BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1339 1505522 1505196 -109 !not a gene!
         (109 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71162 hypothetical protein PH0496 - Pyrococcus horikoshii ...    98  3e-20

>pir||C71162 hypothetical protein PH0496 - Pyrococcus horikoshii
           >gi|3256901|dbj|BAA29584.1| (AP000002) 154aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 154
           
 Score = 97.9 bits (240), Expect = 3e-20
 Identities = 57/107 (53%), Positives = 62/107 (57%)

Query: 2   SIPFLLSFSYVSPSTIXXXXXXXXXXXXXXXXTRIAFNPFIFLVALKANSWLGXXXXXXX 61
           SIPF LSF YV PSTI                T  A    IFLVAL A SWLG       
Sbjct: 40  SIPFSLSFLYVVPSTIPPAASVGPSVPSVSKATIRASRSEIFLVALSAISWLGPPFPPLP 99

Query: 62  XXXXXXXXXNTRTTGGSKGLPVLAISWTMEPMNSPASLASPSRVVVI 108
                    NTRTTGGS GLP+ AISWT++PMN+PASLASPS+VVVI
Sbjct: 100 SIVTVVSPPNTRTTGGSNGLPLSAISWTIDPMNNPASLASPSKVVVI 146


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.132    0.394 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28969671
Number of Sequences: 2977
Number of extensions: 692364
Number of successful extensions: 1170
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1167
Number of HSP's gapped (non-prelim): 1
length of query: 109
length of database: 189,106,746
effective HSP length: 52
effective length of query: 57
effective length of database: 157,985,422
effective search space: 9005169054
effective search space used: 9005169054
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 159 (66.3 bits)