKEAISRLA---HDIENTGKVVEQLASTTQEIGSILDAIRGI 484
Query: 566 AEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEA 625
+EQTNLLALNAAIEAARAG+ GRGFAVVA E+R LA + + + I+ +I+++ ++ K A
Sbjct: 485 SEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQKMINQLQNDAKNA 544
Query: 626 VEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRAL 685
V A G +V + + + L +I+ + + S+R T Q+ EE + +
Sbjct: 545 VSAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNT----QVATATEEQSTVVHTI 600
Query: 686 ENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+ EE+++ E T+ EEL A++ L+++ GR+ ++VG FK+
Sbjct: 601 NQ----------NIEEINAINEVTTSTAEELADASKSLRELSGRLDKLVGNFKL 644
>gb|AAG19989.1| (AE005080) Htr2 transducer; Htr2 [Halobacterium sp. NRC-1]
Length = 764
Score = 143 bits (358), Expect = 5e-33
Identities = 90/371 (24%), Positives = 181/371 (48%), Gaps = 22/371 (5%)
Query: 375 QAFEAVSKDLVGTLNAISK-KLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESI 433
+A E+ + D L A++ L R + + + L D+++DI + S+
Sbjct: 397 RALESAAADYEEALTAVADGDLTRRVDASRDHDAMARIGHALNDMLDDIET-------SV 449
Query: 434 GSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVA 493
+ ++ + A + + D +A V+ A+ ++S A Q + ++E+ + ++
Sbjct: 450 AAATAFSDHVSDAAQRVEADAGDAIDAGTDVSTAVDEISDGATEQTDRLHEVAGEVDDLS 509
Query: 494 QTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSR 553
++EE + + + S ++G Q ++A++ ++D+ + + +
Sbjct: 510 ASAEEVAETVASLADTAGQAASAVDDGRQATEDAVETMDDVADDAEAAADAMDALDSEMA 569
Query: 554 NIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKS 613
+I EI +VI IA+QTN+LALNA+IEAAR G G GFAVVA E++ LAEES+ AA++I+S
Sbjct: 570 DIGEIVDVIADIADQTNMLALNASIEAARTGADGDGFAVVADEVKTLAEESRDAAEDIES 629
Query: 614 -------IIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTT 666
+ + DE++ + +G + +G+++ L D + ++A+ T E
Sbjct: 630 RLLALQGQVSDVADEMRATSDTVSDGRATVGDAATALDDVVSFVADTDTAAGE------- 682
Query: 667 VKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDM 726
++ R + A++ +A ++ET A A V+ + QT + + AA +L D
Sbjct: 683 IRAATDRQAHAASRVASAVDEVAGISQETAAQATAVADSAATQTDTLSSVDDAAADLADR 742
Query: 727 VGRMRQIVGKF 737
+ ++ +F
Sbjct: 743 AAALDDLLAEF 753
>pir||T44849 transducer protein car [validated] - Halobacterium salinarum
(strain S9) >gi|4469246|emb|CAB38318.1| (AJ132321) Car
protein [Halobacterium salinarum]
Length = 452
Score = 143 bits (357), Expect = 6e-33
Identities = 92/326 (28%), Positives = 164/326 (50%), Gaps = 15/326 (4%)
Query: 409 VEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAI 468
V +R D++ V E + + E+ + E ++ + + +++E+I++V
Sbjct: 137 VPLRAPTGDVVGSF-GVVPDISEKVKNQRELHDLHETVSSNVGEHLSELSESIDEVGSFA 195
Query: 469 QQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEAL 528
++ A + E + + D + + T EE + EE S A A EG Q + A+
Sbjct: 196 EETEAFAGEEIERMEGVADEVSNQSATIEEIASSAEEVSQASQRAQDRATEGEQTAETAI 255
Query: 529 KRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGR 588
R+ +Q R+ +T+ + + + EI + I IA+QTN+LALNA+IEAARAGE G
Sbjct: 256 DRMGAVQESAERVNDTIDGLTSQADEMSEIIDAINDIADQTNMLALNASIEAARAGEKGE 315
Query: 589 GFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIG 648
GFAVVA E++ LAEES++ AD I+ + I E VE T + IG+++ + + I
Sbjct: 316 GFAVVADEVKSLAEESQERADEIEQM-------IVEMVETTDQTADRIGQTTTEIEEAI- 367
Query: 649 YLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQ 708
T ++ET + + +++ + T V + A ++ AAS E+ A+ +E + +
Sbjct: 368 ------TAVRETLDSLQEIRKAVDETATGVKEVAGATDDHAASTEQVAATTDEAVDKLTE 421
Query: 709 QTAAIEELRRAAQELKDMVGRMRQIV 734
++ L + A E D V + +V
Sbjct: 422 LEDRLDNLSQIASEQHDRVAEIEDMV 447
>sp|P71410|HTR2_HALSA SENSORY RHODOPSIN II TRANSDUCER (HTR-II) (METHYL-ACCEPTING
PHOTOTAXIS PROTEIN II) (MPP-II) >gi|11385312|pir||T44946
transducer protein htrII [validated] - Halobacterium
salinarum >gi|1527137|gb|AAC44369.1| (U62676) phototaxis
transducer II [Halobacterium salinarum]
Length = 765
Score = 142 bits (355), Expect = 1e-32
Identities = 89/371 (23%), Positives = 180/371 (47%), Gaps = 22/371 (5%)
Query: 375 QAFEAVSKDLVGTLNAISK-KLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESI 433
+A E+ + D L A++ L R + + + L D+++DI + S+
Sbjct: 398 RALESAAADYEEALTAVADGDLTRRVDASRDHDAMARIGHALNDMLDDIET-------SV 450
Query: 434 GSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVA 493
+ ++ + A + + D +A V+ A+ ++S A Q + ++E+ + ++
Sbjct: 451 AAATAFSDHVSDAAQRVEADAGDAIDAGTDVSTAVDEISDGATEQTDRLHEVAGEVDDLS 510
Query: 494 QTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSR 553
++EE + + + S ++G Q ++A++ ++D+ + + +
Sbjct: 511 ASAEEVAETVASLADTAGQAASAVDDGRQATEDAVETMDDVADDAEAAADAMDALDSEMA 570
Query: 554 NIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKS 613
+I EI +VI IA+QTN+LALNA+IEAAR G G GFAVVA E++ LAEES+ AA++I+S
Sbjct: 571 DIGEIVDVIADIADQTNMLALNASIEAARTGADGDGFAVVADEVKTLAEESRDAAEDIES 630
Query: 614 -------IIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTT 666
+ + DE++ + +G + +G+++ L D + ++A +T
Sbjct: 631 RLLALQGQVSDVADEMRATSDTVSDGRATVGDAATALDDVVSFVA-------DTDTAAGQ 683
Query: 667 VKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDM 726
++ R + A++ +A ++ET A A V+ + QT + + AA +L D
Sbjct: 684 IRAATDRQAHAASRVASAVDEVAGISQETAAQATAVADSAATQTDTLSSVDDAAADLADR 743
Query: 727 VGRMRQIVGKF 737
+ ++ +F
Sbjct: 744 AAALDDLLAEF 754
>sp|Q02755|MCPC_SALTY METHYL-ACCEPTING CHEMOTAXIS CITRATE TRANSDUCER (CITRATE
CHEMORECEPTOR PROTEIN) >gi|421247|pir||A47178
methyl-accepting transmembrane citrate/phenol
chemoreceptor Tcp - Salmonella typhimurium
>gi|154381|gb|AAA27231.1| (L06029) chemoreceptor
[Salmonella typhimurium]
Length = 547
Score = 142 bits (354), Expect = 1e-32
Identities = 95/356 (26%), Positives = 171/356 (47%), Gaps = 56/356 (15%)
Query: 384 LVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDL 443
L+ L I ++ +A+GDL++ + E R E+ + ++++ ++ ++ ++ + A+ +
Sbjct: 217 LLRPLQRIMAHIQTIADGDLTHEIEAEGRSEMGQLAAGLKTMQQSLIRTVSAVRDNADSI 276
Query: 444 EKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAM 503
A ++ S D++ Q A+++ + ++ T+ + TD R
Sbjct: 277 YTGAGEISAGSSDLSSRTEQQASALEETAASMEQLTATVRQNTDNAR------------- 323
Query: 504 EEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVIT 563
T + A+E ++KG ++ + T++ +AE S I +IT+VI
Sbjct: 324 -----QATGLAKTASETARKGGR----------VVDNVVSTMNDIAESSEKIVDITSVID 368
Query: 564 SIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIK 623
IA QTN+LALNAA+EAARAGE GRGFAVVA E+R LA S QAA IK +I+
Sbjct: 369 GIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVLIE------- 421
Query: 624 EAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALR 683
+V G + + E+ ET+++ + + R+T + +I +E K +
Sbjct: 422 NSVSRIDTGSTQVREAGETMKEIVNAVT-----------RVTDIMGEIASASDEQSKGI- 469
Query: 684 ALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
E+ + E+ S +Q + +EE AA L+D +RQ V F++
Sbjct: 470 ---------EQVAQAVSEMDSVTQQNASLVEESAAAAAALEDQANELRQAVAAFRI 516
>pir||B82215 methyl-accepting chemotaxis protein VC1313 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655802|gb|AAF94471.1| (AE004211) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 543
Score = 141 bits (353), Expect = 2e-32
Identities = 116/431 (26%), Positives = 202/431 (45%), Gaps = 60/431 (13%)
Query: 327 YKIASNTLAPLEKLKYAAQALAEGRLKQVSE-----YLKQIRYLERDEIGALIQAFEAV- 380
Y I +N+L+ E L+ + L G L Q + L ++ L + + I +
Sbjct: 145 YPILANSLSTFEALE-SDFTLLIGILHQAMDSNKVQILSSVKTLNSTSVASNIAILAIMV 203
Query: 381 ------SKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIG 434
++ + G L + K+ +A+GDLS + R SIG
Sbjct: 204 LMTWLLTRLICGPLAIVMKQSNAIAKGDLSQTMD---------------------RSSIG 242
Query: 435 SLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQ 494
+ ++L ANA Q+ +++ + I+++ A+ Q+S + + N+ DGM+
Sbjct: 243 N-----DELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQY 297
Query: 495 TSEESVRAMEEFSGAVTEVVSI--------------ANEGSQKGDEALKRIEDIQHMMSR 540
+ AM + AV +V + EG+++ ++ I+ + ++
Sbjct: 298 QITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGE 357
Query: 541 IEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKL 600
+TVS++ + S I + +VI SIA+QTNLLALNAAIEAARAGE+GRGFAVVA E+R L
Sbjct: 358 AGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTL 417
Query: 601 AEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQET 660
A ++ + I +II+K+ K+A +AT+ S I + E + + +I +E+
Sbjct: 418 AGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISI----EES 473
Query: 661 SERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAA 720
+ V QI E D + L+ + E +++EV+ +Q A EL + A
Sbjct: 474 IANIADVGTQIASACSEQDS---VADELSRNVENIHLASQEVAQGSQQTAQACRELTQLA 530
Query: 721 QELKDMVGRMR 731
L+D + R +
Sbjct: 531 VSLQDTLRRFK 541
>dbj|BAB04284.1| (AP001509) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 401
Score = 141 bits (351), Expect = 3e-32
Identities = 88/340 (25%), Positives = 172/340 (49%), Gaps = 7/340 (2%)
Query: 402 DLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEM-------ANDLEKRANALAQVS 454
+++NG+ V G+L + +++ S F + I + + + ++ ++ LA++
Sbjct: 37 EITNGMKEIVAGKLVNKMDEKSSNHAVFNQLIEFVSRVREKFLLFSKNVHEKGENLAEIG 96
Query: 455 KDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVV 514
+ TE + V AI +V +Q E M + Q E+ + E S +
Sbjct: 97 EYATEKADIVRAAIDEVGRGLNKQLVATEENAMSMEEMTQAIEDLSQRSNEISELSNTTL 156
Query: 515 SIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLAL 574
+ EGS+K ++L++++ + ++ + ++K+ E S I I VIT I+EQ NLLAL
Sbjct: 157 DLTQEGSEKLKDSLEKMKQLNQTINTTYDAINKLGEKSHEIGMIVKVITGISEQINLLAL 216
Query: 575 NAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVS 634
NA+IEAARAGE G+GFAVVA E+RKLAE+S+Q++ + +I+ I +E V + ++G
Sbjct: 217 NASIEAARAGEHGKGFAVVADEVRKLAEQSRQSSSEVSNIVKNIQEETGIVVGSMQKGTE 276
Query: 635 VIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEE 694
+++ T+ + I T + +E + + +E +A+ + E
Sbjct: 277 EFEDTNTTIVEVGAMFEKILTATRTIAENNGNSSASTEELSAASQQIMTTIEEIASISRE 336
Query: 695 TTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIV 734
+ EE++ + + + +E+L + A+ L + + Q++
Sbjct: 337 SVEMFEELTEISDDELSTLEKLVQEAKPLLALKQDVNQLL 376
>dbj|BAB05228.1| (AP001512) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 500
Score = 141 bits (351), Expect = 3e-32
Identities = 98/349 (28%), Positives = 188/349 (53%), Gaps = 48/349 (13%)
Query: 399 AEGDLSNGLTVEVRG---ELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSK 455
A+ + + L VE + +L D + + V ETF E + S +E D VS+
Sbjct: 168 AKVEADHALVVEEKKRTEQLLDRVAETSHVIETFSEKVLSEMEKTKD----------VSQ 217
Query: 456 DVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVS 515
++ A N+V++ ++Q S +ET+ + + +A+ SE + +
Sbjct: 218 ELVGAFNEVSQGVEQQSGNITEMKETMLKQDQAVSQMAEVSESTKK-------------- 263
Query: 516 IANEGSQKGDEALKRI----EDIQHMMSRIEETVSKVAEMSRNIEEITNVITS---IAEQ 568
+A +G +K +E+ + +++ + + ++ET++ + +S+ ++IT+++ + IAEQ
Sbjct: 264 LAKQGKEKSEESYTNMLGWSKEVTELQATVDETLTTILGLSKKSQQITSIVATVNQIAEQ 323
Query: 569 TNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSI---IDKITDEIKEA 625
TNLLALNAAIEAARAGE G+GF+VVA+E+RKLA++S+ A + +I I K+T I E
Sbjct: 324 TNLLALNAAIEAARAGEQGKGFSVVAEEVRKLAQDSQAATQQVNAILGDIQKMTGAISEK 383
Query: 626 V----EATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKA 681
+ T +GV E+L + +++IA+ + +R++ + + + EE+
Sbjct: 384 MMNSKTVTDKGVERATGMLESLTISEQMMSSIASDCELLDDRLSLLSKSQMSLTEEI--- 440
Query: 682 LRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRM 730
++ + +++ A EEV +++EQQ AI+ + + +EL + GR+
Sbjct: 441 ----VSVQSVTQQSQAMVEEVFASVEQQNQAIQNVTKQLEELNQLNGRL 485
>gb|AAC46419.1| (U81828) methylation accepting chemotaxis protein [Rhizobium
leguminosarum]
Length = 624
Score = 139 bits (347), Expect = 1e-31
Identities = 122/478 (25%), Positives = 209/478 (43%), Gaps = 57/478 (11%)
Query: 280 VVATVPLSDITGPILS--ATDTAINKMKMIVIQGFAVGFV---IIVAILVVIYKIASNTL 334
++A +PL D +G T+ ++ K+ V Q + + +I A+ V+ + +A +L
Sbjct: 142 IIAPLPL-DKSGKAAGYIVTNWSVEKIAAEVRQKVLISLLTQSVITALAVIAFLLAMRSL 200
Query: 335 A--PLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAIS 392
P+ + AL +G L Y + DEIG L +A E + + +
Sbjct: 201 VGRPIRVISERISALQKGDLASPVTYKEN-----GDEIGFLARALEVFRHEAIAKVEREQ 255
Query: 393 KKLERLAEGDLSNG----LTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRAN 448
E+ A D T E R ++ + + E + G DL +
Sbjct: 256 AAAEQSASLDAERARNALFTEEASNTQRLVMTALANSLEKL--AAGDFSIHLADLGPEFD 313
Query: 449 ALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSG 508
L Q ++ EA+ I+ S+ + +E+ +A+ +E+ A+E+ +
Sbjct: 314 KLRQDFNNMVEAVAAALTEIKTASVAVEGGS---SELASSADQLARRTEQQAAALEQTAA 370
Query: 509 AVTEVVSIANEGSQKGDEALKRIEDIQ---HMMSRIEE----TVSKVAEMSRNIEEITNV 561
A+ EV + SQ+ + A K +E+ + H+ + + + ++ S I I V
Sbjct: 371 ALDEVTTTVRTSSQRAENAGKLVEETKRSAHVSATVVRDAIGAMDRIQTSSSQIGRIIGV 430
Query: 562 ITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDE 621
I IA QTNLLALNA +EAARAGEAG+GFAVVAQE+R+LA+ S AA IK++I+ E
Sbjct: 431 IDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSANAAKEIKNLINVSGQE 490
Query: 622 IKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKA 681
+ V L+ ET + + ++EQI R + +
Sbjct: 491 VAAGVG----------------------------LVNETGDALLKIEEQINRISDSIASI 522
Query: 682 LRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+++ A +E + ++ A +Q A +EE A QEL ++ G+F V
Sbjct: 523 VQSYREQATGLQEINGAINQMDQATQQNAAMVEETNAACQELLQQGRLLQDSAGRFVV 580
>pir||A83314 probable chemotaxis transducer PA2654 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948724|gb|AAG06042.1|AE004694_5 (AE004694) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 714
Score = 139 bits (347), Expect = 1e-31
Identities = 137/590 (23%), Positives = 253/590 (42%), Gaps = 86/590 (14%)
Query: 146 WYVQAKEKGGAIITEPYRDAATGQWVI--TYAVPVYVNGQFKGVIGLDVFVSTL--LNET 201
WY KE G + +PY D + ++ + A P+ ++G+ GV+GLD+ +S L L+E
Sbjct: 192 WYTCPKESGQPCVLDPYFDKVGERQLLMTSIAFPLELDGKVIGVMGLDINLSNLQALSEQ 251
Query: 202 KKIKL-GKTGYIAIIDQNGMTLVHPNEEFINKLNIFQV--PELKDLADELKKGK----DE 254
+L G + I+ G+ + + + N+ + +L L GK +E
Sbjct: 252 GNRELYDGVGQVGILSPAGLFAGNSRDAGLLGKNLAKADPQHAGELLQLLAAGKSRLFNE 311
Query: 255 GYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAV 314
L Q ++ I G K W V+ VP S + GP L+ + + +
Sbjct: 312 NDDLKVLQPLQPIPGAK-----PWGVLLEVPKSALLGPALALERQLDDMRREGTWVELGL 366
Query: 315 GFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALI 374
G V L+V++ A P+ + + + +A G + +++ + RDE+G
Sbjct: 367 GLGAAVLGLLVLWLSARGVTRPILGVAHMLRDIASGE----GDLTQRLPHTGRDELG--- 419
Query: 375 QAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIG 434
+L G N KL+ + +RD+ +R
Sbjct: 420 --------ELAGWFNRFLDKLQPI----------------IRDVKVSVR----------- 444
Query: 435 SLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQ 494
D A+ A +S Q S Q+Q I+++ +
Sbjct: 445 -------DARSTADQSAAIS--------------SQTSAGMQQQFREIDQVATASHEMTA 483
Query: 495 TSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRN 554
T+++ R+ + + A +G D + I+ + ++ V ++A S
Sbjct: 484 TAQDVARSAAQAADAARGADQATRDGLALIDRTTQSIDSLAANLTSAMGQVEQLASSSEE 543
Query: 555 IEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSI 614
I + VI +IAEQTNLLALNAAIEAARAG+AGRGFAVVA E+R LA ++ + + I+ +
Sbjct: 544 IGSVLEVIRAIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRNLARRTQDSVEQIRGV 603
Query: 615 IDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANI---ATLLQETSERMTTVKEQI 671
I+ + ++ V+A S E + + + L I T++ + + ++ + E+
Sbjct: 604 IEGLQQGTRDVVDAMHGSHRQAQGSVEQVDEAVAALQRIGEAVTVINDMNLQIASAAEEQ 663
Query: 672 VRTQEEVDKALRAL----ENLAASAEETTASAEEVSSAIEQQTAAIEELR 717
EE+++ + A+ E+L++ AEE+ ++ ++ Q +E+ +
Sbjct: 664 SSVAEEINRNVAAIRDVTESLSSQAEESAQVSQSLNRLANHQQGLMEQFK 713
>pir||S74988 methyl-accepting chemotaxis protein slr1044 - Synechocystis sp.
(strain PCC 6803) >gi|1652103|dbj|BAA17028.1| (D90902)
methyl-accepting chemotaxis protein [Synechocystis sp.]
Length = 869
Score = 139 bits (346), Expect = 1e-31
Identities = 105/373 (28%), Positives = 190/373 (50%), Gaps = 26/373 (6%)
Query: 368 DEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGEL-RDIIEDIRSVT 426
DE+GAL Q F +S+ + L A S+ ER A T +VR +L R +I + V
Sbjct: 503 DELGALTQRFNYISQVI---LTATSEAQERAAT-------TEKVREKLQRQVIRLLDDVE 552
Query: 427 ETFRESIGSLVEM-ANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETI-NE 484
R + E+ A++L A+A +++ E + QV A +QV+ + + N
Sbjct: 553 GASRGDLTVQAEVTADELGAVADAFNLTIQNLREIVLQVKNAAKQVNNNCKDSESFARNN 612
Query: 485 ITDGMRLV---------AQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKR----I 531
+D +R+ Q ES+ + E + EV ++ + KG EA++R I
Sbjct: 613 SSDALRMAEELAVTLNSVQLMTESIERVAENAREAEEVAHTSSLTALKGGEAVERTVGGI 672
Query: 532 EDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFA 591
I+ +S V ++AE S+ I +I VI+ IA +TNLLALNA+I+AARAGEAGRGFA
Sbjct: 673 LQIRETVSETARKVKRLAEASQEISKIVAVISQIASRTNLLALNASIQAARAGEAGRGFA 732
Query: 592 VVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLA 651
+VA E+R+LA+ S ++ I+ I+ +I E + A +EG+ + + ++ + L
Sbjct: 733 IVADEVRQLADRSAKSLKEIEQIVLQIQSETGSVMTAMEEGIQQVIDVTDKSEQSKRALE 792
Query: 652 NIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTA 711
+I + + + ++ V+ QE ++++ +A+ET+ ++ V+ +++ +
Sbjct: 793 DIIEVSNRINTLVRSITADTVKQQENSGAVSNVMQSIELTAQETSQESQRVAGSLQTLVS 852
Query: 712 AIEELRRAAQELK 724
+L + + +
Sbjct: 853 ISRDLLTSVERFR 865
>pir||T44597 transducer protein htpVI [similarity] - Halobacterium salinarum
>gi|1654425|gb|AAB17883.1| (U75438) transducer HtD
protein [Halobacterium salinarum]
Length = 777
Score = 138 bits (344), Expect = 2e-31
Identities = 132/527 (25%), Positives = 228/527 (43%), Gaps = 82/527 (15%)
Query: 270 YKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKI 329
Y + T W+V VP SD G A++ A N +++I G A+ ++ +A+ +
Sbjct: 268 YAPVDGTPWVVTLHVPTSDTYG---LASNMAEN---VLLILGIALAGLVFIAVT-----L 316
Query: 330 ASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLN 389
T+ L L+ A AL G EY + DE+G L +AF ++ +D V +
Sbjct: 317 GRGTVRALNDLEAKAPALERG------EYDTDLDVARVDELGRLFEAFASL-RDAVQRAD 369
Query: 390 AISKKLERLAEGDLSNGLTVEVRGEL----------------------RDIIED------ 421
+ + + + AE S + E R ++ D
Sbjct: 370 SDANEQQVDAEAARSEAEAAQAEPEAAQAEAEAAREESDAGAPPGDDRRGVLGDDACVAA 429
Query: 422 ----IRSVTETFRESIGSLV----EMANDLEKR-------ANALAQVSKDVTEAINQVNE 466
+R + + ++ + EMA D+E A+ +A S D +++ V +
Sbjct: 430 GDLTVRLDADVEQAAMADMRRAFNEMAADMEATIAERGAFADEVATASTDASDSAAAVEQ 489
Query: 467 AIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFS---GAVTEV----VSIANE 519
+ VS R ++ + D + VA ++E +EE + G V E ++ ++
Sbjct: 490 TGRDVSTAVGRIRDRAADQRDQLEAVASETDEMSATIEEVARVAGQVAETSQRAAALGDD 549
Query: 520 GSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIE 579
G +A+ ++E+I+ V + IE I IT IAEQTN+LALNA IE
Sbjct: 550 GQAAAQDAVAQLEEIEDETQAAATAVDDLEAKMSEIETIVAAITDIAEQTNMLALNANIE 609
Query: 580 AARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAV-------EATKEG 632
AARA + G GFAVVA E++ LA+ESK A +++++ ++ + + +V E +G
Sbjct: 610 AARADQDGDGFAVVADEVKDLADESKALAAEMQALVAEVRAQTETSVAAMDRIQERVSDG 669
Query: 633 VSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASA 692
V + E+ +L D G +A T +QE S M V A+ ++AA
Sbjct: 670 VETVSETERSLSDIAGRIAEPDTGVQEISNAMDD-------QAASVSDVTTAVGDVAALG 722
Query: 693 EETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
EET AE A +Q + ++ + L + +R+ +F+V
Sbjct: 723 EETATEAESTRDAAAEQATTLSDVAAQTETLAEHAVALREHAAQFEV 769
>pir||G83313 probable chemotaxis transducer PA2652 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948722|gb|AAG06040.1|AE004694_3 (AE004694) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 561
Score = 138 bits (344), Expect = 2e-31
Identities = 133/557 (23%), Positives = 240/557 (42%), Gaps = 106/557 (19%)
Query: 203 KIKLGKTGYIAIIDQNGMTL------VHPNEEFINKLNIFQVPELKDLADELKKGKDEGY 256
KIK GK GYI D + L V + F ++ + V ++L + + G Y
Sbjct: 91 KIKYGKDGYIFGYDSQVVRLFRGDSPVDVGKSFRDRRDPSGVYLNRELVEAGRNGSH--Y 148
Query: 257 VLYTFQ-------GIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVI 309
V YT + K+ L ++ + + L + ++ ++ ++
Sbjct: 149 VTYTSPLPGNESVMVPKLSYTLYLPKWDMVIGSAINLDGVEAQLVEIKQDIDERIGTLIA 208
Query: 310 QGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDE 369
+ V++V +LV+ +A+ L PL +++ +A G + +++ DE
Sbjct: 209 SIVGIAGVLLVVLLVIGLAVANAMLRPLHQIRQNLDDIAAGE----GDLTRRLPVTSYDE 264
Query: 370 IGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETF 429
+G L +F + + G + I+ G+T G+L+ ++E + + E
Sbjct: 265 LGELAGSFNRFVEKIHGLVRQIA-------------GMT----GDLKQLVEQMSAQAERS 307
Query: 430 RESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGM 489
++ +E++ + QV+ AIN+++ A +V+ AQR E
Sbjct: 308 EQA----------MERQRHETDQVA----TAINEMSAAAHEVAQSAQRAAEA-------- 345
Query: 490 RLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVA 549
QT E A G++ + ++ +E G +D+Q ++S
Sbjct: 346 --AQQTDHEGQAAKRVVDGSIERIHALVDEIRDSGTSLDSLQQDVQSIVS---------- 393
Query: 550 EMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAAD 609
+ VI SIAEQTNLLALNAAIEAARAGEAGRGFAVVA E+R LA ++Q+
Sbjct: 394 --------VLGVIRSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALASRTQQSTQ 445
Query: 610 NIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKE 669
I+ +ID++ AV+A + GE+ E + + + + + +
Sbjct: 446 EIQGMIDRLQQGTNAAVDAMRRS----GEAGEGTSNQANQAGDSLDAIAQLIATINAMNA 501
Query: 670 QIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQE------- 722
QI A++AEE TA AEE++ ++ Q A++ + AQ+
Sbjct: 502 QI-----------------ASAAEEQTAVAEEINRSVHQIAGAVDSVADEAQQGAQTARS 544
Query: 723 LKDMVGRMRQIVGKFKV 739
L + + ++VG+F++
Sbjct: 545 LAQLGQGLGRLVGQFRI 561
>pir||T44606 transducer protein htpIV [similarity] - Halobacterium salinarum
>gi|1654427|gb|AAB17884.1| (U75439) transducer HtF
protein [Halobacterium salinarum]
Length = 804
Score = 138 bits (344), Expect = 2e-31
Identities = 96/373 (25%), Positives = 190/373 (50%), Gaps = 23/373 (6%)
Query: 378 EAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLV 437
EA++ +L S + +A+GDL+ + + E + ++ +F +S
Sbjct: 432 EALAAELEAQAERYSDVIGGVADGDLTRRMPADDTDN-----EAMAAIAASFNDS--QWE 484
Query: 438 EMANDLEKRANALAQVSK-------DVTEAINQVNEAIQQVSIEAQRQQETINEITDGMR 490
D+++ A+A+A S+ D A QV+E++Q+++ A Q+ ++ ++ M
Sbjct: 485 HTIIDIQEFADAVATASEEAEVGAADAERASGQVSESVQEIAGAADEQRNMLDTVSGEMT 544
Query: 491 LVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAE 550
++ EE V + + + + IA +G Q ++A++R +Q + + V + +
Sbjct: 545 DLSAAIEE-VASADSVAEHSHQTAEIARDGEQTAEDAIERSLTVQEAIDATVQNVEALDD 603
Query: 551 MSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADN 610
I EI ++I+ IAEQTN+LALNA IEAARA ++G GFAVVA E++ AEE++++A +
Sbjct: 604 QMAEISEIVDLISDIAEQTNMLALNANIEAARADKSGDGFAVVADEVKDFAEETQESAGD 663
Query: 611 IKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQ 670
I+ I E++ AT ES + D + + + T + + S+ T ++
Sbjct: 664 IERRI----TEVQSQTTATVAEARAAEESMDAGIDAVEEVVDAFTAVSDHSDETDTGVQE 719
Query: 671 IVRTQEE----VDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDM 726
I T ++ ++A+ E +A ++ T A+ VS+ E+Q A++ E+ + L
Sbjct: 720 ISDTTDDQAASTEEAVSMTEEVADLSDSTAGEAQSVSATAEEQAASMSEISDTVESLSGQ 779
Query: 727 VGRMRQIVGKFKV 739
+++ ++ +F+V
Sbjct: 780 AEQLKALLSEFEV 792
>pir||F83280 probable chemotaxis transducer PA2920 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949014|gb|AAG06308.1|AE004718_5 (AE004718) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 545
Score = 138 bits (343), Expect = 3e-31
Identities = 93/348 (26%), Positives = 170/348 (48%), Gaps = 27/348 (7%)
Query: 388 LNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVE----MANDL 443
L + ++LE +A GD L V + RD + S F + + L+ + ++
Sbjct: 220 LQRLLQRLEEIANGD--GDLRVRLEVTSRDEPGRLGSAFNAFLDKLQPLIREVGRVTGEV 277
Query: 444 EKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAM 503
A +LA ++ IN + ++ QVS A + ++E+ + AQ ++++ R
Sbjct: 278 ADSAGSLAGMTAANDRLINSEHASVDQVSTAATQMSSAVHEVARNAQSAAQVADDARRQA 337
Query: 504 EEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVIT 563
E + V + + + +Q+ + + E++ ++A+ + +I+ + VI
Sbjct: 338 REGANVVEATIEVIRQLAQEVESS--------------SESIQQLAQETASIDAVLTVIK 383
Query: 564 SIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIK 623
IAEQTNLLALNAAIEAARAGE GRGFAVVA E+R LA ++ + +I++ I+++ ++
Sbjct: 384 GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTKDIQARIERLQAGVQ 443
Query: 624 EAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALR 683
AV A + G S RD++ A + +L T + + + + + ++ R
Sbjct: 444 NAVRAMQSG-------SLKARDSVERAAGVDGVLAATGDAVGRINDLAAQIASACEEQSR 496
Query: 684 ALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMR 731
++ +A + E + + + EQ T A L + EL +VGR R
Sbjct: 497 VIDEIARNISEVRELSAQAAEHSEQGTGASRRLSELSSELARLVGRFR 544
>gi|10954717 hypothetical chemoreceptor gene~similar to orf2 gene in pTi15955
[Agrobacterium rhizogenes] >gi|8918717|dbj|BAA97782.1|
(AB039932) hypothetical chemoreceptor gene~similar to
orf2 gene in pTi15955 [Agrobacterium rhizogenes]
>gi|10567381|dbj|BAB16190.1| (AP002086) hypothetical
chemoreceptor gene~similar to orf2 gene in pTi15955
[Agrobacterium rhizogenes]
Length = 758
Score = 137 bits (342), Expect = 4e-31
Identities = 108/411 (26%), Positives = 201/411 (48%), Gaps = 27/411 (6%)
Query: 318 IIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLER-DEIGALIQA 376
++ + +V Y +S PL+ + L G + +IR + R DEIG + +A
Sbjct: 350 VLFGMGIVGYVFSSRLTKPLKDITGLMNRLNNG------DQTIEIRSVSRSDEIGIMARA 403
Query: 377 FEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSL 436
E+ + + + ++R G L + + R E +V+E + +L
Sbjct: 404 LESFRQSAADKVRMEEEAIQR--NGQLEHERQLRETDRARSAAELEVAVSE-LATGLKNL 460
Query: 437 VEMANDLEKR---ANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVA 493
E D A +L Q+ +D ++ ++ ++Q+ + Q N++ + ++
Sbjct: 461 AEGRLDHRIEHPFAPSLDQLRQDFNGSMTRLQATMRQIRDNVEMIQGNGNQMAEAAEDLS 520
Query: 494 QTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEA-------LKRIEDIQHMMSRIEETVS 546
+ +E+ ++EE + AV E+ +++ +A + +D ++ + +
Sbjct: 521 KRTEQQAASLEETAAAVDEITVTVRSSAERAKDADQIVRQAKRSADDSAIVVDNAIDAMG 580
Query: 547 KVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQ 606
++ E SR IE+IT VI IA QTNLLALNA +EAARAG+AG+GFAVVAQE+R+LA+ S +
Sbjct: 581 RIEEASRQIEQITGVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEVRELAQRSAK 640
Query: 607 AADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTT 666
AA IK +I+K T E+ +E +V+ + S + ++ IA S +
Sbjct: 641 AAKEIKVLINKSTAEVNTGSHLVQETGAVLAKISTQIVTISHHVETIA----RGSHDQSC 696
Query: 667 VKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELR 717
+ + T ++D + ++ AA EETTA++ E++S + A +++ R
Sbjct: 697 ALQGVNSTVNQMD---QMTQHNAAMVEETTAASRELASQADSLLALVQQFR 744
>pir||B82203 methyl-accepting chemotaxis protein VC1405 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655901|gb|AAF94562.1| (AE004219) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 595
Score = 137 bits (342), Expect = 4e-31
Identities = 100/355 (28%), Positives = 168/355 (47%), Gaps = 29/355 (8%)
Query: 379 AVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVE 438
A SK +V + K +AEG+ S V E+ +I + ++ ++ +G +++
Sbjct: 262 AFSKQIVMAIARARKLANEMAEGNFSKRAKVTTGDEIGQLITSMNTMAQSLSHIVGEVID 321
Query: 439 MANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEE 498
AN + LA ++ +++ Q+QQ ++T M +A T E
Sbjct: 322 RANTIASTVTQLASSAESNKKSV--------------QQQQANTEQVTSAMAQMAITITE 367
Query: 499 SVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQ-HMMSRIEETVSKVAEM---SRN 554
+ EE S A A E ++ + L + E + +++ +++ + E+ +R
Sbjct: 368 VASSAEESSAATAR----AQENARYSCDVLGKTETVSSQLVANAQQSQQMIVELEASTRQ 423
Query: 555 IEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSI 614
IE V+ I+EQTNLLALNAAIEAARAGE GRGFAVVA E+R LA S+QA IK +
Sbjct: 424 IESFVLVVEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRSQQATHEIKGL 483
Query: 615 IDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRT 674
I + + + A + I ES ++ L +I L E +T+ Q+
Sbjct: 484 IQTLVERAQSATKMIDSSDRQIEESFSSITAAKKQLDSINLALLE----LTSANTQVAAA 539
Query: 675 QEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGR 729
EE A + ++ + + + E + + ++ A EEL + AQ LK ++GR
Sbjct: 540 SEEQSV---AADEISHNMTDIRDAGETIMLSAQETAQASEELAQQAQGLKLLMGR 591
>pir||C83080 probable chemotaxis transducer PA4520 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950762|gb|AAG07908.1|AE004866_2 (AE004866) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 673
Score = 137 bits (342), Expect = 4e-31
Identities = 112/396 (28%), Positives = 198/396 (49%), Gaps = 41/396 (10%)
Query: 354 QVSEYLKQIRYLERDEIGALIQAFEAVSKDLVG-------TLNAISKKLERLAEGDLSNG 406
Q+ + L+Q+R + AL F A+ G TL + + +ER+A GD++
Sbjct: 309 QLQKRLQQVRTQMLLLVAALAVVFAAILYLYGGFYVSTRATLKDLGRMMERVAGGDMTVS 368
Query: 407 LTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNE 466
R EL ++ ++F ES+ + ++ +E+ + + +V + + E
Sbjct: 369 FQARSRDELGEL-------GQSFNESVAKIHDL---IERVSQTVGEVERQTLRVESVSAE 418
Query: 467 AIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDE 526
+ Q V+ QR Q I ++ M +A T++E R+ + AV+ S+ E
Sbjct: 419 SNQAVA--GQRSQ--IEQVATAMNQMAATAQEVARSA---AMAVSSANSVNQETLSGRSL 471
Query: 527 ALKRIEDIQHMMSRIEETVS---KVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARA 583
++ IQ + I+++V+ ++A S +I ++ +VI IAEQTNLLALNAAIEAARA
Sbjct: 472 VESQVGSIQRLAGEIDQSVAAINRLASDSASISQVLDVIKGIAEQTNLLALNAAIEAARA 531
Query: 584 GEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETL 643
GE GRGFAVVA E+R LA+ ++Q+ I+ +I ++ + AV+A +G S T
Sbjct: 532 GEQGRGFAVVADEVRTLAKRTQQSTAEIEQMILRLQGGVDAAVKA-------MGSSHHTA 584
Query: 644 RDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVS 703
T+ N + +Q+ E + IV +++ A E A A + + E++
Sbjct: 585 DGTV----NESAQVQQALENILGAVGMIVDQNQQI---AAAAEQQTAVAHDIDQNIVEIN 637
Query: 704 SAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
A E+ + RA++EL V ++++++G F+V
Sbjct: 638 QAGERTAEGASQTERASRELGAQVTQLKRLIGAFRV 673
>pir||F82174 methyl-accepting chemotaxis protein VC1643 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656156|gb|AAF94794.1| (AE004242) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 596
Score = 136 bits (339), Expect = 8e-31
Identities = 95/351 (27%), Positives = 170/351 (48%), Gaps = 23/351 (6%)
Query: 380 VSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEM 439
++K + ++ ++ +A GDL+ + V E DI + + + +F+E I S
Sbjct: 265 IAKRVNNAVHHLASSATHIAAGDLTQRIPVTGNDEFSDIAKYVNRIVTSFQEVISSNRHS 324
Query: 440 ANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEES 499
+ L A A V+ + I + QQ++ + T++E+ L A+ SEE+
Sbjct: 325 VSALATAAEENAAVAMQTKQNIVEQQSQTQQIAAAIHQFTATVHEVAQSAGLAAEASEEA 384
Query: 500 VRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEIT 559
+A A +G + +E + IE + + + ++ + +A+ S +I +
Sbjct: 385 EQA--------------AMQGRKVVEENIAMIEGLSNDLQKMLAAMQLLAKDSEDIGSVV 430
Query: 560 NVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKIT 619
+VI SI+EQTNLLALNAAIEAARAGE GRGFAVVA E+R LA ++++ I + ++
Sbjct: 431 DVIQSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQESTKQILQTVQRLQ 490
Query: 620 DEIKEAVEATKEGVSVIGESSETLRDTIGYLANIA-TLLQETSERMTTVKEQIVRTQEEV 678
+++ ++GVS ++ E R LA A + + +R++T+ QI EE
Sbjct: 491 QSSRDSANLIEQGVSGASKAVEKAR-----LAGTALSQITANVDRISTMNTQIATASEEQ 545
Query: 679 DKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGR 729
+ + E + + + +Q + A EL R A+ ++ V R
Sbjct: 546 SAVTEEINKNIITISEI---SNQTALGAQQSSEATLELARLAESMQQEVAR 593
>gb|AAG13635.1| (AF036940) putative chemotaxis protein [Ralstonia sp. U2]
Length = 423
Score = 136 bits (338), Expect = 1e-30
Identities = 90/346 (26%), Positives = 169/346 (48%), Gaps = 37/346 (10%)
Query: 373 LIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRES 432
L+ +F A+ K ++G L + ++A+GDL+ + E+ +I + + +
Sbjct: 55 LLASFWAIRKAVLGPLEEALRLAGQIAQGDLTGQIVTRSNDEVGQLITALADMQGSLSSM 114
Query: 433 IGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLV 492
+ + + A LE ++ +AQ + D++ ++++ + + T+ + D R
Sbjct: 115 VAHVRQNAESLEAASSEIAQGNHDLSARTESQASSLEETAASMEELGSTVRQNADNARHA 174
Query: 493 AQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMS 552
Q ++ + + AV +VV+ T++ + E S
Sbjct: 175 NQLAQSASTVAVQGGEAVAQVVN----------------------------TMTGINESS 206
Query: 553 RNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIK 612
R I +I +VI IA QTN+LALNAA+EAARAGE GRGFAVVA E+R LA+ S +AA IK
Sbjct: 207 RKIADIISVIDGIAFQTNILALNAAVEAARAGEHGRGFAVVATEVRSLAQRSAEAAKEIK 266
Query: 613 SIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIV 672
++I+ ++V ++G +++ ++ T+R+ + + + ++ E S T + +
Sbjct: 267 TLIN-------DSVGRVEQGSALVDQAGTTMREVVDSIRRVTDIMGEISAASTEQSQGVA 319
Query: 673 RTQEEVDKALRALENLAASAEETTASAEEVSSAIEQ--QTAAIEEL 716
+ E V +A + AA E+ A+A + E+ QT A+ +L
Sbjct: 320 QVGEAVTNMDQATQQNAALVEQMAAAASRLKGQSEELVQTVAVFKL 365
>pir||B82204 methyl-accepting chemotaxis protein VC1413 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655909|gb|AAF94570.1| (AE004219) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 578
Score = 136 bits (338), Expect = 1e-30
Identities = 98/362 (27%), Positives = 173/362 (47%), Gaps = 42/362 (11%)
Query: 380 VSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEM 439
VS + LN + L + GDL+ L VE + E+ I I E ++ + +
Sbjct: 247 VSFKPLSRLNTLVANLSQ-GNGDLTQRLAVESKDEIGQICNSINLFIEKLQQMFIDVADS 305
Query: 440 ANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEES 499
+ ++++ A+ +S +N +N+ Q E ++ I E++ +AQ+++++
Sbjct: 306 SKEIDR---AVVHLSNQARSNLNTLNQHTQ----ETEQAITAIEEMSASAGSIAQSADDA 358
Query: 500 VRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEIT 559
E + A+E Q EA+ + + + +S + ET+++++E ++ I +
Sbjct: 359 ALLTERTN-------RYADESKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQINSVL 411
Query: 560 NVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSI----- 614
VI +IAEQTNLLALNAAIEAARAGE GRGFAVVA E+R LA ++Q+ I +
Sbjct: 412 QVIGAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRTQQSTSQINDMLATLK 471
Query: 615 -----IDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKE 669
+ K D + E T E + + +S + D++ + N+ TL+ ++ V
Sbjct: 472 TTTENVVKEMDSTRIHCEETAERTNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQRQVTH 531
Query: 670 QIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGR 729
++ + + + +R L AA Q T+ EL+ + L D+VGR
Sbjct: 532 EVSKNMAAIQEMVRKLNMNAA-----------------QVTSVSNELQNTSHALSDVVGR 574
Query: 730 MR 731
R
Sbjct: 575 FR 576
>pir||T44964 transducer protein car [validated] - Halobacterium salinarum
(strain Flx15) >gi|2072795|gb|AAC45264.1| (U74668)
soluble transducer protein HtH [Halobacterium salinarum]
Length = 451
Score = 136 bits (338), Expect = 1e-30
Identities = 85/279 (30%), Positives = 145/279 (51%), Gaps = 15/279 (5%)
Query: 456 DVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVS 515
+++E+I++V ++ A ++ E + D + + T EE + EE S A
Sbjct: 183 ELSESIDKVGSFAEETEPFAGKEIERMEGFADKVSNQSATIEEIASSAEEVSQASQRAQD 242
Query: 516 IANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALN 575
A EG Q + A+ R+ +Q R+ +T+ + + + EI + I IA+QTN+LALN
Sbjct: 243 RATEGEQTAETAIDRMGAVQESAERVNDTIDGLTSQADEMSEIIDAINDIADQTNMLALN 302
Query: 576 AAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSV 635
A+IEAARAGE G GFAVVA E++ LAEES++ AD I+ + I E VE T +
Sbjct: 303 ASIEAARAGEKGEGFAVVADEVKSLAEESQERADEIEQM-------IVEMVETTDQTADR 355
Query: 636 IGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEET 695
IG+++ + + I T ++ET + + ++ + T V + A ++ AAS E+
Sbjct: 356 IGQTTTEIEEAI-------TAVRETLDSLQEIRNAVDETATGVKEVAGARDH-AASTEQV 407
Query: 696 TASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIV 734
A+ +E + + ++ L + A E D V + +V
Sbjct: 408 AATTDEAVDKLTELEDRLDNLSQIASEQHDRVAEIEDMV 446
>gb|AAD13638.1| (U84257) methyl-accepting chemotaxis protein B [Treponema
denticola]
Length = 369
Score = 135 bits (337), Expect = 1e-30
Identities = 110/411 (26%), Positives = 190/411 (45%), Gaps = 58/411 (14%)
Query: 314 VGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGAL 373
+G +I++ L VIY +A L P+ K A + +A+G+ + ++ DEI L
Sbjct: 6 LGIIILIITLAVIYAVAHYMLHPIRKTVSALKDIAQGK----GDLTVRLPINGNDEITDL 61
Query: 374 IQAFEAVSKDLVGTLNAISKK---LERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFR 430
+ F + + + + K +E + E +L++ +T + + +I +I V
Sbjct: 62 SEYFNQTIEKIGAAIKNVGKNSVSMEAIGE-ELASNMT-QTASAINEISANIEGVKNQTL 119
Query: 431 ESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMR 490
S+ E A +E+ + I Q+N +I+ + R +I E+ +
Sbjct: 120 TQAASVTETAATIEQ-----------IVRTIKQLNNSIENQAASVARSTASIEEMVANIA 168
Query: 491 LVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAE 550
+ QT E++ ++ + A ED + + K+AE
Sbjct: 169 SITQTLEKTYDVVKNLASAT---------------------EDGKETIITSNSVTQKIAE 207
Query: 551 MSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADN 610
S ++ E ++VI IA QTNLLA+NAAIEAA AGEAG+GFAVVA EIRKLAE+S
Sbjct: 208 ESGSLMEASSVIQHIASQTNLLAMNAAIEAAHAGEAGKGFAVVADEIRKLAEDSATQGKT 267
Query: 611 IKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQ 670
I S + ++ EI E +SV SS+T+ D + N++ ++ S+R+T +
Sbjct: 268 ITSTLKTLSSEI--------ESLSV---SSKTVEDKFSTIFNLSEQVKSMSDRLTEAMHE 316
Query: 671 IVRTQEEVDKALRALENLAASAEETTASAEEV---SSAIEQQTAAIEELRR 718
+EV L A++N+ E A +EE+ + ++ ++ L R
Sbjct: 317 QENGSKEV---LGAIKNINTVTVEVQAGSEEMLKGGEGVAEEMLKLDNLTR 364
>gb|AAC46418.1| (AF022807) putative methyl accepting chemotaxis protein [Rhizobium
leguminosarum]
Length = 715
Score = 134 bits (335), Expect = 2e-30
Identities = 135/525 (25%), Positives = 235/525 (44%), Gaps = 93/525 (17%)
Query: 241 LKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTA 300
L D+ D L+ + + K GG+K L+ T T+ S + + SAT T
Sbjct: 241 LGDMKDVLQASGNIRQTQLSVLAPKISGGFKDLQATVTGAQKTLDGS-VDATVASATSTT 299
Query: 301 INKMKMIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLK 360
+ +I G ++IV LV+ Y + + + + + + LA G + V ++
Sbjct: 300 L------IISG-----LLIVIGLVLSYFVGRLISSAVRNMAQSMEQLARGEERIVITGVE 348
Query: 361 QIRYLERDEIGALIQAFEAVSKD----LVGTLNA-----------ISKKLERLAEGD--- 402
R E+GA+ ++ + + L+ NA + ++ ERL++
Sbjct: 349 H-----RHELGAMARSLKVFQETGRAKLIAEANAERARLAAEEERLRQEAERLSDAQVME 403
Query: 403 -----LSNGLTVEVRGELRDIIEDIRS----VTETFRESIGSLVEMANDLEKRANALAQV 453
+S GL +G+L + ++ + + F S+ SL E + + + +
Sbjct: 404 HAFRQISVGLDALSKGDLTVRVGEVDHRYVRIRDHFNNSVASLEEAVDAVIRAVGTIRSG 463
Query: 454 SKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEV 513
+++ A N + +Q + + + E+T G V T+E + RA V
Sbjct: 464 LAEISTASNDLARRTEQQAASLEETVAALGEVTRG---VNGTAEGASRAQG--------V 512
Query: 514 VSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLA 573
V+ A ++KG E + R D M+ I+ + SK+ I +VI IA QTNLLA
Sbjct: 513 VATARTNAEKGGEIVARAIDA---MTEIQNSSSKIGN-------IISVIDEIAFQTNLLA 562
Query: 574 LNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGV 633
LNA +EAARAGEAG+GFAVVAQE+R+LA+ S AA IK +I + ++ K GV
Sbjct: 563 LNAGVEAARAGEAGKGFAVVAQEVRELAQRSANAAREIKQLISTSSAQV-------KTGV 615
Query: 634 SVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAE 693
++GES +L ++++ + TV E V +E+ A S
Sbjct: 616 QLVGESGLSLEQ----------IVEQVTAMNATVAEIAVAAREQ-----------ATSLR 654
Query: 694 ETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFK 738
E +A+ +++ +Q A +EE AAQ L + +++ +F+
Sbjct: 655 EVSAAGDQMDKVTQQNAAMVEETTAAAQSLTHETESLAELLRRFR 699
>pir||C83490 probable chemotaxis transducer PA1251 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947182|gb|AAG04640.1|AE004554_8 (AE004554) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 541
Score = 134 bits (335), Expect = 2e-30
Identities = 97/337 (28%), Positives = 163/337 (47%), Gaps = 27/337 (8%)
Query: 396 ERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSK 455
+R+A DL+ + + E +++ +RS+ + ++I + + A L A L V++
Sbjct: 226 DRIAARDLTGEIASDGDDEPAQLMKAMRSMQASLHDTIEQIGDSAALLAAAAEQLNAVTE 285
Query: 456 DVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVS 515
+ ++ + N+ I+ + + E+ A+ S S RA
Sbjct: 286 EGNRSLARQNDEIEMAATAVNEMSAAVEEVARNASSTAEASSLSERA------------- 332
Query: 516 IANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALN 575
A G + + ++ I + + + V +A +++I ++ +VI +IAEQTNLLALN
Sbjct: 333 -AGNGRARVGQTVRSIRQMNAEIGQTARLVEGLASQAQDIGKVLDVIRAIAEQTNLLALN 391
Query: 576 AAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEG--- 632
AAIEAARAGE GRGFAVVA+E+R LA ++Q+ I+ +I + + AV A +E
Sbjct: 392 AAIEAARAGEQGRGFAVVAEEVRALAHRTQQSTHEIEGMIASVREGTDTAVSAMRENDQR 451
Query: 633 VSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASA 692
+ + +E +G +A AT + E + + + E+ EVD L N+ A
Sbjct: 452 ARQMLDEAEAADHALGEIAEHATRINERTLVIASAAEEQAHVAREVD---HNLVNIRDVA 508
Query: 693 EETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGR 729
+TT A EQ A EL R A +LK M+GR
Sbjct: 509 VQTTQGA-------EQTRGASHELSRLANDLKGMIGR 538
>pir||S75940 methyl-accepting chemotaxis protein sll0041 - Synechocystis sp.
(strain PCC 6803) >gi|1001300|dbj|BAA10787.1| (D64006)
methyl-accepting chemotaxis protein I [Synechocystis
sp.]
Length = 891
Score = 134 bits (334), Expect = 3e-30
Identities = 95/364 (26%), Positives = 182/364 (49%), Gaps = 19/364 (5%)
Query: 365 LERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRS 424
LER ++ A + E + + + + LE L E D + + +R + + ++I +
Sbjct: 541 LERSDLLAQQKIAEVEQRQMREKMQ--KRALELLMEVDPVSRGDLTIRAHVTE--DEIGT 596
Query: 425 VTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINE 484
+ +++ +I SL + ++ A+ + T N+V A++Q++ +A RQ + E
Sbjct: 597 IADSYNATIESLRRIVTQVQTAASQFTE-----TTDTNEV--AVRQLAQQANRQALDVAE 649
Query: 485 ITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIED----IQHMMSR 540
+ + Q +S++A+ E + V A + +G++A+ R D I+ ++
Sbjct: 650 ALERL----QAMNKSIQAVAENAAQAESAVQRATQTVDQGEDAMNRTVDGIVAIRETVAA 705
Query: 541 IEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKL 600
+ V ++ E S+ I ++ N+I S A+QTNLLALNAAIEAA AGE GRGFAVVA E+R L
Sbjct: 706 TAKQVKRLGESSQKISKVVNLIGSFADQTNLLALNAAIEAAHAGEEGRGFAVVADEVRSL 765
Query: 601 AEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQET 660
A +S +A I ++ I E E V A + G + ++ + +T L I + +
Sbjct: 766 ARQSAEATAEIAQLVATIQAETNEVVNAMEAGTEQVVVGTKLVEETRRSLNQITAVSAQI 825
Query: 661 SERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAA 720
S + + + + + + + +A A++ ++ A VS+ ++ A + L+ A
Sbjct: 826 SGLVEAITSAAIEQSQTSESVTQTMALVAQIADKNSSEASGVSATFKELLAVAQSLQEAV 885
Query: 721 QELK 724
++ K
Sbjct: 886 KQFK 889
>sp|Q00986|MCPA_CAUCR CHEMORECEPTOR MCPA (METHYL-ACCEPTING CHEMOTAXIS PROTEIN)
>gi|94570|pir||S23064 mcpA protein - Caulobacter
crescentus >gi|40424|emb|CAA47122.1| (X66502) mcpA
[Caulobacter crescentus]
Length = 657
Score = 133 bits (332), Expect = 6e-30
Identities = 106/398 (26%), Positives = 182/398 (45%), Gaps = 76/398 (19%)
Query: 352 LKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEV 411
L+Q+ ++ L DE + A A +++ ++ +++ LE+LA GDL+ +T +
Sbjct: 267 LEQLRADQEKSAALTADERRSKEAAAAAAAQEASLVVSNLAEGLEKLASGDLTFRVTADF 326
Query: 412 RGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQV 471
G+ R + +D + + +E++ + + L A+ +A S D++ Q
Sbjct: 327 PGDYRKLKDDFNAAMGSLQETMKVIAASTDGLSTGADEIAHASDDLSRRTEQQ------- 379
Query: 472 SIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRI 531
A + EE+ A++E + V + A + S D
Sbjct: 380 ---------------------AASLEETAAALDELTATVRRTAAGARQAS---DVVSTTR 415
Query: 532 EDIQHMMSRIEETVSKVAEMSRN---IEEITNVITSIAEQTNLLALNAAIEAARAGEAGR 588
+ H + + VS + E+ ++ I +I VI IA QTNLLALNA +EAARAGEAGR
Sbjct: 416 GEATHSGQVVHQAVSAMGEIEKSSGQISQIIGVIDEIAFQTNLLALNAGVEAARAGEAGR 475
Query: 589 GFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIG 648
GFAVVAQE+R LA+ S +AA IK++I T ++ +GVS++G++ E L+ +
Sbjct: 476 GFAVVAQEVRALAQRSAEAAKEIKALISSSTQQV-------SQGVSLVGQTGEALQRIVT 528
Query: 649 YLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAI-- 706
+ I L+ E +AASA E EV++A+
Sbjct: 529 KVGEIDALVTE----------------------------IAASAAEQATGLNEVNTAVNQ 560
Query: 707 -----EQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+Q A +E+ A LK + +++ +F+V
Sbjct: 561 MDQVTQQNAAMVEQSTAATHSLKGETAELVRLMARFQV 598
>pir||S72163 methyl-accepting chemotaxis protein mcpA - Rhizobium leguminosarum
bv. viciae plasmid >gi|780656|gb|AAC44311.1| (U23040)
chemoreceptor protein [Rhizobium leguminosarum bv.
viciae]
Length = 639
Score = 133 bits (331), Expect = 7e-30
Identities = 125/462 (27%), Positives = 204/462 (44%), Gaps = 73/462 (15%)
Query: 298 DTAINKMKMIVIQGFAV---GFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQ 354
DT++ + + FAV GF+ I A LV P++++ + +A+G L
Sbjct: 187 DTSVLSLGTAIAALFAVSCFGFLAIRAWLV----------KPIKQMVTTMKVIADGDLTS 236
Query: 355 VSEYLKQIRYLERDEIGALIQAFEA----------VSKDLVGTLNAISKKLERLAEGDLS 404
E + RDEIG++ +A + + KD + A + RLAE +
Sbjct: 237 TVEGT-----IRRDEIGSMARAVQIFKDNELRARDLGKDAETSRGANEIERARLAETE-- 289
Query: 405 NGLTVEVRGELRDIIEDIRSVTETFRE-SIGSLV-----EMANDLEK-RANALAQVSKDV 457
R RD+ E + E R + G+LV + A D E RAN A V++ +
Sbjct: 290 -------RQRARDMAEATSGLAEGLRHLADGNLVFSLDDKFAEDFEPLRANFNAAVAQ-L 341
Query: 458 TEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIA 517
E++ V+ A + + AQ + +++ A + E++ A+++ + V
Sbjct: 342 AESLRAVSNATESIDDGAQEISLSAQDLSRRTEHQAASLEQTAAALDQITQNVASSSKRT 401
Query: 518 NEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAA 577
E EA K ++S + ++ S I I VI IA QTNLLALNA
Sbjct: 402 AEARHVAIEANKSARHSGEVVSSAVAAMQRIERSSSRISSIVGVIDEIAFQTNLLALNAG 461
Query: 578 IEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIG 637
+EAAR+GEAG+GFAVVAQE+R+LA+ S AA IK +I DE+ V+
Sbjct: 462 VEAARSGEAGKGFAVVAQEVRELAQRSAHAAKEIKDLILNSVDEVSSGVK---------- 511
Query: 638 ESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTA 697
L+++T E + + +QIV ++D A +A+ E
Sbjct: 512 ------------------LVRDTGEALKIIVDQIVLINTQLDAVTAASNEQSATLFEVNR 553
Query: 698 SAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+ ++ +Q A EE A+ L V ++R IV +F++
Sbjct: 554 TVNQMDQVTQQNAAMSEESTAASTALAIEVKQLRGIVAEFQI 595
>pir||H83324 probable chemotaxis transducer PA2573 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948634|gb|AAG05961.1|AE004685_7 (AE004685) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 535
Score = 133 bits (331), Expect = 7e-30
Identities = 107/414 (25%), Positives = 194/414 (46%), Gaps = 42/414 (10%)
Query: 337 LEKLKYAAQALAEGRLKQVSEYLKQ-IRYLERDEIGALIQAFEAVSKDLVGTLNAISKKL 395
LE A +L E ++Q + + +RY G ++ A + + L A+ + L
Sbjct: 153 LEGRNEALSSLIEKHVEQTNRAREDSMRYSAWMLAGGILVACLVLGQLCRQLLRAVLQPL 212
Query: 396 ERL-------AEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRAN 448
+L A+G+L + V+ E + + + E R+ I + + + +L +
Sbjct: 213 RKLVSSARVIAQGNLQEPIGVDSNDEAGQLQRALGEMQENLRQMITIIRQESEELHDTSQ 272
Query: 449 ALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITD---GMRLVAQTSEESVRAMEE 505
++ Q S+ + +Q ++ ++ + I++I+D R+++ SEE
Sbjct: 273 SIGQTSQSIVHGASQQADSATSMAASMEEMITNISQISDHADNARVISAKSEE------- 325
Query: 506 FSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSI 565
+A+ G Q ++ + I ++++ +++ + + S I I VI I
Sbjct: 326 ----------LASSGGQVILNVVEGMSRIADVVNQSSTSITALGQSSDEIHSIIQVIKGI 375
Query: 566 AEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEA 625
AEQTNLLALNAAIEAARAGEAGRGFAVVA E+R LA + Q+ I ++I++I +A
Sbjct: 376 AEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAARTTQSTQEITAMIERIRASTGQA 435
Query: 626 VEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRAL 685
+ + + GVS + E R +I +L T +V ++I +T E +A
Sbjct: 436 INSMEAGVSRVNEGVSFARQA---GVSINEILDGT-RHAASVVDEISQTIREQSRA---- 487
Query: 686 ENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
++E E ++ +Q T A+ E+ A+ L ++ MR V +FK+
Sbjct: 488 ------SDEIAQRVELIAQRSQQNTQAMHEMAATARRLNEVAATMRSSVERFKI 535
>pir||E83041 probable chemotaxis transducer PA4844 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951114|gb|AAG08229.1|AE004897_7 (AE004897) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 657
Score = 133 bits (331), Expect = 7e-30
Identities = 98/411 (23%), Positives = 193/411 (46%), Gaps = 51/411 (12%)
Query: 328 KIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQ---AFEAVSKDL 384
+++++T A L+ ++ A L + Q+R ++ I ++ A +++ + L
Sbjct: 270 QLSADTGARLDAVRQALATLEPQVRGERQRLQGQVRLIQGGMIALILLIALAIDSLQRRL 329
Query: 385 VGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLE 444
L + L A+GD S +++ R ED+R++ ++ L E+ +
Sbjct: 330 ARVLGQLVPALSAWADGDFSRPISLRTR------TEDLRNLEDSLNRLRSFLAELVGAIH 383
Query: 445 KRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAME 504
+RA +A S+ + E + ++ +++ + + + ++ + ++ ++ VA + ++ A
Sbjct: 384 RRAEQVAGSSQTLAEVSSGLHAGVERQAGDTGQIRDALGDMEAAIQQVAGDASQTADASR 443
Query: 505 EFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITS 564
AV G + E+L + ++ + +++ ++AE S I + VI S
Sbjct: 444 SAGQAV-------EHGQRVIGESLGGLRELVDEVQGNAQSIERLAEESATIGSVLTVIRS 496
Query: 565 IAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKE 624
IAEQTNLLALNAAIEAARAG+ GRGFAVVA+E+R LA+ + A + I+ +I ++ ++
Sbjct: 497 IAEQTNLLALNAAIEAARAGDQGRGFAVVAEEVRSLAQRTAGATEEIQQLIGRLQQAARQ 556
Query: 625 AVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRA 684
+VEA + V E RT E+ A A
Sbjct: 557 SVEAMRSQV-----------------------------------EHAERTAEQAGAAEGA 581
Query: 685 LENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVG 735
L+ + A+ AE ++ QQ+ A+ E+R ++ + + G +++G
Sbjct: 582 LDEVVAAIHTIGVMAERIAEGSTQQSQAVGEIRSHSERIHALGGENLRLIG 632
>sp|P21822|MCPS_ENTAE METHYL-ACCEPTING CHEMOTAXIS SERINE TRANSDUCER >gi|95558|pir||C32302
serine transducer tse - Enterobacter aerogenes
>gi|148349|gb|AAA24797.1| (M26411) tse [Enterobacter
aerogenes]
Length = 557
Score = 132 bits (329), Expect = 1e-29
Identities = 100/358 (27%), Positives = 173/358 (47%), Gaps = 44/358 (12%)
Query: 370 IGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETF 429
+ A++ + + LV LN + + ++R+A GDL+ + V T
Sbjct: 206 LAAIVGVWMGIHHILVRPLNRMIEHIKRIASGDLTQPIPV------------------TS 247
Query: 430 RESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGM 489
R IG L A +L + ++ E ++ V + + A N+++
Sbjct: 248 RNEIGVL----------AASLKHMQNELIETVSGVRQGADRSIDGASESAAGNNDLSSRT 297
Query: 490 RLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVA 549
A EE+ +ME+ + V + A + SQ A + + +++ + ET+ +A
Sbjct: 298 EQQAAALEETAASMEQLTATVKQNAENARQASQLALSASETAQKGGKVVANVVETMHDIA 357
Query: 550 EMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAAD 609
S+ I +IT VI IA QTN+LALNAA+EAARAGE GR FAVVA E+R LA+ S QAA
Sbjct: 358 SSSQKIADITGVIDVIAFQTNILALNAAVEAARAGEQGRAFAVVAGEVRNLAQRSAQAAK 417
Query: 610 NIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKE 669
IK++I+ + + SV+ ES+ DT+G + N T + + + + +
Sbjct: 418 EIKALIEDSVNRVDMG--------SVLVESA---GDTMGDIVNAVTRVTDIMGEIASASD 466
Query: 670 QIVRTQEEVDKALRAL-----ENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQE 722
+ R ++V +A+R + +N + E +A+A E +++ Q+ A+ L+ QE
Sbjct: 467 EQSRGIDQVGQAVREMDRVTQQNASLVEESASAAALEEQASLLTQSVAVFRLKSEGQE 524
>gi|10955066 mclA [Agrobacterium tumefaciens] >gi|8572698|gb|AAF77144.1|
(AF242881) mclA [Agrobacterium tumefaciens]
Length = 739
Score = 132 bits (329), Expect = 1e-29
Identities = 102/398 (25%), Positives = 179/398 (44%), Gaps = 59/398 (14%)
Query: 342 YAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEG 401
+ A+++ R+++ SE ++ ER A + + + +N ++ L R+A G
Sbjct: 389 FKENAISKIRIEEQSEEERRAADQERQRNDA---EKHELDRQIEFAVNELAGGLGRMARG 445
Query: 402 DLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAI 461
D+S+ + G L + ED F S+ L D+ + ++ ++
Sbjct: 446 DISSTIDTPFIGRLEQLRED-------FNRSMLRLQATMRDIRNNVEMIQSNGSEMAQSA 498
Query: 462 NQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGS 521
+ + +Q + + +++IT +R A+ +++ V I +
Sbjct: 499 GDLAKRTEQQAASLEETAAAVDQITVTVRSSAERAKD--------------VALIVRQAK 544
Query: 522 QKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAA 581
DE+ + + MSRIE+ SR+IE+I VI IA QTNLLALNA IEAA
Sbjct: 545 VSADESAVVVTNATDAMSRIEDA-------SRHIEQIIGVIDEIAFQTNLLALNAGIEAA 597
Query: 582 RAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSE 641
RAGE+G+GFAVVA E+R+LA+ S AA IK +I+K T E+
Sbjct: 598 RAGESGKGFAVVAMEVRELAQRSAAAAGEIKGLINKSTSEV------------------- 638
Query: 642 TLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEE 701
T G L L+QE + + + QIV + V+ RA + +++ +E ++ +
Sbjct: 639 ----TTGSL-----LVQEAGKALANISSQIVVISQHVEMIARASHDQSSALQEVNSTITQ 689
Query: 702 VSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+ Q A +EE A+ L + ++ F++
Sbjct: 690 IDQMTHQNAAMVEETTAASMALAAEADTLTTLISHFQL 727
>gb|AAG19717.1| (AE005058) Htr9 transducer; Htr9 [Halobacterium sp. NRC-1]
Length = 481
Score = 132 bits (329), Expect = 1e-29
Identities = 85/306 (27%), Positives = 154/306 (49%), Gaps = 17/306 (5%)
Query: 423 RSVTETFRESIGSLVEMANDLEK---RANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQ 479
R++TE + E+ ND+E+ + A+++ S ++ E + + V+ E +
Sbjct: 189 RNLTEFGDTLAAHITEVHNDVERLEAASQAVSESSAEIDELSTAQSTNVSTVATEVETLS 248
Query: 480 ETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMS 539
T+ EI V TS + R ++ S A ++ + + + D +E +Q+
Sbjct: 249 ATVQEIASTADEVVDTSATAERLADDGSAAASDAADMMADVATAADSVTSDVEALQN--- 305
Query: 540 RIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRK 599
RIE+ I+E+ +VIT IAEQTN+LALNA+IEAARAGE G GFAVVA+E++
Sbjct: 306 RIED-----------IDEVVDVITGIAEQTNMLALNASIEAARAGEEGEGFAVVAEEVKA 354
Query: 600 LAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQE 659
LAE+++ A +I+S++ +I + + V I ++ + D + I T ++
Sbjct: 355 LAEDAQSNAGHIESLVSEIQRDTADTVTDLVTTTDRIEDAVAQVEDAMASFEEIVTAVEA 414
Query: 660 TSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRA 719
T+E + V + ++ ++ A A++ T + ++ S E Q+A + +L +
Sbjct: 415 TAEGIEQVSDATNEQAASAEEIAAMVDETADLADDITTAVADIVSQTEAQSAMLHDLDES 474
Query: 720 AQELKD 725
EL D
Sbjct: 475 VSELHD 480
>gb|AAA23566.1| (M13463) methyl-accepting chemotaxis protein II [Escherichia coli]
Length = 553
Score = 132 bits (329), Expect = 1e-29
Identities = 90/354 (25%), Positives = 175/354 (49%), Gaps = 41/354 (11%)
Query: 373 LIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRES 432
L+ A+ + + L+ L I + +A G+L+N LT++ R E+ D+ + + + + ++
Sbjct: 205 LLVAWYGIRRMLLTPLAKIIAHIREIAGGNLANTLTIDGRSEMGDLAQSVSHMQRSLTDT 264
Query: 433 IGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLV 492
+ + E ++ + +A + D++ Q A+++ + ++ T+ + D R
Sbjct: 265 VTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQA 324
Query: 493 AQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMS 552
+Q ++ A++ +Q G + ++ + +T+ ++A+ S
Sbjct: 325 SQLAQS------------------ASDTAQHGGK----------VVDGVVKTMHEIADSS 356
Query: 553 RNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIK 612
+ I +I +VI IA QTN+LALNAA+EAARAGE GRGFAVVA E+R LA S QAA IK
Sbjct: 357 KKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIK 416
Query: 613 SIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQE---TSERMTTVKE 669
++I+ ++V G ++ + ET+ + + + + ++ E S+ + +
Sbjct: 417 ALIE-------DSVSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGID 469
Query: 670 QIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQEL 723
Q+ E+D R + A+ +E+ A+A + + T A+ R AA L
Sbjct: 470 QVALAVSEMD---RVTQQNASLVQESAAAAAALEEQASRLTQAVSAFRLAASPL 520
>sp|P07017|MCP2_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN II (MCP-II) (ASPARTATE
CHEMORECEPTOR PROTEIN) >gi|7428891|pir||QRECM4 aspartate
chemoreceptor protein - Escherichia coli
>gi|1736539|dbj|BAA15702.1| (D90830) Methyl-accepting
chemotaxis protein II (MCP-II) (Aspartate chemoreceptor
protein). [Escherichia coli] >gi|1736545|dbj|BAA15707.1|
(D90831) Methyl-accepting chemotaxis protein II (MCP-II)
(Aspartate chemoreceptor protein). [Escherichia coli]
>gi|1788195|gb|AAC74956.1| (AE000282) methyl-accepting
chemotaxis protein II, aspartate sensor receptor
[Escherichia coli K12]
Length = 553
Score = 132 bits (329), Expect = 1e-29
Identities = 90/354 (25%), Positives = 175/354 (49%), Gaps = 41/354 (11%)
Query: 373 LIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRES 432
L+ A+ + + L+ L I + +A G+L+N LT++ R E+ D+ + + + + ++
Sbjct: 205 LLVAWYGIRRMLLTPLAKIIAHIREIAGGNLANTLTIDGRSEMGDLAQSVSHMQRSLTDT 264
Query: 433 IGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLV 492
+ + E ++ + +A + D++ Q A+++ + ++ T+ + D R
Sbjct: 265 VTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQA 324
Query: 493 AQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMS 552
+Q ++ A++ +Q G + ++ + +T+ ++A+ S
Sbjct: 325 SQLAQS------------------ASDTAQHGGK----------VVDGVVKTMHEIADSS 356
Query: 553 RNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIK 612
+ I +I +VI IA QTN+LALNAA+EAARAGE GRGFAVVA E+R LA S QAA IK
Sbjct: 357 KKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIK 416
Query: 613 SIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQE---TSERMTTVKE 669
++I+ ++V G ++ + ET+ + + + + ++ E S+ + +
Sbjct: 417 ALIE-------DSVSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGID 469
Query: 670 QIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQEL 723
Q+ E+D R + A+ +E+ A+A + + T A+ R AA L
Sbjct: 470 QVALAVSEMD---RVTQQNASLVQESAAAAAALEEQASRLTQAVSAFRLAASPL 520
>emb|CAA70726.1| (Y09534) methyl-accepting chemotaxis proteins [Rhizobium
leguminosarum]
Length = 639
Score = 132 bits (329), Expect = 1e-29
Identities = 125/462 (27%), Positives = 203/462 (43%), Gaps = 73/462 (15%)
Query: 298 DTAINKMKMIVIQGFAV---GFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQ 354
DT++ + + FAV GF+ I A LV P++++ + +A G L
Sbjct: 187 DTSVLSLGTAIAALFAVSCFGFLAIRAWLV----------KPIKQMVTTMKVIAHGDLTS 236
Query: 355 VSEYLKQIRYLERDEIGALIQAFEA----------VSKDLVGTLNAISKKLERLAEGDLS 404
E + RDEIG++ +A + + KD + A + RLAE +
Sbjct: 237 TVEGT-----IRRDEIGSMARAVQIFKDNELRARDLGKDAETSRGANEIERARLAETE-- 289
Query: 405 NGLTVEVRGELRDIIEDIRSVTETFRE-SIGSLV-----EMANDLEK-RANALAQVSKDV 457
R RD+ E + E R + G+LV + A D E RAN A V++ +
Sbjct: 290 -------RQRARDMAEATSGLAEGLRHLADGNLVFSLDDKFAEDFEPLRANFNAAVAQ-L 341
Query: 458 TEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIA 517
E++ V+ A + + AQ + +++ A + E++ A+++ + V
Sbjct: 342 AESLRAVSNATESIDDGAQEISLSAQDLSRRTEHQAASLEQTAAALDQITQNVASSSKRT 401
Query: 518 NEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAA 577
E EA K ++S + ++ S I I VI IA QTNLLALNA
Sbjct: 402 AEARHVAIEANKSARHSGEVVSSAVAAMQRIERSSSRISSIVGVIDEIAFQTNLLALNAG 461
Query: 578 IEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIG 637
+EAAR+GEAG+GFAVVAQE+R+LA+ S AA IK +I DE+ V+
Sbjct: 462 VEAARSGEAGKGFAVVAQEVRELAQRSAHAAKEIKDLILNSVDEVSSGVK---------- 511
Query: 638 ESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTA 697
L+++T E + + +QIV ++D A +A+ E
Sbjct: 512 ------------------LVRDTGEALKIIVDQIVLINTQLDAVTAASNEQSATLFEVNR 553
Query: 698 SAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+ ++ +Q A EE A+ L V ++R IV +F++
Sbjct: 554 TVNQMDQVTQQNAAMSEESTAASTALAIEVKQLRGIVAEFQI 595
>pir||E83325 probable chemotaxis transducer PA2561 [imported] - Pseudomonas
aeruginosa (strain PAO1) >gi|8307680|dbj|BAA96488.1|
(AB039332) chemotactic transducer CtpH [Pseudomonas
aeruginosa] >gi|9948621|gb|AAG05949.1|AE004684_4
(AE004684) probable chemotaxis transducer [Pseudomonas
aeruginosa]
Length = 568
Score = 132 bits (328), Expect = 2e-29
Identities = 104/369 (28%), Positives = 180/369 (48%), Gaps = 55/369 (14%)
Query: 380 VSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGEL----------RDIIEDIRSVTETF 429
V+++LV + + + + +L+ GD + + + EL RD + DI +
Sbjct: 237 VNRNLVRPVQRLIEHIAQLSHGDFGERIEIRRKDELGKLALAANTLRDFLVDI---FDRL 293
Query: 430 RESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGM 489
R S L + L A+ +A +++ +QV A+Q++S AQ
Sbjct: 294 RRSTRDLDSASGSLNAIASLMAAGTREQFSRTDQVATAMQEMSATAQE------------ 341
Query: 490 RLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKR-IEDIQHMMSRIEETVSKV 548
VA+ + ++ RA +E A++ +Q+G++ ++ I I M I+ TV +
Sbjct: 342 --VARYAGDAARAADE-----------ADDSAQRGEDVMEETIRSIGEMRKEIDHTVEVI 388
Query: 549 AEM---SRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESK 605
++ S I ++ +VI IAEQTNLLALNAAIEAARAG+AGRGFAVVA E+R LA+ +
Sbjct: 389 RQLESDSGRIGKVLDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRTLAQRTA 448
Query: 606 QAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIAT---LLQETSE 662
++ I IID + + A A + G S +E + + L I +++ +
Sbjct: 449 ESIAEIHQIIDTVQNGAVNAARAIESGQSRSEAGAEQVANAGAMLRQITASVESIRDMNR 508
Query: 663 RMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQE 722
++ T E+ EE+ + L + ++A+S +E +EQ AA +L + +
Sbjct: 509 QIATAAEEQTAVAEEISRNLTEIASIASSNQE----------QVEQTEAASRDLHGLSAQ 558
Query: 723 LKDMVGRMR 731
L D + R+R
Sbjct: 559 LGDALQRLR 567
>pir||H82503 methyl-accepting chemotaxis protein VCA0068 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657452|gb|AAF95982.1| (AE004350) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 547
Score = 132 bits (328), Expect = 2e-29
Identities = 85/341 (24%), Positives = 167/341 (48%), Gaps = 21/341 (6%)
Query: 384 LVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDL 443
+V + + + + +A+G+L E E+ + D+ + R+++ SLV ++ D+
Sbjct: 220 IVTPIRQLQQTVREIAKGNLLVKAQEEGNNEITLLARDVNATVTQLRQTVESLVRISTDV 279
Query: 444 EKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAM 503
+ LA V + +Q + ++QV+ + Q T +TD
Sbjct: 280 ASASTELATVMTQASVNSDQEKQEVEQVASAVNQLQSTAQSVTDHAHSA----------- 328
Query: 504 EEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVIT 563
GA + +A++ + +E+ + + + + V+++ E S I +T VI
Sbjct: 329 ---DGAAQQANQLASQSLRMFEESHRATAKMADQLREAAQVVNQLKEQSERIGNVTEVIR 385
Query: 564 SIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIK 623
SI+EQTNLLALNAAIEAARAGE+GRGFAVVA E+R LA ++ + I++II+++ ++
Sbjct: 386 SISEQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQTSTQEIQAIIEELQNQSN 445
Query: 624 EAVEATKEGVSVIGESSETLRDTIGYLANI---ATLLQETSERMTTVKEQIVRTQEEVDK 680
A + +S++ ++ L I + L + + ++ T E+ + +++++
Sbjct: 446 TANSSMHSSLSLLEQNQSLAAKVSASLTEINHSISALGQINAQVATASEEQSQVTKDINR 505
Query: 681 ALRALENLAA----SAEETTASAEEVSSAIEQQTAAIEELR 717
L + L + ++ A++ E+S EQQ ++ R
Sbjct: 506 NLSNIYELVSQNVTGITQSAAASHELSDLAEQQHQQLQYFR 546
>pir||F82383 methyl-accepting chemotaxis protein VCA1056 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658501|gb|AAF96950.1| (AE004431) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 770
Score = 132 bits (328), Expect = 2e-29
Identities = 101/371 (27%), Positives = 178/371 (47%), Gaps = 33/371 (8%)
Query: 378 EAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLV 437
E + K L+ + I + LA + NG++ +R + I R T R S
Sbjct: 415 ELIMKVLIAIV--IGAVIATLAAWMVGNGISKPIRDSISQIQRMSRDNDLTVRLS----E 468
Query: 438 EMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSE 497
+ ++++ + A AL ++ + + I Q +++ Q + + + + ++
Sbjct: 469 QGSDEIRQLAQALNRMLSHLQDTICQFAHTTDKLNSHTQTITHNMTGTRNSVSEQHERTD 528
Query: 498 ESVRAMEEFSGAVTEVVSIAN-------EGSQKG-------DEALKRIEDIQHMMSRIEE 543
V A+ E S ++TEV A E +QKG +E + + I M+ E
Sbjct: 529 SVVTAVNEMSASITEVSEFAQRAATFVQEANQKGHGGVSVGNELARDMTSINQQMASAVE 588
Query: 544 TVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEE 603
++++ S++I + +VI +IAEQTNLLALNAAIEAARAGE GRGFAVVA E+R LA +
Sbjct: 589 AIARLNHESQSIASVLDVIQAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAAK 648
Query: 604 SKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSE- 662
++ + + I++ ID++ E + V +E + + T L I +L E +E
Sbjct: 649 TQTSTEEIRTKIDRLQKETQSVVNCIEEANNTVVRGVATCHSNTDMLKQIVDMLNELNEM 708
Query: 663 --RMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAA 720
++ T EQ EE++ + ++ +++AS V+ + + A + EL A
Sbjct: 709 NIQIATATEQQRGVTEEINANITSISDVSAS----------VTVQVGEVNAIVNELSDEA 758
Query: 721 QELKDMVGRMR 731
EL +G+ R
Sbjct: 759 MELSKRMGQFR 769
>pir||A83624 probable chemotaxis transducer PA0176 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946009|gb|AAG03566.1|AE004455_7 (AE004455) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 679
Score = 132 bits (328), Expect = 2e-29
Identities = 110/416 (26%), Positives = 197/416 (46%), Gaps = 89/416 (21%)
Query: 338 EKLKYAAQALAEGRL-KQVSEYLKQIRYLE-RDEIGALIQAFEAVSKDLVGTLNAISKKL 395
+++ QA A G K+V E K+ +L ++ +L+ + +D +S+ L
Sbjct: 294 QEVSQLVQAAAAGDFSKRVEEAGKEGFFLRLAKDLNSLVDTADRGLRD-------VSRML 346
Query: 396 ERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSK 455
LA+GDL+ + + +G + G L + +ND A +L+++
Sbjct: 347 GALAQGDLTQRIEADYQG------------------TFGQLKDFSNDT---AQSLSRMLG 385
Query: 456 DVTEAINQVNEAIQQVS-----IEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAV 510
+ EA + +N A +++ + A+ +Q+ A + EE+ +MEE + V
Sbjct: 386 QIREAADTINTAASEIASGNAELSARTEQQ------------ASSLEETASSMEELTSTV 433
Query: 511 TEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTN 570
A + + A + ++ ++ T+S + E +R I +I VI IA QTN
Sbjct: 434 KLNAENARQANSLAANASEVATQGGTVVQKVVSTMSSINESARKIADIIGVIDGIAFQTN 493
Query: 571 LLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATK 630
+LALNAA+EAARAGE GRGFAVVA E+R LA+ S AA IK++I ++V+ +
Sbjct: 494 ILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAAAAKEIKTLIS-------DSVDKVE 546
Query: 631 EGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAA 690
G +++ ++ +T+ D + + + ++ E + AA
Sbjct: 547 NGNTLVAQAGQTMSDIVVAIRRVTDIMSEIA---------------------------AA 579
Query: 691 SAEETTASAEEVSSAI-------EQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
SAE++T EEV+SA+ +Q A +EE AA+ +++ G + Q V F++
Sbjct: 580 SAEQSTG-IEEVNSAVSQMDDMTQQNAALVEEAAAAAEAMQEQAGLLNQSVAVFRL 634
>pir||F82148 methyl-accepting chemotaxis protein VC1859 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656388|gb|AAF95007.1| (AE004261) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 706
Score = 131 bits (327), Expect = 2e-29
Identities = 137/607 (22%), Positives = 257/607 (41%), Gaps = 110/607 (18%)
Query: 152 EKGGAIITEPYR-DAATGQWVIT-YAVPVYVNGQFKGVIGLDVFVSTLLNETKKIK---L 206
E+ IT P + TG+++ T +VP+ ++G G G+D+ ++ L+ T+K
Sbjct: 190 EQASPCITSPRMVEFETGRYLATSLSVPILIDGVAIGFYGIDLTLAPLIGITQKSDNNLF 249
Query: 207 GKTGYIAIIDQNGMTLVHPNEEFINKLNIFQVPELK--DLADELKKGK------DEGYVL 258
G ++I+ +N LV + F+ FQ L ++ L+ G+ ++G L
Sbjct: 250 DGQGKVSIVSENN-ALVASDAAFLTLGETFQSENLSRSTVSSLLQAGQVNTQWSEDGQWL 308
Query: 259 YTFQGIKKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVI 318
F IK + W ++ +P + +++ + VG ++
Sbjct: 309 VVFAPIK-------VANQNWGIIFEMPRQSVMQDAEQLDILLTEQLERGIRSELMVGTLM 361
Query: 319 IVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFE 378
+V +G L+
Sbjct: 362 VV-------------------------------------------------VGLLVVTLM 372
Query: 379 AVSKDLVGTLNAISKKLERLA--EGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSL 436
A+ LV + A++++L+ ++ EGDL+ L V E+ + + + + I +
Sbjct: 373 AMR--LVRPIRAVAERLQDISSGEGDLTQRLQVNSADEIGQLAQGFNLFMDKLQPIIRRV 430
Query: 437 VEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTS 496
V+ V QV ++ ++ Q + ++ + + QTS
Sbjct: 431 VDNTGQ--------------VVSTTEQVKSTVESTRRSSEAQFKEVDSVATAAEEMTQTS 476
Query: 497 EESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIE-DIQHMMSRIEETVSKVAEMSRN- 554
V + A ++ A +Q GDE ++ + + ++ R+ V V E++RN
Sbjct: 477 AHVVENAQRAVNAASD----AQRAAQTGDEVIRHSQMQMNQLVDRMNLAVPVVEELARNN 532
Query: 555 --IEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIK 612
I EI +VI I+EQTNLLALNAAIEAARAGE GRGFAVVA E+R LA ++ + I+
Sbjct: 533 TGIIEILSVIEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASVGEIR 592
Query: 613 SIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIV 672
S+I+K+ T++ V I S+ET + T +A+ T L + + E
Sbjct: 593 SVINKVE-------LGTQDVVKAIQGSNETAQATAEQVADAVTQLNRVFSAIHAINEM-- 643
Query: 673 RTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQ 732
++ +A + + ++A ++ + ++S+ I +T A E + +++ + +
Sbjct: 644 --SHQIVQAAQDQQTVSAQVTQSVVNIRDLSAQILSETEASE---KVGEQIARLSFEQQT 698
Query: 733 IVGKFKV 739
+VG+FKV
Sbjct: 699 LVGQFKV 705
>pir||F81297 probable MCP-type signal transduction protein Cj1506c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968931|emb|CAB73927.1| (AL139078) putative MCP-type
signal transduction protein [Campylobacter jejuni]
Length = 700
Score = 131 bits (327), Expect = 2e-29
Identities = 130/534 (24%), Positives = 241/534 (44%), Gaps = 57/534 (10%)
Query: 172 ITYAVPVYVN-GQFKGVIGLDVF---VSTLLNETKKIKLGKTGYIAIIDQNGMTLVHPNE 227
+ A+P++ Q GVIG+ + ++T L + K K + +++ +G +HPN+
Sbjct: 196 VNVAIPIFDRKNQVVGVIGMTLDFSDIATYLLDPKGQKYDGELRV-LLNSDGFMAIHPNK 254
Query: 228 EFINKLNIFQVPELKDLADELK---KGKDEGYVLYTFQGIKKIGGYKRLKT--TGWIVVA 282
+ K N+ + K + K +GK+ + G K + W V+
Sbjct: 255 NLVLK-NLKDINPNKGAQETYKAISEGKNGVFNYIASDGDDSYAAINSFKVQDSSWAVLV 313
Query: 283 TVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYK-----IASNTLAPL 337
T P + P+ K+++I++ F+ I +L V+Y +AS L
Sbjct: 314 TAPKYSVFKPL--------KKLQLIIL---GASFIFIFVVLGVVYYCVRKIVASRLPVIL 362
Query: 338 EKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGAL----IQAFEAVSKDLVGTLNAISK 393
L+ + L +++ K I DE+GA+ + E + L NA+ +
Sbjct: 363 SSLESFFRFLNHEKIEP-----KAIEIRANDELGAMGRIINENIEKIQISLEQDQNAVDE 417
Query: 394 KLERLAE---GDLSNGLTVE-VRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANA 449
++ E G+L+ +T + +L ++ + + + + + IGS + N + A
Sbjct: 418 SVQTAREIEKGNLTARITKNPINPQLVELKDVLNRMLDVLQSKIGSNMNEINRVFDSYKA 477
Query: 450 LAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGA 509
L TE N E +I + ++ + ++ + +A SEE +M++ +
Sbjct: 478 L----DFSTEVFNAKGEVEITTNILGKEIKKMLLASSNFAKDLANQSEELKNSMQKLADG 533
Query: 510 VTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQT 569
+N + +++ +E+I M + +VA + +I+ I NVI IAEQT
Sbjct: 534 -------SNAQASSLEQSAAAVEEINSSMQNVSGKTVEVASQADDIKNIVNVIKDIAEQT 586
Query: 570 NLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEAT 629
NLLALNAAIEAARAGE GRGFAVVA E+R+LAE + ++ I++ I+ + + E E+
Sbjct: 587 NLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKSLSEIEANINILVQSVNEVAESV 646
Query: 630 KE---GVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDK 680
KE G++ I ++ L +A + + + + I+ E+V+K
Sbjct: 647 KEQTAGITQINDAIAQLETVTKENVEVANVTNNITNEVNQIAAAIL---EDVNK 697
>emb|CAA23676.1| (V00373) serine chemoreceptor [Escherichia coli]
>gi|223623|prf||0903250A protein,tsr transducer
[Escherichia coli]
Length = 536
Score = 131 bits (327), Expect = 2e-29
Identities = 91/370 (24%), Positives = 164/370 (43%), Gaps = 56/370 (15%)
Query: 370 IGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETF 429
+ + + + LV +N + + +A GDL + V+ E+ + E +R +
Sbjct: 204 LAVIFAVWFGIKASLVAPMNRLIDSIRHIAGGDLVKPIEVDGSNEMGQLAESLRHMQ--- 260
Query: 430 RESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGM 489
G L+ D+ ANA+ + ++ N ++ +Q
Sbjct: 261 ----GELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQ------------------ 298
Query: 490 RLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVA 549
A + EE+ +ME+ + V + A + S A + + ++ + +T+ ++
Sbjct: 299 ---AASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDIS 355
Query: 550 EMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAAD 609
S+ I +I +VI IA QTN+LALNAA+EAARAGE GRGFAVVA E+R LA+ S QAA
Sbjct: 356 TSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAR 415
Query: 610 NIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKE 669
IKS+I+ D++G + +TL++ E M +
Sbjct: 416 EIKSLIE----------------------------DSVGKVDVGSTLVESAGETMAEIVS 447
Query: 670 QIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGR 729
+ R + + + A + + ++ + E+ +Q A +EE AA L++ R
Sbjct: 448 AVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASR 507
Query: 730 MRQIVGKFKV 739
+ + V F++
Sbjct: 508 LTEAVAVFRI 517
>sp|P02942|MCP1_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN I (MCP-I) (SERINE CHEMORECEPTOR
PROTEIN) >gi|7428892|pir||QRECS serine chemoreceptor
protein - Escherichia coli >gi|148077|gb|AAA24700.1|
(J01718) methyl-accepting chemotaxis protein I
[Escherichia coli] >gi|2367378|gb|AAC77311.1| (AE000506)
methyl-accepting chemotaxis protein I, serine sensor
receptor [Escherichia coli K12]
Length = 551
Score = 131 bits (327), Expect = 2e-29
Identities = 91/370 (24%), Positives = 164/370 (43%), Gaps = 56/370 (15%)
Query: 370 IGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETF 429
+ + + + LV +N + + +A GDL + V+ E+ + E +R +
Sbjct: 204 LAVIFAVWFGIKASLVAPMNRLIDSIRHIAGGDLVKPIEVDGSNEMGQLAESLRHMQ--- 260
Query: 430 RESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGM 489
G L+ D+ ANA+ + ++ N ++ +Q
Sbjct: 261 ----GELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQ------------------ 298
Query: 490 RLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVA 549
A + EE+ +ME+ + V + A + S A + + ++ + +T+ ++
Sbjct: 299 ---AASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDIS 355
Query: 550 EMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAAD 609
S+ I +I +VI IA QTN+LALNAA+EAARAGE GRGFAVVA E+R LA+ S QAA
Sbjct: 356 TSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAR 415
Query: 610 NIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKE 669
IKS+I+ D++G + +TL++ E M +
Sbjct: 416 EIKSLIE----------------------------DSVGKVDVGSTLVESAGETMAEIVS 447
Query: 670 QIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGR 729
+ R + + + A + + ++ + E+ +Q A +EE AA L++ R
Sbjct: 448 AVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASR 507
Query: 730 MRQIVGKFKV 739
+ + V F++
Sbjct: 508 LTEAVAVFRI 517
>pir||S56581 methyl-accepting chemotaxis protein I - Escherichia coli
>gi|537197|gb|AAA97252.1| (U14003) CG Site No. 63;
alternate gene name cheD [Escherichia coli]
Length = 551
Score = 131 bits (326), Expect = 3e-29
Identities = 91/370 (24%), Positives = 164/370 (43%), Gaps = 56/370 (15%)
Query: 370 IGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETF 429
+ + + + LV +N + + +A GDL + V+ E+ + E +R +
Sbjct: 204 LAVIFAVWFGIKASLVAPMNRLIDSIRHIAGGDLVKPIEVDGSNEMGQLAESLRHMQ--- 260
Query: 430 RESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGM 489
G L+ D+ ANA+ + ++ N ++ +Q
Sbjct: 261 ----GELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQ------------------ 298
Query: 490 RLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVA 549
A + EE+ +ME+ + V + A + S A + + ++ + +T+ ++
Sbjct: 299 ---AASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDIS 355
Query: 550 EMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAAD 609
S+ I +I +VI IA QTN+LALNAA+EAARAGE GRGFAVVA E+R LA+ S QAA
Sbjct: 356 TSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAR 415
Query: 610 NIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKE 669
IKS+I+ D++G + +TL++ E M +
Sbjct: 416 EIKSLIE----------------------------DSVGKVDVGSTLVESAGETMAEIVS 447
Query: 670 QIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGR 729
+ R + + + A + + ++ + E+ +Q A +EE AA L++ R
Sbjct: 448 AVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEXASR 507
Query: 730 MRQIVGKFKV 739
+ + V F++
Sbjct: 508 LTEAVAVFRI 517
>sp|Q48316|HTR3_HALSA HALOBACTERIAL TRANSDUCER PROTEIN III >gi|1435129|emb|CAA64840.1|
(X95588) halobacterial transducer protein III
[Halobacterium salinarum]
Length = 481
Score = 131 bits (325), Expect = 4e-29
Identities = 84/306 (27%), Positives = 153/306 (49%), Gaps = 17/306 (5%)
Query: 423 RSVTETFRESIGSLVEMANDLEK---RANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQ 479
R++TE + E+ ND+E+ + A+++ S ++ E + + V+ E +
Sbjct: 189 RNLTEFGDTLAAHITEVHNDVERLEAASQAVSESSAEIDELSTAQSTNVSTVATEVETLS 248
Query: 480 ETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMS 539
T+ EI V TS + R ++ S A ++ + + + D +E +Q+
Sbjct: 249 ATVQEIASTADEVVDTSATAERLADDGSAAASDAADMMADVATAADSVTSDVEALQN--- 305
Query: 540 RIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRK 599
RIE+ I+E+ +VIT IAEQTN+LALNA+IEAARAGE G GFAVVA+E++
Sbjct: 306 RIED-----------IDEVVDVITGIAEQTNMLALNASIEAARAGEVGEGFAVVAEEVKA 354
Query: 600 LAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQE 659
LAE+++ A +I+S++ +I + + V I ++ + D + I T ++
Sbjct: 355 LAEDAQSNAGHIESLVSEIQRDTADTVTDLVTTTDRIEDAVAQVEDAMASFEEIVTAVEA 414
Query: 660 TSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRA 719
T+E + V + ++ ++ A A++ T + ++ S E Q+ + +L +
Sbjct: 415 TAEGIEQVSDATNEQAASAEEIAAMVDETADLADDITTAVADIVSQTEAQSTILXDLDES 474
Query: 720 AQELKD 725
EL D
Sbjct: 475 VSELHD 480
>pir||H82402 methyl-accepting chemotaxis protein VCA0906 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658341|gb|AAF96803.1| (AE004418) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 578
Score = 131 bits (325), Expect = 4e-29
Identities = 96/408 (23%), Positives = 194/408 (47%), Gaps = 36/408 (8%)
Query: 334 LAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGAL----IQAFEAVSKDLVGTLN 389
+AP+++ + + Q +E +K + + + I + V++ +V ++
Sbjct: 196 MAPIDRFFQELETRTAQQFNQAAEQVKSTVLIGNISLVVVAIIAIIGYVVVNRKIVTPID 255
Query: 390 AISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANA 449
++ L+R D ++ LT+ V + D + I S GS + N + ++
Sbjct: 256 RMASVLQR---ADDNSDLTLRVEEKSDDELAVIGRTINKVLGSYGSTISKINQVNHTISS 312
Query: 450 LAQVSKDVTEAINQVNEAIQQVSIEAQRQQE------TINEITDGMRLVAQTSEESVRAM 503
++ + +T+ Q + + +Q+ QE + E+T + V+Q S
Sbjct: 313 ISDTIRSITD---------QNMKMSSQQDQELEMAATAMEEMTSALSSVSQ----STNMA 359
Query: 504 EEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVIT 563
EE++G+ + AN Q ++ ++ D+ + E + ++A S N+ + +VI
Sbjct: 360 EEYAGSAEKE---ANNSKQVFEKTIREFADLDGEFQKTSEIIQQLATESNNVGNVLDVIK 416
Query: 564 SIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIK 623
+IAEQTNLLALNAAIEAARAGE GRGFAVVA E+R LA+ ++++ I+++I ++
Sbjct: 417 AIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMISM----LQ 472
Query: 624 EAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALR 683
E E + + + V + ++ R +G +Q +++ + + I EE L
Sbjct: 473 EKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNTSIAAATEE---QLT 529
Query: 684 ALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMR 731
+ ++++ + E++ AI+Q + +L+R +L + +R
Sbjct: 530 VSDEISSNLSTIKTLSGEMNLAIKQLGPVVVDLQRNVDDLNSAIAHIR 577
>gb|AAC46420.1| (AF036168) putative methyl accepting chemotaxis protein [Rhizobium
leguminosarum]
Length = 625
Score = 131 bits (325), Expect = 4e-29
Identities = 103/406 (25%), Positives = 183/406 (44%), Gaps = 63/406 (15%)
Query: 340 LKYAAQALAEGRLKQVSEYLKQ----IRYLERDEIGALIQAFE----------AVSKDLV 385
+ YA +A G + E +Q + LE++ + +A + A + L
Sbjct: 235 IPYAGRADEVGEMAGAVEIFRQNALNVVRLEKNPLNPAARAMQRAPHPSSAPNARREQLR 294
Query: 386 GTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEK 445
+ + L RLA GD+S L+ + E + ED + +IG++++ ++
Sbjct: 295 FATTTLGEGLRRLASGDISFQLSEQFAAEYEALREDFNASLRQLGATIGAVLQTVYSIDN 354
Query: 446 RANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEE 505
+A ++D+++ Q A + EE+ A+EE
Sbjct: 355 GTGEIASAAQDLSKRTEQQ----------------------------AASLEETAAALEE 386
Query: 506 FSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSI 565
+ VT +E EA + ++S+ E + ++ + S+ I I I I
Sbjct: 387 ITSNVTMATKRTDEARNVAKEADISAQRSAAVVSQAEGAMRRIEDSSQQISNIIGAIDEI 446
Query: 566 AEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEA 625
A QTNLLALNA +EAARAGEAG+GFAVVAQE+R+LA+ + QAA IK I K + +++
Sbjct: 447 AFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRAAQAAKEIKGFIQKSSADVEN- 505
Query: 626 VEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRAL 685
GV ++ E+ +L+ Y+ +I L+ + T+ +EQ L
Sbjct: 506 ------GVKLVLETGTSLKSIGEYVVHINQLMDAIA---TSAREQST-----------GL 545
Query: 686 ENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMR 731
+ + + + ++ ++ +EQ TAA+ L A L+D+V + +
Sbjct: 546 AEINTAVNQMDQATQQNAAMVEQSTAAVASLSSEAGRLRDLVNQFQ 591
>pir||H82379 methyl-accepting chemotaxis protein VCA1092 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658538|gb|AAF96984.1| (AE004434) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 678
Score = 130 bits (324), Expect = 5e-29
Identities = 92/355 (25%), Positives = 177/355 (48%), Gaps = 39/355 (10%)
Query: 391 ISKKLERLAEGDLSNGL-TVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDL------ 443
+ +++ +GDL + + T G +R++ + I ++ T E +G + + + +
Sbjct: 289 VESLIQKAIKGDLHDRINTSGYNGFMRELGDGINNLLNTLVEPLGQCITVMSRVAEGDLN 348
Query: 444 ----EKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDG-----MRLVAQ 494
E+ +++ V +I + + ++++ + R EI DG R+ AQ
Sbjct: 349 TSMSEEYQGEFGRLASAVNASIVNLRNMVDKITVSSARVATASTEIADGNNDLSQRVEAQ 408
Query: 495 TS--EESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMS 552
S EE+ +MEE + V + A + + +A K+ ++ + + S
Sbjct: 409 ASNLEETAASMEEITATVRQNADNAKDANLLATDAAKKAARGGEVVGEAISAMGAINTAS 468
Query: 553 RNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIK 612
+ I +I +VI IA QTNLLALNAA+EAARAGE GRGFAVVA E+R LA+ S AA IK
Sbjct: 469 KKIADIISVIDEIAFQTNLLALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAGAAKEIK 528
Query: 613 SIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIV 672
+I+ ++V+ EG ++ ES TL++ + + ++ L+ + + I
Sbjct: 529 GLIN-------DSVDKVNEGSRLVNESGSTLKEIVEAVVRVSDLIAQIAASSVEQSTGI- 580
Query: 673 RTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMV 727
+E+++A+ A++ + ++ +S +E+ +AA + L+ +EL +++
Sbjct: 581 ---DEINRAIAAMDEM----------TQQNASLVEETSAASQSLKDEGKELLNLM 622
>pir||D82386 methyl-accepting chemotaxis protein VCA1034 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658478|gb|AAF96929.1| (AE004429) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 666
Score = 129 bits (322), Expect = 8e-29
Identities = 107/425 (25%), Positives = 190/425 (44%), Gaps = 33/425 (7%)
Query: 321 AILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAV 380
A+L+ ++ ++ + L KL A+ G + Q S L + + A A
Sbjct: 269 ALLIQNQQVDASLASSLAKLDDMAKYA--GSIAQQSRMLADAAVSSANFWIMAVSAISAA 326
Query: 381 SKDLVG--TLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVE 438
++G T +I K L+++ ++ L RG++ R + R G+L
Sbjct: 327 VALVIGYTTARSIQKPLQKI-----NHELAYMARGDMT------RRINYPTRCEFGALSR 375
Query: 439 MANDL-EKRANALAQVSKDVTEAINQVN---EAIQQVSIEAQRQQETINEITDGMRLVAQ 494
+ L +K L+Q++ +N+ + E ++ Q Q+ +++ + +
Sbjct: 376 SIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQTDQVAAAITELEV 435
Query: 495 TSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRN 554
++ E R+ + V + A +G QK + E + M K+ E S N
Sbjct: 436 SATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESAVGITHKLGEFSNN 495
Query: 555 IEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSI 614
I I +VI IAEQTNLLALNAAIEAARAG+AGRGFAVVA E+R LA ++ + + I+ +
Sbjct: 496 IGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALATRTQTSTEEIQHM 555
Query: 615 IDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRT 674
I+ + + K+ VE V+G S E R + + + LQ ++RM +KE
Sbjct: 556 IENLQESSKQVVE-------VMGRSQEQTRACVEQTREMDSALQSIADRMGAIKEM---- 604
Query: 675 QEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIV 734
D+ A + ++ ++ + E +++ L D+ + +Q++
Sbjct: 605 ---ADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLI 661
Query: 735 GKFKV 739
FKV
Sbjct: 662 AHFKV 666
>pir||E82222 methyl-accepting chemotaxis protein VC1248 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655731|gb|AAF94407.1| (AE004204) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 536
Score = 129 bits (321), Expect = 1e-28
Identities = 89/360 (24%), Positives = 178/360 (48%), Gaps = 28/360 (7%)
Query: 380 VSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEM 439
+S+ ++ L+ I ++++A+GDL+ + V + EL + + I + +++ V+
Sbjct: 205 ISRAVIQPLDTIKDVMKKVAQGDLTAQIPVLGKDELGIVAQRINNSIAAVHDALVESVQS 264
Query: 440 ANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEES 499
A+ + + A +A +++ ++A+ + + Q++ + T+ ++ T+ ++
Sbjct: 265 ASSVAEAAIRIASSAEETSQAVVSQRDQLSQLATAMNQMTATVADVAGHAE---DTARDT 321
Query: 500 VRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEIT 559
+ A +E AN G + ++ I + + + V+K+ E I E+T
Sbjct: 322 LDASKE-----------ANLGDKDVHSSVDSIRALSVELGVATDQVNKLKEGVMQISEVT 370
Query: 560 NVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKIT 619
+VI+ I+EQTNLLALNAAIEAARAG+ GRGFAVVA E+R LA + + D I+++I+++
Sbjct: 371 SVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTHHSTDEIQTMINRLQ 430
Query: 620 DEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVD 679
A ++ ++ S T + L+ I +Q S++ T +
Sbjct: 431 QLAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSDKATQI------------ 478
Query: 680 KALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
A E +A AEE + ++ A + + A L +++L D+ ++ Q + FK+
Sbjct: 479 --ATAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAEESEKLADLSRQLDQKLTAFKL 536
>pir||H83445 probable chemotaxis transducer PA1608 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947573|gb|AAG04997.1|AE004588_10 (AE004588)
probable chemotaxis transducer [Pseudomonas aeruginosa]
Length = 541
Score = 129 bits (321), Expect = 1e-28
Identities = 101/357 (28%), Positives = 178/357 (49%), Gaps = 37/357 (10%)
Query: 381 SKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMA 440
++ + L + E +A GDL++ + R E ++ ++ + R++I + A
Sbjct: 211 TRSITQPLGEALRVAEVIASGDLTSRIDTSGRDEPAKLLVALQGMQAQLRQTIQQIGSSA 270
Query: 441 NDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESV 500
L A L+ V++ ++ Q N+ IQ + +NE+T + VA+ + +
Sbjct: 271 TQLASAAEELSAVTEQGNRSLTQQNDEIQMAAT-------AVNEMTAAVEEVARNASST- 322
Query: 501 RAMEEFSGAVTEVVSIANEGSQKGDE-ALKRIEDIQHMMSRIEET---VSKVAEMSRNIE 556
++ S + + +Q G + L+ ++ I+ M ++ T V +AE +++I
Sbjct: 323 ----------SDASSASEQSAQNGRQRVLETVQAIRLMSEEVDNTSALVGGLAEKAQDIS 372
Query: 557 EITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIID 616
++ +VI IAEQTNLLALNAAIEAARAGE GRGFAVVA E+R LA ++++ I+ +I
Sbjct: 373 KVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQESTREIEQMIA 432
Query: 617 KITDEIKEAVEATKEGVSVIGESSETLRDTIGYLAN-IATLLQETSER---MTTVKEQIV 672
I + AV A + SV + + + G N IA + + +ER + + EQ
Sbjct: 433 NIQEGTGAAVGA-MDSSSVRARNMLEIAEAAGLALNEIAERVGQINERTLVIASASEQQA 491
Query: 673 RTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGR 729
+ EVD+ L + +++ + S+ Q AA +EL + A +L +MV R
Sbjct: 492 QVAREVDRNLVNIRDISL----------QTSAGSNQTAAASQELSQLAIDLNNMVTR 538
>pir||C83184 probable chemotaxis transducer PA3708 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949872|gb|AAG07095.1|AE004789_15 (AE004789)
probable chemotaxis transducer [Pseudomonas aeruginosa]
Length = 542
Score = 129 bits (320), Expect = 1e-28
Identities = 102/356 (28%), Positives = 169/356 (46%), Gaps = 36/356 (10%)
Query: 388 LNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRA 447
+ I + L+ +A GDL+ L + R E I MA +L+
Sbjct: 219 IQKIVRSLDLMAGGDLTARLNLGRRDEFGAIETGFNG--------------MAEELKGLV 264
Query: 448 NALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFS 507
+ + S VT ++ ++ +Q A T EI R +A TS + VR M E S
Sbjct: 265 SQAQRSSVQVTTSVTEIAATSKQQQATATETAATTTEIGATSREIAATSRDLVRTMSEVS 324
Query: 508 GAVTEVVSIANEGSQKGDEALKRIED-IQHMMSRIEETVSKVA---EMSRNIEEITNVIT 563
GA + ++A G L R+E+ + H+M + +K+A E + NI ++ I
Sbjct: 325 GAAEQTSTLAGSGQL----GLARMEETMHHVMGAADLVNAKLAILNEKAGNINQVVTTIV 380
Query: 564 SIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIK 623
+A+QTNLL+LNAAIEA +AGE GRGFAVVA E+R+LA+++ A +I+ ++ EI+
Sbjct: 381 KVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEVRRLADQTAVATYDIEQMV----REIQ 436
Query: 624 EAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALR 683
AV A GV + + SE +R I + + E+++ + +Q+ V
Sbjct: 437 SAVSA---GVMGMDKFSEEVRRGIAEVGQV-------GEQLSQIIQQVQALAPRVQMVNE 486
Query: 684 ALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
++ A AE+ + ++ A Q ++ + A EL + +R V +FKV
Sbjct: 487 GMQAQATGAEQINQALVQLGEATGQTVESLRQASFAIDELNLVANGLRNGVSRFKV 542
>pir||H83286 probable chemotaxis transducer PA2867 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948956|gb|AAG06255.1|AE004713_4 (AE004713) probable
chemotaxis transducer [Pseudomonas aeruginosa]
Length = 490
Score = 128 bits (319), Expect = 2e-28
Identities = 102/360 (28%), Positives = 168/360 (46%), Gaps = 44/360 (12%)
Query: 387 TLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKR 446
TL + +E+ GDLS + ++ R E+ + ++ ++ +G++ A L++
Sbjct: 168 TLKDVMLHVEK--SGDLSARVPLQGRDEVGQMASAFNAMQAGYQRIVGTVAAAATKLDEG 225
Query: 447 ANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEF 506
A ALA+ ++ QV + + E + INE++ + +AQ + ++ +E
Sbjct: 226 AQALAR-------SMGQVRQGMLGQQSETDQTATAINEMSTTVFHIAQHAADTRDQSQEA 278
Query: 507 SGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIA 566
+A G Q I + + E + K+AE S+ I + NVI IA
Sbjct: 279 D-------RLAGAGQQAVSRVSASIAGLSQGVQDTAEMIQKLAEDSQKISGVVNVIHGIA 331
Query: 567 EQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAV 626
EQTNLLALNAAIEAARAGE GRGFAVVA E+R LA + + D I +I + ++AV
Sbjct: 332 EQTNLLALNAAIEAARAGEMGRGFAVVADEVRNLARRVQDSTDEITQMILALQSGTRDAV 391
Query: 627 EATKEG-------VSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVD 679
E +E VS G++ E L +AN ++E++ ++ EQ Q +V
Sbjct: 392 EFMQESSLKADGCVSQAGDAGEAL----AAIANAVAQMRESNTQIAVAAEQ----QSQV- 442
Query: 680 KALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
AEE T S + E E +Q+L D+ G + + +G+ ++
Sbjct: 443 ------------AEEMTRSVVGIRDVTELTVQQTVESAATSQQLVDLAGDLTRAIGQLRL 490
>sp|P05704|MCP3_ECOLI METHYL-ACCEPTING CHEMOTAXIS PROTEIN III (MCP-III) (RIBOSE AND
GALACTOSE CHEMORECEPTOR PROTEIN) >gi|7428893|pir||QREC3M
methyl-accepting chemotaxis protein III - Escherichia
coli >gi|1742320|dbj|BAA15044.1| (D90781)
Methyl-accepting chemotaxis protein III (MCP-III)
(Ribose and galactose chemoreceptor protein).
[Escherichia coli] >gi|1742331|dbj|BAA15053.1| (D90782)
Methyl-accepting chemotaxis protein III (MCP-III)
(Ribose and galactose chemoreceptor protein).
[Escherichia coli] >gi|1787690|gb|AAC74503.1| (AE000239)
methyl-accepting chemotaxis protein III, ribose sensor
receptor [Escherichia coli K12]
>gi|4481751|gb|AAA81329.2| (K02073) Trg sensory
transducer protein [Escherichia coli]
Length = 546
Score = 127 bits (316), Expect = 4e-28
Identities = 92/355 (25%), Positives = 170/355 (46%), Gaps = 42/355 (11%)
Query: 370 IGALIQA-------FEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDI 422
IGA + A F + + ++ L ++++E++A GDL+ R E+ + +
Sbjct: 205 IGAFVLALVMTLITFMVLRRIVIRPLQHAAQRIEKIASGDLTMNDEPAGRNEIGRLSRHL 264
Query: 423 RSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETI 482
+ + + ++G++ + A ++ + + ++ + D++ + AI+Q +
Sbjct: 265 QQMQHSLGMTVGTVRQGAEEIYRGTSEISAGNADLSSRTEEQAAAIEQTAA--------- 315
Query: 483 NEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIE 542
+ME+ + V + A+ S+ EA + D +S +
Sbjct: 316 -------------------SMEQLTATVKQNADNAHHASKLAQEASIKASDGGQTVSGVV 356
Query: 543 ETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAE 602
+T+ ++ S+ I EIT VI SIA QTN+LALNAA+EAARAGE GRGFAVVA E+R LA
Sbjct: 357 KTMGAISTSSKKISEITAVINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAS 416
Query: 603 ESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSE 662
S QAA I+ +I E ++ + V+ G++ T+ D + + +I + S+
Sbjct: 417 RSAQAAKEIEGLI----SESVRLIDLGSDEVATAGKTMSTIVDAVASVTHIMQEIAAASD 472
Query: 663 RMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELR 717
+ Q+ + E+DK + A+ EE +A+A + + T A++ R
Sbjct: 473 EQSRGITQVSQAISEMDK---VTQQNASLVEEASAAAVSLEEQAARLTEAVDVFR 524
>pir||D75590 methyl-accepting chemotaxis protein - Deinococcus radiodurans
(strain R1) >gi|6460728|gb|AAF12433.1|AE001863_58
(AE001863) methyl-accepting chemotaxis protein
[Deinococcus radiodurans]
Length = 743
Score = 127 bits (316), Expect = 4e-28
Identities = 93/430 (21%), Positives = 204/430 (46%), Gaps = 31/430 (7%)
Query: 312 FAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIG 371
F + +++ A+ +++ + PL +L A++ L+ G L + +DE+
Sbjct: 333 FGLLLLLLGAVAALLFALMRAITRPLSQLTDASRQLSAGDLNV------DVPVTTQDELA 386
Query: 372 ALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRD--------IIEDIR 423
L ++F + +L + ++ E + + G ++V ++ D + +D+
Sbjct: 387 LLSRSFNDAAAELRRNQLRVDQEREEAQQMQSNIGEFLDVTMDIADGDLTRRGKVTDDVL 446
Query: 424 -SVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETI 482
+V ++ +G L + +++ + ++ Q S + Q+ + Q + +++R E
Sbjct: 447 GNVVDSINLMVGELADTLREVQGASQSVNQGSAQMLTTTAQIGQGSQLTAEQSRRLAERA 506
Query: 483 NEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIE 542
EI+ ++ +A+++++S A ++ + + +G Q L+ + I+ +
Sbjct: 507 AEISLRIQDLARSAQDSAAAAQQ-------ALQTSQQGQQAVQGTLQGMAAIREGTQDVA 559
Query: 543 ETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAE 602
+T+ ++E S I+ I + IT I+ QTNLL+L+A+IEAA AGEAG FAVVA E+R+LAE
Sbjct: 560 QTMQALSERSEQIQGIVDTITQISSQTNLLSLHASIEAAGAGEAGSRFAVVADEVRQLAE 619
Query: 603 ESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSE 662
++ +A + ++I + +I + + + + + + + L + + Q ++
Sbjct: 620 QTNEATGRVAALITTLQSDIAQVRQGVQSSAAQVEKGYRVAEEAGSRLQELGDIAQRSA- 678
Query: 663 RMTTVKEQIVRTQEEVDKA-LRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQ 721
Q+ +V A R +E L ++ A AE ++++ A E+LR A
Sbjct: 679 -------QLAGQMSDVSGAQARDIEQLGQGVQDIAALAEGAQQSVQRGRGAAEQLRALAT 731
Query: 722 ELKDMVGRMR 731
+L + R R
Sbjct: 732 QLDQSLSRFR 741
>pir||C82206 methyl-accepting chemotaxis protein VC1403 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655898|gb|AAF94560.1| (AE004218) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 641
Score = 127 bits (316), Expect = 4e-28
Identities = 85/360 (23%), Positives = 181/360 (49%), Gaps = 8/360 (2%)
Query: 374 IQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESI 433
++ E+VS+ A + L+ L + ++ V L ++ +++R+ T+ + S
Sbjct: 290 LKGSESVSQAAQEQSAACEESLKSLDQQQIALDGAVTAAQSLDELTDELRTSTDIVKSS- 348
Query: 434 GSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVA 493
+ A +L + + S ++ A+NQ++ Q ++ + ++ +I G RL
Sbjct: 349 EEVAAAAEELSAGIEEINRSSNEIMGALNQISSGAQHMAKSVETGITSLTQIEQGARLGK 408
Query: 494 QTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSR 553
+ +E S++A E+ + E + +E E+ K + + M+ IE +SR
Sbjct: 409 ERAESSLKACEKMLTGIEENKTTVDEMILAITESTKAATENLNEMANIER-------ISR 461
Query: 554 NIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKS 613
I++I + I++++ QT +LA+N A+EAARAGE G+GFAVV+ +I+ LA ++ + A+ IK
Sbjct: 462 QIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYGKGFAVVSTDIQNLANDAAENAEQIKD 521
Query: 614 IIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVR 673
+ I ++I + + +S + E ++ TI L N+ + + + + E
Sbjct: 522 QVKNIQEQINIVRKDLADILSTVMEEAQKAALTIKQLDNVRSRMSDVVLGSKRISESAGG 581
Query: 674 TQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQI 733
+ + A ++ +A +AEE++ + E ++A QQ+++ EL A + + + ++ I
Sbjct: 582 IERSIADARAGMQQIATAAEESSHATGEAATAARQQSSSTSELASAIENIAAVADELQSI 641
Score = 121 bits (300), Expect = 3e-26
Identities = 89/317 (28%), Positives = 157/317 (49%), Gaps = 33/317 (10%)
Query: 440 ANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEES 499
A+DL ++A LA+ +A +V A ++ + + ++ M +A +EES
Sbjct: 31 ADDLRRQARTLARKQ----QAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEES 86
Query: 500 VRAMEEFSGAVTEVVSIANE----GSQKGDEALKRIEDIQHMMSRIEETVSKV------- 548
A ++ AV+++ + NE +Q K +DI + ++I E VS V
Sbjct: 87 SSATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQ 146
Query: 549 ----------AEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIR 598
+E + I + + IA+QTNLLALNAAIEA RAG+ G+GFAVVA +R
Sbjct: 147 NDSVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVR 206
Query: 599 KLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQ 658
LAE++++ A NI+S+I +I E GV + +E+ + TL++
Sbjct: 207 TLAEKAEKNAANIESLI----KDISNGAEMVSNGVKSSSQKAESEVQKGHVVNKQLTLIR 262
Query: 659 ETSERMTTVKEQIVRTQEEVDK----ALRALENLAASAEETTASAEEVSSAIEQQTAAIE 714
+ E +++ +E+ AL+ E+++ +A+E +A+ EE +++QQ A++
Sbjct: 263 NEMVDLVKDSEVLLKAADEMSSAAVIALKGSESVSQAAQEQSAACEESLKSLDQQQIALD 322
Query: 715 ELRRAAQELKDMVGRMR 731
AAQ L ++ +R
Sbjct: 323 GAVTAAQSLDELTDELR 339
>gi|10954753 similar to mcpC gene in Rhizobium leguminosarum [Agrobacterium
rhizogenes] >gi|10567417|dbj|BAB16226.1| (AP002086)
similar to mcpC gene in Rhizobium leguminosarum
[Agrobacterium rhizogenes]
Length = 618
Score = 127 bits (315), Expect = 5e-28
Identities = 99/397 (24%), Positives = 177/397 (43%), Gaps = 59/397 (14%)
Query: 342 YAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEG 401
+ A A+A RL+Q E ++Q R L ++ ++ ++ + + + L+ L+ G
Sbjct: 232 FRANAVANIRLEQ--EAVEQ-RNLTEEDRRIKAESDRLRAEAMAQATQGLGEGLKHLSTG 288
Query: 402 DLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAI 461
DL+ L+ E + D F ++G L E + ANA+ S++V+ +
Sbjct: 289 DLTYRLSQPFAAEFETLRAD-------FNGAVGQLAETLRAVADAANAIDSGSREVSGSA 341
Query: 462 NQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGS 521
+ +++ +Q + + +++IT + S RA E A S A+ G
Sbjct: 342 DDLSKRTEQQAASLEETAAALDQIT------VNVANSSKRADEARMIAAQANTSAAHSGQ 395
Query: 522 QKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAA 581
+++ + + K+ + S+ + I VI IA QTNLLALNA +EAA
Sbjct: 396 ---------------VVASAVDAMEKIEQSSKQVSNIIGVIDEIAFQTNLLALNAGVEAA 440
Query: 582 RAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSE 641
RAG+AG+GFAVVAQE+R+LA+ S +AA IK +I + E++ V+
Sbjct: 441 RAGDAGKGFAVVAQEVRELAQRSAKAAREIKELIRNSSVEVQSGVK-------------- 486
Query: 642 TLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEE 701
L+ ET + T++ IV +D + + E + +
Sbjct: 487 --------------LVSETGTALKTIEGYIVTVNHHMDSIATSAREQSVGLAEVNTAVNQ 532
Query: 702 VSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFK 738
+ +Q A +EE A+ L GR+R ++ +F+
Sbjct: 533 MDQVTQQNAAMVEESNAASATLAGEAGRLRDLISQFQ 569
>gb|AAG34153.1|AF312875_1 (AF312875) methyl-accepting chemotaxis protein McpT [Sinorhizobium
meliloti]
Length = 652
Score = 127 bits (315), Expect = 5e-28
Identities = 106/437 (24%), Positives = 206/437 (46%), Gaps = 44/437 (10%)
Query: 306 MIVIQGFAVGFVIIVAILVVIYKIASNTLA-PLEKLKYAAQALAEGRLKQVSEYLKQIRY 364
+IV+ A+G ++A + + IA+N L+ P+ L + LA G L + +
Sbjct: 171 LIVLATAALG---MLAGIGAAFYIATNHLSRPILDLTGKMKLLAGGDLSVDVPFAGR--- 224
Query: 365 LERDEIGALIQAFEAVSKD--LVGTLNA---------------ISKKLERLAEGDLSNGL 407
+DEIG + A E ++ V LNA I+ + A GD + +
Sbjct: 225 --KDEIGDMAAAVEVFKQNSLAVRELNAQEEILREKSADLQSSIATVVAAAAAGDFTRRI 282
Query: 408 TVEVRGE--------LRDIIEDIRSVTETFRESIGSLV--EMANDLEKR-ANALAQVSKD 456
+ + + + +++ + + R I SL ++ ++ + A A++ +
Sbjct: 283 SKDYDNDDLNRFAASVNELVNSVDTGIAETRRVIASLATGDLTQSMKGQFQGAFAELQTN 342
Query: 457 VTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSI 516
V + + + + +++V + E+ +++ +E+ A+EE S A+ E+ +
Sbjct: 343 VNDTLQTLQKTLREVRMTTDSINGNSTELRSAADDLSKRTEQQAAALEETSAALDEITAA 402
Query: 517 ANEGSQKGDEALKRIEDIQHMMSRIEETV-------SKVAEMSRNIEEITNVITSIAEQT 569
+++ EA + + + + V ++ + S I +ITNVI IA QT
Sbjct: 403 VRNSTERAQEATVMVTEAKDSAAESASVVRNAIDAMGRIEQASSEIGQITNVIDEIAFQT 462
Query: 570 NLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEAT 629
NLLALNA +EAARAG+AG+GFAVVAQE+R+LA+ + AA +IKS+I K E+ V+
Sbjct: 463 NLLALNAGVEAARAGDAGKGFAVVAQEVRELAQRAASAAKDIKSLISKSGGEVATGVKLV 522
Query: 630 KEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLA 689
+ + +G+ + ++ +IAT +E S + V + + + + +E
Sbjct: 523 QATGAALGQIETRVLKINDHIHSIATAAREQSTGLGEVSTAVNQMDQVTQRNAAMVEEAN 582
Query: 690 ASAEETTASAEEVSSAI 706
A+ + +A A+ +++ I
Sbjct: 583 AATHKLSAEADNLANLI 599
>pir||JC4736 methyl-accepting chemotaxis protein B - Rhodobacter capsulatus
>gi|1066851|gb|AAB05215.1| (L48927) putative
[Rhodobacter capsulatus]
Length = 764
Score = 126 bits (314), Expect = 7e-28
Identities = 103/398 (25%), Positives = 178/398 (43%), Gaps = 56/398 (14%)
Query: 335 APLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGA-LIQAFEAVSKDLVGTLNAISK 393
A +++ A AEG ++ +++R ++ I A L + + L A+
Sbjct: 394 AAAQEIAAVVAACAEG------DFSRRLRTDDKTGIFADLCAGMNRIGEAADDGLTAVRV 447
Query: 394 KLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQV 453
LERLAE DL++ + G +I E + TE+ ++G + A ++ A +A
Sbjct: 448 ALERLAERDLTHRMPTRFHGVFGEIAETMNRTTESLTGTLGDISVSATAVDTSAREIAGA 507
Query: 454 SKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEV 513
D+ + ++Q + ++ T+ + AQT+ AVTE+
Sbjct: 508 GDDLARRSERNAAMLEQTASALEQMSATVRSAANS----AQTARS----------AVTEI 553
Query: 514 VSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLA 573
+ A G Q ++SR + ++ S I I VI IA QTNLLA
Sbjct: 554 STRAGAGHQ--------------VVSRAVSAMDEIKASSEAIGRILQVIDDIAFQTNLLA 599
Query: 574 LNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGV 633
LNA +EAARAG+A RGFAVVA E+R LA+ S +AA I +I+ ++ + +GV
Sbjct: 600 LNAGVEAARAGDAVRGFAVVASEVRALAQRSSEAAREIARLIETASNNV-------NQGV 652
Query: 634 SVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAE 693
++ +S + LR+ + + ++A + E IV +E + + N +
Sbjct: 653 GLVHDSGQALREIVAGVEDVAQKIAE-----------IVTASQETATGITEISNATTELD 701
Query: 694 ETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMR 731
TT ++ ++ E+ AA+ L+ A L + V R
Sbjct: 702 RTT---QQNAAVFEETNAAVRSLQGEATALAEAVATFR 736
>sp|P42257|PILJ_PSEAE PILJ PROTEIN >gi|540959|pir||S40037 pilJ protein - Pseudomonas
aeruginosa >gi|11352735|pir||C83594 twitching motility
protein PilJ PA0411 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|401797|gb|AAA25952.1| (L22036)
methyl-accepting chemotaxis protein (MCP) homologue
[Pseudomonas aeruginosa]
>gi|9946266|gb|AAG03800.1|AE004478_5 (AE004478)
twitching motility protein PilJ [Pseudomonas aeruginosa]
Length = 682
Score = 126 bits (314), Expect = 7e-28
Identities = 99/351 (28%), Positives = 170/351 (48%), Gaps = 47/351 (13%)
Query: 398 LAEGDLSNGLTVEVRGELRDIIEDIR-SVTETFRESIGSLVEMANDLEKRANALAQVSKD 456
LA+GDL+ TV ED ++ ++ SI L E+ + + A +A +++
Sbjct: 363 LADGDLTVAATVT---------EDFTGAIADSINYSIDQLRELVETINQTAVQVAAAAQE 413
Query: 457 VTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSI 516
+ EA + + E INE+ + V+ + ES S V+I
Sbjct: 414 TQSTAMHLAEASEHQAQEIAGASAAINEMAVSIDQVSANASES-------SAVAERSVAI 466
Query: 517 ANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNA 576
AN+G++ + +++I+ + + + ++ E S+ I +I ++I IA+QTN+LALNA
Sbjct: 467 ANKGNEVVHNTITGMDNIREQIQDTSKRIKRLGESSQEIGDIVSLINDIADQTNILALNA 526
Query: 577 AIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVI 636
AI+A+ AG+AGRGFAVVA E+++LAE S A I++++ I + EAV +S+
Sbjct: 527 AIQASMAGDAGRGFAVVADEVQRLAERSSAATKQIEALVKTIQTDTNEAV------ISME 580
Query: 637 GESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRAL-ENLAASAEET 695
+SE +R A L Q+ + + E+V K L AL +N++ +A +
Sbjct: 581 QTTSEVVRG--------ARLAQDAGVALEEI--------EKVSKTLAALIQNISNAARQQ 624
Query: 696 TASAEEVSSAI-------EQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+SA +S+ + Q +A R+ L M MR V FK+
Sbjct: 625 ASSAGHISNTMNVIQEITSQTSAGTTATARSIGNLAKMASEMRNSVSGFKL 675
>gb|AAG34156.1|AF312878_1 (AF312878) methyl-accepting chemotaxis protein McpW [Sinorhizobium
meliloti]
Length = 689
Score = 125 bits (311), Expect = 2e-27
Identities = 100/377 (26%), Positives = 166/377 (43%), Gaps = 53/377 (14%)
Query: 359 LKQIRYLERDEIGALIQAFEAVSKDLVGTLN----AISKKLERLAEGDLSNGLTVEVRGE 414
LK+ R E + E + +G +N A+ L +LA+G+L+ + G
Sbjct: 272 LKERARASRQETETERERHETEREQAIGLINTAVEALGGALNQLADGNLAVAIREPFDGG 331
Query: 415 LRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIE 474
L + D E + + S+ E +E + + D+ + +++Q S
Sbjct: 332 LDALRRDFNDTVERLSQVLSSVKENTASIESNGRQMRSAADDLARRTEKQAASLEQTSA- 390
Query: 475 AQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDI 534
A+EE + V A E S DE E+
Sbjct: 391 ---------------------------ALEEITVTVKTATERAEEASHMVDETRINAEES 423
Query: 535 QHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVA 594
++ ++++ S I +I +VI IA QTNLLALNA +EAARAGEAG+GFAVVA
Sbjct: 424 GRIVGEAIAAMARIEGASSEIGKIIDVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVA 483
Query: 595 QEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIA 654
QE+R+LA+ + AA +IK+++ + +E+K V +E +G IG A +A
Sbjct: 484 QEVRELAQRAAGAAKDIKALVSRSGNEVKTGVRLVQETGDALGR--------IG--AKVA 533
Query: 655 TLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIE 714
+ + S IV E LR + A ++ T ++ ++ +EQ AA
Sbjct: 534 CINEHMS--------SIVMAAREQSTGLREINTAVAQLDQMT---QQNAAMVEQTNAASH 582
Query: 715 ELRRAAQELKDMVGRMR 731
L + A++L ++VG+ R
Sbjct: 583 TLAQDAEKLSEIVGQFR 599
>pir||B82486 hemolysin secretion protein HylB VCA0220 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657614|gb|AAF96132.1| (AE004362) hemolysin
secretion protein HylB [Vibrio cholerae]
Length = 548
Score = 125 bits (311), Expect = 2e-27
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 28/337 (8%)
Query: 403 LSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAIN 462
L L ++ EL DI + + + SI + E + +L A++++Q +
Sbjct: 240 LRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCA 299
Query: 463 QVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQ 522
+ QV+ T++EI + A ++++ + EG +
Sbjct: 300 SQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLH--------------SGEGKK 345
Query: 523 KGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAAR 582
E RI+ + + + + VS +A I + I SI+EQTNLLALNAAIEAAR
Sbjct: 346 VVGEVQNRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAAR 405
Query: 583 AGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSET 642
AGE GRGFAVVA E+R LA S + + I+ +I+++ E AVEA ++G S S+
Sbjct: 406 AGEQGRGFAVVADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRS----QSDV 461
Query: 643 LRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEV 702
+ + ++ +T + QI + ++ + A E + E+ + E++
Sbjct: 462 ----------VVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDI 511
Query: 703 SSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+ + + +EL RA+ L+ + ++ ++VG F++
Sbjct: 512 NQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL 548
>pir||H82147 methyl-accepting chemotaxis protein VC1868 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656398|gb|AAF95016.1| (AE004262) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 626
Score = 125 bits (310), Expect = 2e-27
Identities = 104/417 (24%), Positives = 191/417 (44%), Gaps = 60/417 (14%)
Query: 331 SNTLAPLEKLKYAAQALAEGRLKQVSEYLKQI--RYLERDE-----------IGALIQA- 376
S + +EK +++A A+G ++ ++ L+++ RY E + +I A
Sbjct: 225 SQQVKDIEKNLLSSEATAQGVIESTAQRLEEVSSRYQSLAEKAGEQTLLSILVACVILAV 284
Query: 377 -----FEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRE 431
F VS L L I + LE+L+ GDLS L + +D + E
Sbjct: 285 LTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALI--SNKKDEFNQLAFAVNKSCE 342
Query: 432 SIGSLVEMAND----LEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITD 487
++G LV + D L A AL Q ++ + V + Q+++ + T +++
Sbjct: 343 NLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQQVSH 402
Query: 488 GMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSK 547
+ +VA S+ S A A EGS+ A+ + ++ ++ + +
Sbjct: 403 SLEVVANVSKASTLA--------------AAEGSKVISAAIGSLREVGSILQSAASHIQQ 448
Query: 548 VAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQA 607
+ + S ++ + ++I IAEQTNLLALNAAIEAARAGE GRGFAVVA E+R LA + A
Sbjct: 449 LEQASAKVDSVMDIINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVRTVNA 508
Query: 608 ADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTV 667
I I+ + E + E + + +S +T ++E +
Sbjct: 509 VSEISGTIETMKKE-------SAEVILFMNQSEQT--------------MEEGQSKGNQA 547
Query: 668 KEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELK 724
+ + R + D+A E + +S +E +A+++ ++ ++ Q ++A++ L +L+
Sbjct: 548 MQALQRITQGTDEAASQTERIFSSIKELSATSQAMAESMSQISSAMQALESYNTQLR 604
>gb|AAC18612.1| (AF016689) Mcp-2 [Treponema pallidum]
Length = 427
Score = 124 bits (309), Expect = 3e-27
Identities = 110/429 (25%), Positives = 192/429 (44%), Gaps = 51/429 (11%)
Query: 355 VSEYLKQIRYLERD--EIGALIQAFE-----AVSKDLVGTLNAISKKLERLA--EGDLSN 405
VSE++ + L+ +G ++ F AV++ +V L + + LE +A EGDL+
Sbjct: 6 VSEFMGPVYTLQNYLLAVGIIVVLFSLIVVYAVARKIVRPLRSTVRVLEDIAYGEGDLTV 65
Query: 406 GLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVN 465
L V E+ + + E R +I ++ ++D+ + + LA + A+N++
Sbjct: 66 RLPVVGGDEVSLLCQYFNQTMEKIRFAIATVGSSSDDMRRIGDELASNMTETASAVNEIT 125
Query: 466 EAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGD 525
I V Q ++E TD + + +T + ++E T+ V++A + S +
Sbjct: 126 ANIDGVKHRVDLQVSGVSEATDTVERIIKTIKGLNSSIE------TQAVNVA-QSSSSVE 178
Query: 526 EALKRIEDIQHMMSRIEETV---------------------SKVAEMSRNIEEITNVITS 564
+ + I I + R +E V K++E S ++ E ++VI
Sbjct: 179 QMVANIVSITQTLERSDEAVHSLAIATADGRDTLVSSSGITQKISEESGSLLEASSVIQH 238
Query: 565 IAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEI-- 622
IA QTNLLA+NAAIEAA AGEAG+GFAVVA EIRKLAEES I + ++ EI
Sbjct: 239 IASQTNLLAMNAAIEAAHAGEAGKGFAVVADEIRKLAEESSTQGKTITETLKTLSVEIDT 298
Query: 623 ----KEAVEATKEGVSVIGES--------SETLRDTIGYLANIATLLQETSERMTTVKEQ 670
+AVE + + + + +E +++ + ++ + VKE
Sbjct: 299 LSTSSKAVEEQFDTIFRLSDQVRTMSRSLTEAMKEQSDGSREVLAAIKSINAATVDVKEG 358
Query: 671 IVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRM 730
+ + R ++ L E S E+++ + A+ E+ Q K + +
Sbjct: 359 SADMLKGGEVIAREMQRLDDLTSEIARSMNEMAAGAIEINNAVHEVNEITQRSKQSISSL 418
Query: 731 RQIVGKFKV 739
V KFKV
Sbjct: 419 ADEVEKFKV 427
>pir||C70174 methyl-accepting chemotaxis protein (mcp-2) homolog - Lyme disease
spirochete >gi|2688522|gb|AAC66955.1| (AE001161)
methyl-accepting chemotaxis protein (mcp-2) [Borrelia
burgdorferi]
Length = 715
Score = 124 bits (308), Expect = 4e-27
Identities = 128/540 (23%), Positives = 246/540 (44%), Gaps = 79/540 (14%)
Query: 212 IAIIDQNGMTLVHPNEEFINKLNIF--QVPELKDLADELKKGKDEGYVLYTFQGIKKIGG 269
+ II+ +G +E N +IF L ++ + L +GK Y +I
Sbjct: 221 VYIINSSGDAFGGKDEILKNIKHIFGFNPKTLTEILNTLSQGKAN----YNTSNSNEIIS 276
Query: 270 YKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKI 329
R+ T+ W + + ++I M+++ + + ++I+ IL++I I
Sbjct: 277 LARITTSNWYLGIKIDYNNIFSK-------EFKNMRLVSLS--IIFILVIIFILIMISTI 327
Query: 330 ASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLN 389
+ ++ ++KL + G L +I +D I + I F ++L +N
Sbjct: 328 KTLIISKIDKLNVVIPKVKNGDLTF------KIESKGKDSISSTINLFGHFIENLKNVIN 381
Query: 390 AISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANA 449
++ ++++ L E + L E+ + + I++ E +E + VE + N
Sbjct: 382 SLQERVKLLKEN--GDHLFSEIN-KTHNTIKNSNQYIEKTQEEVEKQVEF---ISNTTNI 435
Query: 450 LAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGA 509
+ +SK+++ N SIE Q A + E+S A+EE G
Sbjct: 436 IESLSKNISSLDN---------SIETQ----------------AASVEQSSSAIEEMIGG 470
Query: 510 VTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRN---IEEITNVITSIA 566
+ + I + + K E LKR D + EE ++++ E+ +N ++E ++I+SIA
Sbjct: 471 IQSITEITQKAA-KSTEELKRFSDDGR--KKQEEVITQIKEIFKNSTRLQEANSLISSIA 527
Query: 567 EQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAV 626
QTNLL++NAAIEA+ AGEAG+GFA+VA+EI+ LAE+ ++++ S I++I D I + V
Sbjct: 528 SQTNLLSMNAAIEASHAGEAGKGFAIVAEEIKDLAEQVTSQSESVASSINEIMDSITKTV 587
Query: 627 ---EATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALR 683
E T + + I +S I ++Q E T++EQ + +Q E+ KAL
Sbjct: 588 NTSELTNKAFNQIFDS-------------INLVVQVIEEINHTMQEQSIGSQ-EILKALN 633
Query: 684 ALENLA----ASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+ + + + +E+ S I+ + + + LK+ + + + + + KV
Sbjct: 634 TMREITYEVKIGSNDMFRGNKEIISTIKLLGEINITVSNSMKGLKEEINTLVEAIERIKV 693
>sp|P15492|HLYB_VIBCH HEMOLYSIN SECRETION PROTEIN PRECURSOR >gi|79266|pir||S15910
hemolysin-releasing protein - Vibrio cholerae
>gi|2190531|emb|CAA68638.1| (Y00557) methyl accepting
chemotaxis protein [Vibrio cholerae]
Length = 548
Score = 124 bits (308), Expect = 4e-27
Identities = 87/337 (25%), Positives = 156/337 (45%), Gaps = 28/337 (8%)
Query: 403 LSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAIN 462
L L ++ EL DI + + + SI + E + +L A++++Q +
Sbjct: 240 LRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCA 299
Query: 463 QVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQ 522
+ QV+ T++EI + + E+ + EG +
Sbjct: 300 SQRDRTVQVATAIHELGATVSEIASNAAMARDVANEATLH--------------SGEGKK 345
Query: 523 KGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAAR 582
E RI+ + + + + VS +A I + I SI+EQTNLLALNAAIEAAR
Sbjct: 346 VVGEVQNRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAAR 405
Query: 583 AGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSET 642
AGE GRGFAVVA E+R LA S + + I+ +I+++ E AVEA ++G S S+
Sbjct: 406 AGEQGRGFAVVADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRS----QSDV 461
Query: 643 LRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEV 702
+ + ++ +T + QI + ++ + A E + E+ + E++
Sbjct: 462 ----------VVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDI 511
Query: 703 SSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+ + + +EL RA+ L+ + ++ ++VG F++
Sbjct: 512 NQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL 548
>sp|P43500|FRZC_MYXXA FRZCD PROTEIN (FRIZZY AGGREGATION PROTEIN FRZCD)
>gi|94523|pir||C32185 Frz CD protein - Myxococcus
xanthus >gi|150089|gb|AAA25395.1| (J04157) FrzCD protein
[Myxococcus xanthus]
Length = 417
Score = 123 bits (307), Expect = 5e-27
Identities = 93/350 (26%), Positives = 164/350 (46%), Gaps = 30/350 (8%)
Query: 390 AISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANA 449
A+ + + EGDLS T +L ++E V ET R + + E A L AN
Sbjct: 95 ALDALIGLVREGDLSRWNTTTEDPQLGPLLEGFGKVIETLRTFVREINEAALRLSSSANQ 154
Query: 450 LAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGA 509
+ S + + AI + + + + +I + VA+ +EE++ A GA
Sbjct: 155 VLAASTQHETSSTEQAAAIHETTATMEELKHASAQIAENAGSVARVAEETLGAARAGRGA 214
Query: 510 VTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQT 569
+ E + + ++ I+ + ++++K+++ I + VI IA+++
Sbjct: 215 IGEFI--------------QAMQQIRSDGVAVADSIAKLSKRVERIGTVVEVIDEIADRS 260
Query: 570 NLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEAT 629
+LLALNAA+E +RAGEAG+GF++VA E+R+LAE + IK++I +I + A A
Sbjct: 261 DLLALNAALEGSRAGEAGKGFSIVAAEMRRLAENVLDSTKEIKNLITEIREATAAAAGAA 320
Query: 630 KEGVSVIGESSETLRDTIGY-LANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENL 688
+ S ES E L + I +QETS+ + + TQ++
Sbjct: 321 EASKSAT-ESGEKLGAVAAQAVEGILAGVQETSDAARVIN---LATQQQ----------- 365
Query: 689 AASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFK 738
+ E+ AS E+ Q T A ++ AA EL + GR+ +++ +FK
Sbjct: 366 RTATEQVVASMAEIEDVTRQTTQASKQATGAAAELTQLAGRLAELIKRFK 415
>pir||T03481 methyl-accepting chemotaxis protein - Rhodobacter capsulatus
>gi|3128282|gb|AAC16134.1| (AF010496) chemoreceptor
[Rhodobacter capsulatus]
Length = 638
Score = 123 bits (305), Expect = 8e-27
Identities = 137/593 (23%), Positives = 240/593 (40%), Gaps = 104/593 (17%)
Query: 204 IKLGKTGYIAIIDQNGMTLVHP-NEEFINKLNI-FQVPELKDLADE---LKKGKDEGYVL 258
++ +GY +ID + HP +++ I P+ + E L + + G +
Sbjct: 83 LRFDDSGYFFVIDHSATVQAHPVKPDWVGTSKIDLTDPQGTKIYQEMIALAESEGAGSIR 142
Query: 259 YTFQGI------KKIGGYKRLKTTGWIVVATVPLSDITGPILSATDTAINKMKMI--VIQ 310
Y FQ +KIG + GWIV +SDI ++ + M ++ V+
Sbjct: 143 YMFQKPDTDTPEEKIGFVRDFTPWGWIVGTGSYVSDIAAALVHLRQVSFISMGLVALVLV 202
Query: 311 GFAVGFVIIV-----------------------------------AILVVIYKIASNTLA 335
A G V A + +++I+ + A
Sbjct: 203 AAATGLARSVTKPLAQVHGRMERMTAGDAESAVPCTDLRSEVGDMAKAIEVFRISLHEKA 262
Query: 336 PLEKLKYA-----AQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNA 390
+E+ + A A+A +E R ++ + L++ LER+ + +A ++
Sbjct: 263 QMEEQRKAQEAALARAQSEAREREEAMRLREAE-LERERLQE--EARRLTEREEQRRREE 319
Query: 391 ISKKLERLAE----GDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKR 446
+++ + + G L+ GL G+L +T++F ES +L N
Sbjct: 320 AAREAQMAEQNHVVGTLAAGLRAMSAGDLTG------RITQSFPESYENLRHDFNA---- 369
Query: 447 ANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEF 506
ALA++S + + A V +E + +E+ + A + EE+ AM E
Sbjct: 370 --ALAKMSGLIASIVR----ATDVVELETRHLSSASSELGRRTEMQAASLEETAAAMNEM 423
Query: 507 SGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIA 566
+ +V V+ A +Q + ++ + + + +A S I IT+VI IA
Sbjct: 424 ASSVENSVAGARTAAQAVSRTRTTTATGRDVVRQTAQAMDDIARSSEQISRITSVIDDIA 483
Query: 567 EQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAV 626
QTNLLALNA +EAARAGE+GRGFAVVA E+R LA+ S +AA I ++ID + ++ V
Sbjct: 484 FQTNLLALNAGVEAARAGESGRGFAVVASEVRALAQRSSEAAREIATLIDTSSRQVASGV 543
Query: 627 EATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALE 686
E + + + + + G L +IA E S
Sbjct: 544 ELASRSDTALEQIETLVTELDGLLVSIANAATEQS------------------------- 578
Query: 687 NLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
A E TA+ ++ + A EE A Q L + ++++ G F+V
Sbjct: 579 ---AGISEVTAAVNQLDQVTQHNAAMFEENSAATQGLLNEARSLKELSGVFRV 628
>gb|AAG31044.1|AF264948_6 (AF264948) methyl-accepting chemotaxis protein [Erwinia amylovora]
Length = 507
Score = 123 bits (305), Expect = 8e-27
Identities = 109/420 (25%), Positives = 188/420 (43%), Gaps = 69/420 (16%)
Query: 330 ASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGA----LIQA------FEA 379
A T L LK A+AE ++ V++ K R L + A LI +
Sbjct: 142 ADKTFGALSTLKKHQDAVAENKV--VAQKRKDFRTLIISLLAAGAVTLISVALGTLILRS 199
Query: 380 VSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEM 439
+ + L G A ++++ +A GDL+ + VE + S+ ++ SL +
Sbjct: 200 LLRQLGGEPLAAAQEVRLMAGGDLTFPILVEQHDRV--------SLLAQLKDMQSSLSAL 251
Query: 440 ANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEES 499
++ A +LA S +++ +++ ++ + Q+ T+ ++ V+ +E +
Sbjct: 252 VTNVRSNAESLATASTQISQGNQDLSQRTEEQASSLQQTSATMEQLGS---TVSNNAENA 308
Query: 500 VRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEIT 559
+A + SGA T +A EG + M+ R+ T+ + + S+ I EI
Sbjct: 309 HQASQLASGAST----LAAEG--------------ELMVGRVISTMRVINDSSKKISEII 350
Query: 560 NVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKIT 619
NVI IA QTN+LALNAA+EAARAGE GRGFAVVA E+R LA+ S AA I ++I
Sbjct: 351 NVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSANAAKEISTLI---- 406
Query: 620 DEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVD 679
+++G + L+ ET MT + E I + + V
Sbjct: 407 ------------------------TNSVGQVEQGCLLVDETGVTMTRIMEAIKQVKYIVS 442
Query: 680 KALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+ A ++ ++ + ++ +Q A +EE A + LK+ ++ Q V F+V
Sbjct: 443 EISAASLEQSSGVKQVGQAITQIDMVTQQNAALVEESAAATENLKEQAEQLVQAVAVFQV 502
>pir||E82395 methyl-accepting chemotaxis protein VCA0974 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658413|gb|AAF96870.1| (AE004423) methyl-accepting
chemotaxis protein [Vibrio cholerae]
Length = 561
Score = 122 bits (304), Expect = 1e-26
Identities = 81/360 (22%), Positives = 167/360 (45%), Gaps = 28/360 (7%)
Query: 380 VSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEM 439
+S +V +N++ + +LA+GDLS + E+ + +D+ + ++ L +
Sbjct: 230 LSGQIVAPINSLQSVMRKLAQGDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRI 289
Query: 440 ANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEES 499
+ ++ + LA V I+QV+ T + ++D A +++ +
Sbjct: 290 SEEVASASTELAAVMTQAESNAQMELMEIEQVASAVNELASTADNVSDN----ASSADAT 345
Query: 500 VRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEIT 559
R +E + + ++I E SQ ++ + D ++ R++E S I +
Sbjct: 346 AREADELAKSG---LAIFKESSQASEQMALALNDAARVVLRLKE-------QSEQISNVI 395
Query: 560 NVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKIT 619
VI +++QTNLLALNAAIEAARAGE+GRGFAVVA E+R LA ++ + I++II+++
Sbjct: 396 EVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQASTKEIQAIIEELQ 455
Query: 620 DEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVD 679
+ A +++++ ++ L L + ++ + + E + +
Sbjct: 456 TQSTMA--------------NDSMQTSLDMLTQNKALTAKANDALIGITESVSDINDSNA 501
Query: 680 KALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFKV 739
+ A E + ++ + +S+ + Q I + A+ EL + + + + FK+
Sbjct: 502 QVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLAEKQKAQLSFFKL 561
>sp|P55652|Y4SI_RHISN PROBABLE CHEMORECEPTOR Y4SI (METHYL-ACCEPTING CHEMOTAXIS PROTEIN)
>gi|2182623|gb|AAB91848.1| (AE000096) Y4sI [Rhizobium
sp. NGR234]
Length = 756
Score = 121 bits (301), Expect = 2e-26
Identities = 123/459 (26%), Positives = 202/459 (43%), Gaps = 65/459 (14%)
Query: 278 WIVVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKI-ASNTLA- 335
W ++A P +D+ +SA+ + K+ +G AIL + I AS +++
Sbjct: 311 WSIIALEPEADV----VSASTAMLIKI---------IGITAATAILALAMAILASRSISG 357
Query: 336 PLEKLKYAAQALAEG----------RLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLV 385
PL L + LA G R ++ E + + + I + +A S +
Sbjct: 358 PLAGLVSIMKRLANGDINVRVAGVDRRDEMGEMSRAVLVFRDNAIARVAAEDDARSAEEA 417
Query: 386 GTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDI--RSVTETFRESIGSLVEMANDL 443
+ ++ER D + ++ G L + + + R +T F E L
Sbjct: 418 MEHDRRMMEMERSERLDEQARVMAQIGGGLAALSDGVFSRPITVDFPEEYRPL------- 470
Query: 444 EKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAM 503
D A+ Q+ E I+ V+ +A ++EI+ ++A+ +E +
Sbjct: 471 ----------KSDFNRALGQLRETIRTVAAQAASMSSIVSEISCATDVLAKRTEHQAIVL 520
Query: 504 EEFSGAVTEVVSIANEGSQKGDEALKR---IEDIQHMMSRIEETVS-------KVAEMSR 553
+ GAV + +I+N+ S + A + D + +E VS ++ E S
Sbjct: 521 D---GAVNTMDAISNDVSVTANAANNADALVRDAHSAAAASDEIVSSAIAGMLEIEESSA 577
Query: 554 NIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKS 613
I I +VI IA QTNLLALNA +EA+RAGEAG+GFAVVA E+R LA+ S AA IK
Sbjct: 578 KIATIVSVIEEIAHQTNLLALNAGVEASRAGEAGKGFAVVASEVRALAQRSSDAAKEIKD 637
Query: 614 IIDKITDEI---KEAVEATKEGVSVIGESSETLRDTIGYLANIAT-LLQETSERMTTVKE 669
+I+ T + KE V++ E + I + +R T+ +A AT + SE TT+ E
Sbjct: 638 LINVSTQRVERGKELVDSASELLKHIAARVDLIRTTVSNIAATATSQAKHLSEFQTTIAE 697
Query: 670 QIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQ 708
TQ+ A E A+ A A+ + I+Q
Sbjct: 698 IDQSTQQTAAMA----EESDAACRSLNAEAQHLLELIQQ 732
>gb|AAA82705.1| (U39068) AcfB [Vibrio cholerae]
Length = 480
Score = 119 bits (296), Expect = 9e-26
Identities = 84/362 (23%), Positives = 178/362 (48%), Gaps = 35/362 (9%)
Query: 384 LVGTLNAISKKLERLAEG--DLSNG---LTVEVRGELRDIIEDIRSVTETFRESIGSLVE 438
L+ T+ + K L +L + ++S+G LTV + ++ + +F +G+L
Sbjct: 144 LLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTD---QEFSKIINSFNIFVGNLQS 200
Query: 439 MANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEE 498
+ ++++ + + ++ + E + N ++ E ++NE+ +AQ + E
Sbjct: 201 IVSEVKMNSEKINCITTETQELVEVCNNSVMDQYRELDMLASSMNEMVATSNQIAQITSE 260
Query: 499 SVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSR---NI 555
+ + +G V E V + + E + +++ ++++T S + +++R NI
Sbjct: 261 ASEITSKINGQVNEGVGAVSSVT----------ESVGNLVEKLDKTKSVIQDLNRQTQNI 310
Query: 556 EEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSII 615
+ I I IA+QTNLLALNAAIEAARAGE GRGFAVVA E+R LA +++++ NI SII
Sbjct: 311 DVILKAINDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSII 370
Query: 616 DKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQ 675
+ + +V E ++ +SET+ T+ ++ + + + + +++
Sbjct: 371 HILQENSLLSVHVMDESFNI---ASETM-----------TISADSKQCLDNISQSVIQIV 416
Query: 676 EEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVG 735
+ ++ A + +EE +++ + + ++ ++ + A K ++G ++
Sbjct: 417 DITNQVATAAYEQSHVSEEINSNSISIKDKADTLSSLGNKISQQAYSQKALIGHQDDLIS 476
Query: 736 KF 737
KF
Sbjct: 477 KF 478
>dbj|BAB04224.1| (AP001508) methyl-accepting chemotaxis protein [Bacillus
halodurans]
Length = 439
Score = 119 bits (296), Expect = 9e-26
Identities = 106/398 (26%), Positives = 189/398 (46%), Gaps = 37/398 (9%)
Query: 333 TLAPLEKLKYAAQALAEGRLKQV-----SEYLKQIRYLERDEIGALIQAF-EAVSKDLVG 386
TL L+++K A Q L E ++ + S +KQ E E + ++ E + + ++
Sbjct: 46 TLDDLKRMK-ALQPLVEENMEVLADAFYSNIIKQPNLNEIIETHSSVERLKETLKQHILE 104
Query: 387 TLN-----AISKKLERLAEGDLSNGLTVE-VRGELRDIIEDIRSVTETFRESIGSLVEMA 440
N A +K ++A+ + GL + + + + + + E +S +V
Sbjct: 105 MFNGEIDQAFLQKRLQIAQAHVRIGLQTKWYVSAFQQLTDSLIQLLEQHLQSPSDIVLAT 164
Query: 441 NDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQ-ETINEITDGMRLVAQTSEES 499
L K N Q+ V EA N+ I+ E +RQ+ E I +T + +A S+++
Sbjct: 165 RSLLKLLNLEQQL---VLEAYENENKRIEA---EHERQKRELIQHLTAAAQELAAISQQT 218
Query: 500 VRAMEEFSGAVTEVVSIANEGSQKGDEA--------------LKRIEDIQHMMSRIEETV 545
A ++ VV+ ANEG+ +A ++ I + I+
Sbjct: 219 SAANKQLVHRSETVVASANEGTDLAIKAETLSLNGKAQITTQSSNMDAILQSVKHIQTIS 278
Query: 546 SKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESK 605
+ + + S I E +V+ IA+QTNLLALNA IEA+RAGE G+GFAVVA E+RKLA+++K
Sbjct: 279 TDLNDRSIEITEFVDVVKGIADQTNLLALNATIEASRAGEKGKGFAVVANEVRKLADQTK 338
Query: 606 QAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQET---SE 662
+ + + +I+K T++I VE+ ++ E S+ + T G +I + E +E
Sbjct: 339 ASTNTVSQLIEKTTEQIASVVESIGTIYQLVSEGSKGMDSTAGTFHSITEAMNEVKTKNE 398
Query: 663 RMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAE 700
+M T +Q++ +E+D++ + A T E
Sbjct: 399 QMKTDLQQLLSVTKELDESSLQVSQSANQLNRLTTEVE 436
>gb|AAG19428.1| (AE005036) Htr13 transducer; Htr13 [Halobacterium sp. NRC-1]
Length = 423
Score = 116 bits (289), Expect = 6e-25
Identities = 89/355 (25%), Positives = 168/355 (47%), Gaps = 11/355 (3%)
Query: 371 GALIQAFEAVSKDLVGTLNAISKKLERLAEGD-LSNGLTVE--VRGELRDIIEDIRSVTE 427
G L+ A S D A++ L GD ++G + V R + ED+ ++
Sbjct: 72 GDLLALLAATSADADAFTAAVTAIQSPLLSGDGPTDGPPAQESVTAHARVVAEDMSAL-- 129
Query: 428 TFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITD 487
R + + A E A+ A V+ ++ E ++N+ ++++ A +Q + + +
Sbjct: 130 --RGRVAADDATATGSEATADEAAAVA-ELIERAREMNQNMEEIDRLAAQQSDNTDNLKA 186
Query: 488 GMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSK 547
+ ++ E+ + E + E S+A +G ++ ++++E I ++ + +
Sbjct: 187 EISDISSAIEQIAASATEVNDRSDEAQSLATDGYERAVAVVEQVEAIHDGVTEVRHQTAT 246
Query: 548 VAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQA 607
+ + + I++I VI IA+QTNLLALNA+IEAARA G GFAVVA E++ LAEESK
Sbjct: 247 LQDHTEAIDDIVEVINDIADQTNLLALNASIEAARADAGGEGFAVVADEVKSLAEESKTQ 306
Query: 608 ADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTV 667
A+ I+ ++ I E + A + E + +S E ++ I L+ S + +
Sbjct: 307 AEEIEERVENIQVETRNAADTLVELETETEDSLEASTSSLDTFEEIKDLVTGVSTSLDEI 366
Query: 668 KEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQE 722
K R E ++ ++ A A+ ++EV+S + A +++L E
Sbjct: 367 KSGTERQTESSEELTMMIDEAARKAD---TISDEVASMADANHAQLQKLEAYQSE 418
>pir||T44258 transducer protein htrXIII [similarity] - Halobacterium salinarum
>gi|4104483|gb|AAD02051.1| (AF036230) soluble transducer
HtrXIII [Halobacterium salinarum]
Length = 423
Score = 115 bits (284), Expect = 2e-24
Identities = 88/355 (24%), Positives = 171/355 (47%), Gaps = 11/355 (3%)
Query: 371 GALIQAFEAVSKDLVGTLNAISKKLERLAEGD-LSNGLTVE--VRGELRDIIEDIRSVTE 427
G L+ A S D A++ L GD ++G + V R + ED+ ++
Sbjct: 72 GDLLALLAATSADADAFTAAVTAIQSPLLSGDGPTDGPPAQESVTAHARVVAEDMSAL-- 129
Query: 428 TFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITD 487
R + + A E A+ A V+ ++ E ++N+ ++++ A Q + + +
Sbjct: 130 --RGRVAADDATATGSEATADEAAAVA-ELIERAREMNQNMEEIDRLAAHQSDNTDNLKA 186
Query: 488 GMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSK 547
+ ++ E+ + E + E S+A +G ++ ++++E I ++ + +
Sbjct: 187 EISDISSAIEQIAASATEVNDRSDEAQSLATDGYERAVAVVEQVEAIHDGVTEVRHQTAT 246
Query: 548 VAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQA 607
+ + + I++I VI IA+QTNLLALNA+IEAARA G+GFAVVA E++ LAEESK
Sbjct: 247 LQDHTEAIDDIVEVINDIADQTNLLALNASIEAARADAGGQGFAVVADEVKSLAEESKTQ 306
Query: 608 ADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTV 667
A+ I+ ++ I E + + +++ E + +S E+ ++ I L+ S + +
Sbjct: 307 AEEIEERVENIQVETRISADSSVELETETEDSLESSTFSLDTFEEIKDLVTGVSTSLDEI 366
Query: 668 KEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQE 722
K R E ++ ++ A A+ ++EV+S + A +++L E
Sbjct: 367 KSGTERQTESSEELTMMIDEAARKAD---TISDEVASMADANHAQLQKLEAYQSE 418
>pir||A71978 methyl-accepting chemotaxis protein (MCP) - Helicobacter pylori
(strain J99) >gi|4154575|gb|AAD05650.1| (AE001446)
methyl-accepting chemotaxis protein (MCP) [Helicobacter
pylori J99]
Length = 673
Score = 113 bits (281), Expect = 5e-24
Identities = 156/713 (21%), Positives = 289/713 (39%), Gaps = 89/713 (12%)
Query: 6 KIILMAIMSAVITMAIFGGVTIYSFNKVYGVIKGEIQAPAIEQGGQLAMSAAEVAEKMFD 65
KI++M ++ A+ G + Y KV V++ Q +L A++
Sbjct: 9 KIVMMVCAVVIVISAVMGVIISY---KVESVLQS--------QATELLQKKAQLVSFKIQ 57
Query: 66 DFFARVADYGTMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVYFGDEEG 125
R+ M ++ + + ++ +LSEF VS +Y + E
Sbjct: 58 GIMKRIF----MGANTLERFLSDENGAINDTLKRRMLSEFLLANPHVLLVSAIYTNNNER 113
Query: 126 HM--------YMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVITYAVP 177
+ YP L E ++ + ++PY G + +
Sbjct: 114 MITAMNMDSKIAYPNTALNENMTNQIHSLKSITR-------SDPYYKEVNGDKIYGMDIT 166
Query: 178 VYVNGQFKGVIG-------LDVFVSTLLNETKK--IKLGKTGYIAI-----IDQNGMTLV 223
+ + G+ + VIG +D F + ++ + K +GK G I I I ++ +
Sbjct: 167 LPLMGKNQNVIGALNFFLNIDAFYTDVVGKKKSNTFLMGKDGRILINPNREIQDKILSAI 226
Query: 224 HPNEEFINKLNIFQVPELKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTG----WI 279
+P++ + + E L+ G E TF I+ ++ G W
Sbjct: 227 NPDKRVAKAVEYYNQNEAGTLSYHSLSGNTE-----TFLAIQPFDFFEEKGNNGNHWRWA 281
Query: 280 VVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIAS---NTLAP 336
+ V S + AT+T + +++ + F++ + I +I K S NTL
Sbjct: 282 IGKYVNKSLV---FKEATNTKFIIITTLILGVLVLAFLVFIIISNLITKRISRVNNTLND 338
Query: 337 LEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLE 396
L + L S Y +I ++ +++ E++ D N+I +
Sbjct: 339 FFNLLNNPKNNHAISLTPPSAY-DEIGQMQASINENILKTQESIQADNKAIQNSI-EVTN 396
Query: 397 RLAEGDLSNGLT-VEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSK 455
+ GD + + V +L+ + I S+ + FR IG+ D+E NAL
Sbjct: 397 YVENGDFTQEIACVPKNKDLQALRNTINSIIQYFRNQIGA------DIESLNNALEHYKN 450
Query: 456 -DVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVV 514
D T I ++ +N + + + + S A+ S + V
Sbjct: 451 LDFTHHIQNPKA----------NMEKALNTLGQEISSMLKASLGFANALNHESKDLKTCV 500
Query: 515 SIANEGSQKGDEALKR----IEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTN 570
+ + K + +LK +E+I ++++ I+ ++ +I+ + ++I IA+QTN
Sbjct: 501 DNLTKTAHKQERSLKNTTQSLEEITNIITMIDSKSQEMISQGEDIKSVVDMIRDIADQTN 560
Query: 571 LLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATK 630
LLALNAAIEAARAGE GRGFAVVA E+RKLAE ++++ I++ I+ + I + E+ K
Sbjct: 561 LLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANINILVQSIADNAESIK 620
Query: 631 ---EGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDK 680
+GV I S L+ + IA + S ++ + + I+ E+V K
Sbjct: 621 MQNKGVENIHNSINALQQDVQDNLTIANHSLQVSTKIDGISQDIL---EDVSK 670
>emb|CAB93675.1| (AJ404229) putative receptor protein [Rhodobacter sphaeroides]
Length = 553
Score = 112 bits (278), Expect = 1e-23
Identities = 93/353 (26%), Positives = 156/353 (43%), Gaps = 50/353 (14%)
Query: 380 VSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEM 439
++ + G L +R+A GDLS R E+ ++++ + E RE +G + +
Sbjct: 206 ITMSIAGGLRRALDLSKRVAAGDLSAQADARGRDEIAELLKSNNLMVEKLREVVGGVSSV 265
Query: 440 ANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEES 499
A + + +A S+ +++ ++ A ++ S ++ I + D
Sbjct: 266 ARQVSSGSGEMAATSEQLSQGASEQASATEEASASVEQMAANIKQAADN----------- 314
Query: 500 VRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEIT 559
AM+ TE + A K ED + + +EE V + R+I +
Sbjct: 315 --AMQ------TERI------------ASKAAEDARASGAAVEEAVGAM----RSIADKI 350
Query: 560 NVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKIT 619
++ IA QT+LLALNAA+EAARAGE GRGFAVVA E+RKLAE S+ AA
Sbjct: 351 MMVQEIARQTDLLALNAAVEAARAGEHGRGFAVVASEVRKLAERSQAAA----------- 399
Query: 620 DEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVD 679
EI + T + GE L I + + T + S + +Q+ +++D
Sbjct: 400 AEISQLSAGTVRAATGAGEMLNQLVPDIENTSRLVTDISVASRELAAGAQQVATAIQQLD 459
Query: 680 KALR----ALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVG 728
K + A + LA A E + AE++ + + A AA +L+ + G
Sbjct: 460 KVTQQNSSASQQLAGGANELSGQAEQLEATVSFFRLADAAPAPAAPQLRIVEG 512
>pir||B64530 methyl-accepting chemotaxis transducer (tlpC) - Helicobacter pylori
(strain 26695) >gi|2313163|gb|AAD07152.1| (AE000530)
methyl-accepting chemotaxis transducer (tlpC)
[Helicobacter pylori 26695]
Length = 673
Score = 112 bits (277), Expect = 2e-23
Identities = 151/705 (21%), Positives = 283/705 (39%), Gaps = 86/705 (12%)
Query: 6 KIILMAIMSAVITMAIFGGVTIYSFNKVYGVIKGEIQAPAIEQGGQLAMSAAEVAEKMFD 65
KI++M ++ A+ G + Y KV V++ Q +L A++
Sbjct: 9 KIVMMVCAVVIVISAVMGVIISY---KVESVLQS--------QATELLQKKAQLVSFKIQ 57
Query: 66 DFFARVADYGTMATEVVKEAYAKGLDSNETAMREFLLSEFKKIKELNKDVSYVYFGDEE- 124
R+ M +++ + + ++ +LSEF VS +Y + E
Sbjct: 58 GIMKRIF----MGANTLEKFLSDENSAINDTLKRRMLSEFLLANPHVLLVSAIYTNNNER 113
Query: 125 -------GHMYMYPPDELPEGYDPRVRPWYVQAKEKGGAIITEPYRDAATGQWVITYAVP 177
YP L E ++R ++PY G + +
Sbjct: 114 VITAMSMDSKIAYPNTTLNENMTNQIR-------SLKSITHSDPYYKEVNGDKIYGMDIT 166
Query: 178 VYVNGQFKGVIG-------LDVFVSTLLNETKK--IKLGKTGYIAI-----IDQNGMTLV 223
+ + G+ + IG +D F + ++ + K +GK G + I I ++ +
Sbjct: 167 LPLMGKNQNAIGALNFFLNIDAFYTDVVGKKKSNTFLMGKDGRLLINPNREIQDKILSAI 226
Query: 224 HPNEEFINKLNIFQVPELKDLADELKKGKDEGYVLYTFQGIKKIGGYKRLKTTG----WI 279
+P+ + + E L+ G E TF I+ ++ G W
Sbjct: 227 NPDRRVAKAVEYYNQNEAGTLSYHSLSGNTE-----TFLAIQPFDFFEEKGNNGNHWRWA 281
Query: 280 VVATVPLSDITGPILSATDTAINKMKMIVIQGFAVGFVIIVAILVVIYKIAS---NTLAP 336
+ V S + AT+T + +++ + F++ + + +I K S NTL
Sbjct: 282 IGKYVNKSLV---FKEATNTKFIIITTLILGVLVLAFLVFIIVSNLITKRISRVNNTLND 338
Query: 337 LEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLE 396
L + L S Y +I ++ +++ E++ D N+I +
Sbjct: 339 FFNLLNNPKNNHAISLTPPSAY-DEIGQMQASINENILKTQESIQADNKAIQNSI-EVTN 396
Query: 397 RLAEGDLSNGLT-VEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSK 455
+ GD + + V +L+ + I S+ + FR IG+ +E N NAL
Sbjct: 397 YVENGDFTQEIACVPKNKDLQALRNTINSIIQYFRNQIGANIESLN------NALEHYKN 450
Query: 456 -DVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVV 514
D T I ++ +N + + + + S A+ S + V
Sbjct: 451 LDFTHHIQNPKA----------NMEKALNTLGQEISSMLKASLGFANALNHESKDLKTCV 500
Query: 515 SIANEGSQKGDEALKR----IEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTN 570
+ + K + +LK +E+I ++++ I+ ++ +I+ + ++I IA+QTN
Sbjct: 501 DNLTKTAHKQERSLKNTTQSLEEITNIITTIDSKSQEMISQGEDIKSVVDMIRDIADQTN 560
Query: 571 LLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATK 630
LLALNAAIEAARAGE GRGFAVVA E+RKLAE ++++ I++ I+ + I + E+ K
Sbjct: 561 LLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANINILVQSIADNAESIK 620
Query: 631 ---EGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIV 672
+GV I S L+ + IA + S ++ + + I+
Sbjct: 621 MQNKGVENIHNSINALQQDVQDNLTIANHSLQVSTKIDGISQDIL 665
>gi|10955060 mclB [Agrobacterium tumefaciens] >gi|8572697|gb|AAF77143.1|
(AF242881) mclB [Agrobacterium tumefaciens]
Length = 171
Score = 111 bits (276), Expect = 2e-23
Identities = 64/195 (32%), Positives = 103/195 (52%), Gaps = 28/195 (14%)
Query: 545 VSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEES 604
++++ SR IE+I VI IA QTNLLALNA +EAARAG+AG+GFAVVA+E+R+LA+ S
Sbjct: 1 MARIEAASRQIEQIIGVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAREVRELAQRS 60
Query: 605 KQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERM 664
+AA IK +I++ T E+ + +QET +
Sbjct: 61 AKAAQEIKGLINRSTSEVNVR----------------------------SQFVQETGTVL 92
Query: 665 TTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELK 724
+ QIV + V+ RA + + + +E ++ ++ +Q A +EE A++EL
Sbjct: 93 AKISAQIVTINQHVEMIARASHDQSGALQEVNSTVNQMDQMTQQNAAMVEETTAASRELA 152
Query: 725 DMVGRMRQIVGKFKV 739
+ +V +FK+
Sbjct: 153 SQANDLLALVQQFKI 167
>pir||C64532 methyl-accepting chemotaxis protein (tlpA) - Helicobacter pylori
(strain 26695) >gi|2313179|gb|AAD07167.1| (AE000531)
methyl-accepting chemotaxis protein (tlpA) [Helicobacter
pylori 26695]
Length = 675
Score = 111 bits (276), Expect = 2e-23
Identities = 105/395 (26%), Positives = 183/395 (45%), Gaps = 48/395 (12%)
Query: 313 AVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQI-RYLERDEIG 371
+V FV+I+A +++ LA + + +A+ RL+ VS L + L
Sbjct: 299 SVRFVVIIASAIMV-------LALIIAITLLMRAIVSSRLEAVSSTLSHFFKLLNNQANS 351
Query: 372 ALIQAFEAVSKDLVGTLN-AISKKLERLAE---------------------GDLSNGLTV 409
+ I+ EA S D +G + AI+K + + + G+ + +T
Sbjct: 352 SGIKLIEAKSNDELGRMQTAINKNILQTQKIMQEDRQAVQDTIKVVSDVKAGNFAVRITA 411
Query: 410 EVRG-ELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAI 468
E +L+++ + + + + +ES+G+ + + + + L + + A +V
Sbjct: 412 EPASPDLKELRDALNGIMDYLQESVGTHMPSIFKIFESYSGLDFRGR-IQNASGRVELVT 470
Query: 469 QQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEAL 528
+ E Q+ ET + + + +E V+ +E+ S N + E
Sbjct: 471 NALGQEIQKMLETSSNFAKDLANDSANLKECVQNLEKAS----------NSQHKSLMETS 520
Query: 529 KRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGR 588
K IE+I + + + E ++I+ I +I IA+QTNLLALNAAIEAARAGE GR
Sbjct: 521 KTIENITTSIQGVSSQSEAMIEQGQDIKSIVEIIRDIADQTNLLALNAAIEAARAGEHGR 580
Query: 589 GFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGE---SSETLRD 645
GFAVVA E+RKLAE ++++ I++ I+ + I + E+ K V + E S E LR
Sbjct: 581 GFAVVADEVRKLAERTQKSLSEIEANINILVQSISDTSESIKNQVKEVEEINASIEALRS 640
Query: 646 TIGYLANIATLLQETSERMTTVKEQIVRTQEEVDK 680
IA+ E S+ + V I+ E+V+K
Sbjct: 641 VTEGNLKIASDSLEISQEIDKVSNDIL---EDVNK 672
>pir||B71975 methyl-accepting chemotaxis protein (MCP) - Helicobacter pylori
(strain J99) >gi|4154599|gb|AAD05672.1| (AE001448)
methyl-accepting chemotaxis protein (MCP) [Helicobacter
pylori J99]
Length = 675
Score = 111 bits (275), Expect = 3e-23
Identities = 100/387 (25%), Positives = 180/387 (45%), Gaps = 29/387 (7%)
Query: 306 MIVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYL 365
++V+ + +I+AI +++ I SN L + L + S +K +
Sbjct: 303 VVVVASAIMVLALIIAITLLMRAIVSNRLEVVSSTLSHFFKLLNNQAH--SSDIKLVEAR 360
Query: 366 ERDEIGAL--------IQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRG-ELR 416
DE+G + +Q + + +D + I K + + G+ + +T E +L+
Sbjct: 361 SNDELGRMQTAINKNILQTQKTMQEDRQAVQDTI-KVVSDVKAGNFAVRITAEPASPDLK 419
Query: 417 DIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQ 476
++ + + + + +ES+G+ + + + + L + + A +V + E Q
Sbjct: 420 ELRDALNGIMDYLQESVGTHMPSIFKIFESYSGLDFRGR-IQNASGRVELVTNALGQEIQ 478
Query: 477 RQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQH 536
+ ET + + + +E V+ +E+ S N + E K IE+I
Sbjct: 479 KMLETSSNFAKDLANDSANLKECVQNLEKAS----------NSQHKSLMETSKTIENITT 528
Query: 537 MMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQE 596
+ + + E ++I+ I +I IA+QTNLLALNAAIEAARAGE GRGFAVVA E
Sbjct: 529 SIQGVSSQSEAMIEQGKDIKSIVEIIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADE 588
Query: 597 IRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGE---SSETLRDTIGYLANI 653
+RKLAE ++++ I++ I+ + I + E+ K V + E S E LR I
Sbjct: 589 VRKLAERTQKSLSEIEANINILVQSISDTSESIKNQVKEVEEINASIEALRSVTEGNLKI 648
Query: 654 ATLLQETSERMTTVKEQIVRTQEEVDK 680
A+ E S+ + V I+ E+V+K
Sbjct: 649 ASDSLEISQEIDKVSNDIL---EDVNK 672
>pir||H81324 probable MCP-domain signal transduction protein Cj1190c [imported]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6968623|emb|CAB73444.1| (AL139077) putative
MCP-domain signal transduction protein [Campylobacter
jejuni]
Length = 459
Score = 104 bits (258), Expect = 3e-21
Identities = 92/362 (25%), Positives = 164/362 (44%), Gaps = 51/362 (14%)
Query: 291 GPILSATDTAINKMKMIVIQGF--AVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALA 348
G +L+ + I + +I I F A+ FV+I +++ + + + ++KL + L
Sbjct: 5 GLLLTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLLRQHKDEQIMIDKLLVLCRELK 64
Query: 349 EGR-------LKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEG 401
EG +K S+ L +I D + I EA ++ + T + S+K E +
Sbjct: 65 EGNFDNRIIYVKTKSKKLAEI----ADNLNNTIDGLEAYLRE-INTSISCSQKGEFYRKA 119
Query: 402 DLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKDVTEAI 461
L GL + I + + ++ T R + NAL++ D+ ++
Sbjct: 120 -LPEGLKGIFAHNIEFINKALANIEVTARSTF-------------KNALSRTLMDL--SL 163
Query: 462 NQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSIANEGS 521
N+ + Q+S + + + D + ++ T+ E+ ++ A+ ++ + N
Sbjct: 164 GNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDVVNSS- 222
Query: 522 QKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAA 581
+ETV S+NI + VI IA+QTNLLALNAAIEAA
Sbjct: 223 --------------------KETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAA 262
Query: 582 RAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSE 641
RAGE GRGFAVVA E+RKLAE ++++ I I + + +++ +++ ES E
Sbjct: 263 RAGEHGRGFAVVADEVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEE 322
Query: 642 TL 643
+
Sbjct: 323 RI 324
>pir||F71975 methyl-accepting chemotaxis protein (MCP) - Helicobacter pylori
(strain J99) >gi|4154603|gb|AAD05676.1| (AE001448)
methyl-accepting chemotaxis protein (MCP) [Helicobacter
pylori J99]
Length = 564
Score = 104 bits (257), Expect = 3e-21
Identities = 122/508 (24%), Positives = 224/508 (44%), Gaps = 83/508 (16%)
Query: 211 YIAIIDQNGMTLVHPNEEFINKLNIFQVPELKDLADELKKGKDEGYVLYTFQGIKKIGGY 270
Y+ ++D+NG+ L P +N + Q D + YV + KK GGY
Sbjct: 101 YMVVVDKNGVVLFDP----VNPKTVGQSGLSLQSVDGVY------YVRGYLEAAKKGGGY 150
Query: 271 ---KRLKTTGWIVVATVPLS---DITGPILSATD--TAINKMKMIVIQGFAVGFVIIVAI 322
K K G + S +++ +++AT T IN + +G F
Sbjct: 151 TYYKMPKYDGGVPEKKFAYSHYDEVSQMVIAATSYYTDINTENQAIKEGVNKVFNENTTK 210
Query: 323 LVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLER-DEIGALIQAFEAVS 381
L + A+ L L L YA ++R ++R DE+ I AF
Sbjct: 211 LFLWILTATIALVVLT-LIYA-----------------KLRIVKRIDELVLKINAFSRGD 252
Query: 382 KDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMAN 441
KDL ++ + + + +++ L VE R I+E+I+ ++ + S+ LV++
Sbjct: 253 KDLRAKID-VGDRNDEISQVGRGINLFVE---NARLIMEEIKGISTLNKTSMDKLVQITQ 308
Query: 442 DLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVR 501
+ +K K+ + +N V N+ TD +A S+
Sbjct: 309 ETQKSM-------KNSSTTLNSVK-----------------NKATD----IASMMNASIE 340
Query: 502 AMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRN---IEEI 558
+ + E + E + +I + H EE SKV ++SRN ++ I
Sbjct: 341 QSQGLRKRLIETQGLVKESKDAIGDLFSQITESAHTE---EELSSKVEQLSRNADDVKSI 397
Query: 559 TNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKI 618
++I IA+QTNLLALNAAIEAARAGE GRGFAVVA E+R LA ++++ I S I I
Sbjct: 398 LDIINDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRNLAGRTQKSLAEINSTIMVI 457
Query: 619 TDEIKEA---VEATKEGVSVIGESSETLRDTIGYL-ANIATLLQETSERMTTVKEQIVRT 674
EI + + + + + + S+++++T + +N+++++ ++++ M + ++
Sbjct: 458 VQEINDVSSQMNLNSQKMERLSDMSKSVQETYEKMSSNLSSVVLDSNQSM----DDYAKS 513
Query: 675 QEEVDKALRALENLAASAEETTASAEEV 702
+++ + + A +T A + ++
Sbjct: 514 GHQIEAMVSDFAEVEKVASKTLADSSDI 541
>pir||G71373 probable methyl-accepting chemotaxis protein (mcp1) - syphilis
spirochete >gi|1354776|gb|AAB01990.1| (U56999) MCP-1
[Treponema pallidum] >gi|3322296|gb|AAC65035.1|
(AE001189) methyl-accepting chemotaxis protein (mcp1)
[Treponema pallidum]
Length = 597
Score = 102 bits (251), Expect = 2e-20
Identities = 86/360 (23%), Positives = 159/360 (43%), Gaps = 35/360 (9%)
Query: 388 LNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRA 447
L++ S++LERL GE+R +++ + E++ ++ DL +
Sbjct: 233 LSSSSQRLERLF-------------GEVRRTAQELSHNEQNLTETMDRAEQVVQDLTRYT 279
Query: 448 NALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFS 507
A V E + E Q + + ++ E+ + M + + E++ A+E
Sbjct: 280 GA-------VREELAVQGEGFSQTRVVNEELGSSLRELDEQMEAQGERAREALEAVERLG 332
Query: 508 GAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAE 567
V + + + + + + R+ E + ++ SR + ++ I+
Sbjct: 333 STVHNLRGKFSAVHADFEAITTASKTGKECVGRMMEVIEEITSRSRGLAVTNALVVDISG 392
Query: 568 QTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVE 627
+TNLLA+NAAIEAA AG+AGRGFAVVA EIR LA ++ AA++ K+ EI+ +
Sbjct: 393 RTNLLAMNAAIEAAHAGDAGRGFAVVAGEIRSLA--ARTAAES--GATGKMLKEIEAVIG 448
Query: 628 ATKEGVSVIGESSETLRDTIG----YLANIATLLQ-------ETSERMTTVKEQIVRTQE 676
+ + + +S +R + LA+I+ +Q T ERM TV Q+ +E
Sbjct: 449 ESGHASAGVAQSFTDIRGKVDGFSTILADISGAVQVVGEENERTVERMRTVTGQLCTARE 508
Query: 677 EVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGK 736
+ AA AE T A++V + +E +E L + + R+++ +
Sbjct: 509 QGKVIAEVCTRGAAHAERLTRDAQKVCAEVETMIGNVEVLTEVVARTRAVELHTREVIAR 568
>gb|AAC04555.1| (AF047698) putative methyl-accepting chemotaxis protein [Treponema
pallidum]
Length = 644
Score = 100 bits (247), Expect = 5e-20
Identities = 102/392 (26%), Positives = 169/392 (43%), Gaps = 34/392 (8%)
Query: 307 IVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLE 366
I I F +++ A L+V + S + P E L A E+L YL
Sbjct: 204 IAIALFVATLLLVSAPLLV--RTDSQNITPAELLTMAGTFGLCASAVSCMEFLL-CAYLT 260
Query: 367 RDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVT 426
EI L V + +GT + + R E S GL LRD R+
Sbjct: 261 SREITRL-----RVLAECIGTGDYTCADVPR--ETRTSIGLLARSLSSLRD---KDRAFF 310
Query: 427 ETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEIT 486
F + S +A+ E L + ++ E I+ VNE + + +E + +
Sbjct: 311 SRFLQLTQSSSAIAHTAETDIAHLEEAARTTKEEIDHVNENVTAQTATISSSKEIVGTMV 370
Query: 487 DGM-RLVAQTSEES------VRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMS 539
+G+ RL A ES + +E+ + + I + + ++ +
Sbjct: 371 EGVGRLNASVEAESETVTRSITLVEQMVEKIHSIEKIIESNDARVGRLREETNRAGNLTN 430
Query: 540 RIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRK 599
R E +++ S+ + + + VI IA QT LLA+NAAIEAA AG+ GRGFAVVA EIRK
Sbjct: 431 RSLELTQNISKSSKALLQASLVIRKIASQTTLLAMNAAIEAAHAGQDGRGFAVVADEIRK 490
Query: 600 LAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQE 659
LAEES + I S++ ++T++I+ I + +E+L +N+ L +E
Sbjct: 491 LAEESNEQGKIISSVLVQLTEKIEH-----------IAQQAESLSK---QFSNLFVLAEE 536
Query: 660 TSERMTTVKEQIVRTQEEVDKALRALENLAAS 691
+R +TV + + R++E + +
Sbjct: 537 VKQRESTVMHAMEEQSSGGEYIRRSMEAITGN 568
>pir||F71298 probable methyl-accepting chemotaxis protein (mcp2-2) - syphilis
spirochete >gi|3322938|gb|AAC65613.1| (AE001239)
methyl-accepting chemotaxis protein (mcp2-2) [Treponema
pallidum]
Length = 654
Score = 100 bits (247), Expect = 5e-20
Identities = 102/392 (26%), Positives = 169/392 (43%), Gaps = 34/392 (8%)
Query: 307 IVIQGFAVGFVIIVAILVVIYKIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLE 366
I I F +++ A L+V + S + P E L A E+L YL
Sbjct: 214 IAIALFVATLLLVSAPLLV--RTDSQNITPAELLTMAGTFGLCASAVSCMEFLL-CAYLT 270
Query: 367 RDEIGALIQAFEAVSKDLVGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVT 426
EI L V + +GT + + R E S GL LRD R+
Sbjct: 271 SREITRL-----RVLAECIGTGDYTCADVPR--ETRTSIGLLARSLSSLRD---KDRAFF 320
Query: 427 ETFRESIGSLVEMANDLEKRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEIT 486
F + S +A+ E L + ++ E I+ VNE + + +E + +
Sbjct: 321 SRFLQLTQSSSAIAHTAETDIAHLEEAARTTKEEIDHVNENVTAQTATISSSKEIVGTMV 380
Query: 487 DGM-RLVAQTSEES------VRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMS 539
+G+ RL A ES + +E+ + + I + + ++ +
Sbjct: 381 EGVGRLNASVEAESETVTRSITLVEQMVEKIHSIEKIIESNDARVGRLREETNRAGNLTN 440
Query: 540 RIEETVSKVAEMSRNIEEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRK 599
R E +++ S+ + + + VI IA QT LLA+NAAIEAA AG+ GRGFAVVA EIRK
Sbjct: 441 RSLELTQNISKSSKALLQASLVIRKIASQTTLLAMNAAIEAAHAGQDGRGFAVVADEIRK 500
Query: 600 LAEESKQAADNIKSIIDKITDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQE 659
LAEES + I S++ ++T++I+ I + +E+L +N+ L +E
Sbjct: 501 LAEESNEQGKIISSVLVQLTEKIEH-----------IAQQAESLSK---QFSNLFVLAEE 546
Query: 660 TSERMTTVKEQIVRTQEEVDKALRALENLAAS 691
+R +TV + + R++E + +
Sbjct: 547 VKQRESTVMHAMEEQSSGGEYIRRSMEAITGN 578
>pir||F81369 probable MCP-domain signal transduction protein Cj0951c [imported]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6968388|emb|CAB73208.1| (AL139076) putative
MCP-domain signal transduction protein [Campylobacter
jejuni]
Length = 224
Score = 88.5 bits (216), Expect = 2e-16
Identities = 70/249 (28%), Positives = 121/249 (48%), Gaps = 38/249 (15%)
Query: 496 SEESVRAMEEFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNI 555
+E+S +E+ ++ V + + SQ +E K++E++ + NI
Sbjct: 9 NEKSFLLLEQMLKSLFNVANKVSTVSQNENELAKKVENM--------------VNQAGNI 54
Query: 556 EEITNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSII 615
++ T ++ IA++TNLL+LNA IEAARAG GRGF+V+A+++R+LA+ S++ N+ I
Sbjct: 55 QKATQMMDEIADKTNLLSLNAGIEAARAGAFGRGFSVIAEDVRQLAQNSEEFLGNVAQIT 114
Query: 616 DKITDEIKEAVEATKEGVSVIGESSETLRDTIGYL---ANIATLLQETSERMTT-VKEQI 671
++ I E K+ +S + L D L AN L E + + T E+I
Sbjct: 115 KELLQSINEVSAELKKN----AQSVQALNDDTALLVDDANEVKLCNEDARALVTQCTEKI 170
Query: 672 VRTQEEVDKAL-RALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRM 730
+QE + L R EN+ E + EE+S + Q A ELK + +
Sbjct: 171 KISQENIQNLLSRMQENV-----EVSEKNEEISKILLQ----------VADELKIVCHNL 215
Query: 731 RQIVGKFKV 739
+ +F++
Sbjct: 216 ESELNQFQI 224
>dbj|BAA96489.1| (AB039333) chemotactic transducer CtpL [Pseudomonas aeruginosa]
Length = 632
Score = 87.8 bits (214), Expect = 4e-16
Identities = 64/264 (24%), Positives = 130/264 (49%), Gaps = 16/264 (6%)
Query: 328 KIASNTLAPLEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQ---AFEAVSKDL 384
+++++T A L+ ++ A L + Q+R ++ I ++ A +++ + L
Sbjct: 270 QLSADTGARLDAVRQALATLEPQVRGERQRLQGQVRLIQGGMIALILLIALAIDSLQRRL 329
Query: 385 VGTLNAISKKLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLE 444
L + L A+GD S +++ R ED+R++ ++ L E+ +
Sbjct: 330 ARVLGQLVPALSAWADGDFSRPISLRTR------TEDLRNLEDSLNRLRSFLAELVGAIH 383
Query: 445 KRANALAQVSKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAME 504
+RA +A S+ + E + ++ +++ + + + ++ + ++ ++ VA + ++ A
Sbjct: 384 RRAEQVAGSSQTLAEVSSGLHAGVERQAGDTGQIRDALGDMEAAIQQVAGDASQTADASR 443
Query: 505 EFSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITS 564
AV G + E+L + ++ + +++ ++AE S I + VI S
Sbjct: 444 SAGQAV-------EHGQRVIGESLGGLRELVDEVQGNAQSIERLAEESATIGSVLTVIRS 496
Query: 565 IAEQTNLLALNAAIEAARAGEAGR 588
IAEQTNLLALNAAIEAARAG+ GR
Sbjct: 497 IAEQTNLLALNAAIEAARAGDQGR 520
>pir||T13030 microtubule binding protein D-CLIP-190 - fruit fly (Drosophila
melanogaster) >gi|2773363|gb|AAB96783.1| (AF041382)
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster]
Length = 1690
Score = 80.4 bits (195), Expect = 6e-14
Identities = 95/432 (21%), Positives = 187/432 (42%), Gaps = 63/432 (14%)
Query: 337 LEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGT---LNAISK 393
LE+L+ A A E K V++ DEI L E +L T L A SK
Sbjct: 838 LEQLQQQAAASGEEGSKTVAKL--------HDEISQLKSQAEETQSELKSTESNLEAKSK 889
Query: 394 KLERLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQV 453
+LE A G L + G+L++ I ++S E E+ +L D+E + L
Sbjct: 890 QLEA-ANGSLEE--EAKKSGQLQEQITKLKSEVE---ETQAALSSYHTDVESKTKQLEAA 943
Query: 454 SKDVTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAM--------EE 505
+ A+ +VN+ + EA Q+ + EITD + Q S A+ +E
Sbjct: 944 NA----ALEKVNKEYAESRAEASDLQDKVKEITDTLHAELQAERSSSSALHTKLSKFSDE 999
Query: 506 FSGAVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKV-----------AEMSRN 554
+ E+ S A+ SQ+ + K +++++ + +++ +K+ E +N
Sbjct: 1000 IATGHKELTSKADAWSQEMLQKEKELQELRQQLQDSQDSQTKLKAEGERKEKSFEESIKN 1059
Query: 555 I-EEIT-----NVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAA 608
+ EE+T N+ S QT + L +E A Q K+A E Q
Sbjct: 1060 LQEEVTKAKTENLELSTGTQTTIKDLQERLEITNA---------ELQHKEKMASEDAQKI 1110
Query: 609 DNIKSIIDKITDEIKEA-VEATKEGVSVIGESSETLRDTIGYLANIATLLQETS-----E 662
++K++++ I ++ A + AT +S + E + + ++ + + + + E
Sbjct: 1111 ADLKTLVEAI--QVANANISATNAELSTVLEVLQAEKSETNHIFELFEMEADMNSERLIE 1168
Query: 663 RMTTVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQE 722
++T +KE++ T ++D+ + E L ++ S +++ + + E++++ QE
Sbjct: 1169 KVTGIKEELKETHLQLDERQKKFEELEEKLKQAQQSEQKLQQESQTSKEKLTEIQQSLQE 1228
Query: 723 LKDMVGRMRQIV 734
L+D V + ++V
Sbjct: 1229 LQDSVKQKEELV 1240
Score = 71.8 bits (173), Expect = 2e-11
Identities = 80/399 (20%), Positives = 164/399 (41%), Gaps = 34/399 (8%)
Query: 337 LEKLKYAAQALAEGRLKQVSEY-LKQIRYLERDE-IGALIQAFEAVSKDLVGTLNAISKK 394
L+ LK + +L R+ + E + Q RDE I L Q + V+ L
Sbjct: 596 LQNLKATSDSLESERVNKSDECEILQTEVRMRDEQIRELNQQLDEVTTQL---------N 646
Query: 395 LERLAEGDLSNGLTVEVRG--ELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQ 452
+++ L + L ++ G E ++E +E ++ LEK+ + L Q
Sbjct: 647 VQKADSSALDDMLRLQKEGTEEKSTLLEKTEKELVQIKEQAAKTLQDKEQLEKQISDLKQ 706
Query: 453 VSKDVTEAINQVNEAIQQVSIEAQRQQETI----NEITDGMRLVAQTSEESVRAMEEFSG 508
+++ + AI Q+ +E + ++ + NE+ D + + SE V E
Sbjct: 707 LAEQEKLVREKTENAINQIQLEKESIEQQLALKQNELEDFQK---KQSESEVHLQE---- 759
Query: 509 AVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQ 568
I + +QK E ++ E ++ + ++EE ++ +EE+ +I ++
Sbjct: 760 -------IKAQNTQKDLELVESGESLKKLQQQLEEKTLGHEKLQAALEELKKEKETIIKE 812
Query: 569 TNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEAVEA 628
++A + A VV ++ +L +++ + + + K+ DEI +
Sbjct: 813 KEQELQQLQSKSAESESA---LKVVQVQLEQLQQQAAASGEEGSKTVAKLHDEISQLKSQ 869
Query: 629 TKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRALENL 688
+E S + + L L L+E +++ ++EQI + + EV++ AL +
Sbjct: 870 AEETQSELKSTESNLEAKSKQLEAANGSLEEEAKKSGQLQEQITKLKSEVEETQAALSSY 929
Query: 689 AASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMV 727
E T E ++A+E+ E R A +L+D V
Sbjct: 930 HTDVESKTKQLEAANAALEKVNKEYAESRAEASDLQDKV 968
>gb|AAF53604.1| (AE003655) CLIP-190 gene product [alt 1] [Drosophila melanogaster]
>gi|7298380|gb|AAF53605.1| (AE003655) CLIP-190 gene
product [alt 2] [Drosophila melanogaster]
Length = 1690
Score = 80.4 bits (195), Expect = 6e-14
Identities = 88/429 (20%), Positives = 183/429 (42%), Gaps = 57/429 (13%)
Query: 337 LEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLE 396
LE+L+ A A E K V++ DEI L E +L T + + K +
Sbjct: 838 LEQLQQQAAASGEEGSKTVAKL--------HDEISQLKSQAEETQSELKSTQSNLEAKSK 889
Query: 397 RLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKD 456
+L + +NG E + ++E I + E+ +L D+E + L +
Sbjct: 890 QL---EAANGSLEEEAKKSGHLLEQITKLKSEVGETQAALSSCHTDVESKTKQLEAANA- 945
Query: 457 VTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAM--------EEFSG 508
A+ +VN+ + EA Q+ + EITD + Q S A+ +E +
Sbjct: 946 ---ALEKVNKEYAESRAEASDLQDKVKEITDTLHAELQAERSSSSALHTKLSKFSDEIAT 1002
Query: 509 AVTEVVSIANEGSQKGDEALKRIEDIQHMMSRIEETVSKV-----------AEMSRNI-E 556
E+ S A+ SQ+ + K +++++ + +++ +K+ E +N+ E
Sbjct: 1003 GHKELTSKADAWSQEMLQKEKELQELRQQLQDSQDSQTKLKAEGERKEKSFEESIKNLQE 1062
Query: 557 EIT-----NVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNI 611
E+T N+ S QT + L +E A Q K+A E Q ++
Sbjct: 1063 EVTKAKTENLELSTGTQTTIKDLQERLEITNA---------ELQHKEKMASEDAQKIADL 1113
Query: 612 KSIIDKITDEIKEA-VEATKEGVSVIGESSETLRDTIGYLANIATLLQETS-----ERMT 665
K++++ I ++ A + AT +S + E + + ++ + + + + E++T
Sbjct: 1114 KTLVEAI--QVANANISATNAELSTVLEVLQAEKSETNHIFELFEMEADMNSERLIEKVT 1171
Query: 666 TVKEQIVRTQEEVDKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKD 725
+KE++ T ++D+ + E L ++ S +++ + + E++++ QEL+D
Sbjct: 1172 GIKEELKETHLQLDERQKKFEELEEKLKQAQQSEQKLQQESQTSKEKLTEIQQSLQELQD 1231
Query: 726 MVGRMRQIV 734
V + ++V
Sbjct: 1232 SVKQKEELV 1240
>gb|AAC47238.1| (U49263) non-muscle myosin heavy chain II [Caenorhabditis elegans]
Length = 2003
Score = 78.0 bits (189), Expect = 3e-13
Identities = 85/413 (20%), Positives = 182/413 (43%), Gaps = 46/413 (11%)
Query: 337 LEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLE 396
LEK + A+ L +++ SE L QI +E+ A Q E +++ L+ +
Sbjct: 1082 LEKTR-KAEELTNQLMRKESE-LSQISIRNDEELAAR-QQLEREIREIRAQLD------D 1132
Query: 397 RLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKD 456
+ E + + RD+ E++ S + ES V + KR A + K
Sbjct: 1133 AIEETNKEQAARQKAEKARRDMAEELESYKQELEESNDKTVLHSQLKAKRDEEYAHLQKQ 1192
Query: 457 VTEAINQVNEAIQQVSIEAQRQQETINEITDGMR---LVAQTSEESVRA-MEEFSGAVTE 512
+ E + E ++++ + Q++ E +NE D ++ + A ++ S + E F ++
Sbjct: 1193 LEETVKSSEEVVEEMKAQNQKKIEELNETIDQLKRQKISADKAKSSAESDNENFRAELSN 1252
Query: 513 VVSIANEGSQKGDEA----LKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQ 568
+ S E +K A +++ ++ M S +++ ++K+++M+ +E I + A++
Sbjct: 1253 IASARLEAEKKRKAAETSLMEKDHKMREMQSNLDDLMAKLSKMNNELESIQKAKS--ADE 1310
Query: 569 T---NLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEA 625
T NLL NA+++ + E+ + +EE ++ + + I ++ +++ A
Sbjct: 1311 TLNSNLLKKNASLD------------MQLSELTEASEEDRRTRATLNNKIRQLEEDLAVA 1358
Query: 626 VEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRAL 685
VEA + + + + +++ LA L E + +E + +++ +K L A
Sbjct: 1359 VEARDDALDAQEKIEKEVKEVKSLLAEARKKLDEEN------REVMEELRKKKEKELSAE 1412
Query: 686 ENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFK 738
+ A AE+ AE AI+E +EL D+V R++ K +
Sbjct: 1413 KERADMAEQARDKAERAKKK------AIQEAEDVQKELTDVVAATREMERKMR 1459
>pir||T21174 hypothetical protein F20G4.3 - Caenorhabditis elegans
>gi|3876134|emb|CAA99841.1| (Z75538) contains similarity
to Pfam domain: PF00063 (Myosin head (motor domain)),
Score=1274.6, E-value=0, N=1; PF01576 (Myosin tail),
Score=1110.6, E-value=0, N=3~cDNA EST yk15h6.3 comes from
this gene~cDNA EST yk7h10.3 comes from this gene~cDNA EST
> >gi|3880037|emb|CAA99931.1| (Z75550) contains
similarity to Pfam domain: PF00063 (Myosin head (motor
domain)), Score=1274.6, E-value=0, N=1; PF01576 (Myosin
tail), Score=1110.6, E-value=0, N=3~cDNA EST yk15h6.3
comes from this gene~cDNA EST yk7h10.3 comes from this
gene~cDNA EST >
Length = 2020
Score = 78.0 bits (189), Expect = 3e-13
Identities = 85/413 (20%), Positives = 182/413 (43%), Gaps = 46/413 (11%)
Query: 337 LEKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLE 396
LEK + A+ L +++ SE L QI +E+ A Q E +++ L+ +
Sbjct: 1099 LEKTR-KAEELTNQLMRKESE-LSQISIRNDEELAAR-QQLEREIREIRAQLD------D 1149
Query: 397 RLAEGDLSNGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKD 456
+ E + + RD+ E++ S + ES V + KR A + K
Sbjct: 1150 AIEETNKEKAARQKAEKARRDMAEELESYKQELEESNDKTVLHSQLKAKRDEEYAHLQKQ 1209
Query: 457 VTEAINQVNEAIQQVSIEAQRQQETINEITDGMR---LVAQTSEESVRA-MEEFSGAVTE 512
+ E + E ++++ + Q++ E +NE D ++ + A ++ S + E F ++
Sbjct: 1210 LEETVKSSEEVVEEMKAQNQKKIEELNETIDQLKRQKISADKAKSSAESDNENFRAELSN 1269
Query: 513 VVSIANEGSQKGDEA----LKRIEDIQHMMSRIEETVSKVAEMSRNIEEITNVITSIAEQ 568
+ S E +K A +++ ++ M S +++ ++K+++M+ +E I + A++
Sbjct: 1270 IASARLEAEKKRKAAETSLMEKDHKMREMQSNLDDLMAKLSKMNNELESIQKAKS--ADE 1327
Query: 569 T---NLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKITDEIKEA 625
T NLL NA+++ + E+ + +EE ++ + + I ++ +++ A
Sbjct: 1328 TLNSNLLKKNASLD------------MQLSELTEASEEDRRTRATLNNKIRQLEEDLAVA 1375
Query: 626 VEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEVDKALRAL 685
VEA + + + + +++ LA L E + +E + +++ +K L A
Sbjct: 1376 VEARDDALDAQEKIEKEVKEVKSLLAEARKKLDEEN------REVMEELRKKKEKELSAE 1429
Query: 686 ENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGRMRQIVGKFK 738
+ A AE+ AE AI+E +EL D+V R++ K +
Sbjct: 1430 KERADMAEQARDKAERAKKK------AIQEAEDVQKELTDVVAATREMERKMR 1476
>sp|P25386|USO1_YEAST INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO1 >gi|4778|emb|CAA38253.1|
(X54378) Uso1 protein [Saccharomyces cerevisiae]
Length = 1790
Score = 73.0 bits (176), Expect = 1e-11
Identities = 76/411 (18%), Positives = 177/411 (42%), Gaps = 41/411 (9%)
Query: 338 EKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLER 397
EKL+ A A E + ++SE K R+E+ A + A++ + +L L K L+
Sbjct: 1061 EKLETATTANDEN-VNKISELTKT-----REELEAELAAYKNLKNELETKLETSEKALKE 1114
Query: 398 LAEGDLS-NGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKD 456
+ E + +++ E + + + S+ ++A L+K +A +
Sbjct: 1115 VKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQ 1174
Query: 457 VTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSI 516
E I+Q+N+ I E + ++ +E+ ++ + TSEE + A+ +
Sbjct: 1175 YNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKE 1234
Query: 517 ANEGSQKGDEAL-----------KRIEDIQHMMSRIEETVSKVAEMSRNIE-------EI 558
+ ++ + +L +I+++Q + E+ VS++ + + E E+
Sbjct: 1235 LKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYLEL 1294
Query: 559 TNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKI 618
I E+ + I+ + + E+ +L + S + N + ++K+
Sbjct: 1295 QKESEKIKEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKL 1354
Query: 619 TDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEV 678
+EI+ +A ++ ++ E S +T+ QE SE++ T++++++R Q E
Sbjct: 1355 KNEIQIKNQAFEKERKLLNEGS-------------STITQEYSEKINTLEDELIRLQNEN 1401
Query: 679 DKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGR 729
+ + ++N + E+ + S +E+ +E++ I+ L+ KD + R
Sbjct: 1402 ELKAKEIDNTRSELEKVSLSNDEL---LEEKQNTIKSLQDEILSYKDKITR 1449
>gi|6320145 Integrin analogue gene; Uso1p [Saccharomyces cerevisiae]
>gi|2133190|pir||S67593 transport protein USO1 - yeast
(Saccharomyces cerevisiae) >gi|1431059|emb|CAA98621.1|
(Z74106) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1790
Score = 73.0 bits (176), Expect = 1e-11
Identities = 76/411 (18%), Positives = 177/411 (42%), Gaps = 41/411 (9%)
Query: 338 EKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLER 397
EKL+ A A E + ++SE K R+E+ A + A++ + +L L K L+
Sbjct: 1061 EKLETATTANDEN-VNKISELTKT-----REELEAELAAYKNLKNELETKLETSEKALKE 1114
Query: 398 LAEGDLS-NGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKD 456
+ E + +++ E + + + S+ ++A L+K +A +
Sbjct: 1115 VKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQ 1174
Query: 457 VTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSI 516
E I+Q+N+ I E + ++ +E+ ++ + TSEE + A+ +
Sbjct: 1175 YNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKE 1234
Query: 517 ANEGSQKGDEAL-----------KRIEDIQHMMSRIEETVSKVAEMSRNIE-------EI 558
+ ++ + +L +I+++Q + E+ VS++ + + E E+
Sbjct: 1235 LKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYLEL 1294
Query: 559 TNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKI 618
I E+ + I+ + + E+ +L + S + N + ++K+
Sbjct: 1295 QKESEKIKEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKL 1354
Query: 619 TDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEV 678
+EI+ +A ++ ++ E S +T+ QE SE++ T++++++R Q E
Sbjct: 1355 KNEIQIKNQAFEKERKLLNEGS-------------STITQEYSEKINTLEDELIRLQNEN 1401
Query: 679 DKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGR 729
+ + ++N + E+ + S +E+ +E++ I+ L+ KD + R
Sbjct: 1402 ELKAKEIDNTRSELEKVSLSNDEL---LEEKQNTIKSLQDEILSYKDKITR 1449
>emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1268
Score = 73.0 bits (176), Expect = 1e-11
Identities = 76/411 (18%), Positives = 177/411 (42%), Gaps = 41/411 (9%)
Query: 338 EKLKYAAQALAEGRLKQVSEYLKQIRYLERDEIGALIQAFEAVSKDLVGTLNAISKKLER 397
EKL+ A A E + ++SE K R+E+ A + A++ + +L L K L+
Sbjct: 539 EKLETATTANDEN-VNKISELTKT-----REELEAELAAYKNLKNELETKLETSEKALKE 592
Query: 398 LAEGDLS-NGLTVEVRGELRDIIEDIRSVTETFRESIGSLVEMANDLEKRANALAQVSKD 456
+ E + +++ E + + + S+ ++A L+K +A +
Sbjct: 593 VKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQ 652
Query: 457 VTEAINQVNEAIQQVSIEAQRQQETINEITDGMRLVAQTSEESVRAMEEFSGAVTEVVSI 516
E I+Q+N+ I E + ++ +E+ ++ + TSEE + A+ +
Sbjct: 653 YNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKE 712
Query: 517 ANEGSQKGDEAL-----------KRIEDIQHMMSRIEETVSKVAEMSRNIE-------EI 558
+ ++ + +L +I+++Q + E+ VS++ + + E E+
Sbjct: 713 LKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYLEL 772
Query: 559 TNVITSIAEQTNLLALNAAIEAARAGEAGRGFAVVAQEIRKLAEESKQAADNIKSIIDKI 618
I E+ + I+ + + E+ +L + S + N + ++K+
Sbjct: 773 QKESEKIKEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKL 832
Query: 619 TDEIKEAVEATKEGVSVIGESSETLRDTIGYLANIATLLQETSERMTTVKEQIVRTQEEV 678
+EI+ +A ++ ++ E S +T+ QE SE++ T++++++R Q E
Sbjct: 833 KNEIQIKNQAFEKERKLLNEGS-------------STITQEYSEKINTLEDELIRLQNEN 879
Query: 679 DKALRALENLAASAEETTASAEEVSSAIEQQTAAIEELRRAAQELKDMVGR 729
+ + ++N + E+ + S +E+ +E++ I+ L+ KD + R
Sbjct: 880 ELKAKEIDNTRSELEKVSLSNDEL---LEEKQNTIKSLQDEILSYKDKITR 927
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.314 0.132 0.344
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222963543
Number of Sequences: 2977
Number of extensions: 8948451
Number of successful extensions: 50927
Number of sequences better than 1.0e-10: 288
Number of HSP's better than 0.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 47468
Number of HSP's gapped (non-prelim): 919
length of query: 739
length of database: 189,106,746
effective HSP length: 67
effective length of query: 672
effective length of database: 149,008,117
effective search space: 100133454624
effective search space used: 100133454624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 168 (69.9 bits)