BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1338 (PAB1338) DE:Hypothetical protein
(340 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75001 hypothetical protein PAB1338 - Pyrococcus abyssi (st... 671 0.0
pir||A71162 hypothetical protein PH0494 - Pyrococcus horikoshii ... 627 e-179
gi|11498648 A. fulgidus predicted coding region AF1043 [Archaeog... 83 3e-15
pir||F64501 hypothetical protein MJ1615 - Methanococcus jannasch... 81 2e-14
>pir||F75001 hypothetical protein PAB1338 - Pyrococcus abyssi (strain Orsay)
>gi|5458966|emb|CAB50452.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 340
Score = 671 bits (1713), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MPIYEARVKVGISSSWVTSKVSWRDALAQLESDRIVVKYLRMGEVTGEDSFPFSALTDIG 60
MPIYEARVKVGISSSWVTSKVSWRDALAQLESDRIVVKYLRMGEVTGEDSFPFSALTDIG
Sbjct: 1 MPIYEARVKVGISSSWVTSKVSWRDALAQLESDRIVVKYLRMGEVTGEDSFPFSALTDIG 60
Query: 61 IRIPDELKLNPEKDHFGLKFYVPGRGELLVIFTIEENLLIYDEKKFAEFVHKVFEVLING 120
IRIPDELKLNPEKDHFGLKFYVPGRGELLVIFTIEENLLIYDEKKFAEFVHKVFEVLING
Sbjct: 61 IRIPDELKLNPEKDHFGLKFYVPGRGELLVIFTIEENLLIYDEKKFAEFVHKVFEVLING 120
Query: 121 KTVMLQLARIVGGAINMESKWEEGWLRVIKVKSARTQRTERSVVVITQDKRPVSIFSDLE 180
KTVMLQLARIVGGAINMESKWEEGWLRVIKVKSARTQRTERSVVVITQDKRPVSIFSDLE
Sbjct: 121 KTVMLQLARIVGGAINMESKWEEGWLRVIKVKSARTQRTERSVVVITQDKRPVSIFSDLE 180
Query: 181 DIEIEEVEMNGKKVRAWKIRHFHINQSVTSYLYIPDKKVQLFVLRYLLKYTPSAMEFIIK 240
DIEIEEVEMNGKKVRAWKIRHFHINQSVTSYLYIPDKKVQLFVLRYLLKYTPSAMEFIIK
Sbjct: 181 DIEIEEVEMNGKKVRAWKIRHFHINQSVTSYLYIPDKKVQLFVLRYLLKYTPSAMEFIIK 240
Query: 241 IADDFPTLKSEFQELMEKELKELESLDEMEKQILVALYSGINPLELHQFLGITEKEIEEI 300
IADDFPTLKSEFQELMEKELKELESLDEMEKQILVALYSGINPLELHQFLGITEKEIEEI
Sbjct: 241 IADDFPTLKSEFQELMEKELKELESLDEMEKQILVALYSGINPLELHQFLGITEKEIEEI 300
Query: 301 YDRMIDKGLLKIVMIRKIVDLTNEGRKIVNKLLKYGLVSM 340
YDRMIDKGLLKIVMIRKIVDLTNEGRKIVNKLLKYGLVSM
Sbjct: 301 YDRMIDKGLLKIVMIRKIVDLTNEGRKIVNKLLKYGLVSM 340
>pir||A71162 hypothetical protein PH0494 - Pyrococcus horikoshii
>gi|3256899|dbj|BAA29582.1| (AP000002) 341aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 341
Score = 627 bits (1600), Expect = e-179
Identities = 306/341 (89%), Positives = 334/341 (97%), Gaps = 1/341 (0%)
Query: 1 MPIYEARVKVGISSSWVTS-KVSWRDALAQLESDRIVVKYLRMGEVTGEDSFPFSALTDI 59
MPI+EARVKVGISSSWVTS KVSWRDA+AQ+ESDRIVVKYL+MGEV GEDSFPFSAL D+
Sbjct: 1 MPIFEARVKVGISSSWVTSRKVSWRDAIAQIESDRIVVKYLKMGEVVGEDSFPFSALIDL 60
Query: 60 GIRIPDELKLNPEKDHFGLKFYVPGRGELLVIFTIEENLLIYDEKKFAEFVHKVFEVLIN 119
G+RIPDELKLNPEKDHFG+KFY+PGRGELLVIFTIEENLLIYDEKKF+EFVHKVFEVLIN
Sbjct: 61 GVRIPDELKLNPEKDHFGIKFYIPGRGELLVIFTIEENLLIYDEKKFSEFVHKVFEVLIN 120
Query: 120 GKTVMLQLARIVGGAINMESKWEEGWLRVIKVKSARTQRTERSVVVITQDKRPVSIFSDL 179
GKTVMLQLARI+GGA+NMESKWEEGWLRVIKVKSARTQ+TERS+VVI +DKRPVSIFSDL
Sbjct: 121 GKTVMLQLARIIGGAVNMESKWEEGWLRVIKVKSARTQKTERSIVVIIKDKRPVSIFSDL 180
Query: 180 EDIEIEEVEMNGKKVRAWKIRHFHINQSVTSYLYIPDKKVQLFVLRYLLKYTPSAMEFII 239
EDIEIEEV+MNGK+VRAWKIRHFHI+QSVTSYLYIPDK+ QL+VLRYLLKY P+ MEFI+
Sbjct: 181 EDIEIEEVDMNGKRVRAWKIRHFHIDQSVTSYLYIPDKQTQLYVLRYLLKYNPAIMEFIM 240
Query: 240 KIADDFPTLKSEFQELMEKELKELESLDEMEKQILVALYSGINPLELHQFLGITEKEIEE 299
K++DDFPTLKSEFQE+MEKE+KELE+LDEMEKQILVALYSGINPLELHQFLG++EKEIEE
Sbjct: 241 KVSDDFPTLKSEFQEIMEKEIKELEALDEMEKQILVALYSGINPLELHQFLGVSEKEIEE 300
Query: 300 IYDRMIDKGLLKIVMIRKIVDLTNEGRKIVNKLLKYGLVSM 340
IYDRMIDKGLLKIVMIRKIVDLTNEGRKIVNKLLKYGLVSM
Sbjct: 301 IYDRMIDKGLLKIVMIRKIVDLTNEGRKIVNKLLKYGLVSM 341
>gi|11498648 A. fulgidus predicted coding region AF1043 [Archaeoglobus fulgidus]
>gi|7483532|pir||C69380 hypothetical protein AF1043 -
Archaeoglobus fulgidus >gi|2649558|gb|AAB90208.1|
(AE001031) A. fulgidus predicted coding region AF1043
[Archaeoglobus fulgidus]
Length = 269
Score = 83.5 bits (203), Expect = 3e-15
Identities = 52/204 (25%), Positives = 103/204 (50%), Gaps = 39/204 (19%)
Query: 132 GGAINMESKWEEGWLRVIKVKSARTQRTERSVVVITQDKRPVSIFSDLEDIEIEEVEMNG 191
GG + +SKWE+G+L + T+ ++ ++ K+ +L +E +++ G
Sbjct: 100 GGVVVSDSKWEKGYLSI----------TDEALWFLSSSKQIRISIQNLGSVE-KDIRTVG 148
Query: 192 KKVRA-WKIRHFHINQSVTSYLYIPDKKVQLFVLRYLLKYTPSAMEFIIKIADDFPTLKS 250
KK R + H + +TS++ P+ + + L+
Sbjct: 149 KKQRVVLVVTHVENGEVITSFVLCPETTMDM--------------------------LQE 182
Query: 251 EFQELMEKELKELESLDEMEKQILVALYSGINPLELHQFLGITEKEIEEIYDRMIDKGLL 310
Q +EK K E L E+E+QIL +Y+G++ + + LG+T +E+ ++YDR+++ GL
Sbjct: 183 YIQNFIEKS-KPKEKLSEVEEQILTMVYTGVDSVSVESILGVTTEELNKMYDRLVNLGLA 241
Query: 311 KIVMIRKIVDLTNEGRKIVNKLLK 334
++V IRK ++LT G +V++++K
Sbjct: 242 RVVKIRKEIELTPRGVALVSEIMK 265
>pir||F64501 hypothetical protein MJ1615 - Methanococcus jannaschii
>gi|1500513|gb|AAB99637.1| (U67601) M. jannaschii
predicted coding region MJ1615 [Methanococcus
jannaschii]
Length = 255
Score = 80.8 bits (196), Expect = 2e-14
Identities = 65/220 (29%), Positives = 108/220 (48%), Gaps = 23/220 (10%)
Query: 21 VSWRDALAQLESDRIVVKYL-RMGEVTGEDSFPFSALTDIGIRIP----DELKLNPEKDH 75
+ W L D+IV +++ + EV ED + D+G +P D K E
Sbjct: 28 LKWEKLEIILYKDKIVFEFVDKTIEVGVED------IEDVGAELPKKVIDIAKSTLEDIT 81
Query: 76 FGLKFYVPGR--GELLVIFTIEENLLIYDEKKFAEFVHKVFEVLINGKTVMLQLARIVGG 133
+ + + G ++V F E + IY + F+ K+F +L+N K V + G
Sbjct: 82 YHSSIIIKSKEFGNVMVGFAPETS--IYGKAPIDNFLRKLFYILLNKKEVKILYN---AG 136
Query: 134 AINMESKWEEGWLRVIK--VKSARTQRTERSVVVI---TQDKRPVSIFSDLEDIEIEEVE 188
+ +KWE G+L IK +K + E +VV +D + IFS+++D+EIEE +
Sbjct: 137 ENSENTKWENGFLTFIKKRIKDGLVTKIEYRLVVEILDNEDSKIYDIFSNIKDVEIEEKD 196
Query: 189 MNGKKVRAWKIRHFHINQSVTSYLYIPDKKVQLFVLRYLL 228
++G+ KI + + SYLY DKKV+LF+LRY++
Sbjct: 197 VDGEIEPVLKILQVKDGKDIISYLYTKDKKVRLFILRYMV 236
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.139 0.391
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118858384
Number of Sequences: 2977
Number of extensions: 4887264
Number of successful extensions: 15511
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15504
Number of HSP's gapped (non-prelim): 4
length of query: 340
length of database: 189,106,746
effective HSP length: 57
effective length of query: 283
effective length of database: 154,992,987
effective search space: 43863015321
effective search space used: 43863015321
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)