BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1337 (PAB1337) DE:Hypothetical protein
         (251 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75001 hypothetical protein PAB1337 - Pyrococcus abyssi (st...   481  e-135
pir||H71161 hypothetical protein PH0493 - Pyrococcus horikoshii ...   362  2e-99

>pir||G75001 hypothetical protein PAB1337 - Pyrococcus abyssi (strain Orsay)
           >gi|5458967|emb|CAB50453.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 251
           
 Score =  481 bits (1225), Expect = e-135
 Identities = 251/251 (100%), Positives = 251/251 (100%)

Query: 1   MDVGTLILIAVVVLIGSIVSAWIVSSVISQQMKNMQALMISRSLEVETKTVEKKRKGTRG 60
           MDVGTLILIAVVVLIGSIVSAWIVSSVISQQMKNMQALMISRSLEVETKTVEKKRKGTRG
Sbjct: 1   MDVGTLILIAVVVLIGSIVSAWIVSSVISQQMKNMQALMISRSLEVETKTVEKKRKGTRG 60

Query: 61  SEAKPEEVAKQEVRDVSEEDIVRKIKQIIDEKVHNVANEAKKKKERLLMLLDVARGYALG 120
           SEAKPEEVAKQEVRDVSEEDIVRKIKQIIDEKVHNVANEAKKKKERLLMLLDVARGYALG
Sbjct: 61  SEAKPEEVAKQEVRDVSEEDIVRKIKQIIDEKVHNVANEAKKKKERLLMLLDVARGYALG 120

Query: 121 FVSEDEYNAFLMRVLSELDEFKRLWLAAYPFPEDKDRLNQMLTHVARTKLPIEVREKGKG 180
           FVSEDEYNAFLMRVLSELDEFKRLWLAAYPFPEDKDRLNQMLTHVARTKLPIEVREKGKG
Sbjct: 121 FVSEDEYNAFLMRVLSELDEFKRLWLAAYPFPEDKDRLNQMLTHVARTKLPIEVREKGKG 180

Query: 181 KEGSVKLSPDEALIRITSSIKSAISILDDLIKKRGDNPAVTPLEIKLSQELEKCKKKVED 240
           KEGSVKLSPDEALIRITSSIKSAISILDDLIKKRGDNPAVTPLEIKLSQELEKCKKKVED
Sbjct: 181 KEGSVKLSPDEALIRITSSIKSAISILDDLIKKRGDNPAVTPLEIKLSQELEKCKKKVED 240

Query: 241 LEKRLQELEAL 251
           LEKRLQELEAL
Sbjct: 241 LEKRLQELEAL 251


>pir||H71161 hypothetical protein PH0493 - Pyrococcus horikoshii
           >gi|3256898|dbj|BAA29581.1| (AP000002) 246aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 246
           
 Score =  362 bits (920), Expect = 2e-99
 Identities = 185/251 (73%), Positives = 222/251 (87%), Gaps = 5/251 (1%)

Query: 1   MDVGTLILIAVVVLIGSIVSAWIVSSVISQQMKNMQALMISRSLEVETKTVEKKRKGTRG 60
           MDV T+IL+ V V++GS+++AWIVSSV+SQQMK+MQAL++S+S+E E++ VE+KRK    
Sbjct: 1   MDVWTVILVVVAVIVGSLIAAWIVSSVVSQQMKSMQALLLSKSIEAESR-VERKRKEVIA 59

Query: 61  SEAKPEEVAKQEVRDVSEEDIVRKIKQIIDEKVHNVANEAKKKKERLLMLLDVARGYALG 120
            + K     K+E + +SEEDIV++IKQ+IDEKV NV NEAKKKKERLLMLLDVARGYALG
Sbjct: 60  EKQK--NPVKEETKAISEEDIVKRIKQVIDEKVQNVLNEAKKKKERLLMLLDVARGYALG 117

Query: 121 FVSEDEYNAFLMRVLSELDEFKRLWLAAYPFPEDKDRLNQMLTHVARTKLPIEVREKGKG 180
           FVSEDEYNAFLM+VL ELDEFKRLWLA YP PED+DRLNQ++ +VARTKLPIEVRE  KG
Sbjct: 118 FVSEDEYNAFLMKVLGELDEFKRLWLARYPSPEDRDRLNQIMAYVARTKLPIEVRE--KG 175

Query: 181 KEGSVKLSPDEALIRITSSIKSAISILDDLIKKRGDNPAVTPLEIKLSQELEKCKKKVED 240
           KEG+ +LSPDEALIR+TSSI +AISILDDLIKKRG+NPA+TPLEI+LSQE+EK +KKVED
Sbjct: 176 KEGTTRLSPDEALIRMTSSINNAISILDDLIKKRGENPAITPLEIQLSQEVEKLRKKVED 235

Query: 241 LEKRLQELEAL 251
           LEKRLQELEAL
Sbjct: 236 LEKRLQELEAL 246


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.314    0.132    0.347 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81044601
Number of Sequences: 2977
Number of extensions: 3213326
Number of successful extensions: 18834
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18830
Number of HSP's gapped (non-prelim): 2
length of query: 251
length of database: 189,106,746
effective HSP length: 63
effective length of query: 188
effective length of database: 151,402,065
effective search space: 28463588220
effective search space used: 28463588220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 164 (68.3 bits)