BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1340 1504997 1504629 -123 !not a gene!
         (123 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71162 hypothetical protein PH0497 - Pyrococcus horikoshii ...   132  1e-30

>pir||D71162 hypothetical protein PH0497 - Pyrococcus horikoshii
           >gi|3256902|dbj|BAA29585.1| (AP000002) 126aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 126
           
 Score =  132 bits (330), Expect = 1e-30
 Identities = 68/112 (60%), Positives = 78/112 (68%)

Query: 12  VGPEAIASKLSPTTSEIIRTIPVPLIFFANFPPLTFDMCFLTVFISCILAPLLRSNSFVX 71
           +GPEA+AS+LSPTTSEII TIPVPLI FA+ PPLTFD+CFLTVFISCI APL R  S V 
Sbjct: 1   MGPEAMASRLSPTTSEIISTIPVPLIIFASLPPLTFDICFLTVFISCIFAPLFRRRSVVS 60

Query: 72  XXXXXXXXXXXXXXXAEPPPEISTKTISSSLTFSSNLRPSIAPLIEFSSGIG 123
                          AEPPPEI  KT+S SL   +  R S+AP ++FSSGIG
Sbjct: 61  LRSSREIPSSGSSNSAEPPPEIRMKTMSFSLALFNIDRASLAPNMDFSSGIG 112


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.136    0.403 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40479320
Number of Sequences: 2977
Number of extensions: 1239524
Number of successful extensions: 2709
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2708
Number of HSP's gapped (non-prelim): 1
length of query: 123
length of database: 189,106,746
effective HSP length: 52
effective length of query: 71
effective length of database: 157,985,422
effective search space: 11216964962
effective search space used: 11216964962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)