BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1341 (PAB1341) DE:Hypothetical protein
(267 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75001 hypothetical protein PAB1341 - Pyrococcus abyssi (st... 559 e-158
pir||F71162 hypothetical protein PH0499 - Pyrococcus horikoshii ... 470 e-132
sp|P42981|YPJG_BACSU HYPOTHETICAL 24.8 KD PROTEIN IN DAPB-PAPS I... 99 5e-20
dbj|BAB05401.1| (AP001512) unknown conserved protein [Bacillus h... 92 7e-18
gb|AAC14880.1| (AF060080) hypothetical protein [Chlorobium tepidum] 86 4e-16
emb|CAB66204.1| (AL136502) hypothetical protein SCF43.15c. [Stre... 83 3e-15
gb|AAK43010.1| Conserved hypothetical protein [Sulfolobus solfat... 82 6e-15
dbj|BAB07039.1| (AP001518) unknown conserved protein [Bacillus h... 80 2e-14
emb|CAB67717.1| (AJ271405) hypothetical protein [Streptomyces ro... 76 3e-13
emb|CAA77139.1| (Y18353) hypothetical protein [Thermus thermophi... 68 9e-11
>pir||C75001 hypothetical protein PAB1341 - Pyrococcus abyssi (strain Orsay)
>gi|5458963|emb|CAB50449.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 267
Score = 559 bits (1424), Expect = e-158
Identities = 267/267 (100%), Positives = 267/267 (100%)
Query: 1 MFENLESFEEAFKKLLEEVLEFDLNDPFKDVEKVLCIEPHPDDCVIGMGGTIKKLTERGI 60
MFENLESFEEAFKKLLEEVLEFDLNDPFKDVEKVLCIEPHPDDCVIGMGGTIKKLTERGI
Sbjct: 1 MFENLESFEEAFKKLLEEVLEFDLNDPFKDVEKVLCIEPHPDDCVIGMGGTIKKLTERGI 60
Query: 61 EVIYACMTDGYMGTLDSSLTGHELATIRRREEEESSKLLGVKKIYWLNYRDTELPYSREV 120
EVIYACMTDGYMGTLDSSLTGHELATIRRREEEESSKLLGVKKIYWLNYRDTELPYSREV
Sbjct: 61 EVIYACMTDGYMGTLDSSLTGHELATIRRREEEESSKLLGVKKIYWLNYRDTELPYSREV 120
Query: 121 RKDLVRIIRKEKPDGVFLPDPWLPYEAHPDHRNTGFLALDAVAFSPLPNFSNVDVEIGLG 180
RKDLVRIIRKEKPDGVFLPDPWLPYEAHPDHRNTGFLALDAVAFSPLPNFSNVDVEIGLG
Sbjct: 121 RKDLVRIIRKEKPDGVFLPDPWLPYEAHPDHRNTGFLALDAVAFSPLPNFSNVDVEIGLG 180
Query: 181 PHQVSFIALYYTNKPNYFVDITDVMELKLKAIRTHKSQFPDDVWEVWEPFLRTVALFYGK 240
PHQVSFIALYYTNKPNYFVDITDVMELKLKAIRTHKSQFPDDVWEVWEPFLRTVALFYGK
Sbjct: 181 PHQVSFIALYYTNKPNYFVDITDVMELKLKAIRTHKSQFPDDVWEVWEPFLRTVALFYGK 240
Query: 241 KAGVKYAEGFRIMPGLFYHITPFADLI 267
KAGVKYAEGFRIMPGLFYHITPFADLI
Sbjct: 241 KAGVKYAEGFRIMPGLFYHITPFADLI 267
>pir||F71162 hypothetical protein PH0499 - Pyrococcus horikoshii
>gi|3256904|dbj|BAA29587.1| (AP000002) 272aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 272
Score = 470 bits (1196), Expect = e-132
Identities = 213/268 (79%), Positives = 244/268 (90%), Gaps = 1/268 (0%)
Query: 1 MFENLESFEEAFKKLLEEVLEFDLNDPFKDVEKVLCIEPHPDDCVIGMGGTIKKLTERGI 60
MFE++++FEEAF KLL EVLEFDL +PFKD +KVLCIEPHPDDCVIGMGGTIKKL++ G+
Sbjct: 5 MFEDIDTFEEAFNKLLREVLEFDLQNPFKDAKKVLCIEPHPDDCVIGMGGTIKKLSDMGV 64
Query: 61 EVIYACMTDGYMGTLDSSLTGHELATIRRREEEESSKLLGVKKIYWLNYRDTELPYSREV 120
EVIY CMTDGYMGT D SL+GHELA IRR+EEEES++LLGVKKIYWLNYRDTELPYSREV
Sbjct: 65 EVIYVCMTDGYMGTTDESLSGHELAAIRRKEEEESARLLGVKKIYWLNYRDTELPYSREV 124
Query: 121 RKDLVRIIRKEKPDGVFLPDPWLPYEAHPDHRNTGFLALDAVAFSPLPNFSNVDVEIGLG 180
RKDL +I+RKE+PDGVF PDPWLPYE+HPDHR TGFLA+++VAFS LPNFSN D++IGL
Sbjct: 125 RKDLTKILRKEQPDGVFAPDPWLPYESHPDHRRTGFLAIESVAFSQLPNFSNTDLDIGLN 184
Query: 181 PHQV-SFIALYYTNKPNYFVDITDVMELKLKAIRTHKSQFPDDVWEVWEPFLRTVALFYG 239
P+ SFIALYYT+KPNY VDITD+MELKLKAIR H+SQFPDD+WE WEPFLRT+A+FYG
Sbjct: 185 PYNSGSFIALYYTHKPNYIVDITDLMELKLKAIRVHRSQFPDDIWEKWEPFLRTIAMFYG 244
Query: 240 KKAGVKYAEGFRIMPGLFYHITPFADLI 267
+K GV+Y EGFRIMPGLFYHITPF DLI
Sbjct: 245 EKIGVRYGEGFRIMPGLFYHITPFTDLI 272
>sp|P42981|YPJG_BACSU HYPOTHETICAL 24.8 KD PROTEIN IN DAPB-PAPS INTERGENIC REGION
>gi|7474677|pir||F69937 conserved hypothetical protein
ypjG - Bacillus subtilis >gi|755605|gb|AAA92876.1|
(L38424) unknown [Bacillus subtilis]
>gi|1146236|gb|AAB38444.1| (L47709) putative [Bacillus
subtilis] >gi|2634665|emb|CAB14163.1| (Z99115) alternate
gene name: jojG~similar to hypothetical proteins
[Bacillus subtilis]
Length = 224
Score = 99.1 bits (243), Expect = 5e-20
Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 23/225 (10%)
Query: 34 VLCIEPHPDDCVIGMGGTIKKLTERGIEVIYACMTDGYMGTLDSSLTGHELATIRRREEE 93
VL H DD IGMGGTI K ++ +V+ +T+ + L+ + ++R+ E
Sbjct: 6 VLAFGAHSDDVEIGMGGTIAKFVKQEKKVMICDLTE-------AELSSNGTVSLRKEEAA 58
Query: 94 ESSKLLGVKKIYWLNYRDTELPYSREVRKDLVRIIRKEKPDGVFLPDPWLPYEAHPDHRN 153
E++++LG K L D L S + + +V +IR +P VF+P + HPDH N
Sbjct: 59 EAARILGADKRIQLTLPDRGLIMSDQAIRSIVTVIRICRPKAVFMP---YKKDRHPDHGN 115
Query: 154 TGFLALDAVAFSPLPNFSNVDVEIGLGPHQVSFIALYYTN---KPNYFVDITDVMELKLK 210
L +A+ + + + + E L H+VS + Y N +P++ +DI+D +E K +
Sbjct: 116 AAALVEEAIFSAGIHKYKD---EKSLPAHKVSKVYYYMINGFHQPDFVIDISDTIEAKKQ 172
Query: 211 AIRTHKSQFPDDVWEVWEP-------FLRTVALFYGKKAGVKYAE 248
++ +KSQF V P + YGK+AGV+YAE
Sbjct: 173 SLNAYKSQFIPSKDSVSTPLTNGYIEIVEAREKLYGKEAGVEYAE 217
>dbj|BAB05401.1| (AP001512) unknown conserved protein [Bacillus halodurans]
Length = 231
Score = 92.1 bits (225), Expect = 7e-18
Identities = 70/231 (30%), Positives = 111/231 (47%), Gaps = 28/231 (12%)
Query: 34 VLCIEPHPDDCVIGMGGTIKKLTERGIEVIYACMTDGYMGTLDSSLTGHELATIRRREEE 93
+L HPDD IGMG T+ ++G V G + L+ + R++E
Sbjct: 6 ILAFGAHPDDVEIGMGATLYHYRQKGHRV-------GICNLTKAELSSNGTVEQRQKEAA 58
Query: 94 ESSKLLGVKKIYWLNYRDTEL--PYSREVRKDLVRIIRKEKPDGVFLPDPWLPYEAHPDH 151
++S++LG+ + L+ D L P ++VR ++V +IR +P VF+P P + HPDH
Sbjct: 59 DASRILGIDERIQLDLPDRGLRNPSEQQVR-NIVSVIRHCQPTFVFVP---YPVDRHPDH 114
Query: 152 RNTGFLALDAVAFSPLPNFSNVDVEIGLGPHQVSFIALYYTN---KPNYFVDITDVMELK 208
+ L +AV + + N+ G H V + Y N +P+ VD++ E+K
Sbjct: 115 GHCAELVKEAVFNARIRNYKAEG-----GAHHVQDLFYYMINSFERPDLLVDVSHCYEVK 169
Query: 209 LKAIRTHKSQFPDDVWEVWEP----FLRTVAL---FYGKKAGVKYAEGFRI 252
A+ +KSQF V P +L V YGK+AG YAEGF++
Sbjct: 170 QAALNAYKSQFTKSKASVDTPLTNGYLEAVEARERLYGKEAGAMYAEGFKL 220
>gb|AAC14880.1| (AF060080) hypothetical protein [Chlorobium tepidum]
Length = 240
Score = 86.2 bits (210), Expect = 4e-16
Identities = 69/236 (29%), Positives = 105/236 (44%), Gaps = 25/236 (10%)
Query: 35 LCIEPHPDDCVIGMGGTIKKLTERGIEVIYACMTDGYMGTLDSSLTGHELATIRRREEEE 94
L HPDD + G T+ K+ + G V +T G MGTL ++ T RR+E
Sbjct: 13 LAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAET-------RRQEAAL 65
Query: 95 SSKLLGVKKIYWLNYRDTELPYSREVRKDLVRIIRKEKPDGVFLPDPWLPYEAHPDHRNT 154
+++ +G L+ D+EL Y++E ++RIIRK +PD VF P E HPDH
Sbjct: 66 ATERMGYVAREQLDLGDSELFYTKESLHKIIRIIRKYRPDTVFCNP---PDERHPDHMKA 122
Query: 155 GFLALDAVAFSPLPNFSNVDVEIGLGPHQVSFIALYYTN----KPNYFVDITDVMELKLK 210
L +A ++ L D + H+ + LYY +P VD++ E
Sbjct: 123 SRLIYEACYYAGLRKIETFDGGLPQAAHRPRHL-LYYIQFKQLEPQIVVDVSSTFERSRA 181
Query: 211 AIRTHKSQF------PDDVWEV----WEPFLRTVALFYGKKAGVKYAEGFRIMPGL 256
I +QF + V + + P L + G++ GV Y EGFR+ L
Sbjct: 182 GIEAFGTQFHRKENSDEPVTMINRKEFLPGLEARSRALGEQIGVMYGEGFRLPTAL 237
>emb|CAB66204.1| (AL136502) hypothetical protein SCF43.15c. [Streptomyces coelicolor
A3(2)]
Length = 247
Score = 83.5 bits (203), Expect = 3e-15
Identities = 62/222 (27%), Positives = 105/222 (46%), Gaps = 7/222 (3%)
Query: 30 DVEKVLCIEPHPDDCVIGMGGTIKKLTERGIEVIYACMTDGYMGTLDSSLTGHELATIRR 89
D + L + HPDD G I T+ G EV Y T G G +L E A +R
Sbjct: 15 DWRRALAVVAHPDDLEYGCAAAIAAWTDEGREVAYVLATRGEAGI--DTLAPAECAPLRE 72
Query: 90 REEEESSKLLGVKKIYWLNYRDTELPYSREVRKDLVRIIRKEKPDGVFL---PDPWLPYE 146
RE+ S+ ++GV ++ +L++RD + Y +R+D+ IR+ +P+ V D W
Sbjct: 73 REQRASAAVVGVSEVEFLDHRDGVVEYGTALRRDIAAAIRRHRPELVITMNHRDTWGGVA 132
Query: 147 AH-PDHRNTGFLALDAVAFSPLPNFSNVDVEIGLGP-HQVSFIALYYTNKPNYFVDITDV 204
+ PDH G LDA A + + GL P + V ++A+ ++ P + VD T
Sbjct: 133 WNTPDHVAVGRATLDAAADAGNRWIFPELTDRGLEPWNGVRWVAVAGSSSPTHAVDATPG 192
Query: 205 MELKLKAIRTHKSQFPDDVWEVWEPFLRTVALFYGKKAGVKY 246
ME ++++ H++ E E ++R + + AG ++
Sbjct: 193 MERAVRSLLEHRTYIEVLTEEDPETYVRGFLTGFAEAAGERF 234
>gb|AAK43010.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 193
Score = 82.3 bits (200), Expect = 6e-15
Identities = 45/126 (35%), Positives = 73/126 (57%), Gaps = 7/126 (5%)
Query: 31 VEKVLCIEPHPDDCVIGMGGTIKKLTERGIEVIYACMTDGYMGTLDSSLTG-HELATIRR 89
+ +VL + PHPDD + GGTI+ E+G ++ +TDG G+ D L G EL IRR
Sbjct: 7 MRRVLIVAPHPDDETLCCGGTIQIFKEKGYKISVIIVTDGRYGSPDDKLKGSSELIEIRR 66
Query: 90 REEEESSKLLGVKKIYWLNYRDTELPYSREVRKDLVRIIRKEKPDGVFLPDPWLPYEAHP 149
+E ++K+LG+ ++ +LN+ D+++ + L +R+ D VF P +P++ HP
Sbjct: 67 QEALRATKILGIDEVKFLNFEDSKVS-EEDAENALAEFLREN--DVVFSP---IPFDNHP 120
Query: 150 DHRNTG 155
DH N G
Sbjct: 121 DHANIG 126
>dbj|BAB07039.1| (AP001518) unknown conserved protein [Bacillus halodurans]
Length = 227
Score = 80.4 bits (195), Expect = 2e-14
Identities = 63/192 (32%), Positives = 89/192 (45%), Gaps = 17/192 (8%)
Query: 34 VLCIEPHPDDCVIGMGGTIKKLTERGIEVIYACMTDGYMGTLDSS---LTGHELATIRRR 90
VL I PHPDD G+ GTI ++G+ V YAC+T G MG + T L IR++
Sbjct: 7 VLVIFPHPDDEAFGVSGTIALFRKQGVPVTYACLTLGEMGRNLGNPPFATRESLPDIRKK 66
Query: 91 EEEESSKLLGVKKIYWLNYRDTELPYSREVR-KDLVRIIRKEKPDGVFLPDPWLPYEAHP 149
E +S++ +G++ + L YRD + + E + D+V + E + + + Y HP
Sbjct: 67 ELIKSAEAMGIEDLRMLGYRDKTIEFEDETKLTDMVSDLMAELNPSLIITF-YPGYSVHP 125
Query: 150 DHRNTGFLALDAV---AFSPLPNFSNVDVEIGLGPHQVSFIALYYTNKPNYFVDITDVME 206
DH TG + AV S P V G HQ P+ DI+ V E
Sbjct: 126 DHEATGRAVVRAVRRLEKSMRPKLYGVAFSNG---HQEEL------GDPDILFDISPVAE 176
Query: 207 LKLKAIRTHKSQ 218
K AIR H SQ
Sbjct: 177 QKKAAIRAHISQ 188
>emb|CAB67717.1| (AJ271405) hypothetical protein [Streptomyces rochei]
Length = 234
Score = 76.5 bits (185), Expect = 3e-13
Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 20/229 (8%)
Query: 31 VEKVLCIEPHPDDCVIGMGGTIKKLTERGIEVIYACMTDGYMGTLDSSLTGHELATIRRR 90
V VL + PHPDD VIG GG++ K G V + LD ++T E A
Sbjct: 4 VTDVLVVAPHPDDDVIGCGGSMAKHVREGARVTVVVVIGRERSALDDAVTEAEFAA---- 59
Query: 91 EEEESSKLLGVKKIYWLNYRDTELPYSREVRKDLVRIIRKEKPDGVFLPDPWLPYEAHPD 150
E E ++K+LGV + + + SR + DLVR++R+ +P V+LP + +
Sbjct: 60 ETENAAKILGVHRCVRFDESSRDFAPSRRIHLDLVRVLREVRPQVVYLPH---DNDDDVE 116
Query: 151 HRNTGFLALDAVAFSPLPNFSNVDVEIGLGPHQVSFIALYY-----TNKPNYFVDITDVM 205
HR L +A+ + F E G P + L Y + Y DI + +
Sbjct: 117 HRMVHRLTTEALWMAQSEFFQ----EAGECPMPAPRLVLGYEVWSPMARYQYAEDIGEHI 172
Query: 206 ELKLKAIRTHKSQFPDDVWEVWEPFLRTVALFYGK-KAGVKYAEGFRIM 253
K++A+R + SQ W+ +R +A + G AG AE F+++
Sbjct: 173 HTKVEAMRAYVSQLRH---AAWDEGIRGLARYRGAVSAGSGDAEVFQVL 218
>emb|CAA77139.1| (Y18353) hypothetical protein [Thermus thermophilus]
Length = 227
Score = 68.3 bits (164), Expect = 9e-11
Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 23/225 (10%)
Query: 34 VLCIEPHPDDCVIGMGGTIKKLTERGIEVIYACMTDGYMGTLDSSLTGHELATIRRREEE 93
+L + PHPDD +G GGT+ + G+ +T G MG S T E R +E
Sbjct: 4 LLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMG---SKGTPEE----REKEVA 56
Query: 94 ESSKLLGVKKIYWLNYRDTELPYSREVRKDLVRIIRKEKPDGVFLPDPWLPYEAHPDHRN 153
E+S++LG+ L + D L E R L + +R+ +P VF P L + HPDH
Sbjct: 57 EASRILGLDFRGNLGFPDGGLADVPEQRLKLAQALRRLRPRVVFAP---LEADRHPDHTA 113
Query: 154 TGFLALDAVAFSPLPNFSNVDVEIGLGPHQVSFIALYYTN---KPNYFVDITDVMELKLK 210
LA+ AV + L + P +V + Y N P++ V I+ ++
Sbjct: 114 ASRLAVAAVHLAGLRK-----APLEGEPFRVERLFFYPGNHPFAPSFLVKISAFIDQWEA 168
Query: 211 AIRTHKSQF-----PDDVWEVWEPFLRTVALFYGKKAGVKYAEGF 250
A+ ++SQF + V + + ++G GV YAE F
Sbjct: 169 AVLAYRSQFTGEAASETVGPKGVEARKAMRRYFGNYLGVDYAEPF 213
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.142 0.436
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110329229
Number of Sequences: 2977
Number of extensions: 4918523
Number of successful extensions: 12269
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 12246
Number of HSP's gapped (non-prelim): 10
length of query: 267
length of database: 189,106,746
effective HSP length: 51
effective length of query: 216
effective length of database: 158,583,909
effective search space: 34254124344
effective search space used: 34254124344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)