BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1343 (dppA-3) DE:DIPEPTIDE TRANSPORT PROTEIN PRECURSOR
(DIPEPTIDE-BINDING PROTEIN)
(633 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75069 dipeptide transport protein precursor (dip eptide-bi... 1321 0.0
pir||A71163 hypothetical protein PH0502 - Pyrococcus horikoshii ... 1106 0.0
pir||H75141 oligopeptide-binding protein appa precursor PAB0627 ... 453 e-126
pir||C72278 hypothetical protein TM1226 - Thermotoga maritima (s... 334 2e-90
pir||E72282 oligopeptide ABC transporter, periplasmic oligopepti... 331 2e-89
pir||A72429 oligopeptide ABC transporter, periplasmic oligopepti... 217 4e-55
pir||H82301 peptide ABC transporter, periplasmic peptide-binding... 149 8e-35
pir||B71130 probable oligopeptide binding protein APPA - Pyrococ... 139 7e-32
pir||G72420 oligopeptide ABC transporter, periplasmic oligopepti... 122 2e-26
pir||A72393 hypothetical protein TM0300 - Thermotoga maritima (s... 118 2e-25
pir||S62194 hypothetical protein 4 - Methanosarcina barkeri (fra... 108 2e-22
emb|CAC12450.1| (AL445067) dipeptide ABC transport system, perip... 108 3e-22
gb|AAB34223.1| (S75873) 60 kda antigen [Borrelia coriaceae] 106 6e-22
pir||A38447 oligopeptide ABC transport system substrate-binding ... 103 7e-21
sp|P42061|APPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN APPA PRECURSOR... 103 7e-21
gb|AAK43144.1| ABC transporter, binding protein [Sulfolobus solf... 102 9e-21
pir||C70425 transporter (extracellular solute binding protein fa... 102 9e-21
sp|P24141|OPPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN OPPA PRECURSOR... 101 2e-20
pir||C75202 dipeptide abc transporter, dipeptide-binding protein... 99 2e-19
pir||G70140 oligopeptide ABC transporter, periplasmic oligopepti... 95 2e-18
gb|AAC34990.1| (AF043071) oligopeptide permease periplasmic bind... 94 3e-18
gb|AAB97671.1| (AF005657) plasminogen binding protein [Borrelia ... 94 5e-18
pir||T44635 dipeptide transporter protein dppA [imported] - Baci... 93 1e-17
gb|AAC46282.1| (AF000366) oligopeptide permease homolog AI [Borr... 92 2e-17
pir||F71951 periplasmic dipeptide transport substrate-binding pr... 91 3e-17
sp|P23847|DPPA_ECOLI PERIPLASMIC DIPEPTIDE TRANSPORT PROTEIN PRE... 91 3e-17
pir||B64557 dipeptide ABC transporter, periplasmic dipeptide-bin... 91 4e-17
gb|AAC34992.1| (AF043071) oligopeptide permease periplasmic bind... 91 4e-17
emb|CAB96044.1| (AJ250012) surface antigen [Borrelia afzelii] 91 4e-17
pir||A70141 oligopeptide ABC transporter, periplasmic oligopepti... 90 5e-17
pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycy... 90 5e-17
pir||G69618 dipeptide ABC transporter (dipeptide-binding protein... 89 2e-16
sp|P26906|DPPE_BACSU DIPEPTIDE-BINDING PROTEIN DPPE PRECURSOR 89 2e-16
gb|AAC46284.1| (AF000366) oligopeptide permease homolog AIII [Bo... 89 2e-16
dbj|BAB07363.1| (AP001519) dipeptide ABC transporter (dipeptide-... 89 2e-16
pdb|1DPE| Dipeptide-Binding Protein 88 3e-16
emb|CAA40006.1| (X56678) dciAE [Bacillus subtilis] 87 8e-16
sp|P33590|NIKA_ECOLI NICKEL-BINDING PERIPLASMIC PROTEIN PRECURSO... 87 8e-16
gi|11497010 oligopeptide ABC transporter, periplasmic oligopepti... 86 1e-15
pir||B82242 oligopeptide ABC transporter, periplasmic oligopepti... 85 2e-15
gb|AAC46283.1| (AF000366) oligopeptide permease homolog AII [Bor... 85 2e-15
emb|CAB96045.1| (AJ250013) surface antigen [Borrelia garinii] 85 3e-15
pir||H83083 probable binding protein component of ABC transporte... 83 9e-15
pir||S16651 dciAE protein - Bacillus subtilis 83 9e-15
sp|P06202|OPPA_SALTY PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN PR... 82 1e-14
pdb|1JET|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complex... 82 2e-14
pdb|1B05|A Chain A, Structure Of Oligo-Peptide Binding Protein C... 82 2e-14
pir||S77182 oligopeptide transport system permease protein appA ... 82 3e-14
pir||B72289 oligopeptide ABC transporter, periplasmic oligopepti... 81 4e-14
gb|AAC46281.1| (AF000365) oligopeptide permease homolog AV [Borr... 80 6e-14
pir||F81253 probable peptide ABC-transport system periplasmic pe... 80 6e-14
gi|11496929 oligopeptide ABC transporter, periplasmic oligopepti... 80 8e-14
dbj|BAB04286.1| (AP001509) nickel transport system (nickel-bindi... 78 2e-13
gb|AAC67217.1| (U78968) surface lipoprotein DppA [Streptococcus ... 76 1e-12
pir||B83082 probable binding protein component of ABC transporte... 74 4e-12
gb|AAC69837.1| (AF076683) oligopeptide transporter putative subs... 74 6e-12
sp|P23843|OPPA_ECOLI PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN PR... 71 4e-11
pir||G83083 probable binding protein component of ABC transporte... 70 6e-11
>pir||A75069 dipeptide transport protein precursor (dip eptide-binding protein)
PAB1343 - Pyrococcus abyssi (strain Orsay)
>gi|5458959|emb|CAB50446.1| (AJ248287) DIPEPTIDE
TRANSPORT PROTEIN PRECURSOR (DIP EPTIDE-BINDING PROTEIN)
[Pyrococcus abyssi]
Length = 633
Score = 1321 bits (3380), Expect = 0.0
Identities = 633/633 (100%), Positives = 633/633 (100%)
Query: 1 MKKFLATLLIGLFFLSTIGIVSAAEELPREQTLYTANSSPPTNANPVYGSNIIPIAGLVF 60
MKKFLATLLIGLFFLSTIGIVSAAEELPREQTLYTANSSPPTNANPVYGSNIIPIAGLVF
Sbjct: 1 MKKFLATLLIGLFFLSTIGIVSAAEELPREQTLYTANSSPPTNANPVYGSNIIPIAGLVF 60
Query: 61 EPLFQLNFMKTELVPWLAEYGKWVSSNVFEVKLREGTKWQDGKPLTAEDVKFSFEYYEKV 120
EPLFQLNFMKTELVPWLAEYGKWVSSNVFEVKLREGTKWQDGKPLTAEDVKFSFEYYEKV
Sbjct: 61 EPLFQLNFMKTELVPWLAEYGKWVSSNVFEVKLREGTKWQDGKPLTAEDVKFSFEYYEKV 120
Query: 121 GLKNWSEYGLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKNIDPKNVKTM 180
GLKNWSEYGLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKNIDPKNVKTM
Sbjct: 121 GLKNWSEYGLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKNIDPKNVKTM 180
Query: 181 TFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQA 240
TFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQA
Sbjct: 181 TFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQA 240
Query: 241 ANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMYFNTKHKPLDNPLV 300
ANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMYFNTKHKPLDNPLV
Sbjct: 241 ANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMYFNTKHKPLDNPLV 300
Query: 301 RKAIAEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAK 360
RKAIAEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAK
Sbjct: 301 RKAIAEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAK 360
Query: 361 LLDEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYD 420
LLDEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYD
Sbjct: 361 LLDEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYD 420
Query: 421 WGTMVSKQQAGEFDLTMHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELL 480
WGTMVSKQQAGEFDLTMHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELL
Sbjct: 421 WGTMVSKQQAGEFDLTMHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELL 480
Query: 481 DELAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLFYEANTQYWANWPNEKNPTGVPI 540
DELAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLFYEANTQYWANWPNEKNPTGVPI
Sbjct: 481 DELAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLFYEANTQYWANWPNEKNPTGVPI 540
Query: 541 FWPGFGTWGTALAFLSVRPAKAIGPTTVTQTVEKTQTVEKTQTVEKTQTVEKTQTIEKTV 600
FWPGFGTWGTALAFLSVRPAKAIGPTTVTQTVEKTQTVEKTQTVEKTQTVEKTQTIEKTV
Sbjct: 541 FWPGFGTWGTALAFLSVRPAKAIGPTTVTQTVEKTQTVEKTQTVEKTQTVEKTQTIEKTV 600
Query: 601 EKTVTQTKGGICGPALIIALAAIPLVAVRRKRR 633
EKTVTQTKGGICGPALIIALAAIPLVAVRRKRR
Sbjct: 601 EKTVTQTKGGICGPALIIALAAIPLVAVRRKRR 633
>pir||A71163 hypothetical protein PH0502 - Pyrococcus horikoshii
>gi|3256907|dbj|BAA29590.1| (AP000002) 641aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 641
Score = 1106 bits (2829), Expect = 0.0
Identities = 516/635 (81%), Positives = 569/635 (89%), Gaps = 4/635 (0%)
Query: 1 MKKFLATLLIGLFFLSTIGIVSAAEELPREQTLYTANSSPPTNANPVYGSNIIPIAGLVF 60
MKK+L +L+ L +G+V AAEELPRE+TLYTANSSPPTNANP+ GSNIIPIAGLVF
Sbjct: 6 MKKYLVIVLVATLLLGNLGVVLAAEELPREETLYTANSSPPTNANPLQGSNIIPIAGLVF 65
Query: 61 EPLFQLNFMKTELVPWLAEYGKWVSSNVFEVKLREGTKWQDGKPLTAEDVKFSFEYYEKV 120
EPLF LNFMKTELVPWLA+YGKWVS NVFEVKLREGT+WQDGKPLTA DVKFSFEYYEK
Sbjct: 66 EPLFMLNFMKTELVPWLADYGKWVSDNVFEVKLREGTRWQDGKPLTANDVKFSFEYYEKA 125
Query: 121 GLKNWSEYGLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKNIDPKNVKTM 180
GLK+WS YGL+EIKVVDDRT+QFVF TPNVWAWRN+LY VLILPEH+FKNIDP+ V M
Sbjct: 126 GLKDWSRYGLKEIKVVDDRTVQFVFSGTPNVWAWRNELYSVLILPEHIFKNIDPQKVIHM 185
Query: 181 TFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQA 240
TFLGDEQKYLVGSGPYKLYKV+ QQKAIF+RND+WWGA+YFGLP+PKYIVQLYV SNDQA
Sbjct: 186 TFLGDEQKYLVGSGPYKLYKVIEQQKAIFVRNDNWWGAKYFGLPSPKYIVQLYVGSNDQA 245
Query: 241 ANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMYFNTKHKPLDNPLV 300
ANMFL+GDLDVGTYYVDIVELKKKNP+IVSWLDRPPYFPPVVPVIMYFN KHKPLDNPLV
Sbjct: 246 ANMFLKGDLDVGTYYVDIVELKKKNPHIVSWLDRPPYFPPVVPVIMYFNVKHKPLDNPLV 305
Query: 301 RKAIAEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAK 360
RKAIAEAICPAQIV+QGPISDLPDQTPLGN+MK WKEKIGVSQLI++YGW+YC+P +AAK
Sbjct: 306 RKAIAEAICPAQIVQQGPISDLPDQTPLGNVMKPWKEKIGVSQLIEKYGWRYCNPTEAAK 365
Query: 361 LLDEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYD 420
LLDEAGIKD DGDG REYNGKD VLTFAACG CSDWMQAVEI+VNQLK +GIKVDV+KYD
Sbjct: 366 LLDEAGIKDVDGDGIREYNGKDFVLTFAACGVCSDWMQAVEIIVNQLKAVGIKVDVKKYD 425
Query: 421 WGTMVSKQQAGEFDLTMHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELL 480
WGTMVSKQQAGEFDLTMHWAGTF+ DPYSVY++L+YYKN+ +KGGANFGNYYNPK NELL
Sbjct: 426 WGTMVSKQQAGEFDLTMHWAGTFKPDPYSVYYDLLYYKNDKEKGGANFGNYYNPKVNELL 485
Query: 481 DELAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLFYEANTQYWANWPNEKNPTGVPI 540
DELAKT DEAKQV+LL ELT+IWL+DV AVPLYMGTLFYEANTQYWANWPNE NP GVPI
Sbjct: 486 DELAKTPDEAKQVQLLAELTKIWLQDVPAVPLYMGTLFYEANTQYWANWPNEDNPYGVPI 545
Query: 541 FWPGFGTWGTALAFLSVRPAKAIGPT--TVTQTV--EKTQTVEKTQTVEKTQTVEKTQTI 596
FWPGFGTWGTALAFL VRPAKAI PT T+ QTV EKT+TV + +T KT TV K+ +
Sbjct: 546 FWPGFGTWGTALAFLGVRPAKAITPTTSTIVQTVTKEKTETVTQEKTEVKTVTVTKSPSP 605
Query: 597 EKTVEKTVTQTKGGICGPALIIALAAIPLVAVRRK 631
KT T T TKGG+CGPA ++ L +PL+ RR+
Sbjct: 606 TKTTTPTTTTTKGGVCGPAALVGLVVVPLLLRRRR 640
>pir||H75141 oligopeptide-binding protein appa precursor PAB0627 - Pyrococcus
abyssi (strain Orsay) >gi|5458360|emb|CAB49849.1|
(AJ248285) OLIGOPEPTIDE-BINDING PROTEIN APPA PRECURSOR
[Pyrococcus abyssi]
Length = 644
Score = 453 bits (1153), Expect = e-126
Identities = 255/649 (39%), Positives = 376/649 (57%), Gaps = 30/649 (4%)
Query: 1 MKKFLATLLIGLFFLSTIG---IVSAAEELPREQTLYTANS--SPPTNANP-VYGSNIIP 54
MKK +A +++GLF LS +V+ +LPR +TLY S P N NP V + +
Sbjct: 9 MKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFNPTVSWAAVTG 68
Query: 55 IAGLVFEPLFQLNFMKTELVPWLAEYGKWVSSNVFEVKLREGTKWQDGKPLTAEDVKFSF 114
GL++E LF + +K +L PWLAE GKW+S N + V L+EG WQDGKPLTAEDVKF+F
Sbjct: 69 TIGLIYETLFIYDPLKDKLEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLTAEDVKFTF 128
Query: 115 EYY-EKVGLKNWSEYG-LREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKNI 172
+Y E GL +G L+E+KVVD+RT+ F+F + P+ W+ LY + I+PEH++KNI
Sbjct: 129 DYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSE-PHYEEWKYWLYNIAIIPEHIWKNI 187
Query: 173 DPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQL 232
D K +F E +GSG YKLYK Q + I +RND WWG +Y+G PAPKYIV +
Sbjct: 188 D----KPESFANTENP--IGSGMYKLYKT-DQMRFILVRNDKWWGIKYYGKPAPKYIVYV 240
Query: 233 YVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMYFNTKH 292
V SN+ A +M ++GDLD +++ V K IV+W D+ PY P+ ++ NT+
Sbjct: 241 IVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQK 300
Query: 293 KPLDNPLVRKAIAEAICPAQIVKQGPISDLPDQTPLGNIMK-SWKEKIGVSQLIKEYGWK 351
PL+NP+ R+AIA AI P +I + + + P G ++ +KI + +K+YG+
Sbjct: 301 PPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFT 360
Query: 352 YCDPQDAAKLLDEAGIKDTDGDGWREY-NGKDLVLTFAACGPCSDWMQAVEIVVNQLKVI 410
Y DP A ++LD+ G KD +GDG+RE +GK L T +DWM+ ++ QL+++
Sbjct: 361 Y-DPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMV 419
Query: 411 GIKVDVRKYDWGTMVSKQQAGEFDLTMHWAGTFESDPYSV---YHNLMYYKNETDKG--- 464
GI+VD + D+G G FD+ ++ F S Y+ + N ++Y + G
Sbjct: 420 GIRVDPKFPDYGKYWDDLTKGNFDMIIN---NFGSQVYATPWQWFNWVFYPDVAPIGKPT 476
Query: 465 -GANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLFYEANT 523
N+G Y N + ELL + DE K+++ EL EI+LKD+ +PL ++EA+T
Sbjct: 477 YSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIYNGAWFEAST 536
Query: 524 QYWANWPNEKNPTGVPIFWPGFGTWGTALAFLSVRPAKAIGPTTVTQTVEKTQTVEKTQT 583
QYW NWP E NP +PI W + G L+++PAKA ++ T T KT T T T
Sbjct: 537 QYWTNWPTEHNPYALPITWQNYWQMGGLKVLLNIKPAKATTTSSPTTTPTKT-TSSPTST 595
Query: 584 VEKTQTVEKTQTIEKTVEKTVTQTKGGICGPALIIALAAIPLVAVRRKR 632
TQT + + T T TKGGICGPAL++ +A +P++ +R++
Sbjct: 596 PTPTQTPSTSSPTATSTSPTETTTKGGICGPALLVGIAVVPILLRKRRK 644
>pir||C72278 hypothetical protein TM1226 - Thermotoga maritima (strain MSB8)
>gi|4981780|gb|AAD36301.1|AE001779_3 (AE001779)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein, putative [Thermotoga
maritima]
Length = 562
Score = 334 bits (848), Expect = 2e-90
Identities = 204/573 (35%), Positives = 305/573 (52%), Gaps = 25/573 (4%)
Query: 1 MKKFLATLLIGLFFLSTIGIVSAAEELPREQTLYTANS--SPPTNANPVYGSNIIP-IAG 57
MK+FL ++ F S V L R +T+Y S SPP+N NP N +P G
Sbjct: 3 MKRFLLVFVVVFLFSSLFSQV-----LERNETMYYGGSLWSPPSNWNPFTPWNAVPGTTG 57
Query: 58 LVFEPLFQLNFMKTELVPWLAEYGKWVSSNVFEVKLREGTKWQDGKPLTAEDVKFSFEYY 117
LV+E +F + + PWLAE G+W+ S + V LREG W D PLT+EDV+F+FE
Sbjct: 58 LVYETMFFYDPLTGNFDPWLAEKGEWLDSKTYRVVLREGIYWHDNVPLTSEDVRFTFEIA 117
Query: 118 EKVGLKNWSEY--GLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKNIDPK 175
+K ++S L I+ D+RT+ FVF K P W LY + I+P+H+++ D
Sbjct: 118 KKYKGIHYSSVWEWLDHIETPDNRTVIFVF-KDPRYHEWNELLYTLPIVPKHIWEEKD-- 174
Query: 176 NVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGL-PAPKYIVQLYV 234
T L +Y +GSGPY + Q K IF R ++WWG + G+ PAPKY+V + V
Sbjct: 175 ---ETTILQSSNEYPLGSGPYVAHS-WDQNKMIFERFENWWGTKVMGVKPAPKYVVIVRV 230
Query: 235 QSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMYFNTKHKP 294
SN+ A M ++G+LD + + V + KK N+ +W D PPY V ++ N + P
Sbjct: 231 LSNNVALGMLMKGELDFSNFMLPGVPILKKVYNLNTWYDEPPYHLSSTVVGLFLNARKYP 290
Query: 295 LDNPLVRKAIAEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCD 354
L P R+AIA +I IV++ + PLG + S K ++++++G+KY D
Sbjct: 291 LSLPEFRRAIAMSINADPIVQRVYEGAVLKADPLGFLPNSVWMKYYPKEVVEKHGFKY-D 349
Query: 355 PQDAAKLLDEAGIKDTDGDGWREY-NGKDLVLTFAACGPCSDWMQAVEIVVNQLKVIGIK 413
P++A +LD+ G +D +GDG+RE +GK + LT +DWMQA++++V+QLKV+GI
Sbjct: 350 PEEAKSILDKLGFRDVNGDGFRETPDGKPIKLTIECPYGWTDWMQAIQVIVDQLKVVGIN 409
Query: 414 VDVRKYDWGTMVSKQQAGEFDLTMHWAGTFESDPYSVYHNLMYYKNETDKG---GANFGN 470
+ D GEFD+ M+ GT S Y N ++Y + + N+G
Sbjct: 410 AEPYFPDSSKYYENMYKGEFDIEMNANGTGISSTPWTYFNTIFYPDALESEFSYTGNYGR 469
Query: 471 YYNPKANELLDELAKTA--DEAKQVELLRELTEIWLKDVSAVPLYMGTLFYEANTQYWAN 528
Y NP+ LL+EL +T + K EL +L EI LKD+ +PL+ G + + W N
Sbjct: 470 YQNPEVESLLEELNRTPLDNVEKVTELCGKLGEILLKDLPFIPLWYGAMAFITQDNVWTN 529
Query: 529 WPNEKNPTGVPIFWPGFGTWGTALAFLSVRPAK 561
WPNE NP P W + G +++PAK
Sbjct: 530 WPNEHNPYAWPCGWANWWQTGALKILFNLKPAK 562
>pir||E72282 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein - Thermotoga maritima (strain MSB8)
>gi|4981776|gb|AAD36298.1|AE001778_19 (AE001778)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Thermotoga maritima]
Length = 557
Score = 331 bits (839), Expect = 2e-89
Identities = 202/559 (36%), Positives = 303/559 (54%), Gaps = 31/559 (5%)
Query: 1 MKKFLATLLIGLFFLSTIGIVSAAEELPREQTLYTANS--SPPTNANPVYGSNIIP-IAG 57
MK+FL L++ L +S G + R +TLY + SPP+N NP N + G
Sbjct: 1 MKRFLVVLVLVLALVSVFG-----QTFERNKTLYWGGALWSPPSNWNPFTPWNAVAGTIG 55
Query: 58 LVFEPLFQLNFMKTELVPWLAEYGKWVSSNVFEVKLREGTKWQDGKPLTAEDVKFSFEYY 117
LV+EPLF + + + PWLAE G+WVS+N + + LR+G +WQDG PLTA+DV F+FE
Sbjct: 56 LVYEPLFLYDPLNDKFEPWLAEKGEWVSNNEYVLTLRKGLRWQDGVPLTADDVVFTFEIA 115
Query: 118 EK-VGLK-----NWSEYGLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKN 171
+K G+ NW L I+ VD+RT++FVF P W+ L I+P+H+++N
Sbjct: 116 KKYTGISYSPVWNW----LGRIERVDERTLKFVFSD-PRYQEWKQMLINTPIVPKHIWEN 170
Query: 172 IDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGL-PAPKYIV 230
+ V L + VGSGPY + + +F +N +WWG R G P P+ IV
Sbjct: 171 KTEEEV-----LQAANENPVGSGPYYVESWA-DDRCVFKKNGNWWGIRELGYDPKPERIV 224
Query: 231 QLYVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMYFNT 290
+L V SN+ A M ++G+LD +++ V + KK IV+W + PY P +Y N
Sbjct: 225 ELRVLSNNVAVGMLMKGELDWSNFFLPGVPVLKKAYGIVTWYENAPYMLPANTAGIYINV 284
Query: 291 KHKPLDNPLVRKAIAEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGW 350
PL P R+A+A AI P +IV + + + P G + K +++ +YG+
Sbjct: 285 NKYPLSIPEFRRAMAYAINPEKIVTRAYENMVTAANPAGILPLPGYMKYYPKEVVDKYGF 344
Query: 351 KYCDPQDAAKLLDEAGIKDTDGDGWREY-NGKDLVLTFAACGPCSDWMQAVEIVVNQLKV 409
KY DP+ A K+LDE G KD + DG+RE NGK LT +DWM +++ + L
Sbjct: 345 KY-DPEMAKKILDELGFKDVNKDGFREDPNGKPFKLTIECPYGWTDWMVSIQSIAEDLVK 403
Query: 410 IGIKVDVRKYDWGTMVSKQQAGEFDLTMHWAGTFESDPYSVYHNLMYYKNETDKG---GA 466
+GI V+ + D+ G+FDL ++ T S Y N ++Y + +
Sbjct: 404 VGINVEPKYPDYSKYADDLYGGKFDLILNNFTTGVSATIWSYFNGVFYPDAVESEYSYSG 463
Query: 467 NFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLFYEANTQYW 526
NFG Y NP+ LLDEL ++ D+AK E++ +L+EI LKD+ +PL+ +++A+ W
Sbjct: 464 NFGKYANPEVETLLDELNRSNDDAKIKEVVAKLSEILLKDLPFIPLWYNGAWFQASEAVW 523
Query: 527 ANWPNEKNPTGVPIFWPGF 545
NWP EKNP VPI W G+
Sbjct: 524 TNWPTEKNPYAVPIGWNGW 542
>pir||A72429 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein - Thermotoga maritima (strain MSB8)
>gi|4980515|gb|AAD35125.1|AE001690_19 (AE001690)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Thermotoga maritima]
Length = 606
Score = 217 bits (546), Expect = 4e-55
Identities = 161/556 (28%), Positives = 266/556 (46%), Gaps = 29/556 (5%)
Query: 1 MKKFLATLLIGLFFLSTIGIVSAAEELPREQTLYTANS--SPPTNANPVYGSNIIPIAGL 58
M+K L LL+ L LS++ A LPRE T+Y + P T N +
Sbjct: 3 MRKSLV-LLLALLVLSSL---MAQVSLPREDTVYIGGALWGPATTWNLYAPQSTWGTDQF 58
Query: 59 VFEPLFQLNFMKTELVPWLAEYGKWVSSNVFEVKLREGTKWQDGKPLTAEDVKFSFEYYE 118
++ P FQ + + +P +AE ++V + +R +W DG P+TA+D ++ E +
Sbjct: 59 MYLPAFQYDLGRDAWIPVIAERYEFVDDKTLRIYIRPEARWSDGVPITADDFVYALELTK 118
Query: 119 KVGLK---NWSEYGLREIKVVDDRTIQF-VFEKTPNVWAWRNQLYRVLILPEHVFKNIDP 174
++G+ W Y + +K VD + ++F E+ N + + + +P+HV++ I
Sbjct: 119 ELGIGPGGGWDTY-IEYVKAVDTKVVEFKAKEENLNYFQFLSYSLGAQPMPKHVYERIRA 177
Query: 175 K-NVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLY 233
+ N+K ++ D+ + V SGPYKLY P ++ R DDWWG FGLP PKY+ +
Sbjct: 178 QMNIKD--WINDKPEEQVVSGPYKLYYYDPNI-VVYQRVDDWWGKDIFGLPRPKYLAHVI 234
Query: 234 VQSNDQAANMFLRGDLDV-GTYYVDIVEL-KKKNPNIVSWLDRPPYFPPVVPVIMYFNTK 291
+ N A+ F RGD+D G + + EL +KK + +W + PYF P +Y N
Sbjct: 235 YKDNPSASLAFERGDIDWNGLFIPSVWELWEKKGLPVGTWYKKEPYFIPDGVGFVYVNNT 294
Query: 292 HKPLDNPLVRKAIAEAICPAQIVKQGPISDLPDQTP--LGNIMKSWKEKIGVSQLIKEYG 349
L +P VRKAIA AI +++K+ P + ++ + +K+ I K +G
Sbjct: 295 KPGLSDPAVRKAIAYAIPYNEMLKKAYFGYGSQAHPSMVIDLFEPYKQYIDYELAKKTFG 354
Query: 350 WKY----CDPQDAAKLLDEAGIKD-TDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVV 404
+ D A K+LDEAG K DG K T + +DWM E++
Sbjct: 355 TEDGRIPFDLDMANKILDEAGYKKGPDGVRVGPDGTKLGPYTISVPYGWTDWMMMCEMIA 414
Query: 405 NQLKVIGIKVDVRKYDWGTMVSKQQAGEFDLTMHWA-GTFESDPYSVYHNLMYYKNETDK 463
L+ IGI V D+ + G FDL + W+ G P+++Y ++ +
Sbjct: 415 KNLRSIGIDVKTEFPDFSVWADRMTKGTFDLIISWSVGPSFDHPFNIYRFVLDKRLSKPV 474
Query: 464 G----GANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLFY 519
G ++ Y N + ELLD+ T D + + + +I +D+ ++P + +Y
Sbjct: 475 GEVTWAGDWERYDNDEVVELLDKAVSTLDPEVRKQAYFRIQQIIYRDMPSIPAFYTAHWY 534
Query: 520 EANTQYWANWPNEKNP 535
E +T+YW NWP+E NP
Sbjct: 535 EYSTKYWINWPSEDNP 550
>pir||H82301 peptide ABC transporter, periplasmic peptide-binding protein VC0620
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9655053|gb|AAF93786.1| (AE004147) peptide ABC
transporter, periplasmic peptide-binding protein [Vibrio
cholerae]
Length = 556
Score = 149 bits (373), Expect = 8e-35
Identities = 135/543 (24%), Positives = 242/543 (43%), Gaps = 54/543 (9%)
Query: 43 NANPVYGSNIIPIAGLVFEPLFQLNFMKTELVPWLAEYGKWVSSNVFEVK--LREGTKWQ 100
N NP +N+ ++EPL N MK + ++ ++ V +R+G KW
Sbjct: 44 NFNPYLATNLRTTTDFIYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWS 103
Query: 101 DGKPLTAEDVKFSFEYY------EKVGLKNWSEYGLREIKVVDDRTIQFVFEKTPNVWAW 154
DG+ TA+DV +SF ++ G+ W + ++ VD+ ++F + +
Sbjct: 104 DGEAFTADDVVYSFGLLKAKPELDQRGINKW----VTSVEKVDEYKVRFRLSEANS---- 155
Query: 155 RNQLYRVLILP---EHVFKNI-DPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFI 210
N Y + ++P EHV+K++ DP TF + VG+GP+ + Q I
Sbjct: 156 -NVPYEISLIPIVAEHVWKDVKDPT-----TFTNENP---VGTGPFTVIDTFTPQLYIQC 206
Query: 211 RNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVE--LKKKNPNI 268
RN ++W A + + + +NDQ + +LD + +V ++ NPN
Sbjct: 207 RNPNYWDAANLEVDCLRVP---QIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNH 263
Query: 269 VSWLDRPPYFPPVVPVIMYFNTKHKPLDNPLVRKAIAEAICPAQIVK-----QGPISDLP 323
W +V K + LDN R+A + A+ I+ G ++D
Sbjct: 264 HYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFA 323
Query: 324 DQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREY-NGKD 382
+ LG ++W ++ K G+ D + + KLL +AG KD +GDG+ E +GK
Sbjct: 324 --SGLGYAFEAWSDEATHK---KYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKS 378
Query: 383 LVLTFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFDL--TMHWA 440
L + +D+ V++ V QL+ +GIK R ++ G +D+ T ++
Sbjct: 379 FELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFH 438
Query: 441 GTFESDPYSVYHNLMYYKNETDKGGANFGNYY--NPKANELLDELAKTADEAKQVELLRE 498
G +DP++ +++ ++ G F +Y + K + LLD KTAD+ +Q+ +
Sbjct: 439 G---ADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHG 495
Query: 499 LTEIWLKDVSAVPLYMGTLFYEANTQYWANWPNEKNPTGVPIFWPGFGTWGTALAFLSVR 558
+ +I ++ +P+ G Y+ NT + W +E+NP G P W G L L ++
Sbjct: 496 IQKIIAENQVTIPVMSGAWMYQYNTTRFTGWWSEENPKGRPSVWAGIPE--RLLHVLDLK 553
Query: 559 PAK 561
P K
Sbjct: 554 PVK 556
>pir||B71130 probable oligopeptide binding protein APPA - Pyrococcus horikoshii
>gi|3257217|dbj|BAA29900.1| (AP000003) 597aa long
hypothetical oligopeptide binding protein APPA
[Pyrococcus horikoshii]
Length = 597
Score = 139 bits (348), Expect = 7e-32
Identities = 194/677 (28%), Positives = 294/677 (42%), Gaps = 127/677 (18%)
Query: 1 MKK---FLATLLIGLFFLSTIGIVSAAEE--LPREQ----TLYTANSSPPTNANPV---- 47
MKK F+ TL + L +S +GI A+E P + TL P + NP
Sbjct: 1 MKKRSLFVITLFLVLV-VSQLGIAKASEVKVFPGVKRIGGTLIVLYWGDPKSFNPDAQVD 59
Query: 48 ---YGSNIIPIAGLVFEPLFQLNFMKTELVPWLAEYGKWVSSN---VFEVKLREGTKWQD 101
YG IA +F L L+ ++P LA KW S+ V+ L W D
Sbjct: 60 DAGYG-----IANQIFCKLVTLD-RDYNVIPDLAY--KWEISDDGKVYTFYLNPNATWHD 111
Query: 102 GKPLTAEDVKFSFEYYEKVGLKNWSEYGL------REIKVVDDRTIQFV----FEKTPNV 151
G P+TAEDVK++FE +K YG+ +I+VVD+ T++F F +
Sbjct: 112 GVPVTAEDVKWTFEAIKKY---KGIAYGIIHADNIEKIEVVDNYTVRFYLKEPFAPFLSF 168
Query: 152 WAWRNQLYRVLILPEHVFKN----IDPKNVKTMTFLGDEQKYL---VGSGPYKLYKVVPQ 204
AW Y ILP+H+++ +DPKN YL +G GP+K + V
Sbjct: 169 LAW----YGTFILPKHIYEKYSDWLDPKN-----------PYLNKPIGCGPFKFVEWVKG 213
Query: 205 QKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKK- 263
+ N++++ R P I+ + A FL G+ DV + E+ +
Sbjct: 214 DHITLVANENYFRGR----PGIDKIIYKIIPDASAALQAFLAGEGDVLGQRPPLTEIPRL 269
Query: 264 KNPNIVSWLDRPPYFPPVVPVIMY--FNTKHKPLDNPLVRKAIAEAICPAQIVKQGPIS- 320
K+ VS RP VP Y FN K L + VR AIA AI ++V++
Sbjct: 270 KSTPGVSVSIRP------VPSRWYLGFNLKRPYLQDVRVRLAIAYAINRKELVEKAENGL 323
Query: 321 DLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREY-N 379
P + G + + K + + EY +P+ A +LLDEAG KD +GDG+RE +
Sbjct: 324 GYPAE---GTYVPAIKWAYNPNAKLPEY-----NPEKAKQLLDEAGFKDINGDGFRETPD 375
Query: 380 GKDLVLTFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYD---WGTMVSKQQAGEFDLT 436
GK L L SD ++ QL +G+KV + Y+ W V K++ + L
Sbjct: 376 GKPLELRLLYFTG-SDTNAICTLIKEQLAKVGLKVKLESYEIATWEQKVVKERDFDLALV 434
Query: 437 MHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELL 496
+ G ++ + + Y NF Y N + ++LL+E AKT D K+ EL
Sbjct: 435 DGFQGPDPANMEIRFKSTAYI---------NFAGYNNTEFDKLLEEAAKTTDTEKRKELY 485
Query: 497 RELTEIWLKDVSAVPLYMGTLFYEANTQYWANWPNEKNPTGVPIFWPGFGTWGTALAFLS 556
+ EI KD+ +PL + + W +E + G+P G G
Sbjct: 486 WKAQEILAKDLPYLPL--------VDLVAISVWRSEFH--GMPWEDEAVGKVG------- 528
Query: 557 VRPAKAIGPTTVTQTVEKTQTVEKTQTVEKTQTVEKTQTIEKTVEKTVTQTKGGICGPAL 616
IG + EK + +E+T ++T KT + +T T+ K G+CGPA
Sbjct: 529 ------IGSYAMVWW-EKGKPIEETTNKPTSET--KTSISSASPTQTATKEK-GVCGPAS 578
Query: 617 IIALAAIPLVAVRRKRR 633
I++L IP+V R KRR
Sbjct: 579 ILSLIIIPVV-FRLKRR 594
>pir||G72420 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein - Thermotoga maritima (strain MSB8)
>gi|4980559|gb|AAD35165.1|AE001694_1 (AE001694)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Thermotoga maritima]
Length = 625
Score = 122 bits (302), Expect = 2e-26
Identities = 154/631 (24%), Positives = 258/631 (40%), Gaps = 105/631 (16%)
Query: 1 MKKFLATLLIGLFFLSTIGIVSAAEELPREQT----LYTANSSPPTNANPVYGS--NIIP 54
MKKFL L + F ++ +PR +T + T ++ PTN N G
Sbjct: 1 MKKFLVVLFVVSMF--SLFFAQLPPNIPRNETFIAQVLTGRAANPTNFNVWTGWVWQDRG 58
Query: 55 IAGLVFEPLFQLNFMKTELVPWLAEYGKWVSSNVFE--VKLREGTKWQDGKPLTAEDVKF 112
I L+ EPL+ ++F +++ LAE +S+ E +KLR+G W DG+P TA+DV F
Sbjct: 59 IQNLLLEPLWYVDFATGKIISALAESLPTYNSDFTELTIKLRKGVYWSDGEPFTADDVVF 118
Query: 113 SFEYYEKVGLKNWSEYGLREIKVV---DDRTIQFVFEKTPNVWAWRNQLYR---VLILPE 166
+ E + + + E++ V DD T++ K PN + R + +P+
Sbjct: 119 TIETIMSTPAFGYHQELVNEVESVEKLDDYTVKIKL-KRPNARFHAYFIDRWGGIRPMPK 177
Query: 167 HVFKNI-DPKNVKTMTFLGDEQKYLVGSGPYKLYKVVP-QQKAIFIRNDDWW---GARYF 221
HVF+ + DP N E VG+GPY L+ V P ++ R +DW F
Sbjct: 178 HVFEKVEDPVNF--------EFNPPVGTGPYVLHSVDPGGYWTLWQRREDWERTPTGMLF 229
Query: 222 GLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVE-LKKKNPNIVSWLDRPPYFPP 280
G+P PKY++ + S ++ + LD ++ ++ + + +W P+
Sbjct: 230 GMPQPKYVLFIDYGSPEKQVLAMAQHQLDEAILTIEALKAVLNRVKTARAWRKNFPWTVN 289
Query: 281 VVPVI--MYFNTKHKPLDNPLVRKAIAEAICPAQIVK---QGPISDLPDQTPLGNI---- 331
P + FNT +P +N VR A+ AI + G ++ P PL
Sbjct: 290 NDPCVTGFVFNTAKEPFNNIEVRWALTLAIDIVEYAANAFDGAVTLSPIHIPLSTAYYNW 349
Query: 332 --------MKSWKEKIGVSQLIKEYG---------------------------------W 350
+K+++ +G + K Y W
Sbjct: 350 YFTRLEDWLKNYEIDLGNGEKFKPYDPEAGLRLAEYAKKRGYSVPDSPEIIKRTFGPGWW 409
Query: 351 KYCDPQDAAKLLDEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQL-KV 409
KY P AAKLL++ G W NG +T A SD ++Q K
Sbjct: 410 KYA-PDVAAKLLEKNGFYRDKNGKWHLPNGDLWQITIIAPTNPSDPAYRNAFALSQAWKK 468
Query: 410 IGIKVDVRKYDWGTMVSKQQAGEFDLTMHWAGTFESDPY----SVYHNLMYYKNE----- 460
GI V+ + + G FD+ W ++P+ +Y L + +E
Sbjct: 469 FGIDAVVQTSENANSFGAE--GNFDVHTAWPA---AEPWGGHPDLYRTLYPFHSEYVVPI 523
Query: 461 -TDKGGANFGNYYNPKANELLDELAKT--ADEAKQVELLRELTEIWLKDVSAVPL--YMG 515
D N+ + +P+ +++++EL T + K +EL E +I ++ + +VP Y G
Sbjct: 524 GEDAPWGNYCRWSDPRLDKIIEELKNTPWGNTQKLIELGTEALKIIVEGLPSVPTFNYPG 583
Query: 516 TLFYEANTQYWANWPNEKNPTGVPI-FWPGF 545
+ ++ YW N+P +NP P WP F
Sbjct: 584 VIAWD--EYYWTNYPGAENPYTQPYQHWPNF 612
>pir||A72393 hypothetical protein TM0300 - Thermotoga maritima (strain MSB8)
>gi|4980800|gb|AAD35388.1|AE001712_1 (AE001712)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein, putative [Thermotoga
maritima]
Length = 611
Score = 118 bits (292), Expect = 2e-25
Identities = 155/622 (24%), Positives = 260/622 (40%), Gaps = 109/622 (17%)
Query: 1 MKKFLATLLIGLFFLSTIGIVSAAEELPREQTLYTANSSPPTNANPVYGSNIIP------ 54
MK+FL ++ F ++ + +PREQT+ P ANP N+I
Sbjct: 1 MKRFLFVAVLFTIFAASF---AQFLNVPREQTVIVPG---PKTANPG-DFNVIAGWKDPH 53
Query: 55 --IAGLVFEPLFQLNFMKTELVPWLAEYGKWVSSNVFE--VKLREGTKWQDGKPLTAEDV 110
I L+ EPL+ + ++ E++ LAE G + + + VKLR+G W DG P TA+DV
Sbjct: 54 RGIQQLLLEPLWMDDPVRGEIINALAETGPIYNEDFTKMIVKLRKGVYWSDGVPFTADDV 113
Query: 111 KFSFE----YYEKVGLKNWSEYGLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRV----- 161
F+ E Y E ++EY + ++ DD T+ F +K PN R Y +
Sbjct: 114 VFTVEMCMKYPEMARHMEFNEY-IDKVYKEDDYTVVFELKK-PNT---RFHTYFIDRWGY 168
Query: 162 -LILPEHVFKNI-DPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQ-QKAIFIRNDDWW-- 216
+P+HVF+ + DP +G VG+GPY L P ++ R +DW
Sbjct: 169 WWPMPKHVFEKVEDP--------VGFTFNPPVGTGPYVLKDYDPAGYWVLWERREDWQRT 220
Query: 217 -GARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRP 275
FG+P PKY++ +++++ FL+ LD ++ K V
Sbjct: 221 PTGMIFGMPKPKYVLFYAYETDEKITLAFLQNQLDAAGIGPQALKALLKRSKYVKLYSDF 280
Query: 276 PYFPPVVPVI--MYFNTKHKPLDNPLVRKAIAEAICPAQ---------IVKQGPISDLPD 324
P+ P V PV+ + NT P + VR A+A A+ + ++ I LP
Sbjct: 281 PFVPLVDPVVGGITINTAKYPFNMKEVRWALALALDIVKLSETEEGNMLISALHIPPLPL 340
Query: 325 QTPL-GNIMKSWKEKIGV--------------SQLIKEYGWKYCD--------------- 354
L ++ W + + V +++ K YGW D
Sbjct: 341 YRKLYYEPLEEWLQNLTVNGVKVYDPDVPLKIAEVAKRYGWNVPDDPEKIKLGVGSGWWK 400
Query: 355 --PQDAAKLLDEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLKVIGI 412
P A +LL G K W NG + G + + A V Q + GI
Sbjct: 401 HLPDVAEQLLLSVGFKRDKNGKWLLPNGTPWKIQL---GTNPNDLVAFG-VAQQWREFGI 456
Query: 413 KVDVRKYDWGTMVSKQQAGEFD--LTMHWAGTFESDPYSVYHNLMY-----YKNE-TDKG 464
VDV T +S G F+ +T +W ++ H +Y Y+N+ +G
Sbjct: 457 DVDVIT----TYISGINEGNFEVLITGNWPAPEPWGGHADLHRTLYFFHSKYQNKPLGEG 512
Query: 465 GANFGNYYNPKANELLDELAKTA-DEAKQVELLRELTEIWLKDVSAVPLYMGTLFYEA-- 521
+ +++ + ++++DE+ K ++ + +E RE +I +++ +P+ + A
Sbjct: 513 VGHVSRWFDERLDKIIDEMEKLDWNDPRNIEFGREGLKILAEELPTIPIGTIGVLTTALV 572
Query: 522 -NTQYWANWPNEKNPTGVPIFW 542
N YW NWP +NP +P +W
Sbjct: 573 YNDYYWTNWPTLENPYMMP-YW 593
>pir||S62194 hypothetical protein 4 - Methanosarcina barkeri (fragment)
>gi|1124957|emb|CAA63625.1| (X93084) orf4
[Methanosarcina barkeri] >gi|1587233|prf||2206350A ORF 4
[Methanosarcina barkeri]
Length = 529
Score = 108 bits (267), Expect = 2e-22
Identities = 112/432 (25%), Positives = 192/432 (43%), Gaps = 35/432 (8%)
Query: 73 LVPWLAEYGKWVSSNVFEVKLREGTKWQDGKPLTAEDVKFSFEYYEKVGLKNWSEYGLRE 132
L P LA + + N +E KLR + DG +TAEDV F+ E K S +
Sbjct: 102 LKPGLATSWEQLDENTWEFKLRNNVTFHDGSKMTAEDVNFTLEKVISENAKVASMLKIDS 161
Query: 133 IKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKNIDPKNVKTMTFLGDEQKYLVG 192
I++VD+ T++ KT + L VL P+ I P + E VG
Sbjct: 162 IEIVDNYTLKI---KTKEI---NPILPGVLHYPDTAI--ISPSSYNE----NGEFVKPVG 209
Query: 193 SGPYKLYKVVPQQKAI-FIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDV 251
+GPYKL Q + + ++ND+WWG + K I++ N +A G++D
Sbjct: 210 TGPYKLESFDEQTRVLTVVKNDNWWGGE---VGLDKMILKGIPDPNTRAM-AIENGEVD- 264
Query: 252 GTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMYFNTKHKPLDNPLVRKAIAEAICPA 311
+ VD+ + + + ++ Y P V + N KH+PL++ VR+A++ AI +
Sbjct: 265 --FTVDVPYSETDRIDAIDGINVEKYKTPRV-YKLDLNLKHEPLEDVRVRQAMSYAIDRS 321
Query: 312 QIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTD 371
I + + + G + + + ++ +K Y D + A +LL AG DTD
Sbjct: 322 DIAEN--VLYNVGEAAAGPFLPT---MVWANKSLKPYSQ---DLEKADELLTAAGWVDTD 373
Query: 372 GDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAG 431
GDG R+ +G+ L E + QL+ GI ++ + G++ ++++G
Sbjct: 374 GDGIRDKDGQPLKFNLMTYSARPGLPPMAEAMAAQLREAGIGIETEVLEMGSIDDRRESG 433
Query: 432 EFDLTM-HWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEA 490
++DL + + DP + N Y N TD N Y NPK + L+ E K + +
Sbjct: 434 DWDLYLAAYNIAMVPDPEYILTN-WYMTNGTD----NNAGYSNPKVDSLITEARKITNMS 488
Query: 491 KQVELLRELTEI 502
++ + E+ I
Sbjct: 489 ERYKKFNEVEAI 500
>emb|CAC12450.1| (AL445067) dipeptide ABC transport system, periplasmic
dipeptide-binding protein dppA [Thermoplasma
acidophilum]
Length = 609
Score = 108 bits (266), Expect = 3e-22
Identities = 131/570 (22%), Positives = 226/570 (38%), Gaps = 67/570 (11%)
Query: 5 LATLLIGLFFLSTIGIVS-AAEELPREQTLYTANSSPPT---NANPVYGSNIIP--IAGL 58
+AT + G S + I S +A TLY + P N NP G + P I GL
Sbjct: 24 VATAVYGPMQQSNLHINSFSATSNDNSSTLYLSPGPTPAFTDNFNPFDGVWLTPAGIMGL 83
Query: 59 VFEPLFQLNFMKTELVPWLAEYGKWVS-SNVFEVKLREGTKWQDGKPLTAEDVKFSFEYY 117
++EPL Q+N ++PWLA W S + + + LR G ++ +G P A DV ++F
Sbjct: 84 IYEPLLQINTYNGTVIPWLATGYSWNSNATILTMYLRHGVEFSNGLPFNASDVVYTFNEQ 143
Query: 118 EKVGLKNWSEYG-LREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKN-IDP- 174
+ + + E+G ++ I V+ + F F +PN + + +I+PE +F N DP
Sbjct: 144 KAL----FGEWGVIKNITAVNPYEVNFTF-TSPNT-EYLFYIGSNIIVPEQLFANSTDPL 197
Query: 175 KNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYV 234
K + T +G+GPY L P QK + N ++W G P K +V +
Sbjct: 198 KEIVTNP---------IGTGPYVLQSFSP-QKIVLTANPNYWQK---GEPKIKTVVYVEY 244
Query: 235 QSNDQAANMFLRGDLDVGTYYVDIVE--LKKKNPNIVSWLDRPPYFPPVVPVIMYFNTKH 292
SN G + + + + KNP + +FP PV + N
Sbjct: 245 TSNSALTLAMQSGQVQWASVFAPNITTLFVSKNPQYNHY-----WFPQGQPVTLLLNDMV 299
Query: 293 KPLDNPLVRKAIAEAICPAQIVKQGPISDLPDQTPLGNIMKSWKE----KIGVSQLIKEY 348
PL+ R+AI+ AI I+ G G + + E + ++ + +
Sbjct: 300 YPLNMSFFRQAISVAINRTAIMNIGEYGYEQPANAAGLLYQQLGELNSTNLALANKLATF 359
Query: 349 GWKYCDPQDAAKLLDEAG--IKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQ 406
Y A ++L + G I T G L + SDW + ++ N+
Sbjct: 360 NLTY-----AKQILADHGFIINSTTGRLTAPNGTPVPTLNLMSVAGYSDWDTDIALIANE 414
Query: 407 LKVIGIKVDVRKYDWGTMVSKQQAGEFDLTMHWAGTFESDPYSVYHNLM----------Y 456
L +G+ V++ T+ G++ + ++ + + Y L+ Y
Sbjct: 415 LNQLGLTVNLETPTQNTVSQDVTDGQYQMALYVDTGIGPNAWYDYSGLVGPVVKASSPAY 474
Query: 457 YKNET-DKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVSAVPLYMG 515
E + G F Y++ + +Q + ++ I L+ + V +
Sbjct: 475 VNPERWNATGTGFMQYFH--------NFTALTNTTQQDVYINKMASIMLQQMPIVYVVYS 526
Query: 516 TLFYEANTQYWANWPNEKNPTGVPIFW-PG 544
+YE WPN +NP +P+ W PG
Sbjct: 527 ADWYEYVNSTIGGWPNAQNPFWIPMPWYPG 556
>gb|AAB34223.1| (S75873) 60 kda antigen [Borrelia coriaceae]
Length = 514
Score = 106 bits (263), Expect = 6e-22
Identities = 136/555 (24%), Positives = 228/555 (40%), Gaps = 80/555 (14%)
Query: 9 LIGLFFLSTIGIVSAAEELPREQTLYTANSSPPTNANPVYGSNIIPIAGLV--FEPLFQL 66
+I L FL + +E + T N + P + +P ++I + ++ F L
Sbjct: 6 IIFLSFLIIWLTSCSGDEQKDKITFRVTNEAEPDSIDPQLATSIQSLNVIINTFSGLTTR 65
Query: 67 NFMKTELVPWLAEYGKW-VSSN--VFEVKLREGTKWQDGKPLTAEDVKFSF--------- 114
N P LA+ W +S N V+ LREG W DG P+TAE ++ S+
Sbjct: 66 NTQTGGYKPGLAQ--SWDISDNGLVYTFHLREGIIWSDGVPITAEGIRRSYLRVLNKETG 123
Query: 115 -EYYE--KVGLKNWSEY-------GLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLIL 164
+Y + K +KN +Y IK +DD T++ + Y + +L
Sbjct: 124 SQYVDIVKSTIKNAKDYFEGKIPESELGIKTIDDSTLEITLVAP--------KPYFLDML 175
Query: 165 PEHVFKNIDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLP 224
F + ++ + +V SG YKL +P +K + +ND ++ A +
Sbjct: 176 AHQTFIPVPVHAIEQYGKAWTNPENIVVSGAYKLKTRIPNEKIVLEKNDKYYNASNVEID 235
Query: 225 APKYIVQLYVQSNDQAANMFLRGDLD----VGTYYVDIVELKKKNPNIVSWLDRPPYFPP 280
++ +VQ N A NM++ ++D V + Y+D E + +N ++R Y
Sbjct: 236 E---VIFYHVQGN-TAYNMYINDEVDFLTKVASEYLD--EARIRNDYYSHPINRVLY--- 286
Query: 281 VVPVIMYFNTKHKPLDNPLVRKAIAEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIG 340
M FNT KPLDN VR+A+ AI + K I P N+ +
Sbjct: 287 -----MAFNTTIKPLDNVKVREALTLAIDREALNK---IHLKGQSKPTRNLTPQFDHYSY 338
Query: 341 VSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAV 400
QL K DPQ A +LL EAG + G +Y +
Sbjct: 339 GKQL------KLFDPQRAQQLLAEAGYPNGAGFPTLKYKTSQR----------NGMAITA 382
Query: 401 EIVVNQL-KVIGIKVDVRKYDWGTMVSKQQAGEFDLT-MHWAGTFESDPYSVYHNLMYYK 458
E + QL K++ I +++ +W T +S + G + ++ M W G + DP + +L +
Sbjct: 383 EFLQEQLKKILNINIEIEIEEWNTFLSSRSTGNYQMSFMGWTGDY-PDPLTFLESLFTTE 441
Query: 459 NETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWL-KDVSAVPLYMGTL 517
N+ G Y N K + L+++ D ++ E+LR+ I + +D PL +
Sbjct: 442 NQ----GFGAYGYSNKKYDNLIEQSNFIKDPIQRQEILRQAEAIIVEEDFPVAPLSILKS 497
Query: 518 FYEANTQYWANW-PN 531
+Y W W PN
Sbjct: 498 YYLFRHDKWTGWTPN 512
>pir||A38447 oligopeptide ABC transport system substrate-binding protein oppA
precursor - Bacillus subtilis >gi|143603|gb|AAA62687.1|
(M57689) sporulation protein [Bacillus subtilis]
>gi|2633497|emb|CAB13000.1| (Z99110) oligopeptide ABC
transporter (binding protein) [Bacillus subtilis]
Length = 545
Score = 103 bits (254), Expect = 7e-21
Identities = 118/478 (24%), Positives = 209/478 (43%), Gaps = 70/478 (14%)
Query: 93 LREGTKWQDGKPLTAEDVKFSFEYYEKVGLKNWSEYGLREIK----------VVDDRTIQ 142
+R+G KW +G P+TA+D ++++++ ++ Y L IK +DD ++
Sbjct: 104 IRDGVKWSNGDPVTAQDFEYAWKWALDPNNESQYAYQLYYIKGAEAANTGKGSLDDVAVK 163
Query: 143 FVFEKTPNVWAWRNQLYRVLILPEHVF----KNIDPKNVKTMTFLGDEQKYLVGSGPYKL 198
V +KT V Y + + + K I KN K T GD+ V +GP+K+
Sbjct: 164 AVNDKTLKVELNNPTPYFTELTAFYTYMPINKKIAEKNKKWNTNAGDDY---VSNGPFKM 220
Query: 199 YKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLD-----VGT 253
+ND +W L K I + + +N+ F G+LD +G
Sbjct: 221 TAWKHSGSITLEKNDQYWDKDKVKL---KKIDMVMINNNNTELKKFQAGELDWAGMPLGQ 277
Query: 254 YYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMY-FNTKHKPLDNPLVRKAIAEAICPAQ 312
+ + KK+ ++ + P+ V Y FNT+ KPLDN +RKA+ ++
Sbjct: 278 LPTESLPTLKKDGSL--------HVEPIAGVYWYKFNTEAKPLDNVNIRKALTYSLDRQS 329
Query: 313 IVK---QGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKD 369
IVK QG +P + MK +++ KE +K D + A + L E G+K+
Sbjct: 330 IVKNVTQG--EQIPAMAAVPPTMKGFEDN-------KEGYFKDNDVKTAKEYL-EKGLKE 379
Query: 370 TDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQ 429
+ + + L++ + QAV+ + K +G+ V++ +W + K
Sbjct: 380 MGLS--KASDLPKIKLSYNTDDAHAKIAQAVQEMWK--KNLGVDVELDNSEWNVYIDKLH 435
Query: 430 AGEFDL-TMHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTAD 488
+ ++ + M W G F +DP + + L KN GG N + NP+ +LL++ D
Sbjct: 436 SQDYQIGRMGWLGDF-NDPIN-FLELFRDKN----GGNNDTGWENPEFKKLLNQSQTETD 489
Query: 489 EAKQVELLRELTEIWLKDVSAVPLYMGTLFYEANTQYWANWPNEKNPTGVPIFWPGFG 546
+ K+ ELL++ I++ ++ P+Y Y W ++N GV PG G
Sbjct: 490 KTKRAELLKKAEGIFIDEMPVAPIYF----------YTDTWVQDENLKGV--IMPGTG 535
>sp|P42061|APPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN APPA PRECURSOR >gi|2126888|pir||I40545
oligopeptide ABC transporter (oligopeptide-binding
protein) appA - Bacillus subtilis
>gi|677945|gb|AAA62358.1| (U20909) AppA [Bacillus
subtilis] >gi|2633492|emb|CAB12995.1| (Z99110)
oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus subtilis]
Length = 543
Score = 103 bits (254), Expect = 7e-21
Identities = 112/446 (25%), Positives = 195/446 (43%), Gaps = 48/446 (10%)
Query: 89 FEVKLREGTKWQDGKPLTAEDVKFSFEY---YEKVGLKNWSEYGLREIKVVDDRTIQFVF 145
++VK+++G K+ DGK LTA+DV F++ + G + + L+ ++ D + F
Sbjct: 105 YDVKIKKGVKFHDGKELTADDVVFTYSVPLSKDYKGERGSTYEMLKSVEKKGDYEVLFKL 164
Query: 146 E-KTPNVWAWRNQLYRVLILPEHVFKNIDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQ 204
+ K N + N L ILP+H+ N+ +++ F +K +GSGP+K +
Sbjct: 165 KYKDGNF--YNNALDSTAILPKHILGNVPIADLEENEF---NRKKPIGSGPFKFKEWKQG 219
Query: 205 QKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKKK 264
Q NDD+ + G P + + + A GD++ + +K
Sbjct: 220 QYIKLEANDDY----FEGRPYLDTVTYKVIPDANAAEAQLQAGDINFFNVPATDYKTAEK 275
Query: 265 NPNIVSWLDRPPYFPPVVPVIMYFNTKHKPLDNPLVRKAIAEAICPAQIVKQ-----GPI 319
N+ D + V + +N K++ + VR+A+ A+ IV Q G +
Sbjct: 276 FNNLKIVTDLALSY-----VYIGWNEKNELFKDKKVRQALTTALDRESIVSQVLDGDGEV 330
Query: 320 SDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREYN 379
+ +P ++PL SW + EY K A ++L EAG KDT+GDG + +
Sbjct: 331 AYIP-ESPL-----SWNYPKDIDVPKFEYNEK-----KAKQMLAEAGWKDTNGDGILDKD 379
Query: 380 GKDLVLTFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFD---LT 436
GK T +V QLK IGI+V + +W +V + +D +
Sbjct: 380 GKKFSFTLKTNQGNKVREDIAVVVQEQLKKIGIEVKTQIVEWSALVEQMNPPNWDFDAMV 439
Query: 437 MHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELL 496
M W+ + D Y ++H+ K G N+ Y N +A++L+ + AK+ + KQ
Sbjct: 440 MGWSLSTFPDQYDIFHSSQI------KKGLNYVWYKNAEADKLMKD-AKSISDRKQYS-- 490
Query: 497 RELTEIWLKDVSAVPLYMGTLFYEAN 522
+E +I+ K P L+Y N
Sbjct: 491 KEYEQIYQKIAEDQPYTF--LYYPNN 514
>gb|AAK43144.1| ABC transporter, binding protein [Sulfolobus solfataricus]
Length = 710
Score = 102 bits (253), Expect = 9e-21
Identities = 143/649 (22%), Positives = 243/649 (37%), Gaps = 95/649 (14%)
Query: 58 LVFEPLFQLNFMKTELVPWLAEYGKWVSSNVFEVKLREGTKWQ---------------DG 102
L++EPL +N + +++PWLA W + + V L GTK Q DG
Sbjct: 68 LIYEPLALVNSLSGQIIPWLAT--NWTFTTGY-VNLPNGTKVQTLALILYLRHDVYFTDG 124
Query: 103 KPLTAEDVKFSFEYYEKVGLKNWSEYGLREIKVVDDRTIQFVFEK--TPNV-------W- 152
P A V ++ + +S + + +++ ++ VF+ TP V W
Sbjct: 125 TPFNATAVWYTLALEQAYPQLGYSANQIANMTIINPYELEIVFKPGVTPMVLYTILEQWP 184
Query: 153 ---AWRNQLYRVLILPEHVFKNIDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIF 209
A +++ V LP + ++ K T+ +G+GPY LY PQ+ +
Sbjct: 185 VDPAQWGKIFPVEQLPNGTYVGLN-KTGNPFTYPNTNP---IGTGPYMLYSFSPQE-IVL 239
Query: 210 IRNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLD-VGTYYVDIVE-LKKKNPN 267
+ N +W G P KY++ SN QA G + G + +I + K+P
Sbjct: 240 VANPHYWMP---GEPRIKYLLYPSYPSNVQADTALNNGQITWAGLFEPNIQQQFVAKDP- 295
Query: 268 IVSWLDRPPYFPPVVPVIMYFNTKHKPLDNPLVRKAIAEAICPAQIVKQGPIS-DLPDQT 326
L YF P P ++ N PL +P++R+AI+ AI I G + P T
Sbjct: 296 ----LHYHYYFAPGFPTMLTLNNLKWPLSDPVLRQAISLAINRTAIYYLGEYGYEPPATT 351
Query: 327 PLGNIMKSWKE-KIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREYNGKDLVL 385
PL + + V QL +++ + A +LL+ G K +G +
Sbjct: 352 PLPLPPQQLQYINSSVLQLAEQFAPPQGNVTAALQLLESHGYKLVNGQLITPNGTAVPAM 411
Query: 386 TFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFDLTMHW---AGT 442
T +DW + ++ LK IGI V+V+ + T + + G + + + W +G
Sbjct: 412 TIITVAGWTDWDADLTLIAQDLKQIGITVEVQTPPFTTWYNYMETGNYWMGLMWDLISGP 471
Query: 443 FESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANEL------LDELAKTA------DEA 490
P S Y Y+ + + YYN + L ++L A ++
Sbjct: 472 TPIQPLSGY-LYGYWNSPGNITPIGNSTYYNIERFNLSIIHPTFEQLVNWANGNFSINDN 530
Query: 491 KQVELLRELTEIWLKDVSAVPLYMGTLFYEANTQYWANWPNEKN---------------- 534
++ +L +W+K + ++ L G +YE WP ++N
Sbjct: 531 AYYSIVNKLAALWIKYMPSIALVYGAEWYEYVNNTVTGWPTQQNYYWPAPPWTSLPSTPL 590
Query: 535 ---------PTGVPIFWPGF-----GTWGTAL-AFLSVRPAKAIGPTTVTQTVEKTQTVE 579
VP W + +W T+ F+ TT T + T T
Sbjct: 591 PVVLALHLVNQSVPEPWWYYTSQVPSSWYTSNDPFVYQTTTTTTTSTTTTTSTTTTSTTT 650
Query: 580 KTQTVEKTQTVEKTQTIEKTVEKTVTQTKGGICGPALIIALAAIPLVAV 628
T T T T T TVT T L +A + ++ V
Sbjct: 651 STVTTTSVSTTTSVSTSVSTTTATVTTTVTSSSNTTLYAIIAVVVIIIV 699
>pir||C70425 transporter (extracellular solute binding protein family 5) -
Aquifex aeolicus >gi|2983834|gb|AAC07389.1| (AE000740)
transporter (extracellular solute binding protein family
5) [Aquifex aeolicus]
Length = 584
Score = 102 bits (253), Expect = 9e-21
Identities = 137/520 (26%), Positives = 228/520 (43%), Gaps = 52/520 (10%)
Query: 18 IGIVSAAEELPRE---QTLYTANSSPPTNANPVYG--SNIIPIAGLVFEPLFQLNFMKTE 72
+ I A E+P+E + L SS P NP ++ + G +F L +L+ +
Sbjct: 37 LDIQKAFPEIPQEISKRVLRFHLSSDPKTLNPALAMETSSTAVIGDLFSGLTKLDLKTMK 96
Query: 73 LVPWLAE-YGKWVSSNVFEVKLREGTKWQDGKPLTAEDVKFSF-EYY--EKVGLKNWSEY 128
+ P LA+ + V+ LR+ KW DGKP TA+DV F+F E Y +K+ +
Sbjct: 97 VKPNLAQGWEVREGGKVWIFYLRKDVKWSDGKPFTADDVVFTFNEVYLNDKIPTTARDIF 156
Query: 129 GLR----EIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKN-IDPKNVKTMTFL 183
++ +++ +D+ T++F+ P +A V ILP+H +N + T +
Sbjct: 157 TIKGKKIKVRKIDEYTVEFIL---PEPFAPFLNSLGVEILPKHKLENYVKEGTFSTAWNV 213
Query: 184 GDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFG--LPAPKYIVQLYVQSNDQAA 241
K +VG+G YK+ + V Q+ ++ N ++ G LP K V + + D A
Sbjct: 214 NTNPKEIVGTGAYKIEEYVKGQRVVYRANPYYYEKDENGNRLPYIKEKVGVIIPDPDTAL 273
Query: 242 NMFLRGDLD-VGTYYVDIVEL--KKKNPNIVSWLDRPPYFPPVV----PVIMYFNTKHKP 294
F+ G++D +G D++ L +K +V L P +V P K K
Sbjct: 274 LKFVNGEIDYIGVRAQDLLFLANQKDKDFVVYDLGATPSTTFLVFNQNPNAKIPKYKIKW 333
Query: 295 LDNPLVRKAIAEAICPAQIVK---QGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWK 351
+ R AI+ AI IVK G P TP+ + + E+ + E+ K
Sbjct: 334 FRDRTFRIAISHAIDREGIVKLVYNGLAQ--PLYTPITPANRPYYEESYYPKF--EFNLK 389
Query: 352 YCDPQDAAKLLDEAGIKDTDGDG-WREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLKVI 410
A +LL+ G KD DGDG + G DL T + I+ L+ I
Sbjct: 390 -----KARELLESIGFKDRDGDGILEDPEGHDLEFTLITNAGNKEREMMGAIIKEDLRKI 444
Query: 411 GIKVDVRKYDWGTMVSKQQAGEFDLTMHWAG-TFESDPY---SVYHNL----MYYKNETD 462
GIKV + D+ T+VSK + ++ G T DP+ +V+H+ M+Y +
Sbjct: 445 GIKVHFQPIDFNTLVSKLTSPPYEWEAVIIGLTGSIDPHFGRNVWHSSGSLHMWYPRQKQ 504
Query: 463 KGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEI 502
+ K +EL+D+ A + K+V++ RE+ I
Sbjct: 505 P-----STEWEKKVDELIDKGATELNYEKRVQIYREMFRI 539
>sp|P24141|OPPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN OPPA PRECURSOR
>gi|40005|emb|CAA39787.1| (X56347) OppA [Bacillus
subtilis]
Length = 545
Score = 101 bits (250), Expect = 2e-20
Identities = 117/478 (24%), Positives = 209/478 (43%), Gaps = 70/478 (14%)
Query: 93 LREGTKWQDGKPLTAEDVKFSFEYYEKVGLKNWSEYGLREIK----------VVDDRTIQ 142
+R+G KW +G P+TA+D ++++++ ++ Y L IK +DD ++
Sbjct: 104 IRDGVKWSNGDPVTAQDFEYAWKWALDPNNESQYAYQLYYIKGAEAANTGKGSLDDVAVK 163
Query: 143 FVFEKTPNVWAWRNQLYRVLILPEHVF----KNIDPKNVKTMTFLGDEQKYLVGSGPYKL 198
V +KT V Y + + + + I KN K T GD+ V +GP+K+
Sbjct: 164 AVNDKTLKVELNNPTPYFTELTAFYTYMPINEKIAEKNKKWNTNAGDDY---VSNGPFKM 220
Query: 199 YKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLD-----VGT 253
+ND +W L K I + + +N+ F G+LD +G
Sbjct: 221 TAWKHSGSITLEKNDQYWDKDKVKL---KKIDMVMINNNNTELKKFQAGELDWAGMPLGQ 277
Query: 254 YYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMY-FNTKHKPLDNPLVRKAIAEAICPAQ 312
+ + KK+ ++ + P+ V Y FNT+ KPLDN +RKA+ ++
Sbjct: 278 LPTESLPTLKKDGSL--------HVEPIAGVYWYKFNTEAKPLDNVNIRKALTYSLDRQS 329
Query: 313 IVK---QGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKD 369
IVK QG +P + MK +++ KE +K D + A + L E G+K+
Sbjct: 330 IVKNVTQG--EQMPAMAAVPPTMKGFEDN-------KEGYFKDNDVKTAKEYL-EKGLKE 379
Query: 370 TDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQ 429
+ + + L++ + QAV+ + K +G+ V++ +W + K
Sbjct: 380 MGLS--KASDLPKIKLSYNTDDAHAKIAQAVQEMWK--KNLGVDVELDNSEWNVYIDKLH 435
Query: 430 AGEFDL-TMHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTAD 488
+ ++ + M W G F +DP + + L KN GG N + NP+ +LL++ D
Sbjct: 436 SQDYQIGRMGWLGDF-NDPIN-FLELFRDKN----GGNNDTGWENPEFKKLLNQSQTETD 489
Query: 489 EAKQVELLRELTEIWLKDVSAVPLYMGTLFYEANTQYWANWPNEKNPTGVPIFWPGFG 546
+ K+ ELL++ I++ ++ P+Y Y W ++N GV PG G
Sbjct: 490 KTKRAELLKKAEGIFIDEMPVAPIYF----------YTDTWVQDENLKGV--IMPGTG 535
>pir||C75202 dipeptide abc transporter, dipeptide-binding protein PAB0091 -
Pyrococcus abyssi (strain Orsay)
>gi|5457575|emb|CAB49066.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 556
Score = 98.7 bits (242), Expect = 2e-19
Identities = 132/516 (25%), Positives = 217/516 (41%), Gaps = 63/516 (12%)
Query: 29 REQTLYTANSSPPTNANPVYGSNIIPIAGLVFEPLFQLNFMKTELVPWLAEYGKWVSSN- 87
+ + L + P +P + + GLVF L + +++P LAE W S
Sbjct: 50 KHKVLVIGYTRDPDTLDPQKSTWVDITTGLVFATLINMG-TNGKIIPGLAE--SWEISED 106
Query: 88 --VFEVKLREGTKWQDGKPLTAEDVKFSFEYYEKVGLKNWSEY----GLREIKVVDDRTI 141
V LR+G + G P+TAEDVKF F+ ++ L+E+KV+DD T+
Sbjct: 107 GKVITFHLRKGIRDALGNPITAEDVKFVFDRLMNPETRSPMAPLVLGPLKEVKVIDDYTV 166
Query: 142 QFVFEKTPNVWAWRNQLYRVLILPEHVFKNIDPKNVKTMTFLGDEQKYLVGSGPYKLYKV 201
Q ++ K P A + + P +F + V + F + G+GPY + K
Sbjct: 167 QLIY-KEPYGPALP---FLATMPPLGIFSKEFYEKVGPVQF----GQTPAGTGPYYVVKW 218
Query: 202 VPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVEL 261
V + RN +W Y PA K Y+++ +R + + + + E
Sbjct: 219 VRGAYIEYKRNP-YWKREYRPDPALKNPGPPYIET--------IRFRI-IKEPFTLVSEF 268
Query: 262 KKKNPNIVSWLDRPPYF---------PPVVPVIMY------FNTKHKPLDNPLVRKAIAE 306
K N +++ LD PP F ++P + Y FN + P ++ VR+AI
Sbjct: 269 KAGNIHVL--LDVPPEFYKDLANDPNVEMIPALEYVLHYIGFNCQKYPFNDTRVRQAINM 326
Query: 307 AICPAQIVKQGPIS-DLPDQTPLGNIMKSWKEKIGVSQLIKEYG-WKY-CDPQDAAKLLD 363
AI +I+K +P PL M + EK+ +EY KY DP+ A +LL
Sbjct: 327 AINREEIIKYALEGLAVPVHGPLVPSMNGYSEKM------EEYAKQKYPYDPEKAKQLLA 380
Query: 364 EAGIKDTDGDGWRE-YNGKDLVLTFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYDWG 422
EAG D DGDG E NG ++ + + +I+ QL IGIKV +R +
Sbjct: 381 EAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVKIRTVEES 440
Query: 423 TMVSKQQAGEFDLTMHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDE 482
+ G + + G ++ ++ Y + KG +Y +E LD+
Sbjct: 441 SFTDLVSKGLHQMYLFRYGLQDAQ-------ILLYMFHSKKGVKRMF-FYRKDLDEALDK 492
Query: 483 LAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLF 518
+ T D ++ + + E +I + VPLY +F
Sbjct: 493 MGTTVDPEERQKYIEEAEKILIDGAPMVPLYARKVF 528
>pir||G70140 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein (oppA-1) homolog - Lyme disease spirochete
>gi|2688228|gb|AAC66708.1| (AE001139) oligopeptide ABC
transporter, periplasmic oligopeptide-binding protein
(oppA-1) [Borrelia burgdorferi]
Length = 529
Score = 95.2 bits (233), Expect = 2e-18
Identities = 138/562 (24%), Positives = 228/562 (40%), Gaps = 104/562 (18%)
Query: 12 LFFLSTIGIVSAAEELPREQTLY-TANSSPPTNANP-----VYGSNIIPIAGLVFEPLFQ 65
L S I +S A+ +E+ ++ +N S P++ +P +YGSNII +F L
Sbjct: 16 LIIFSLIACISNAK---KEKIVFRVSNLSEPSSLDPQLSTDLYGSNIIT---NLFLGLAV 69
Query: 66 LNFMKTELVPWLAEYGKWVSSN---VFEVKLREGTKWQDGKPLTAEDVKFS--------- 113
+ + P LA+ W S ++ LRE W DG +TAE++K S
Sbjct: 70 KDSQTGKYKPGLAK--SWNISEDGIIYTFNLREDIVWSDGVAITAEEIKKSYLRILNKKT 127
Query: 114 ---FEYYEKVGLKNWSEY-------GLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLI 163
+ K +KN EY IK +D +T++ + +
Sbjct: 128 AAMYANLIKSTIKNAQEYFDETVPESELGIKAIDSKTLEITLTSPKPYFPDMLTHSAYIP 187
Query: 164 LPEHVFKN-----IDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGA 218
+P H+ + +P+N+ V SG YKL + K + +N+ ++ A
Sbjct: 188 VPMHIVEKYGENWTNPENI-------------VVSGAYKLKERSINDKIVIEKNEKYYNA 234
Query: 219 RYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYF 278
+ + V Y A NM++ G+L D ++ +KN N+ R Y+
Sbjct: 235 KNVEIDE----VIFYPTEGSVAYNMYINGEL-------DFLQGAEKN-NLEEIKIRDDYY 282
Query: 279 PPVVPVIMY--FNTKHKPLDNPLVRKAIAEAI---CPAQIVKQGPISDLPDQTPLGNIMK 333
+ + Y FNT KPLDN VR+AI+ AI ++V +G + TP +
Sbjct: 283 SGLKNGMAYIAFNTTIKPLDNLKVRQAISLAIDRETLTKVVLKGSSDPTRNLTPKFDDYS 342
Query: 334 SWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREYNGKDLVLTFAACGPC 393
K I DP++A KLL EAG D G +Y + T A
Sbjct: 343 YGKNLI------------LFDPENAKKLLAEAGYPDGKGFPTLKYKISEGRPTTA----- 385
Query: 394 SDWMQAVEIVVNQL-KVIGIKVDVRKYDWGTMVSKQQAGEFDL-TMHWAGTFESDPYSVY 451
E + Q K++ I +++ +W T + ++ G + + ++ W G + DP +
Sbjct: 386 -------EFLQEQFKKILNINLEIENEEWTTFLGSRRTGNYQMSSVGWIGDY-FDPLTFL 437
Query: 452 HNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWL-KDVSAV 510
+L + E GA Y N + + L+ + D K+ ++LR+ EI KD
Sbjct: 438 DSL--FTTENHFLGAY--KYSNKEYDALIKKSNFELDPIKRQDILRQAEEIIAEKDFPMA 493
Query: 511 PLYMGTLFYEANTQYWANW-PN 531
PLY+ Y W W PN
Sbjct: 494 PLYIPKSHYLFRNDKWTGWVPN 515
>gb|AAC34990.1| (AF043071) oligopeptide permease periplasmic binding protein
[Borrelia burgdorferi]
Length = 523
Score = 94.4 bits (231), Expect = 3e-18
Identities = 136/564 (24%), Positives = 227/564 (40%), Gaps = 108/564 (19%)
Query: 12 LFFLSTIGIVSAAEELPREQTLY-TANSSPPTNANP-----VYGSNIIPIAGLVFEPLFQ 65
L S I +S A+ +E+ ++ +N S P++ +P +YGSNII +F L
Sbjct: 10 LIIFSLIACISNAK---KEKIVFRVSNLSEPSSLDPQLSTDLYGSNIIT---NLFLGLAV 63
Query: 66 LNFMKTELVPWLAEYGKWVSSN---VFEVKLREGTKWQDGKPLTAEDVKFS--------- 113
+ + P LA+ W S ++ LRE W DG +TAE++K S
Sbjct: 64 KDSQTGKYKPGLAK--SWNISEDGIIYTFNLREDIVWSDGVAITAEEIKKSYLRILNKKT 121
Query: 114 ---FEYYEKVGLKNWSEY-------GLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLI 163
+ K +KN EY IK +D +T++ + +
Sbjct: 122 AAMYANLIKSTIKNAQEYFDETVPESELGIKAIDSKTLEITLTSPKPYFPDMLTHSAYIP 181
Query: 164 LPEHVFKN-----IDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGA 218
+P H+ + +P+N+ V SG YKL + K + +N+ ++ A
Sbjct: 182 VPMHIVEKYGENWTNPENI-------------VVSGAYKLKERSINDKIVIEKNEKYYNA 228
Query: 219 RYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYF 278
+ + V Y A NM++ G+L D ++ +KN N+ R Y+
Sbjct: 229 KNVEIDE----VIFYPTEGSVAYNMYINGEL-------DFLQGAEKN-NLEEIKIRDDYY 276
Query: 279 PPVVPVIMY--FNTKHKPLDNPLVRKAIAEAI---CPAQIVKQGPISDLPDQTPLGNIMK 333
+ + Y FNT KPLDN VR+AI+ AI ++V +G + TP +
Sbjct: 277 SGLKNGMAYIAFNTTIKPLDNLKVRQAISLAIDRETLTKVVLKGSSDPTRNLTPKFDDYS 336
Query: 334 SWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREY---NGKDLVLTFAAC 390
K I DP++A KLL EAG D G +Y G+ + F
Sbjct: 337 YGKNLI------------LFDPENAKKLLAEAGYPDGKGFPTLKYKISEGRPITAEF--- 381
Query: 391 GPCSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFDL-TMHWAGTFESDPYS 449
+ K++ I +++ +W T + ++ G + + ++ W G + DP +
Sbjct: 382 -----------LQEQFKKILNINLEIENEEWTTFLGSRRTGNYQMSSVGWIGDY-FDPLT 429
Query: 450 VYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWL-KDVS 508
+L + E GA Y N + + L+ + D K+ ++LR+ EI KD
Sbjct: 430 FLDSL--FTTENHFLGAY--KYSNKEYDALIKKSNFELDPIKRQDILRQAEEIIAEKDFP 485
Query: 509 AVPLYMGTLFYEANTQYWANW-PN 531
PLY+ Y W W PN
Sbjct: 486 MAPLYIPKSHYLFRNDKWTGWVPN 509
>gb|AAB97671.1| (AF005657) plasminogen binding protein [Borrelia burgdorferi]
Length = 523
Score = 94.0 bits (230), Expect = 5e-18
Identities = 137/562 (24%), Positives = 228/562 (40%), Gaps = 104/562 (18%)
Query: 12 LFFLSTIGIVSAAEELPREQTLY-TANSSPPTNANP-----VYGSNIIPIAGLVFEPLFQ 65
L S I +S A+ +E+ ++ +N S P++ +P +YGSNII +F L
Sbjct: 10 LIIFSLIACISNAK---KEKIVFRVSNLSEPSSLDPQLSTDLYGSNIIT---NLFLGLAA 63
Query: 66 LNFMKTELVPWLAEYGKWVSSN---VFEVKLREGTKWQDGKPLTAEDVKFS--------- 113
+ + P LA+ W S ++ LRE W DG +TAE++K S
Sbjct: 64 KDSQTGKYKPGLAK--SWNISEDGIIYTFNLREDIVWSDGVAITAEEIKKSYLRILNKKT 121
Query: 114 ---FEYYEKVGLKNWSEY-------GLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLI 163
+ K +KN EY IK +D +T++ + +
Sbjct: 122 AAMYANLIKSTIKNAQEYFDETVPESELGIKAIDSKTLEITLTSPKPYFPDMLTHSAYIP 181
Query: 164 LPEHVFKN-----IDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGA 218
+P H+ + +P+N+ V SG YKL + K + +N+ ++ A
Sbjct: 182 VPMHIVEKYGENWTNPENI-------------VVSGAYKLKERSINDKIVIEKNEKYYNA 228
Query: 219 RYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYF 278
+ + V Y A NM++ G+L D ++ +KN N+ R Y+
Sbjct: 229 KNVEIDE----VIFYPTEGSVAYNMYINGEL-------DFLQGAEKN-NLEEIKIRDDYY 276
Query: 279 PPVVPVIMY--FNTKHKPLDNPLVRKAIAEAI---CPAQIVKQGPISDLPDQTPLGNIMK 333
+ + Y FNT KPLDN VR+AI+ AI ++V +G + TP +
Sbjct: 277 SGLKNGMAYIAFNTTIKPLDNLKVRQAISLAIDRETLTKVVLKGSSDPTRNLTPKFDDYS 336
Query: 334 SWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREYNGKDLVLTFAACGPC 393
K I DP++A KLL EAG D G ++ + T A
Sbjct: 337 YGKNLI------------LFDPENAKKLLAEAGYPDGKGFPTLKFKISEGRPTTA----- 379
Query: 394 SDWMQAVEIVVNQL-KVIGIKVDVRKYDWGTMVSKQQAGEFDL-TMHWAGTFESDPYSVY 451
E + Q K++ I +++ +W T + ++ G + + ++ W G + DP +
Sbjct: 380 -------EFLQEQFKKILNINLEIENEEWTTFLGSRRTGNYQMSSVGWIGDY-FDPLTFL 431
Query: 452 HNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWL-KDVSAV 510
+L + E GA Y N + + L+ + D K+ ++LR+ EI KD
Sbjct: 432 DSL--FTTENHFLGAY--KYSNKEYDALIKKSNFELDPIKRQDILRQAEEIIAEKDFPMA 487
Query: 511 PLYMGTLFYEANTQYWANW-PN 531
PLY+ Y W W PN
Sbjct: 488 PLYIPKSHYLFRNDKWTGWVPN 509
>pir||T44635 dipeptide transporter protein dppA [imported] - Bacillus firmus
(fragment) >gi|1813495|gb|AAB41688.1| (U64514) dipeptide
transporter protein dppA [Bacillus firmus]
Length = 551
Score = 92.8 bits (227), Expect = 1e-17
Identities = 128/516 (24%), Positives = 205/516 (38%), Gaps = 98/516 (18%)
Query: 59 VFEPLFQLNFMKTELVPWLAEYGKWVSSNV-FEVKLREGTKWQDGKPLTAEDVKFSFEYY 117
++E L + + E+ P LA + S + F L EG K+ DG AE VK +FE +
Sbjct: 79 IYETLIEFDRDSFEIGPGLAHDWEVDDSGLRFVFHLEEGVKFHDGTDFNAEAVKVNFERW 138
Query: 118 EKVGLK--------NWSEYG-------------LREIKVVDDRTIQFVFEKTPNVWAWRN 156
K +S YG + EI V+ D I+FV + +
Sbjct: 139 ADPEHKYAFLDEGYTYSVYGTQFGGYKGDEGHVIEEINVLGDYEIEFVLNQPLGSFLQNM 198
Query: 157 QLYRVLILPEHVFK------NIDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFI 210
+ I F+ N +P VG+GP+K I
Sbjct: 199 GMSYFAITSPQAFEEHGSAINENP----------------VGTGPFKFVSWSRDDSIILE 242
Query: 211 RNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVS 270
+N+D+W GLP ++ + N G +D+ + NP+ V+
Sbjct: 243 KNEDYWKE---GLPKLDRVIFQVIPDNSARLTALRSGQIDI---------MDGLNPDDVA 290
Query: 271 WL---DRPPYFPPVVPVIMY--FNTKHKPLDNPLVRKAIAEAICPAQIVKQGPISDLPDQ 325
+ D F I Y F+ +P ++P+VR+A AI K+G I+ L
Sbjct: 291 QIEGDDSLQVFERTTNNIGYLGFHVDKEPFNDPVVRRAFNHAID-----KEGLIAIL--- 342
Query: 326 TPLGNIMKSWKEKI-----GVSQLIKEYGWKYCDPQDAAKLLDEAGIKDT-DGDGWREYN 379
G + ++ K I G + I EY + DP+ A +LL EAGI+D D W
Sbjct: 343 --YGGLAETAKNTIPPGYLGYNDAIDEYSY---DPELAKELLAEAGIEDGFTFDLW---- 393
Query: 380 GKDLVLTFAACGP-CSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFDLTM- 437
T P D +A E + L +GI ++ +W T + + + G+ D+ M
Sbjct: 394 ------TMPVARPYMPDPQRAAEAIQANLADVGITANIVTKEWATYLEETEQGKHDVFML 447
Query: 438 HWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLR 497
W+G DP + NL++ + GG N Y N + NELL + D + EL
Sbjct: 448 GWSGV-NGDPDYFFSNLLH--GDAIPGG-NRSFYSNEEVNELLVQAKTEVDFDVRAELYE 503
Query: 498 ELTEIWLKDVSAVPLY--MGTLFYEANTQYWANWPN 531
++ E+ +D VPL + TL +N + + P+
Sbjct: 504 QVQELIHEDAPMVPLVHSIPTLAGSSNVKNYVPHPS 539
>gb|AAC46282.1| (AF000366) oligopeptide permease homolog AI [Borrelia burgdorferi]
Length = 523
Score = 91.7 bits (224), Expect = 2e-17
Identities = 137/562 (24%), Positives = 227/562 (40%), Gaps = 104/562 (18%)
Query: 12 LFFLSTIGIVSAAEELPREQTLY-TANSSPPTNANPV-----YGSNIIPIAGLVFEPLFQ 65
L S I +S A+ +E+ ++ +N S P++ +P YGSNII +F L
Sbjct: 10 LIIFSLIACISNAK---KEKIVFRVSNLSEPSSLDPQLSTDPYGSNIIT---NLFLGLAV 63
Query: 66 LNFMKTELVPWLAEYGKWVSSN---VFEVKLREGTKWQDGKPLTAEDVKFS--------- 113
+ + P LA+ W S ++ LRE W DG +TAE++K S
Sbjct: 64 KDSQTGKYKPGLAK--SWNISEDGIIYTFNLREDIVWSDGVAITAEEIKKSYLRILNKKT 121
Query: 114 ---FEYYEKVGLKNWSEY-------GLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLI 163
+ K +KN EY IK +D +T++ + +
Sbjct: 122 AAMYANLIKSTIKNAQEYFDETVPESELGIKAIDSKTLEITLTSPKPYFPDMLTHSAYIP 181
Query: 164 LPEHVFKN-----IDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGA 218
+P H+ + +P+N+ V SG YKL + K + +N+ ++ A
Sbjct: 182 VPMHIVEQYGENWTNPENI-------------VVSGAYKLKERSINDKIVIEKNEKYYNA 228
Query: 219 RYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYF 278
+ + V Y A NM++ G+L D ++ +KN N+ R Y+
Sbjct: 229 KNVEIDE----VIFYPTEGSVAYNMYINGEL-------DFLQGAEKN-NLEEIKIRDDYY 276
Query: 279 PPVVPVIMY--FNTKHKPLDNPLVRKAIAEAI---CPAQIVKQGPISDLPDQTPLGNIMK 333
+ + Y FNT KPLDN VR+AI+ AI ++V +G + TP +
Sbjct: 277 SGLKNGMAYIAFNTTIKPLDNLKVRQAISLAIDRETLTKVVLKGSSDPTRNLTPKFDDYS 336
Query: 334 SWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREYNGKDLVLTFAACGPC 393
K I DP++A KLL EAG D G +Y + T A
Sbjct: 337 YGKNLI------------LFDPENAKKLLAEAGYPDGKGFPTLKYKISEGRPTTA----- 379
Query: 394 SDWMQAVEIVVNQL-KVIGIKVDVRKYDWGTMVSKQQAGEFDL-TMHWAGTFESDPYSVY 451
E + Q K++ I +++ +W T + ++ G + + ++ W G + +P +
Sbjct: 380 -------EFLQEQFKKILNINLEIENEEWTTFLGSRRTGNYQMSSVGWIGDY-FNPLTFL 431
Query: 452 HNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWL-KDVSAV 510
+L + E GA Y N + + L+ + D K+ ++LR+ EI KD
Sbjct: 432 DSL--FTTENHFLGAY--KYSNKEYDALIKKSNFELDPIKRRDILRQAEEIIAEKDFPMA 487
Query: 511 PLYMGTLFYEANTQYWANW-PN 531
PLY+ Y W W PN
Sbjct: 488 PLYIPKSHYLFRNDKWTGWVPN 509
>pir||F71951 periplasmic dipeptide transport substrate-binding protein -
Helicobacter pylori (strain J99)
>gi|4154808|gb|AAD05864.1| (AE001465) PERIPLASMIC
DIPEPTIDE TRANSPORT SUBSTRATE-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 546
Score = 91.3 bits (223), Expect = 3e-17
Identities = 124/484 (25%), Positives = 203/484 (41%), Gaps = 70/484 (14%)
Query: 57 GLVFEPLFQLNFMKTELVPWLAEYGKWVSSN---VFEVKLREG-----TK-WQDGKPLTA 107
G +++ L Q + TE+ P LA W S V+ LR+G TK W +A
Sbjct: 72 GNIYDTLVQFKYGTTEVEPALAT--SWEISPDGLVYTFHLRKGVYFHQTKYWNKKVEFSA 129
Query: 108 EDVKFSFE--------YYEK--VGLKNWSEYGL----REIKVVDDRTIQFVFEKTPNVWA 153
+DV FSFE YY K W G+ + I+ +DD TI+F +
Sbjct: 130 KDVLFSFERQMDKAKRYYSPGAKSYKYWEGMGMSHIIKSIEALDDYTIRFTLNGPEAPFL 189
Query: 154 WRNQLYRVLILPEHVFKNIDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRND 213
+ + IL + + N K + K VG+GP+K + +K I ++N
Sbjct: 190 ANLGMDFLSILSKDYADYLAQNNKKD-----ELAKKPVGTGPFKFFLWNKDEKIILVKNQ 244
Query: 214 DWWGARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLD 273
D+WG + + K +V+ S+ +A + + + ++ VE +K PNIV +D
Sbjct: 245 DYWGPKAY---LDKVVVRTIPNSSTRALALRTGEIMLMTGPNLNEVEQLEKLPNIV--VD 299
Query: 274 RPPYFPPVVPVIMYFNTKHKPLDNPLVRKAIAEAICPAQIVK---QGPISDLPDQTPLGN 330
R P ++ + NT+ K +NPLVR AI AI +K +G + + P
Sbjct: 300 RS---PGLIANWLSLNTQKKYFNNPLVRLAINHAINVDDYIKVIYEGFAQKMVNPFP--- 353
Query: 331 IMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREYNG-KDLVLTFAA 389
W G + IK Y + D + A +LL +AG NG K + T +
Sbjct: 354 -PTIW----GYNYNIKPYEY---DLKKAKELLKQAGYP----------NGFKTTIFTTST 395
Query: 390 CGPCSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFDLTMHWAGTFESDPYS 449
P + + L IGI V + Y+WG + + GE ++ +DP +
Sbjct: 396 RNP-----KGAVFIQASLAKIGIDVKIEVYEWGAYLKRTGLGEHEMAFAGWMADIADPDN 450
Query: 450 VYHNLMYYKNETDKGGANFGNYYNPKA-NELLDELAKTADEAKQVELLRELTEIWLKDVS 508
+ L + K G++Y A ++LL + + +D+ ++ L + EI KD
Sbjct: 451 FLYTL-WSKQAASAIPTQNGSFYKSDAFSDLLIKAKRVSDQKEREALYLKAQEIIHKDAP 509
Query: 509 AVPL 512
VPL
Sbjct: 510 YVPL 513
>sp|P23847|DPPA_ECOLI PERIPLASMIC DIPEPTIDE TRANSPORT PROTEIN PRECURSOR
(DIPEPTIDE-BINDING PROTEIN) (DBP) >gi|95763|pir||A39194
periplasmic dipeptide transport protein precursor dppA -
Escherichia coli >gi|42475|emb|CAA41090.1| (X58051)
dipeptide binding protein (DBP) [Escherichia coli]
>gi|145797|gb|AAA23707.1| (M35045) dipeptide transporter
protein [Escherichia coli] >gi|349225|gb|AAA23702.1|
(L08399) dipeptide-binding protein [Escherichia coli]
>gi|466683|gb|AAB18522.1| (U00039) dppA [Escherichia
coli] >gi|1789966|gb|AAC76569.1| (AE000431) dipeptide
transport protein [Escherichia coli K12]
Length = 535
Score = 91.3 bits (223), Expect = 3e-17
Identities = 127/556 (22%), Positives = 220/556 (38%), Gaps = 113/556 (20%)
Query: 15 LSTIGIVSAAEELPREQTLYTANSSPPTNANP-------VYGSNIIPIAGLVFEPLFQLN 67
LS + + AA + +TL + P NP Y ++ +P+ + L +
Sbjct: 15 LSLVAMTVAASV--QAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPL----YNRLVEFK 68
Query: 68 FMKTELVPWLAEYGKWVSSN---VFEVKLREGTKWQDGKP------LTAEDVKFSF---- 114
TE++P LAE KW S + LR+G KW D K L A+DV FSF
Sbjct: 69 IGTTEVIPGLAE--KWEVSEDGKTYTFHLRKGVKWHDNKEFKPTRELNADDVVFSFDRQK 126
Query: 115 --------------EYYEKVGLKNWSEYGLREIKVVDDRTIQFVFEKTPNVWAWRNQLYR 160
EY+E +GL + E+K VDD T+QFV R +
Sbjct: 127 NAQNPYHKVSGGSYEYFEGMGLPEL----ISEVKKVDDNTVQFVLT--------RPEAPF 174
Query: 161 VLILPEHVFKNIDPKNVKTMTFLGDEQKY---LVGSGPYKLYKVVPQQKAIFIRNDDWWG 217
+ L + + M G +K +G+GP++L + + + D +WG
Sbjct: 175 LADLAMDFASILSKEYADAMMKAGTPEKLDLNPIGTGPFQLQQYQKDSRIRYKAFDGYWG 234
Query: 218 ARYFGLPAPKYIVQLYVQSNDQAANM--FLRGDLDVGTYY--VDIVELKK-KNPNIVSWL 272
+ P+ ++ + D + + + V Y DI +K+ K+ N++
Sbjct: 235 TK------PQIDTLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKSINLME-- 286
Query: 273 DRPPYFPPVVPVIMYFNTKHKPLDNPLVRKAIAEAICPAQIVK---QGPISDLPDQTPLG 329
P + + +N + KPLD+ VR+A+ A+ I+K QG + P
Sbjct: 287 -----MPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSAKNLIP-- 339
Query: 330 NIMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGI-KDTDGDGW-----REYNGKDL 383
W G + +++Y + DP+ A LL EAG+ K D W R YN
Sbjct: 340 --PTMW----GYNDDVQDYTY---DPEKAKALLKEAGLEKGFSIDLWAMPVQRPYN---- 386
Query: 384 VLTFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFD-LTMHWAGT 442
+ + E++ +G++ + Y+WG + + + GE + M W G
Sbjct: 387 ----------PNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGD 436
Query: 443 FESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEI 502
DP + + L + + G+N+ + +L+ T D K+VEL ++ +
Sbjct: 437 -NGDPDNFFATL--FSCAASEQGSNYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQVV 493
Query: 503 WLKDVSAVPLYMGTLF 518
A+ + T+F
Sbjct: 494 MHDQAPALIIAHSTVF 509
>pir||B64557 dipeptide ABC transporter, periplasmic dipeptide-binding protein -
Helicobacter pylori (strain 26695)
>gi|2313396|gb|AAD07367.1| (AE000548) dipeptide ABC
transporter, periplasmic dipeptide-binding protein
(dppA) [Helicobacter pylori 26695]
Length = 549
Score = 90.9 bits (222), Expect = 4e-17
Identities = 122/483 (25%), Positives = 200/483 (41%), Gaps = 68/483 (14%)
Query: 57 GLVFEPLFQLNFMKTELVPWLAEYGKWVSSN---VFEVKLREG-----TK-WQDGKPLTA 107
G +++ L Q + TE+ P LA W S V+ LR+G TK W +A
Sbjct: 75 GNIYDTLVQFRYGTTEVEPALAT--SWDISPDGLVYTFHLRKGVYFHQTKYWNKKVEFSA 132
Query: 108 EDVKFSFE--------YYEK--VGLKNWSEYGL----REIKVVDDRTIQFVFEKTPNVWA 153
+DV FSFE YY K W G+ + I+ +DD TI+F +
Sbjct: 133 KDVLFSFERQMDKAKRYYSPGAKSYKYWEGMGMSHIIKSIEALDDYTIRFTLNGPEAPFL 192
Query: 154 WRNQLYRVLILPEHVFKNIDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRND 213
+ + IL + + N K + K +G+GP+K + +K I ++N
Sbjct: 193 ANLGMDFLSILSKDYADYLAQNNKKD-----ELAKKPIGTGPFKFFLWNKDEKIILLKNQ 247
Query: 214 DWWGARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLD 273
D+WG + + K +V+ S+ +A + + + ++ VE +K PNIV +D
Sbjct: 248 DYWGPKAY---LDKVVVRTIPNSSTRALALRTGEIMLMTGPNLNEVEQLEKVPNIV--VD 302
Query: 274 RPPYFPPVVPVIMYFNTKHKPLDNPLVRKAIAEAICPAQIVK---QGPISDLPDQTPLGN 330
+ ++ + NT+ K DNPLVR AI AI +K +G + + P
Sbjct: 303 KS---AGLLASWLSLNTQKKYFDNPLVRLAINHAINADDYIKVLYEGFAQKMVNPFP--- 356
Query: 331 IMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREYNG-KDLVLTFAA 389
W G + IK Y + D + A +LL +AG NG K + T A
Sbjct: 357 -PTIW----GYNYNIKPYEY---DLKKAKELLKQAGYP----------NGFKTTIFTTAT 398
Query: 390 CGPCSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFDLTMHWAGTFESDPYS 449
P + + L IGI V + Y+WG + + GE ++ +DP +
Sbjct: 399 RNP-----KGAVFIQASLAKIGIDVKIEVYEWGAYLKRTGLGEHEMAFSGWMADIADPDN 453
Query: 450 VYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVSA 509
+ L + + N Y N + + LL + + +D+ ++ L + EI KD
Sbjct: 454 FLYTLWSEQAASAIPTQNHSFYKNKEFSNLLIKAKRVSDQKEREALYLKAQEIIHKDAPY 513
Query: 510 VPL 512
VPL
Sbjct: 514 VPL 516
>gb|AAC34992.1| (AF043071) oligopeptide permease periplasmic binding protein
[Borrelia burgdorferi]
Length = 541
Score = 90.9 bits (222), Expect = 4e-17
Identities = 127/519 (24%), Positives = 206/519 (39%), Gaps = 109/519 (21%)
Query: 59 VFEPLFQLNFMKTELVPWLAEYGKWVSSN---VFEVKLREGTKWQDGKPLTAEDVKFSF- 114
+F L LN +L P LA+ W +S ++ LR+ W DG +TAE ++ SF
Sbjct: 67 IFSGLLTLNTKTGKLKPGLAK--NWEASKDKKTYQFYLRDNLFWSDGVEITAEGIRKSFL 124
Query: 115 -----------------------EYYEKVGLKNWSEYGLREIKVVDDRTIQFVFEKTPNV 151
EY++ G + SE G IK +D +T++
Sbjct: 125 RILNKETGSTNVDMLKSIIKNGQEYFD--GKVSDSELG---IKAIDSKTLEITLTAPKPY 179
Query: 152 WAWRNQLYRVLILPEHVFKNI-----DPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQK 206
+ Y + +P HV + P+N+ T SGP+KL K +P +K
Sbjct: 180 FLELLLHYAFMPVPVHVIEKYKGNWTSPENMVT-------------SGPFKLKKRLPNEK 226
Query: 207 AIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAA-NMFLRGDLDV--GTYYVDIV-ELK 262
IF +N+ ++ A+ L YI ND NM+ ++D + DIV E+K
Sbjct: 227 IIFEKNERYYNAKEVELDELVYI----TSDNDLTVYNMYKNNEIDAIFNSIPPDIVNEIK 282
Query: 263 KKNPNIVSWLDRPPYFPPVVPVIMY-FNTKHKPLDNPLVRKAIAEAI----CPAQIVKQG 317
L + Y + +Y FNTK KPLD+ VR+A+ AI +++ G
Sbjct: 283 ---------LQKDYYQHKSNAIYLYSFNTKIKPLDDARVREALTLAIDRETLTYKVLNDG 333
Query: 318 PISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYC--DPQDAAKLLDEAGIKDTDGDGW 375
+ L N YG K DP+ + KLL +AG
Sbjct: 334 TVPTREITPDLENY---------------NYGKKLALFDPEKSKKLLADAGYP------- 371
Query: 376 REYNGKDLVLTFAACGPCSDWMQAVEIVVNQ-LKVIGIKVDVRKYDWGTMVSKQQAGEFD 434
NGK + + + NQ K++ I + + +W + + + G F+
Sbjct: 372 ---NGKGFPMLTLKYNTNETHKKIAAFIQNQWKKILNINLMLTNENWPVLTNSRNTGNFE 428
Query: 435 LTMHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVE 494
+ DP++ Y + +N A++G Y N + ++L+ E D K+ +
Sbjct: 429 IIRVGRIGEYLDPHT-YFTIFTRENSQ---LASYG-YSNLEFDKLIRESDLEKDPIKRKQ 483
Query: 495 LLRELTEIWL-KDVSAVPLYMGTLFYEANTQYWANW-PN 531
LLR+ I + KD A P+Y+ + Y W W PN
Sbjct: 484 LLRKAESIIIEKDFPAAPIYIYSGHYLFRNDKWTGWNPN 522
>emb|CAB96044.1| (AJ250012) surface antigen [Borrelia afzelii]
Length = 528
Score = 90.9 bits (222), Expect = 4e-17
Identities = 113/475 (23%), Positives = 195/475 (40%), Gaps = 85/475 (17%)
Query: 88 VFEVKLREGTKWQDGKPLTAEDVKFSF----------EYYEKVG--LKNWSEYGLRE--- 132
V+ LRE W DG +TAE ++ S+ Y E V +KN +Y +
Sbjct: 88 VYTFTLREKIIWSDGVAITAEGIRKSYLRILNKETGSNYSEMVKSTIKNGQKYFDGQVSD 147
Query: 133 ----IKVVDDRTIQFVFEKTPNVWAWRNQLYRVLI-LPEHVFKNI-----DPKNVKTMTF 182
I+ +D++T++ E +P + +++ I +P H+ + +P+N+ T
Sbjct: 148 SELGIRAIDEKTLEITLE-SPKPYFIDMLVHQSFIPIPIHIAEKYGQSWTNPENIVT--- 203
Query: 183 LGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAAN 242
SGP+KL + +P +K + +ND ++ + + + I N A
Sbjct: 204 ----------SGPFKLKERIPNEKYVVEKNDKYYNSNQVEV---QEITFYTTNDNSTAYK 250
Query: 243 MFLRGDLDVGTYYVDIVELKKKNPNIVSWLD-RPPYFPPVVPVIMY--FNTKHKPLDNPL 299
M+ G+LD + P+++ L R Y+ V I + FNT KPLDN
Sbjct: 251 MYENGELDAIFSAIP--------PDLIKDLKLRSDYYSSAVNAIYFYAFNTHIKPLDNVK 302
Query: 300 VRKAIAEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDAA 359
VRKA+ AI + + + D TP I ++ L + +P+ A
Sbjct: 303 VRKALTLAI-DRETLTYKVLDD--GTTPTRRITPNFSSYSYAKNL------ELFNPEIAK 353
Query: 360 KLLDEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQ-LKVIGIKVDVRK 418
LL EAG NG + + E + NQ K++ I V++
Sbjct: 354 TLLAEAGYP----------NGNGFPILKLKYNTSEAHKKICEFIQNQWKKILNIDVELEN 403
Query: 419 YDWGTMVSKQQAGEFDLT-MHWAGTFESDPYSVYHNLMYYKNETDKGGANFG--NYYNPK 475
+W T ++ + G +++ W G + +DP + L + G F NY +P+
Sbjct: 404 EEWTTYLNTKSNGNYEIARAGWIGDY-ADPLTFLSILTH-------GYTQFSSHNYSSPE 455
Query: 476 ANELLDELAKTADEAKQVELLRELTEIWL-KDVSAVPLYMGTLFYEANTQYWANW 529
NEL+ + D K+ ++LR+ EI + KD P+Y+ Y W W
Sbjct: 456 YNELIKKSDLELDPIKRQDILRKAEEIIIEKDFPIAPIYIYGNSYLFRNDKWTGW 510
>pir||A70141 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein (oppA-3) homolog - Lyme disease spirochete
>gi|2688226|gb|AAC66706.1| (AE001139) oligopeptide ABC
transporter, periplasmic oligopeptide-binding protein
(oppA-3) [Borrelia burgdorferi]
Length = 541
Score = 90.5 bits (221), Expect = 5e-17
Identities = 128/515 (24%), Positives = 207/515 (39%), Gaps = 101/515 (19%)
Query: 59 VFEPLFQLNFMKTELVPWLAEYGKWVSSN---VFEVKLREGTKWQDGKPLTAEDVKFSF- 114
+F L LN +L P LA+ W +S ++ LR+ W DG +TAE ++ SF
Sbjct: 67 IFSGLLTLNTKTGKLKPGLAK--NWEASKDKKTYQFYLRDNLFWSDGVEITAEGIRKSFL 124
Query: 115 -----------------------EYYEKVGLKNWSEYGLREIKVVDDRTIQFVFEKTPNV 151
EY++ G + SE G IK +D +T++
Sbjct: 125 RILNKETGSTNVDMLKSIIKNGQEYFD--GKVSDSELG---IKAIDSKTLEITLTAPKPY 179
Query: 152 WAWRNQLYRVLILPEHVFKNI-----DPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQK 206
+ Y + +P HV + P+N+ T SGP+KL K +P +K
Sbjct: 180 FLELLLHYAFMPVPIHVIEKYKGNWTSPENMVT-------------SGPFKLKKRLPNEK 226
Query: 207 AIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAA-NMFLRGDLDV--GTYYVDIV-ELK 262
IF +N+ ++ A+ L YI ND NM+ ++D + DIV E+K
Sbjct: 227 IIFEKNERYYNAKEVELDELVYI----TSDNDLTVYNMYKNNEIDAIFNSIPPDIVNEIK 282
Query: 263 KKNPNIVSWLDRPPYFPPVVPVIMY-FNTKHKPLDNPLVRKAIAEAICPAQIVKQGPISD 321
L + Y + +Y FNTK KPLD+ VR+A+ AI + + ++D
Sbjct: 283 ---------LQKDYYQHKSNAIYLYSFNTKIKPLDDARVREALTLAI-DRETLTYKVLND 332
Query: 322 LPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYC--DPQDAAKLLDEAGIKDTDGDGWREYN 379
P I K YG K DP+ + KLL +AG N
Sbjct: 333 --GTVPTREITPDLKN--------YNYGKKLALFDPEKSKKLLADAGYP----------N 372
Query: 380 GKDLVLTFAACGPCSDWMQAVEIVVNQ-LKVIGIKVDVRKYDWGTMVSKQQAGEFDLTMH 438
GK + + + NQ K++ I + + +W + + + G F++
Sbjct: 373 GKGFPMLTLKYNTNETHKKIAAFIQNQWKKILNINLMLTNENWPVLTNSRNTGNFEIIRV 432
Query: 439 WAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRE 498
DP++ Y + +N A++G Y N + ++L+ E D K+ +LLR+
Sbjct: 433 GRIGEYLDPHT-YFTIFTRENSQ---LASYG-YSNLEFDKLIRESDLEKDPIKRKQLLRK 487
Query: 499 LTEIWL-KDVSAVPLYMGTLFYEANTQYWANW-PN 531
I + KD A P+Y+ + Y W W PN
Sbjct: 488 AESIIIEKDFPAAPIYIYSGHYLFRNDKWTGWNPN 522
>pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
>gi|1311041|pdb|1DPP|C Chain C, Dipeptide Binding
Protein Complex With Glycyl-L-Leucine
>gi|1311043|pdb|1DPP|E Chain E, Dipeptide Binding
Protein Complex With Glycyl-L-Leucine
>gi|1311045|pdb|1DPP|G Chain G, Dipeptide Binding
Protein Complex With Glycyl-L-Leucine
Length = 507
Score = 90.5 bits (221), Expect = 5e-17
Identities = 123/540 (22%), Positives = 213/540 (38%), Gaps = 111/540 (20%)
Query: 31 QTLYTANSSPPTNANP-------VYGSNIIPIAGLVFEPLFQLNFMKTELVPWLAEYGKW 83
+TL + P NP Y ++ +P+ + L + TE++P LAE KW
Sbjct: 1 KTLVYCSEGSPEGFNPQLFTSGTTYDASSVPL----YNRLVEFKIGTTEVIPGLAE--KW 54
Query: 84 VSSN---VFEVKLREGTKWQDGKP------LTAEDVKFSF------------------EY 116
S + LR+G KW D K L A+DV FSF EY
Sbjct: 55 EVSEDGKTYTFHLRKGVKWHDNKEFKPTRELNADDVVFSFDRQKNAQNPYHKVSGGSYEY 114
Query: 117 YEKVGLKNWSEYGLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKNIDPKN 176
+E +GL + E+K VDD T+QFV R + + L + +
Sbjct: 115 FEGMGLPEL----ISEVKKVDDNTVQFVLT--------RPEAPFLADLAMDFASILSKEY 162
Query: 177 VKTMTFLGDEQKY---LVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLY 233
M G +K +G+GP++L + + + D +WG + P+ ++
Sbjct: 163 ADAMMKAGTPEKLDLNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTK------PQIDTLVF 216
Query: 234 VQSNDQAANM--FLRGDLDVGTYY--VDIVELKK-KNPNIVSWLDRPPYFPPVVPVIMYF 288
+ D + + + V Y DI +K+ K+ N++ P + + +
Sbjct: 217 SITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKSINLME-------MPGLNVGYLSY 269
Query: 289 NTKHKPLDNPLVRKAIAEAICPAQIVK---QGPISDLPDQTPLGNIMKSWKEKIGVSQLI 345
N + KPLD+ VR+A+ A+ I+K QG + P W G + +
Sbjct: 270 NVQKKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSAKNLIP----PTMW----GYNDDV 321
Query: 346 KEYGWKYCDPQDAAKLLDEAGI-KDTDGDGW-----REYNGKDLVLTFAACGPCSDWMQA 399
++Y + DP+ A LL EAG+ K D W R YN + +
Sbjct: 322 QDYTY---DPEKAKALLKEAGLEKGFSIDLWAMPVQRPYN--------------PNARRM 364
Query: 400 VEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFD-LTMHWAGTFESDPYSVYHNLMYYK 458
E++ +G++ + Y+WG + + + GE + M W G DP + + L +
Sbjct: 365 AEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGD-NGDPDNFFATL--FS 421
Query: 459 NETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLF 518
+ G+N+ + +L+ T D K+VEL ++ + A+ + T+F
Sbjct: 422 CAASEQGSNYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQVVMHDQAPALIIAHSTVF 481
>pir||G69618 dipeptide ABC transporter (dipeptide-binding protein) - Bacillus
subtilis >gi|2632017|emb|CAA05576.1| (AJ002571) DppE
[Bacillus subtilis] >gi|2633650|emb|CAB13153.1| (Z99110)
dipeptide ABC transporter (dipeptide-binding protein)
[Bacillus subtilis]
Length = 549
Score = 88.9 bits (217), Expect = 2e-16
Identities = 119/522 (22%), Positives = 212/522 (39%), Gaps = 68/522 (13%)
Query: 30 EQTLYTANSSPPTNANPVYGSNIIPIAGL--VFEPLFQLNFMKTELVPWLAEYGKWVSSN 87
E+ LY N + PT+ +P G N + L + E L +L E P +AE KW S
Sbjct: 49 EKVLYVNNENEPTSFDPPIGFNNVSWQPLNNIMEGLTRLG-KDHEPEPAMAE--KWSVSK 105
Query: 88 ---VFEVKLREGTKWQDGKPLTAEDVKFSFE---------------YYEKVGLKNWSEYG 129
+ +RE KW +G P+TA D +++++ Y+ + G S G
Sbjct: 106 DNKTYTFTIRENAKWTNGDPVTAGDFEYAWKRMLDPKKGASSAFLGYFIEGGEAYNSGKG 165
Query: 130 LR-EIKVV--DDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKNIDPKNVKTMTFLGDE 186
+ ++KV DDRT++ E Q Y + ++ + ++ K K E
Sbjct: 166 KKDDVKVTAKDDRTLEVTLEAP--------QKYFLSVVSNPAYFPVNEKVDKDNPKWFAE 217
Query: 187 QKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLR 246
VG+GP+KL + ++D +W L K+ + V + MF
Sbjct: 218 SDTFVGNGPFKLTEWKHDDSITMEKSDTYWDKDTVKLDKVKWAM---VSDRNTDYQMFQS 274
Query: 247 GDLDVGTYYVDIVE--LKKKNPNIVSWLDRPPYFPPVVPVIMYFNTKHKPLDNPLVRKAI 304
G+LD ++ + L + N NIV YF FN +P N +RKA
Sbjct: 275 GELDTAYVPAELSDQLLDQDNVNIVD--QAGLYF-------YRFNVNMEPFQNENIRKAF 325
Query: 305 AEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDA-AKLLD 363
A A+ +IVK ++ ++T + + + G +E G P ++ AK L
Sbjct: 326 AMAVDQEEIVKY--VTKNNEKTAHAFVSPGFTQPDGKD--FREAGGDLIKPNESKAKQLL 381
Query: 364 EAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLK-VIGIKVDVRKYDWG 422
E G+K+ YN + + P + + E + +LK +G+ V + +W
Sbjct: 382 EKGMKE------ENYNKLPAITLTYSTKP--EHKKIAEAIQQKLKNSLGVDVKLANMEWN 433
Query: 423 TMVSKQQAGEFDLTMHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDE 482
+ Q+A +F + +DP S + N ++ G + N + ++L+ +
Sbjct: 434 VFLEDQKALKFQFSQSSFLPDYADPIS-FLEAFQTGNSMNRTG-----WANKEYDQLIKQ 487
Query: 483 LAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLFYEANTQ 524
ADE + L+ + E+ + + +P+Y + N Q
Sbjct: 488 AKNEADEKTRFSLMHQAEELLINEAPIIPVYFYNQVHLQNEQ 529
>sp|P26906|DPPE_BACSU DIPEPTIDE-BINDING PROTEIN DPPE PRECURSOR
Length = 543
Score = 88.9 bits (217), Expect = 2e-16
Identities = 119/522 (22%), Positives = 212/522 (39%), Gaps = 68/522 (13%)
Query: 30 EQTLYTANSSPPTNANPVYGSNIIPIAGL--VFEPLFQLNFMKTELVPWLAEYGKWVSSN 87
E+ LY N + PT+ +P G N + L + E L +L E P +AE KW S
Sbjct: 43 EKVLYVNNENEPTSFDPPIGFNNVSWQPLNNIMEGLTRLG-KDHEPEPAMAE--KWSVSK 99
Query: 88 ---VFEVKLREGTKWQDGKPLTAEDVKFSFE---------------YYEKVGLKNWSEYG 129
+ +RE KW +G P+TA D +++++ Y+ + G S G
Sbjct: 100 DNKTYTFTIRENAKWTNGDPVTAGDFEYAWKRMLDPKKGASSAFLGYFIEGGEAYNSGKG 159
Query: 130 LR-EIKVV--DDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKNIDPKNVKTMTFLGDE 186
+ ++KV DDRT++ E Q Y + ++ + ++ K K E
Sbjct: 160 KKDDVKVTAKDDRTLEVTLEAP--------QKYFLSVVSNPAYFPVNEKVDKDNPKWFAE 211
Query: 187 QKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLR 246
VG+GP+KL + ++D +W L K+ + V + MF
Sbjct: 212 SDTFVGNGPFKLTEWKHDDSITMEKSDTYWDKDTVKLDKVKWAM---VSDRNTDYQMFQS 268
Query: 247 GDLDVGTYYVDIVE--LKKKNPNIVSWLDRPPYFPPVVPVIMYFNTKHKPLDNPLVRKAI 304
G+LD ++ + L + N NIV YF FN +P N +RKA
Sbjct: 269 GELDTAYVPAELSDQLLDQDNVNIVD--QAGLYF-------YRFNVNMEPFQNENIRKAF 319
Query: 305 AEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDA-AKLLD 363
A A+ +IVK ++ ++T + + + G +E G P ++ AK L
Sbjct: 320 AMAVDQEEIVKY--VTKNNEKTAHAFVSPGFTQPDGKD--FREAGGDLIKPNESKAKQLL 375
Query: 364 EAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLK-VIGIKVDVRKYDWG 422
E G+K+ YN + + P + + E + +LK +G+ V + +W
Sbjct: 376 EKGMKE------ENYNKLPAITLTYSTKP--EHKKIAEAIQQKLKNSLGVDVKLANMEWN 427
Query: 423 TMVSKQQAGEFDLTMHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDE 482
+ Q+A +F + +DP S + N ++ G + N + ++L+ +
Sbjct: 428 VFLEDQKALKFQFSQSSFLPDYADPIS-FLEAFQTGNSMNRTG-----WANKEYDQLIKQ 481
Query: 483 LAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLFYEANTQ 524
ADE + L+ + E+ + + +P+Y + N Q
Sbjct: 482 AKNEADEKTRFSLMHQAEELLINEAPIIPVYFYNQVHLQNEQ 523
>gb|AAC46284.1| (AF000366) oligopeptide permease homolog AIII [Borrelia
burgdorferi]
Length = 541
Score = 88.5 bits (216), Expect = 2e-16
Identities = 127/515 (24%), Positives = 206/515 (39%), Gaps = 101/515 (19%)
Query: 59 VFEPLFQLNFMKTELVPWLAEYGKWVSSN---VFEVKLREGTKWQDGKPLTAEDVKFSF- 114
+F L LN +L P LA+ W +S ++ LR+ W DG +TAE ++ SF
Sbjct: 67 IFSGLLTLNTKTGKLKPGLAK--NWEASKDKKTYQFYLRDNLFWSDGVEITAEGIRKSFL 124
Query: 115 -----------------------EYYEKVGLKNWSEYGLREIKVVDDRTIQFVFEKTPNV 151
EY++ G + SE G IK +D +T++
Sbjct: 125 RILNKETGSTNVDMLKSIIKNGQEYFD--GKVSDSELG---IKAIDSKTLEITLTAPKPY 179
Query: 152 WAWRNQLYRVLILPEHVFKNI-----DPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQK 206
+ Y + +P HV + P+N+ T GP+KL K +P +K
Sbjct: 180 FLELLLHYAFMPVPIHVIEKYKGNWTSPENMVTC-------------GPFKLKKRLPNEK 226
Query: 207 AIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAA-NMFLRGDLDV--GTYYVDIV-ELK 262
IF +N+ ++ A+ L YI ND NM+ ++D + DIV E+K
Sbjct: 227 IIFEKNERYYNAKEVELDELVYI----TSDNDLTVYNMYKNNEIDAIFNSIPPDIVNEIK 282
Query: 263 KKNPNIVSWLDRPPYFPPVVPVIMY-FNTKHKPLDNPLVRKAIAEAICPAQIVKQGPISD 321
L + Y + +Y FNTK KPLD+ VR+A+ AI + + ++D
Sbjct: 283 ---------LQKDYYQHKSNAIYLYSFNTKIKPLDDARVREALTLAI-DRETLTYKVLND 332
Query: 322 LPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYC--DPQDAAKLLDEAGIKDTDGDGWREYN 379
P I K YG K DP+ + KLL +AG N
Sbjct: 333 --GTVPTREITPDLKN--------YNYGKKLALFDPEKSKKLLADAGYP----------N 372
Query: 380 GKDLVLTFAACGPCSDWMQAVEIVVNQ-LKVIGIKVDVRKYDWGTMVSKQQAGEFDLTMH 438
GK + + + NQ K++ I + + +W + + + G F++
Sbjct: 373 GKGFPMLTLKYNTNETHKKIAAFIQNQWKKILNINLMLTNENWPVLTNSRNTGNFEIIRV 432
Query: 439 WAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRE 498
DP++ Y + +N A++G Y N + ++L+ E D K+ +LLR+
Sbjct: 433 GRIGEYLDPHT-YFTIFTRENSQ---LASYG-YSNLEFDKLIRESDLEKDPIKRKQLLRK 487
Query: 499 LTEIWL-KDVSAVPLYMGTLFYEANTQYWANW-PN 531
I + KD A P+Y+ + Y W W PN
Sbjct: 488 AESIIIEKDFPAAPIYIYSGHYLFRNDKWTGWNPN 522
>dbj|BAB07363.1| (AP001519) dipeptide ABC transporter (dipeptide-binding protein)
[Bacillus halodurans]
Length = 557
Score = 88.5 bits (216), Expect = 2e-16
Identities = 116/487 (23%), Positives = 187/487 (37%), Gaps = 80/487 (16%)
Query: 59 VFEPLFQLNFMKTELVPWLAEYGKWVSSNV-FEVKLREGTKWQDGKPLTAEDVKFSFEYY 117
+FE L + E+ P LA + + L EG + DG P AE VK +FE +
Sbjct: 85 IFETLIEFERDSFEIGPGLAHSWDMSEDGLRYTFYLEEGVTFHDGTPFNAEAVKVNFERW 144
Query: 118 EKVGLK--------NWSEYG-------------LREIKVVDDRTIQFVFEKTPNVWAWRN 156
N+S YG + EI VV++ I+FV + +
Sbjct: 145 ADPDHPYAFVDEGYNYSVYGTQFGGFKGDPGHVIEEINVVNEYEIEFVLSEPLGSFLQNM 204
Query: 157 QLYRVLILPEHVFKNIDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWW 216
+ + F+ + + VG+GP+K + +N+++W
Sbjct: 205 GMSYFAMSSPAAFEE----------YGAAINENPVGTGPFKFVSWTRDDSIVLEKNEEYW 254
Query: 217 GARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWL---D 273
GLP I+ + N G +D+ + NP+ V+ + D
Sbjct: 255 KE---GLPKLDKIIFQVIPDNSARLTALRSGQIDI---------MDGLNPDDVAQVEGDD 302
Query: 274 RPPYFPPVVPVIMY--FNTKHKPLDNPLVRKAIAEAICPAQIVK---QGPISDLPDQTPL 328
F I Y F+ + +P D+PLVR+AI AI ++ G + P
Sbjct: 303 SIVLFERATNNIGYLGFHVEKEPFDDPLVRQAINHAIDKDSLITALYNGLAEPAKNPVPP 362
Query: 329 GNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREYNGKDLVL-TF 387
G + G ++ I Y + DP+ A +LL EAG +D G + L T
Sbjct: 363 GYL--------GYNEAIDPYAY---DPERARELLAEAGYED----------GFEFELWTM 401
Query: 388 AACGP-CSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFDLTM-HWAGTFES 445
P D +A E + + +GI + DW T + + + G D+ M W+G
Sbjct: 402 PVARPYMPDPQRAAEAIQSNFADVGITAKIETRDWATYLEETEKGAHDMFMLGWSGV-NG 460
Query: 446 DPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLK 505
DP NL++ + GG N Y NE+L++ KT D ++ L E E+ +
Sbjct: 461 DPDYFLSNLLH--GDAIPGG-NRSFYDEGDVNEILNQAKKTVDPNEREVLYFEALEMIHE 517
Query: 506 DVSAVPL 512
D VPL
Sbjct: 518 DAVMVPL 524
>pdb|1DPE| Dipeptide-Binding Protein
Length = 507
Score = 88.2 bits (215), Expect = 3e-16
Identities = 122/540 (22%), Positives = 212/540 (38%), Gaps = 111/540 (20%)
Query: 31 QTLYTANSSPPTNANP-------VYGSNIIPIAGLVFEPLFQLNFMKTELVPWLAEYGKW 83
+TL + P NP Y ++ +P+ + L + TE++P LAE KW
Sbjct: 1 KTLVYCSEGSPEGFNPQLFISGTTYDASSVPL----YNRLVEFKIGTTEVIPGLAE--KW 54
Query: 84 VSSN---VFEVKLREGTKWQDGKP------LTAEDVKFSF------------------EY 116
S + LR+G KW D K L A+DV FSF EY
Sbjct: 55 EVSEDGKTYTFHLRKGVKWHDNKEFKPTRELNADDVVFSFDRQKNAQNPYHKVSGGSYEY 114
Query: 117 YEKVGLKNWSEYGLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKNIDPKN 176
+E +GL + E+K VDD T+QFV R + + L + +
Sbjct: 115 FEGMGLPEL----ISEVKKVDDNTVQFVLT--------RPEAPFLADLAMDFASILSKEY 162
Query: 177 VKTMTFLGDEQKY---LVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLY 233
M G +K +G+GP++L + + + D +WG + P+ ++
Sbjct: 163 ADAMMKAGTPEKLDLNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTK------PQIDTLVF 216
Query: 234 VQSNDQAANM--FLRGDLDVGTYY--VDIVELKK-KNPNIVSWLDRPPYFPPVVPVIMYF 288
+ D + + + V Y DI +K+ K+ N++ P + + +
Sbjct: 217 SITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKSINLME-------MPGLNVGYLSY 269
Query: 289 NTKHKPLDNPLVRKAIAEAICPAQIVK---QGPISDLPDQTPLGNIMKSWKEKIGVSQLI 345
N + KPLD+ VR+A+ A+ I+K QG + P W G + +
Sbjct: 270 NVQKKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSAKNLIP----PTMW----GYNDDV 321
Query: 346 KEYGWKYCDPQDAAKLLDEAGI-KDTDGDGW-----REYNGKDLVLTFAACGPCSDWMQA 399
++Y + DP+ A LL EAG+ K D W R YN + +
Sbjct: 322 QDYTY---DPEKAKALLKEAGLEKGFSIDLWAMPVQRPYN--------------PNARRM 364
Query: 400 VEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFD-LTMHWAGTFESDPYSVYHNLMYYK 458
E++ +G++ + Y+WG + + + GE + M W G DP + + +
Sbjct: 365 AEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGD-NGDPDNFF--ATEFS 421
Query: 459 NETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLF 518
+ G+N+ + +L+ T D K+VEL ++ + A+ + T+F
Sbjct: 422 CAASEQGSNYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQVVMHDQAPALIIAHSTVF 481
>emb|CAA40006.1| (X56678) dciAE [Bacillus subtilis]
Length = 543
Score = 86.6 bits (211), Expect = 8e-16
Identities = 118/522 (22%), Positives = 211/522 (39%), Gaps = 68/522 (13%)
Query: 30 EQTLYTANSSPPTNANPVYGSNIIPIAGL--VFEPLFQLNFMKTELVPWLAEYGKWVSSN 87
E+ LY N + PT+ +P G N + L + E L +L E P +AE KW S
Sbjct: 43 EKVLYVNNENEPTSFDPPIGFNNVSWQPLNNIMEGLTRLG-KDHEPEPAMAE--KWSVSK 99
Query: 88 ---VFEVKLREGTKWQDGKPLTAEDVKFSFE---------------YYEKVGLKNWSEYG 129
+ +RE KW +G P+TA D +++++ Y+ + G S G
Sbjct: 100 DNKTYTFTIRENAKWTNGDPVTAGDFEYAWKRMLDPKKGASSAFLGYFIEGGEAYNSGKG 159
Query: 130 LR-EIKVV--DDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKNIDPKNVKTMTFLGDE 186
+ ++KV DDRT++ E Q Y + ++ + ++ K K E
Sbjct: 160 KKDDVKVTAKDDRTLEVTLEAP--------QKYFLSVVSNPAYFPVNEKVDKDNPKWFAE 211
Query: 187 QKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLR 246
VG+GP+KL + ++D +W L K+ + V + MF
Sbjct: 212 SDTFVGNGPFKLTEWKHDDSITMEKSDTYWDKDTVKLDKVKWAM---VSDRNTDYQMFQS 268
Query: 247 GDLDVGTYYVDIVE--LKKKNPNIVSWLDRPPYFPPVVPVIMYFNTKHKPLDNPLVRKAI 304
G+LD ++ + L + N NIV YF FN +P N +RKA
Sbjct: 269 GELDTAYVPAELSDQLLDQDNVNIVD--QAGLYF-------YRFNVNMEPFQNENIRKAF 319
Query: 305 AEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDA-AKLLD 363
A A+ +IVK ++ ++ + + + G +E G P ++ AK L
Sbjct: 320 AMAVDQEEIVKY--VTKNNEKPAHAFVSPGFTQPDGKD--FREAGGDLIKPNESKAKQLL 375
Query: 364 EAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLK-VIGIKVDVRKYDWG 422
E G+K+ YN + + P + + E + +LK +G+ V + +W
Sbjct: 376 EKGMKE------ENYNKLPAITLTYSTKP--EHKKIAEAIQQKLKNSLGVDVKLANMEWN 427
Query: 423 TMVSKQQAGEFDLTMHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDE 482
+ Q+A +F + +DP S + N ++ G + N + ++L+ +
Sbjct: 428 VFLEDQKALKFQFSQSSFLPDYADPIS-FLEAFQTGNSMNRTG-----WANKEYDQLIKQ 481
Query: 483 LAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLFYEANTQ 524
ADE + L+ + E+ + + +P+Y + N Q
Sbjct: 482 AKNEADEKTRFSLMHQAEELLINEAPIIPVYFYNQVHLQNEQ 523
>sp|P33590|NIKA_ECOLI NICKEL-BINDING PERIPLASMIC PROTEIN PRECURSOR >gi|628766|pir||S39594
nickel-binding periplasmic protein precursor -
Escherichia coli >gi|404845|emb|CAA51659.1| (X73143)
NikA [Escherichia coli] >gi|466612|gb|AAB18451.1|
(U00039) nikA [Escherichia coli]
>gi|1789887|gb|AAC76501.1| (AE000423) periplasmic
binding protein for nickel [Escherichia coli K12]
Length = 524
Score = 86.6 bits (211), Expect = 8e-16
Identities = 123/518 (23%), Positives = 214/518 (40%), Gaps = 66/518 (12%)
Query: 5 LATLLIGLFFLSTIGIVSAAEELPREQTLYTANSSPPTNANPVYGSNIIPIAGLVFEPLF 64
L+TL LF L P E T + P N + +Y N + +V+EPL
Sbjct: 2 LSTLRRTLFALLACASFIVHAAAPDEITTAWPVNVGPLNPH-LYTPNQMFAQSMVYEPLV 60
Query: 65 QLNFMKTELVPWLAEYGKWVSSN---VFEVKLREGTKWQDGKPLTAEDVKFSFEYYEKVG 121
+ ++PWLA+ W S + LR+ K+ +G+P AE +F +
Sbjct: 61 KYQ-ADGSVIPWLAK--SWTHSEDGKTWTFTLRDDVKFSNGEPFDAEAAAENF----RAV 113
Query: 122 LKNWSEYGLREI--KVVDDRTIQFVFEKTPNVWAWRNQLY---RVLILPEHVFKNIDP-- 174
L N + E+ ++VD + + KT ++ Y + L LP F+ I P
Sbjct: 114 LDNRQRHAWLELANQIVDVKALS----KTELQITLKSAYYPFLQELALPRP-FRFIAPSQ 168
Query: 175 -KNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLY 233
KN +TM + K +G+GP+ L + Q +F+RN+++WG + PA K I
Sbjct: 169 FKNHETMNGI----KAPIGTGPWILQESKLNQYDVFVRNENYWGEK----PAIKKITFNV 220
Query: 234 VQSNDQAANMFLRGDLDV-----GTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMYF 288
+ A F GD+D+ G +D +NP + L + P+ V++
Sbjct: 221 IPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARFSQNPAYHTQLSQ-----PIETVMLAL 275
Query: 289 NTKHKPLDNPLVRKAIAEAICPAQIVKQG-----PISD--LPDQTPLGNIMKSWKEKIGV 341
NT P + VR+A+ A+ ++ ++D P N+ +
Sbjct: 276 NTAKAPTNELAVREALNYAVNKKSLIDNALYGTQQVADTLFAPSVPYANL------GLKP 329
Query: 342 SQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVE 401
SQ DPQ A LL++AG G RE NG+ L + + G + E
Sbjct: 330 SQY---------DPQKAKALLEKAGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAE 380
Query: 402 IVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFDLTMHWAGTFESDPYSVYHNLMYYKNET 461
I+ ++ IG V + + ++ ++Q+ G F + H DP++ ++ +
Sbjct: 381 IIQADMRQIGADVSLIGEEESSIYARQRDGRFGMIFHRTWGAPYDPHAFLSSMRVPSHAD 440
Query: 462 DKGGANFGNYYNPKANELLDELAKTADEAKQVELLREL 499
+ A G P ++ + E+ T DE ++ L R++
Sbjct: 441 FQ--AQQGLADKPLIDKEIGEVLATHDETQRQALYRDI 476
>gi|11497010 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein (oppAIV) [Borrelia burgdorferi]
>gi|7442333|pir||D70218 oligopeptide ABC transporter,
periplasmic oligopeptide-binding protein (oppAIV)
homolog - Lyme disease spirochete plasmid B/cp26
>gi|2281468|gb|AAC46280.1| (AF000948) OppAIV [Borrelia
burgdorferi] >gi|2689891|gb|AAC66315.1| (AE000792)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein (oppAIV) [Borrelia
burgdorferi]
Length = 530
Score = 86.2 bits (210), Expect = 1e-15
Identities = 140/579 (24%), Positives = 244/579 (41%), Gaps = 114/579 (19%)
Query: 3 KFLATLLIGLFFLSTIGIVSAAEELPREQTLYTAN--SSPPTN----ANPVYGSNIIPIA 56
K L L + FL+ I ++S E R + ++ N S P T N GS I+
Sbjct: 2 KILIKKLKVVLFLNLILLISCVNESNRNKLVFKLNIGSEPATLDAQLINDTVGSGIV--- 58
Query: 57 GLVFEPLFQLNFMKTELVPWLAEYGKWVSSN---VFEVKLREGTKWQDGKPLTAEDVKFS 113
+F + + P LA+ W S+ V+ LR+ W DG +TAE ++ S
Sbjct: 59 SQMFLGILDGDPRTGGYRPGLAK--SWDISDDGVVYTFHLRDNLVWSDGVSITAEGIRKS 116
Query: 114 F------------------------EYYEKVGLKNWSEYGLREIKVVDDRTIQFVFEKTP 149
+ EY++ G N SE G IK +D++T++ K+P
Sbjct: 117 YLRILDKETGSSFVNMIKSVIKNAEEYFD--GKANESELG---IKALDEKTLEITL-KSP 170
Query: 150 NVWAWRNQLYRVLI-LPEHVFKNI-----DPKNVKTMTFLGDEQKYLVGSGPYKLYKVVP 203
+ +++ I +P HV + DP+N +V SGP+KL V
Sbjct: 171 KPYFLDMLVHQTFIPVPMHVIEKYGQRWTDPEN-------------MVVSGPFKLKSRVL 217
Query: 204 QQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKK 263
+K + +N+ ++ ++ L + I+ ++ A NM+L +LD K
Sbjct: 218 NEKVVLEKNNKYYNSKDVVLDS---IIFFVTDNSITAYNMYLNDELDA--------IFKN 266
Query: 264 KNPNIVSWLD-RPPYFPPVVPVIMYF--NTKHKPLDNPLVRKAIAEAICPAQIVKQGPIS 320
P+++ L R Y+ + ++ N K KPLDN VRKA++ AI + + + ++
Sbjct: 267 VPPDLLKDLKLRDDYYSMGINSTSFYSLNMKVKPLDNVKVRKALSFAI-DRKTLTESVLN 325
Query: 321 D--LPDQ--TPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWR 376
D +P + TP I S+K + + D + A KLL +AG
Sbjct: 326 DSSIPTRRATP-DYIDYSYKSNLSL-----------FDAEMAKKLLADAGYP-------- 365
Query: 377 EYNGKDLVLTFAACGPCSDWMQAVEIVVNQLKV-IGIKVDVRKYDWGTMVSKQQAGEFDL 435
NG + L + E + NQ K + I V + +W T ++ + G +++
Sbjct: 366 --NGNNFPLLKVKYNTSDSQRKIAEFIQNQWKKNLNINVQLENEEWSTYINSRVNGNYEI 423
Query: 436 TMH-WAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVE 494
W+G + +DP + L ++ E + +++G Y N + +ELL + D K+ E
Sbjct: 424 IRSGWSGDY-ADPMTF---LSIFQTE-NTSFSSYG-YSNSEYDELLIKSDNERDIFKRQE 477
Query: 495 LLRELTEIWL-KDVSAVPLYMGTLFYEANTQYWANW-PN 531
+L++ I + +D AV L + + Y W W PN
Sbjct: 478 ILKKAEAIIIERDFPAVFLNITSSSYLFRNDKWKGWEPN 516
>pir||B82242 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein VC1091 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9655560|gb|AAF94250.1| (AE004190)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Vibrio cholerae]
Length = 543
Score = 85.4 bits (208), Expect = 2e-15
Identities = 123/536 (22%), Positives = 211/536 (38%), Gaps = 85/536 (15%)
Query: 14 FLSTIGIVSAAEELPREQTLYTANSSPPTNANP-----VYGSNIIP--IAGLVFEPLFQL 66
F S V A +L Q L N + + +P V SN+I + GLV +
Sbjct: 23 FTSFAANVPAGTKLAPVQELVRGNGTEVASLDPHKTEGVPESNVIRDLLEGLVNQDA--- 79
Query: 67 NFMKTELVPWLAEYGKWVSSNVFEVKLREGTKWQDGKPLTAEDVKFSFE----------- 115
+VP +AE + + F +R+ KW +G P+TA D +SF+
Sbjct: 80 ---NGNVVPGVAESWETTDNKTFTFHIRKDAKWSNGDPVTAHDFVYSFQRAVDPATASPY 136
Query: 116 --YYEKVGLKNWSEYGLRE-------IKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPE 166
Y E +KN E E K VDD T+ F E Y V+++
Sbjct: 137 SWYMEYTKMKNAKEIIAGEKDKSTLGAKAVDDHTLVFELETAVP--------YFVMMMGH 188
Query: 167 HVFKNIDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAP 226
K I V+ + + VG+G Y L K V ++ RN +W + L
Sbjct: 189 TTVKPIHKATVEKFGDQWTKPENFVGNGAYVLDKWVVNERLELKRNPQYWDDKNTVLNKV 248
Query: 227 KYIVQLYVQSNDQAANMFLRGDLDVGTY--YVDIVELKKKNPNIVSWLDRPPYFPPVVPV 284
Y L +++ N FL G++ + LKK++P V + +
Sbjct: 249 TY---LPIENQVAEMNRFLSGEIQITNELPLEHFKRLKKEHPESVQVQGQ------LCTY 299
Query: 285 IMYFNTKHKPLDNPLVRKAIAEAICPAQIVKQGPISD-LPDQTPLGNIMKSWKEKIGVSQ 343
FN K P D+ VRKA++ AI + +SD + Q + + G S
Sbjct: 300 YYGFNNKKPPFDDVRVRKALSYAI------DRDVVSDAILGQGQKPAYFLTPEITAGFSP 353
Query: 344 LIKEYGWKYCDPQ---DAAKLLDEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAV 400
+ YG K + +A KLL+EAG YN K L F S+ + +
Sbjct: 354 EMPAYG-KMTQKERIAEAKKLLEEAG-----------YN-KSNPLKFTLLYNTSENHKKI 400
Query: 401 EIVVNQL--KVIGIKVDVRKYDWGTMVSKQQAGEFDLT-MHWAGTFESDPYSVYHNLMYY 457
+ + +G+ + + +W T + ++ G FD+T W G + + S + LM
Sbjct: 401 ATAIQSMWKTSLGVDIALENQEWKTYLDTRRQGNFDVTRAGWCGDY--NEASSFLTLMLS 458
Query: 458 KNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVSAVPLY 513
N +N Y++ + + ++++ + E ++ +L + ++ +D+ P+Y
Sbjct: 459 SNT-----SNDPQYHSAEYDAVIEKAKTSTSEEERQKLYADAEKLLARDMPIAPIY 509
>gb|AAC46283.1| (AF000366) oligopeptide permease homolog AII [Borrelia burgdorferi]
Length = 528
Score = 85.0 bits (207), Expect = 2e-15
Identities = 113/472 (23%), Positives = 200/472 (41%), Gaps = 79/472 (16%)
Query: 88 VFEVKLREGTKWQDGKPLTAEDVKFSF----------EYYEKVG--LKNWSEYGLRE--- 132
V+ LRE W DG +TAE ++ S+ +Y E V +KN +Y +
Sbjct: 88 VYTFNLREKITWSDGVAITAEGIRKSYLRILNKETGSKYVEMVKSVIKNGQKYFDGQVTD 147
Query: 133 ----IKVVDDRTIQFVFEKTPNVWAWRNQLYRVLI-LPEHVFKNIDPKNVKTMTFLGDEQ 187
I+ +D++T++ E +P + +++ I +P HV +
Sbjct: 148 SELGIRAIDEKTLEITLE-SPKPYFIDMLVHQSFIPVPVHVTEKYGQN--------WTSP 198
Query: 188 KYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAA-NMFLR 246
+ +V SGP+KL + +P +K +F +N+ ++ + L + Y ++ A M+
Sbjct: 199 ENMVTSGPFKLKERIPNEKYVFEKNNKYYDSNEVELEE----ITFYTTNDSSTAYKMYEN 254
Query: 247 GDLDV--GTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMY--FNTKHKPLDNPLVRK 302
+LD G+ D+++ K R Y+ V I + FNT KPLDN +RK
Sbjct: 255 EELDAIFGSIPPDLIKNLKL---------RSDYYSSAVNAIYFYAFNTHIKPLDNVKIRK 305
Query: 303 AIAEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLL 362
A+ AI + + + D TP ++ L + +P+ A LL
Sbjct: 306 ALTLAIDRETLTYK--VLD-NGTTPTRRATPNFSSYSYAKSL------ELFNPEIAKALL 356
Query: 363 DEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLKV-IGIKVDVRKYDW 421
EAG + G+G+ L L + G + E + NQ K + I V++ +W
Sbjct: 357 AEAGYPN--GNGF-----PILKLKYNTNGANK---KICEFIQNQWKKNLNIDVELENEEW 406
Query: 422 GTMVSKQQAGEFDLTMH-WAGTFESDPYSVYHNLMYYKNETDKGGANFG--NYYNPKANE 478
T ++ + G +++ W G + +DP + + + +G F NY NP+ NE
Sbjct: 407 TTYLNTKANGNYEIARAGWIGDY-ADPLT-------FLSIFTQGYTQFSSHNYSNPEYNE 458
Query: 479 LLDELAKTADEAKQVELLRELTEIWL-KDVSAVPLYMGTLFYEANTQYWANW 529
L+ + D K+ ++LR+ EI + KD P+Y+ Y W W
Sbjct: 459 LIKKSDLELDPIKRQDILRQAEEIIIEKDFPIAPIYIYGNSYLFRNDKWTGW 510
>emb|CAB96045.1| (AJ250013) surface antigen [Borrelia garinii]
Length = 528
Score = 84.7 bits (206), Expect = 3e-15
Identities = 111/476 (23%), Positives = 195/476 (40%), Gaps = 87/476 (18%)
Query: 88 VFEVKLREGTKWQDGKPLTAEDVKFSF----------EYYEKVG--LKNWSEYGLRE--- 132
V+ LRE W DG +TAE ++ S+ Y E V +KN +Y +
Sbjct: 88 VYTFTLREKIIWSDGVAITAEGIRKSYLRILNKETGSNYAEMVKSTIKNGQKYFDGQVSD 147
Query: 133 ----IKVVDDRTIQFVFEKTPNVWAWRNQLYRVLI-LPEHVFKNI-----DPKNVKTMTF 182
I+ +D++T++ E +P + +++ I +P H+ + P+N+ T
Sbjct: 148 SELGIRAIDEKTLEITLE-SPKPYFIDMLVHQSFIPIPIHIAEKYGQSWTSPENIVT--- 203
Query: 183 LGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAAN 242
SGP+KL + +P +K + +ND ++ + + + I + A
Sbjct: 204 ----------SGPFKLKERIPNEKYVVEKNDKYYNSNQVEV---QEITFYTTNDSSTAYK 250
Query: 243 MFLRGDLDV--GTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMY--FNTKHKPLDNP 298
M+ +LD G+ D+++ K R Y+ V I + FNT KPLDN
Sbjct: 251 MYENKELDAIFGSIPPDLIKDLKL---------RSDYYSSAVNAIYFYAFNTYIKPLDNV 301
Query: 299 LVRKAIAEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDA 358
VRKA+ AI + + + D TP I ++ L + +P+ A
Sbjct: 302 KVRKALTLAIDRETLTYK--VLD-NGTTPTRRIAPNFSSYSYAKNL------ELFNPEIA 352
Query: 359 AKLLDEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQ-LKVIGIKVDVR 417
LL EAG NG + + E + NQ K++ I V++
Sbjct: 353 KTLLAEAGYP----------NGNGFPILKLKYNTSEAHKKICEFIQNQWKKILNIDVELE 402
Query: 418 KYDWGTMVSKQQAGEFDLT-MHWAGTFESDPYSVYHNLMYYKNETDKGGANFG--NYYNP 474
+W T ++ + G +++ W G + +DP + + + +G F NY +P
Sbjct: 403 NEEWTTYLNTRSNGNYEIARAGWIGDY-ADP-------LTFLSIFTQGYTQFSSHNYSSP 454
Query: 475 KANELLDELAKTADEAKQVELLRELTEIWL-KDVSAVPLYMGTLFYEANTQYWANW 529
+ NEL+ + D K+ ++LR+ EI + KD P+Y+ Y W W
Sbjct: 455 EYNELIKKSDLELDPIKRQDILRKAEEIIIEKDFPIAPIYIYGNSYLFRNDKWTGW 510
>pir||H83083 probable binding protein component of ABC transporter PA4497
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950736|gb|AAG07885.1|AE004863_5 (AE004863) probable
binding protein component of ABC transporter
[Pseudomonas aeruginosa]
Length = 532
Score = 83.1 bits (202), Expect = 9e-15
Identities = 120/544 (22%), Positives = 215/544 (39%), Gaps = 107/544 (19%)
Query: 17 TIGIVSAAEELPREQTLYTANSSPPTNANPVYGSNIIPIAGLVFEPLFQLNFMKTELVPW 76
T+ + + A + YT+ + +A+P+Y A F P ++P
Sbjct: 28 TLAVCTEAAPEGFDPARYTSGYTFDASAHPLYN------ALAAFAP------GSATVIPA 75
Query: 77 LAEYGKW-VSSN--VFEVKLREGTKWQDG------KPLTAEDVKFSFE------------ 115
LAE W VS++ V+ +LR+G K+ + A+DV FSF+
Sbjct: 76 LAE--SWDVSADGLVYTFRLRQGVKFHSTDYFKPTREFDADDVLFSFQRMLDPQHPAHDL 133
Query: 116 ------YYEKVGLKNWSEYGLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVF 169
Y + + L++ E I+ +D+ ++FV K P L +P
Sbjct: 134 SPSGYPYADAMQLRDIIE----RIEKIDEHQVRFVL-KHPEA-----PFLADLAMPFGSI 183
Query: 170 KNIDPKNVKTMTFLGDE-QKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKY 228
+ + GDE +G+GP+ + + + N D+W G PA +
Sbjct: 184 LSAEYAGQLIARGKGDELNSKPIGTGPFVFTRYRKDAQVRYAANPDYWK----GKPAIDH 239
Query: 229 IVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMY- 287
+V + R + + P V+ L + P + M
Sbjct: 240 LVLAITLDPNVRVQRLRRNECQIAL---------TPKPEDVAALRQDPQLTVLEEAAMIT 290
Query: 288 ----FNTKHKPLDNPLVRKAIAEAICPAQIVK-------QGPISDLPDQTPLGNIMKSWK 336
NT+H+P D+P VR+AIA + +K + I P
Sbjct: 291 SHAAINTRHEPFDDPRVRRAIAMGFNKSSYLKIVFGDQARPAIGPYPPML---------- 340
Query: 337 EKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIK-DTDGDGWREYNGKDLVLTFAACGPCSD 395
+G I++ W Y DP+ A LL EAG+ DT + + GP +
Sbjct: 341 --LGYDDSIRD--WPY-DPERAKALLKEAGVTPDTPLN----------LYISTGSGPGGN 385
Query: 396 WMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFDLTMH-WAGTFESDPYSVYHNL 454
+ +++ + L IGI+V++R+++WG MV + +AGE D+ ++ W G + HNL
Sbjct: 386 PARVAQLIQSDLAAIGIRVNIRQFEWGEMVKRTKAGEHDMMLYSWIGDNGDPDNFLTHNL 445
Query: 455 MYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVSAVPLYM 514
E+ G N + + +E + + + DE+++V L +E I+ + + +PL
Sbjct: 446 GCASVES---GENRARWCDKGFDEAIRKARMSNDESQRVALYKEAQRIFHEQMPWLPLAH 502
Query: 515 GTLF 518
+F
Sbjct: 503 PLMF 506
>pir||S16651 dciAE protein - Bacillus subtilis
Length = 543
Score = 83.1 bits (202), Expect = 9e-15
Identities = 117/522 (22%), Positives = 210/522 (39%), Gaps = 68/522 (13%)
Query: 30 EQTLYTANSSPPTNANPVYGSNIIPIAGL--VFEPLFQLNFMKTELVPWLAEYGKWVSSN 87
E+ LY N + PT+ +P G N + L + E L +L E P +AE KW S
Sbjct: 43 EKVLYVNNENEPTSFDPPIGFNNVSWQPLNNIMEGLTRLG-KDHEPEPAMAE--KWSVSK 99
Query: 88 ---VFEVKLREGTKWQDGKPLTAEDVKFSFE---------------YYEKVGLKNWSEYG 129
+ +RE KW +G P+TA D +++++ Y+ + G S G
Sbjct: 100 DNKTYTFTIRENAKWTNGDPVTAGDFEYAWKRMLDPKKGASSAFLGYFIEGGEAYNSGKG 159
Query: 130 LR-EIKVV--DDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKNIDPKNVKTMTFLGDE 186
+ ++KV DDRT++ E Q Y + ++ + ++ K K E
Sbjct: 160 KKDDVKVTAKDDRTLEVTLEAP--------QKYFLSVVSNPAYFPVNEKVDKDNPKWFAE 211
Query: 187 QKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLR 246
VG+GP+KL + ++D +W L K+ + V + M
Sbjct: 212 SDTFVGNGPFKLTEWKHDDSITMEKSDTYWDKDTVKLDKVKWAM---VSDRNTDYQMKQS 268
Query: 247 GDLDVGTYYVDIVE--LKKKNPNIVSWLDRPPYFPPVVPVIMYFNTKHKPLDNPLVRKAI 304
G+LD ++ + L + N NIV YF FN +P N +RKA
Sbjct: 269 GELDTAYVPAELSDQLLDQDNVNIVD--QAGLYF-------YRFNVNMEPFQNENIRKAF 319
Query: 305 AEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDA-AKLLD 363
A A+ +IVK ++ ++ + + + G +E G P ++ AK L
Sbjct: 320 AMAVDQEEIVKY--VTKNNEKPAHAFVSPGFTQPDGKD--FREAGGDLIKPNESKAKQLL 375
Query: 364 EAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLK-VIGIKVDVRKYDWG 422
E G+K+ YN + + P + + E + +LK +G+ V + +W
Sbjct: 376 EKGMKE------ENYNKLPAITLTYSTKP--EHKKIAEAIQQKLKNSLGVDVKLANMEWN 427
Query: 423 TMVSKQQAGEFDLTMHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDE 482
+ Q+A +F + +DP S + N ++ G + N + ++L+ +
Sbjct: 428 VFLEDQKALKFQFSQSSFLPDYADPIS-FLEAFQTGNSMNRTG-----WANKEYDQLIKQ 481
Query: 483 LAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLFYEANTQ 524
ADE + L+ + E+ + + +P+Y + N Q
Sbjct: 482 AKNEADEKTRFSLMHQAEELLINEAPIIPVYFYNQVHLQNEQ 523
>sp|P06202|OPPA_SALTY PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN PRECURSOR
>gi|72428|pir||QREBOA oligopeptide-binding protein
precursor - Salmonella typhimurium
>gi|47802|emb|CAA29039.1| (X05491) Opp A (AA1-542)
[Salmonella typhimurium] >gi|47808|emb|CAA27785.1|
(X04194) precursor polypeptide [Salmonella typhimurium]
Length = 542
Score = 82.3 bits (200), Expect = 1e-14
Identities = 129/542 (23%), Positives = 219/542 (39%), Gaps = 102/542 (18%)
Query: 17 TIGIVSAAEELPREQTLYTANSSPPTNANP--VYGSNIIPIAGLVFEPLFQLNFMKTELV 74
T V A +L +QTL N S + +P + G ++ +FE L ++ ++
Sbjct: 24 TAADVPAGVQLADKQTLVRNNGSEVQSLDPHKIEGVPESNVSRDLFEGLL-ISDVEGHPS 82
Query: 75 PWLAEYGKWVSSN--VFEVKLREGTKWQDGKPLTAEDVKFSFEYYEK------------- 119
P +AE KW + + V+ LRE KW DG P+TA D +S++
Sbjct: 83 PGVAE--KWENKDFKVWTFHLRENAKWSDGTPVTAHDFVYSWQRLADPNTASPYASYLQY 140
Query: 120 ----------VGLKNWSEYGLREIKVVDDRTIQFVF-EKTPNVWAWRNQLYRVLILPEHV 168
G K ++ G +K +DD T + E P Y++L+ P
Sbjct: 141 GHIANIDDIIAGKKPATDLG---VKALDDHTFEVTLSEPVP-------YFYKLLVHP--- 187
Query: 169 FKNIDPKNVKTMTFLGD---EQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPA 225
++ P + GD + +V +G YKL V ++ + RN +W +
Sbjct: 188 --SVSPVPKSAVEKFGDKWTQPANIVTNGAYKLKNWVVNERIVLERNPQYWDNAKTVINQ 245
Query: 226 PKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVEL----KKKNPNIVSWLDRPPYFPPV 281
Y L + S N + G++D+ TY +EL KK+ PN V P
Sbjct: 246 VTY---LPISSEVTDVNRYRSGEIDM-TYNNMPIELFQKLKKEIPNEVR-------VDPY 294
Query: 282 VPVIMY-FNTKHKPLDNPLVRKAIAEAICPAQIV-KQGPISDLP--DQTPLGNIMKSWKE 337
+ Y N + P ++ VR A+ A+ IV K DLP TP
Sbjct: 295 LCTYYYEINNQKAPFNDVRVRTALKLALDRDIIVNKVKNQGDLPAYSYTP---------P 345
Query: 338 KIGVSQLIKEYGWKYCDP---QDAAKLLDEAGIKDTDGDGWREYNGKDLVLTFAACGPCS 394
++L++ +K+ ++A KLL EAG D LTF S
Sbjct: 346 YTDGAKLVEPEWFKWSQQKRNEEAKKLLAEAGFT------------ADKPLTFDLLYNTS 393
Query: 395 DWMQAVEIVVNQL--KVIGIKVDVRKYDWGTMVSKQQAGEFDLTMH-WAGTFESDPYSVY 451
D + + I V + K +G+ V++ +W T + + G FD+ W + ++P S
Sbjct: 394 DLHKKLAIAVASIWKKNLGVNVNLENQEWKTFLDTRHQGTFDVARAGWCADY-NEPTSFL 452
Query: 452 HNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVSAVP 511
+ ++ N +Y +P ++L+ + K AD+ ++ EL + + KD + VP
Sbjct: 453 NTML------SDSSNNTAHYKSPAFDKLIADTLKVADDTQRSELYAKAEQQLDKDSAIVP 506
Query: 512 LY 513
+Y
Sbjct: 507 VY 508
>pdb|1JET|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kak
>gi|2194062|pdb|1JEU|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Kek >gi|2194057|pdb|1JEV|A
Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed
With Kwk >gi|1310734|pdb|2OLB|A Chain A, Oligopeptide
Binding Protein (Oppa) Complexed With Tri-Lysine
>gi|4139566|pdb|1B32|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Kmk >gi|6729871|pdb|1B4Z|A
Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed
With Kdk >gi|6137589|pdb|1QKB|A Chain A, Oligo-Peptide
Binding Protein (Oppa) Complexed With Kvk
>gi|4389358|pdb|1B46|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Kpk >gi|6137472|pdb|1QKA|A
Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed
With Krk >gi|4389026|pdb|1B51|A Chain A, Oligo-Peptide
Binding Protein (Oppa) Complexed With Ksk
>gi|4139989|pdb|1B1H|A Chain A, Oligo-Peptide Binding
ProteinTRIPEPTIDE (LYS HPE LYS) Complex
>gi|4139619|pdb|1B3F|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Khk >gi|6729873|pdb|1B58|A
Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed
With Kyk >gi|4389332|pdb|1B5J|A Chain A, Oligo-Peptide
Binding Protein (Oppa) Complexed With Kqk
>gi|4139999|pdb|1B6H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl-Norvalyl- Lysine
>gi|4558066|pdb|1B9J|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Klk >gi|2392717|pdb|2RKM|A
Chain A, Structure Of Oppa Complexed With Lys-Lys
>gi|4139991|pdb|1B2H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl-Ornithyl- Lysine
>gi|4139980|pdb|1B0H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl- Napthylalanyl-Lysine
>gi|4139995|pdb|1B4H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl- Diaminobutyric Acid-Lysine
>gi|4139997|pdb|1B5H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl- Diaminopropanoic
Acid-Lysine >gi|4389330|pdb|1B5I|A Chain A,
Oligo-Peptide Binding Protein (Oppa) Complexed With Knk
>gi|4139623|pdb|1B3L|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Kgk >gi|4139625|pdb|1B3L|C
Chain C, Oligo-Peptide Binding Protein (Oppa) Complexed
With Kgk >gi|4139621|pdb|1B3G|A Chain A, Oligo-Peptide
Binding Protein (Oppa) Complexed With Kik
>gi|4139993|pdb|1B3H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl- Cyclohexylalanyl-Lysine
>gi|4139926|pdb|1B7H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl- Norleucyl-Lysine
>gi|1310797|pdb|1OLC|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Lys-Lys-Lys-Ala
>gi|6729986|pdb|1B40|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Kfk >gi|2392536|pdb|1RKM|
Structure Of Oppa >gi|4388950|pdb|1B52|A Chain A,
Oligo-Peptide Binding Protein (Oppa) Complexed With Ktk
>gi|576223|pdb|1OLA|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With A Four-Residue Peptide
Length = 517
Score = 81.9 bits (199), Expect = 2e-14
Identities = 128/538 (23%), Positives = 218/538 (39%), Gaps = 102/538 (18%)
Query: 21 VSAAEELPREQTLYTANSSPPTNANP--VYGSNIIPIAGLVFEPLFQLNFMKTELVPWLA 78
V A +L +QTL N S + +P + G ++ +FE L ++ ++ P +A
Sbjct: 3 VPAGVQLADKQTLVRNNGSEVQSLDPHKIEGVPESNVSRDLFEGLL-ISDVEGHPSPGVA 61
Query: 79 EYGKWVSSN--VFEVKLREGTKWQDGKPLTAEDVKFSFEYYEK----------------- 119
E KW + + V+ LRE KW DG P+TA D +S++
Sbjct: 62 E--KWENKDFKVWTFHLRENAKWSDGTPVTAHDFVYSWQRLADPNTASPYASYLQYGHIA 119
Query: 120 ------VGLKNWSEYGLREIKVVDDRTIQFVF-EKTPNVWAWRNQLYRVLILPEHVFKNI 172
G K ++ G +K +DD T + E P Y++L+ P ++
Sbjct: 120 NIDDIIAGKKPATDLG---VKALDDHTFEVTLSEPVP-------YFYKLLVHP-----SV 164
Query: 173 DPKNVKTMTFLGD---EQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYI 229
P + GD + +V +G YKL V ++ + RN +W + Y
Sbjct: 165 SPVPKSAVEKFGDKWTQPANIVTNGAYKLKNWVVNERIVLERNPQYWDNAKTVINQVTY- 223
Query: 230 VQLYVQSNDQAANMFLRGDLDVGTYYVDIVEL----KKKNPNIVSWLDRPPYFPPVVPVI 285
L + S N + G++D+ TY +EL KK+ PN V P +
Sbjct: 224 --LPISSEVTDVNRYRSGEIDM-TYNNMPIELFQKLKKEIPNEVR-------VDPYLCTY 273
Query: 286 MY-FNTKHKPLDNPLVRKAIAEAICPAQIV-KQGPISDLP--DQTPLGNIMKSWKEKIGV 341
Y N + P ++ VR A+ A+ IV K DLP TP
Sbjct: 274 YYEINNQKAPFNDVRVRTALKLALDRDIIVNKVKNQGDLPAYSYTP---------PYTDG 324
Query: 342 SQLIKEYGWKYCDP---QDAAKLLDEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQ 398
++L++ +K+ ++A KLL EAG D LTF SD +
Sbjct: 325 AKLVEPEWFKWSQQKRNEEAKKLLAEAGFT------------ADKPLTFDLLYNTSDLHK 372
Query: 399 AVEIVVNQL--KVIGIKVDVRKYDWGTMVSKQQAGEFDLTMH-WAGTFESDPYSVYHNLM 455
+ I V + K +G+ V++ +W T + + G FD+ W + ++P S + ++
Sbjct: 373 KLAIAVASIWKKNLGVNVNLENQEWKTFLDTRHQGTFDVARAGWCADY-NEPTSFLNTML 431
Query: 456 YYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVSAVPLY 513
N +Y +P ++L+ + K AD+ ++ EL + + KD + VP+Y
Sbjct: 432 ------SDSSNNTAHYKSPAFDKLIADTLKVADDTQRSELYAKAEQQLDKDSAIVPVY 483
>pdb|1B05|A Chain A, Structure Of Oligo-Peptide Binding Protein Complexed With
Lys-Cys-Lys
Length = 517
Score = 81.9 bits (199), Expect = 2e-14
Identities = 128/538 (23%), Positives = 218/538 (39%), Gaps = 102/538 (18%)
Query: 21 VSAAEELPREQTLYTANSSPPTNANP--VYGSNIIPIAGLVFEPLFQLNFMKTELVPWLA 78
V A +L +QTL N S + +P + G ++ +FE L ++ ++ P +A
Sbjct: 3 VPAGVQLADKQTLVRNNGSEVQSLDPHKIEGVPESNVSRDLFEGLL-ISDVEGHPSPGVA 61
Query: 79 EYGKWVSSN--VFEVKLREGTKWQDGKPLTAEDVKFSFEYYEK----------------- 119
E KW + + V+ LRE KW DG P+TA D +S++
Sbjct: 62 E--KWENKDFKVWTFHLRENAKWSDGTPVTAHDFVYSWQRLADPNTASPYASYLQYGHIA 119
Query: 120 ------VGLKNWSEYGLREIKVVDDRTIQFVF-EKTPNVWAWRNQLYRVLILPEHVFKNI 172
G K ++ G +K +DD T + E P Y++L+ P ++
Sbjct: 120 NIDDIIAGKKPATDLG---VKALDDHTFEVTLSEPVP-------YFYKLLVHP-----SV 164
Query: 173 DPKNVKTMTFLGD---EQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYI 229
P + GD + +V +G YKL V ++ + RN +W + Y
Sbjct: 165 SPVPKSAVEKFGDKWTQPANIVTNGAYKLKNWVVNERIVLERNPQYWDNAKTVINQVTY- 223
Query: 230 VQLYVQSNDQAANMFLRGDLDVGTYYVDIVEL----KKKNPNIVSWLDRPPYFPPVVPVI 285
L + S N + G++D+ TY +EL KK+ PN V P +
Sbjct: 224 --LPISSEVTDVNRYRSGEIDM-TYNNMPIELFQKLKKEIPNEVR-------VDPYLCTY 273
Query: 286 MY-FNTKHKPLDNPLVRKAIAEAICPAQIV-KQGPISDLP--DQTPLGNIMKSWKEKIGV 341
Y N + P ++ VR A+ A+ IV K DLP TP
Sbjct: 274 YYEINNQKAPFNDVRVRTALKLALDRDIIVNKVKNQGDLPAYSYTP---------PYTDG 324
Query: 342 SQLIKEYGWKYCDP---QDAAKLLDEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQ 398
++L++ +K+ ++A KLL EAG D LTF SD +
Sbjct: 325 AKLVEPEWFKWSQQKRNEEAKKLLAEAGFT------------ADKPLTFDLLYNTSDLHK 372
Query: 399 AVEIVVNQL--KVIGIKVDVRKYDWGTMVSKQQAGEFDLTMH-WAGTFESDPYSVYHNLM 455
+ I V + K +G+ V++ +W T + + G FD+ W + ++P S + ++
Sbjct: 373 KLAIAVASIWKKNLGVNVNLENQEWKTFLDTRHQGTFDVARAGWCADY-NEPTSFLNTML 431
Query: 456 YYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVSAVPLY 513
N +Y +P ++L+ + K AD+ ++ EL + + KD + VP+Y
Sbjct: 432 ------SDSSNNTAHYKSPAFDKLIADTLKVADDTQRSELYAKAEQQLDKDSAIVPVY 483
>pir||S77182 oligopeptide transport system permease protein appA - Synechocystis
sp. (strain PCC 6803) >gi|1652821|dbj|BAA17740.1|
(D90908) oligopeptide transport system permease protein
[Synechocystis sp.]
Length = 631
Score = 81.5 bits (198), Expect = 3e-14
Identities = 118/469 (25%), Positives = 190/469 (40%), Gaps = 68/469 (14%)
Query: 2 KKFLATLLIGLFFLSTIGIVSAAEELPREQTLYTANSSPPTNANPVYGSNIIPIAGLVFE 61
+K ++ LL L ++G + E ++Q +++ S P T N V + G ++E
Sbjct: 39 QKLISALLCCLALTFSLGGCFSPEL--KDQVVFSVLSDPKT-FNAVLSQESPNVFGYIYE 95
Query: 62 PLFQLNFMKTELVPWLAEYGKWVSSNV-FEVKLREGTKWQDGKPLTAEDVKFSF-EYYEK 119
L + N + E P LAE + N+ L+EG +W DGKPLT +DV FS+ + Y
Sbjct: 96 GLIRENPLTGERTPALAESWEISPDNLTITFTLKEGLRWSDGKPLTVDDVLFSYNDLYLN 155
Query: 120 VGLKNWSEYGLR--------EIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKN 171
+ N L+ +I V DR + F P +A + + ILP H+ +
Sbjct: 156 PKIPNNYRDSLKVGESQAEPKITKVGDRQVAF---NIPEPFAPFLETAQFPILPAHILRE 212
Query: 172 IDPKNVKTMTFL-------GDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWW--GARYFG 222
K + L +V +GPYKL + V Q+ IF +N +W G
Sbjct: 213 TVEKTDENGNPLFLSTWGTNTPPDQIVVNGPYKLTRYVTSQRVIFSKNPYYWEKGPNGES 272
Query: 223 LPAPKYIVQLYVQSNDQAANMFLRGDLD---VGTYYVDIVELKKKNPNIVSWLDRPPYFP 279
LP +V V+S D + F G LD V +++ +++ N V + P Y
Sbjct: 273 LPYIPRVVWAIVESTDTSLLQFRSGSLDSLGVPPESFSLLKQEEERGNFVIYNGGPTYAS 332
Query: 280 PVVPVIMYFNTKH-KPLDNPL---------VRKAIAEAICPAQIVK-------QGPISDL 322
+ + + KPL +P+ R+AIA I ++V + S +
Sbjct: 333 SYLTFNLNQGKRQGKPLVDPIKSRWFNNLNFRQAIAYGIDRERMVNNIYRGLGEKQNSFI 392
Query: 323 PDQTPLGN----IMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREY 378
P Q+P N + EK L+K G+ Y + +LLD+ G
Sbjct: 393 PVQSPFFNPDVKVYNYDPEK--AQALLKAGGFTY---NNQRQLLDDRG------------ 435
Query: 379 NGKDLVLTFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSK 427
N VL A + M + L +GI+VD +G +V K
Sbjct: 436 NRVRFVLNTNAGNKVREAMGTQ--IQEDLGKLGIQVDFSPISFGVLVDK 482
>pir||B72289 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein - Thermotoga maritima (strain MSB8)
>gi|4981698|gb|AAD36226.1|AE001772_5 (AE001772)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Thermotoga maritima]
Length = 503
Score = 80.8 bits (196), Expect = 4e-14
Identities = 122/532 (22%), Positives = 216/532 (39%), Gaps = 71/532 (13%)
Query: 9 LIGLFFLSTIGIVSAAEELPREQTLYTANSSPPTNANPVYGSNIIPIAGLVFEPLFQLNF 68
L+ LF + T+ + AA+++ T + P N + SNI+ V L
Sbjct: 6 LVWLFLILTVTLSFAAKDIIVVGTTDKIRTLDPANCYDYFSSNILQN---VMVGLVDYEI 62
Query: 69 MKTELVPWLAEYGKWV---SSNVFEVKLREGTKWQDGKPLTAEDVKFSFEYYEKVGLKNW 125
+ L P LAE +W + V+ LR+ K++DG P+ A K+SF+ K L
Sbjct: 63 GTSVLKPVLAE--RWEVDETGTVYTFYLRKDAKFEDGTPIDAHVFKYSFDRVMK--LNGD 118
Query: 126 SEYGLREI----KVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKNIDPKNVKTMT 181
+ L ++ +VVDD T + + + + V +L V ++PK +
Sbjct: 119 PAFLLSDVVEKTEVVDDYTFRVTLKYPFSAF--------VSVLGYTVAYPVNPKVYPADS 170
Query: 182 FLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAA 241
F + SGPY++ + + + + N +++G + P K IV + ++
Sbjct: 171 FY---EGIPSASGPYRVKEWIRDVRIVLEANPNYFGEK----PKTKTIVINFYENASTLR 223
Query: 242 NMFLRGDLDVGTYYVD---IVELKKKNPNIVSWLDRPPYFPPVVPVIMYFNTKHKPLDNP 298
G++DV ++D +++L+ + +IV + P +V N P DN
Sbjct: 224 LALETGEIDVAYRHLDPRDVIDLEGRE-DIVVYKGNSPQIRYLV-----INVTQPPFDNV 277
Query: 299 LVRKAIAEAICPAQIVKQ---GPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDP 355
VR+A+A ++ IV+ G L P G W K + D
Sbjct: 278 KVRQALAYSVNRDVIVEDVFVGLAKPLYSMIPEG----MWGHKDVFPER---------DL 324
Query: 356 QDAAKLLDEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLKVIG-IKV 414
+ A LL EAG + E N + L + + +++ + G IKV
Sbjct: 325 EKARALLKEAG--------YDENNPLVIDLWYTPSHYGTTEADVAQVLKESFEETGVIKV 376
Query: 415 DVRKYDWGTMVSKQQAGEFDL-TMHWAGTFESDPYSVYHNLMYYKNETDKGGANFGNYY- 472
+++ +W T V G L + W + V+ L ++ G + G++Y
Sbjct: 377 NLKYAEWSTYVEYFLNGTMGLFLLGWYPDYLDPDDYVWPFL------SESGAKSLGSFYS 430
Query: 473 NPKANELLDELAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLFYEANTQ 524
NP+ L+ E K D K+ E+ ++ EI +DV +PL+ G A Q
Sbjct: 431 NPEVENLMIEARKLTDLEKRTEIYYKVQEILARDVPYIPLWQGVATCAAKKQ 482
>gb|AAC46281.1| (AF000365) oligopeptide permease homolog AV [Borrelia burgdorferi]
Length = 529
Score = 80.4 bits (195), Expect = 6e-14
Identities = 123/553 (22%), Positives = 237/553 (42%), Gaps = 82/553 (14%)
Query: 11 GLFFLSTIGIVS-AAEELPREQTLYTAN-SSPPTNANPVYGSNIIPIAGLVFEPLFQLNF 68
GL L ++S +A P++ ++ + PT+ +P + S+ + L+ LF +
Sbjct: 7 GLLILGIATVISCSAMSKPKDDIVFGVGIGNEPTSLDPQFCSD--RLGNLIINELF-VGL 63
Query: 69 MKTELVPWLAEYGKWVSSN--------VFEVKLREGTKWQDGKPLTAEDVKFSF------ 114
++ + P Y ++ N + LR+ W DG +TA ++ S+
Sbjct: 64 LRGD--PKTGGYRPGLAKNWDISYDNTCYTFHLRDDIYWSDGIKITASTIRDSYIMALEN 121
Query: 115 EYYEK------VGLKNWSEYGLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHV 168
E E +KN E+ ++ D+ ++ + E+T + R Y + +L +
Sbjct: 122 ELDEPHINLLTSKIKNAQEFYETKLNA-DEVGVKVINEQTLEITLSRPARYFLDMLTHPI 180
Query: 169 FKNIDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKY 228
F I VK + +V SGP+KL + + ++ +N+ ++ A+ +
Sbjct: 181 FIPIPTHIVKKFGNKWTSSENMVTSGPFKLKRRILNEEISLEKNEKFYDAKNVAI---NE 237
Query: 229 IVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMYF 288
++ + + + +M+ ++D + + L N I+ R ++ + I +F
Sbjct: 238 LIFVTINDTRRIYSMYEHNEIDA---IFNNIPLSLINELIL----REDFYSADINQIGFF 290
Query: 289 --NTKHKPLDNPLVRKAIAEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIK 346
NT KPL+N VR+A+A A+ + + L N K+ ++ +S I
Sbjct: 291 SLNTNVKPLNNVKVREALALAVDRETLTYR----------VLDNNFKATRK---ISPNIN 337
Query: 347 EYGW----KYCDPQDAAKLLDEAGIKDTDGDGWR----EYNGKDLVLTFAACGPCSDWMQ 398
Y + K +P+ A KLL EAG DG + +YN DL A+ S W
Sbjct: 338 NYNYGKKLKPYNPRKAEKLLAEAGY--PDGKNFPTLTIKYNKNDLEKEVASFIQ-SQWK- 393
Query: 399 AVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFDLTMH-WAGTFESDPYSVYHNLMYY 457
KV+ I V++ W +S G++++++ W G + DP + + N+
Sbjct: 394 ---------KVLNIDVEIEPETWVNHISNILKGQYEISVRSWQGDY-LDPMA-FFNIFET 442
Query: 458 KNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLK-DVSAVPLYMGT 516
KN A++G Y NP+ +EL+ + DE ++E+L+++ EI ++ D +P+Y
Sbjct: 443 KN---SHFASYG-YSNPELDELIIKSDLEEDEKLRLEILKKIEEIIIENDYPIIPIYSVA 498
Query: 517 LFYEANTQYWANW 529
Y W W
Sbjct: 499 GNYLFKNDKWLGW 511
>pir||F81253 probable peptide ABC-transport system periplasmic peptide-binding
protein Cj1584c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6969001|emb|CAB73572.1|
(AL139079) putative peptide ABC-transport system
periplasmic peptide-binding protein [Campylobacter
jejuni]
Length = 511
Score = 80.4 bits (195), Expect = 6e-14
Identities = 120/497 (24%), Positives = 224/497 (44%), Gaps = 72/497 (14%)
Query: 13 FFLSTIGIVSAAEELPREQTLYTANSSPPTNANPVYGSNIIPIAGLVFEPLFQLNFMKTE 72
F L + ++ ++P++ TL A + NP Y + + LVF L + +
Sbjct: 5 FVLLFLLFLNLEAKIPKD-TLIIAVENEIARINPAYSEDHDAVINLVFSGLTRFD-ENMS 62
Query: 73 LVPWLAEYGKWVSSN---VFEVKLREGTKWQDGKPLTAEDVKFSFEYYEKVGLKNWSEY- 128
L P LA+ W S V+++ LR+ W DG +A+DVKFS E + K N S Y
Sbjct: 63 LKPDLAK--SWDISKDGLVYDIFLRDDVLWHDGVKFSADDVKFSIEAF-KNPKNNSSIYV 119
Query: 129 ---GLREIKVVDDRTIQF-VFEKTPNVWAWRNQLYRVLILPEHVFKNIDPKNVKTMTFLG 184
++ +++++ ++ +F+ P A+ + L + +LP+H+ +N +N+ T +F
Sbjct: 120 NFEDIKSVEILNPSHVKITLFKPYP---AFLDAL-SIGMLPKHLLEN---ENLNTSSF-- 170
Query: 185 DEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMF 244
+ +G+GPYK K + F N+ ++ + + P+ I++ ++ A+
Sbjct: 171 --NQNPIGTGPYKFVKWKKGEYVEFKANEHFYLDK---VKTPRLIIK-HIFDPSIASAEL 224
Query: 245 LRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMYFNTKHKPLDNPLVRKAI 304
G +D V ++ + K + N ++ + ++ FN ++ L + VR+A+
Sbjct: 225 KNGKIDAALIDVSLLNIFKNDENFGILREKSADYRALM-----FNLDNEFLKDLKVRQAL 279
Query: 305 AEAICPAQIVKQGPISDLPDQTPLGN--IMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLL 362
A+ IVK + L D + N + +SW S+ K Y KY DP+ A LL
Sbjct: 280 NYAVDKESIVK----NLLHDYAFVANHPLERSWAN----SKNFKIY--KY-DPKKAEDLL 328
Query: 363 DEAGIKDTDGDGWREYNGKDLVLTFAACGPCSDWMQAVEIVVNQLKVIGI-KVDVRKYDW 421
AG K + DG E +GK +L F +D + ++ + GI + + RK
Sbjct: 329 VSAGFK-KNKDGNFEKDGK--ILEFEIWAMSNDPL--------RVSLAGILQSEFRKIGV 377
Query: 422 GTMVSKQQAGEFDLT------MHWAGTFESDPYSVYHNLMYYKNETDKG----GANFGNY 471
+ V + AG FD + + W + D +H +++ D G NFG+Y
Sbjct: 378 VSKVVAKPAGSFDYSKVDSFLIGWGSPLDPD----FHTFRVFESSQDSALNDEGWNFGHY 433
Query: 472 YNPKANELLDELAKTAD 488
++ K + L + T++
Sbjct: 434 HDKKVDIALQKARNTSN 450
>gi|11496929 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein (oppAV) [Borrelia burgdorferi]
>gi|7442330|pir||B70211 oligopeptide ABC transporter,
periplasmic oligopeptide-binding protein (oppAV) homolog
- Lyme disease spirochete plasmid A/lp54
>gi|2690261|gb|AAC66262.1| (AE000790) oligopeptide ABC
transporter, periplasmic oligopeptide-binding protein
(oppAV) [Borrelia burgdorferi]
Length = 529
Score = 80.0 bits (194), Expect = 8e-14
Identities = 122/553 (22%), Positives = 236/553 (42%), Gaps = 82/553 (14%)
Query: 11 GLFFLSTIGIVS-AAEELPREQTLYTAN-SSPPTNANPVYGSNIIPIAGLVFEPLFQLNF 68
GL L ++S +A P++ ++ + PT+ +P + S+ + L+ LF +
Sbjct: 7 GLLILGIATVISCSAMSKPKDDIVFGVGIGNEPTSLDPQFCSD--RLGNLIINELF-VGL 63
Query: 69 MKTELVPWLAEYGKWVSSN--------VFEVKLREGTKWQDGKPLTAEDVKFSFEYYEKV 120
++ + P Y ++ N + LR+ W DG +TA ++ S+ +
Sbjct: 64 LRGD--PKTGGYRPGLAKNWDISYDNTCYTFHLRDDIYWSDGIKITASTIRDSYIMALEN 121
Query: 121 GL------------KNWSEYGLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHV 168
L KN E+ ++ D+ ++ + E+T + R Y + +L +
Sbjct: 122 ELDVPHINLLTSKIKNAQEFYETKLNA-DEVGVKVINEQTLEITLSRPARYFLDMLTHPI 180
Query: 169 FKNIDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKY 228
F I VK + +V SGP+KL + + ++ +N+ ++ A+ +
Sbjct: 181 FIPIPTHIVKKFGNKWTSSENMVTSGPFKLKRRILNEEISLEKNEKFYDAKNVAI---NE 237
Query: 229 IVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMYF 288
++ + + + +M+ ++D + + L N I+ R ++ + I +F
Sbjct: 238 LIFVTINDTRRIYSMYEHNEIDA---IFNNIPLSLINELIL----REDFYSADINQIGFF 290
Query: 289 --NTKHKPLDNPLVRKAIAEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIGVSQLIK 346
NT KPL+N VR+A+A A+ + + L N K+ ++ +S I
Sbjct: 291 SLNTNVKPLNNVKVREALALAVDRETLTYR----------VLDNNFKATRK---ISPNIN 337
Query: 347 EYGW----KYCDPQDAAKLLDEAGIKDTDGDGWR----EYNGKDLVLTFAACGPCSDWMQ 398
Y + K +P+ A KLL EAG DG + +YN DL A+ S W
Sbjct: 338 NYNYGKKLKPYNPRKAEKLLAEAGY--PDGKNFPTLTIKYNKNDLEKEVASFIQ-SQWK- 393
Query: 399 AVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFDLTMH-WAGTFESDPYSVYHNLMYY 457
KV+ I V++ W +S G++++++ W G + DP + + N+
Sbjct: 394 ---------KVLNIDVEIEPETWVNHISNILKGQYEISVRSWQGDY-LDPMA-FFNIFET 442
Query: 458 KNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLK-DVSAVPLYMGT 516
KN A++G Y NP+ +EL+ + DE ++E+L+++ EI ++ D +P+Y
Sbjct: 443 KN---SHFASYG-YSNPELDELIIKSDLEEDEKLRLEILKKIEEIIIENDYPIIPIYSVA 498
Query: 517 LFYEANTQYWANW 529
Y W W
Sbjct: 499 GNYLFKNDKWLGW 511
>dbj|BAB04286.1| (AP001509) nickel transport system (nickel-binding protein)
[Bacillus halodurans]
Length = 539
Score = 78.4 bits (190), Expect = 2e-13
Identities = 135/556 (24%), Positives = 219/556 (39%), Gaps = 88/556 (15%)
Query: 9 LIGLFFLSTIG--IVSAAEELP-------REQTLYTANSSPPTNANP----VYGSNIIPI 55
LI LF +S I +V AE E T + S P + P VY + +
Sbjct: 8 LILLFVISLISSILVGCAESESGTVSNEGEENTEKSITFSWPRDIGPMNPHVYNPSQLFA 67
Query: 56 AGLVFEPLFQLNFMKTELVPWLAEYGKWVSSN---VFEVKLREGTKWQDGKPLTAEDVKF 112
+++EPL EL P LA+ W S + KLREG ++ DG P AE VK
Sbjct: 68 QSMIYEPLVSYT-EGGELQPHLAD--SWTISEDGKEYTFKLREGVQFSDGTPFNAEIVKK 124
Query: 113 SFE-YYEKVGLKNWSEY--GLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVF 169
+F+ + E L +W L + +VVD+ T + V K P A +
Sbjct: 125 NFDTWIEHSSLHSWLGVMNVLEKTEVVDEFTFKMVL-KEPYYPALQ-------------- 169
Query: 170 KNIDPKNVKTMTFLGDEQ-----------KYLVGSGPYKLYKVVPQQKAIFIRNDDWWGA 218
D V+ + FLG+ K +G+GP+ L + A+F RN ++WG
Sbjct: 170 ---DLAVVRPVRFLGEAGFPDDGDTSQGIKEPIGTGPWMLSDYKQDEYAVFTRNPNYWGE 226
Query: 219 RYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDV----GTYYVDIVELKKKNPNIVSWLDR 274
P + + + F G+LD+ G +D K++ + L
Sbjct: 227 S----PKIDKVTVKIIPDAETRVLAFESGELDLIFGEGVISMDAFNQLKESGQYGTDLSE 282
Query: 275 PPYFPPVVPVIMYFNTKHKPLDNPLVRKAIAEAICPAQIVKQGPISDLPDQTPLGNIMKS 334
PV + NT ++ L + VR A+ Q + +G L ++ NI+ +
Sbjct: 283 -----PVGTRSLLLNTSNEKLADLRVRLALHHGF-NKQAMVEGVTLGLEEKA--DNILST 334
Query: 335 WKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREYNGK--DLVLTFAACGP 392
+ EY D + A LDEAG + G RE NG+ +L L + P
Sbjct: 335 NFPYTDIDVEPIEY-----DVEQANAYLDEAGWELPAGKTVREKNGEQLELELIYDKTDP 389
Query: 393 CSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFDLTMHWAGTFESDPYSVYH 452
M E + + IG+K+D+ + T + +++AG+FD+ + DP+S
Sbjct: 390 LQKAM--AETMQAEWAAIGVKLDITGLELTTQIQRRRAGDFDVDFWYNYGAPYDPHS--- 444
Query: 453 NLMYYKNETDKGGANFGNYYNPKANELLDELAK----TADEAKQVELLRELTEIWLKDVS 508
+ + G + N E LDE + + DE ++ EL + +
Sbjct: 445 ---FINVVAEAGWGVAEAHSNLSMKEELDEQVRATLASTDETERQELYGSILNTLQEQSV 501
Query: 509 AVPL--YMGTLFYEAN 522
VP+ T+ Y+ N
Sbjct: 502 FVPISYIKKTVVYQEN 517
>gb|AAC67217.1| (U78968) surface lipoprotein DppA [Streptococcus pyogenes]
Length = 542
Score = 76.1 bits (184), Expect = 1e-12
Identities = 103/427 (24%), Positives = 180/427 (42%), Gaps = 80/427 (18%)
Query: 93 LREGTKWQDGKPLTAEDVKFSFEYYEKVGLKNWSEYGLREIKVVDDRTIQFVFEKTPNVW 152
L + K+ +G+P TA+DVKF+++ + G K W ++ ++VV + I + + +
Sbjct: 104 LHDDFKFSNGEPATADDVKFTYDMLKADG-KAWDLTFIKNVEVVGENQINIHLTEAHSTF 162
Query: 153 AWRNQLYRVLILPEHVFKNIDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRN 212
QL + I+P+ + + N +GSGPY + + ++AIF+RN
Sbjct: 163 T--AQLTEIPIVPKKHYNDKYKSNP-------------IGSGPYMVKEYKAGEQAIFVRN 207
Query: 213 DDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLR-GDLDVGTYYVDIVELKKKNPNIVSW 271
W G + P + +V ++ A L GD+D+ ++ + K K +
Sbjct: 208 PYWHGKK------PYFKKWTWVLLDENTALAALESGDVDMIYATPELADKKVKGTRL--- 258
Query: 272 LDRPP------YFPPVVPVIMYFNTKHKPLDN-----PLVRKAIAEAICPAQIVKQ---- 316
LD P P V ++ ++ P+ N P +RKA+ + +++
Sbjct: 259 LDIPSNDVRGLSLPYVKKGVITDSSDGYPVGNDVTSDPAIRKALTIGLNRQKVLDTVLNG 318
Query: 317 --GPISDLPDQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDG 374
P + D+TP N K I ++L K A +LL +AG K+ DG
Sbjct: 319 YGKPAYSIIDKTPFWNP----KTAIKNNKLAK-----------AKQLLTKAGWKE-QADG 362
Query: 375 WREYNGKDLVLTFAACGPCSDWMQ---AVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAG 431
R+ DL F P +D ++ AVE V Q K +GI + ++ +W M +K
Sbjct: 363 SRKKG--DLDAPFDLYYPTNDQLRANLAVE-VAEQAKTLGITIKLKASNWDEMATKSH-- 417
Query: 432 EFDLTMHWAGTFESDPYSVYHNLMYYKNE----TDKGGANFGNYYNPKANELLDELAKTA 487
D + +AG +H +Y++ KG N Y NP + LD+ ++
Sbjct: 418 --DSALLYAG-------GRHHAQQFYESHHPSLAGKGWTNITFYNNPTVTKYLDKAMTSS 468
Query: 488 DEAKQVE 494
D K E
Sbjct: 469 DLDKANE 475
>pir||B83082 probable binding protein component of ABC transporter PA4502
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950742|gb|AAG07890.1|AE004864_2 (AE004864) probable
binding protein component of ABC transporter
[Pseudomonas aeruginosa]
Length = 531
Score = 74.1 bits (179), Expect = 4e-12
Identities = 109/496 (21%), Positives = 201/496 (39%), Gaps = 76/496 (15%)
Query: 56 AGLVFEPLFQLNFMKTELVPWLAEYGKW-VSSN--VFEVKLREGTKW------QDGKPLT 106
A VF L TE++P LAE +W VS++ + LR G K+ + + L
Sbjct: 52 AETVFNRLLAFRPGTTEVIPGLAE--RWDVSADGLSYTFHLRPGVKFHTTDYFKPTRSLN 109
Query: 107 AEDVKFSFE------------------YYEKVGLKNWSEYGLREIKVVDDRTIQFVFEKT 148
A+DV ++F+ Y++ +G+ ++ ++ VD+ T++FV +
Sbjct: 110 ADDVLWTFQRALDPKHPWHASALRGYAYFDAMGMGEL----IKSVEKVDELTVRFVLNRP 165
Query: 149 PNVWAWRNQLYRVLILP-EHVFKNIDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKA 207
R + +P ++ + LG +G+GP+ + +
Sbjct: 166 ------EAPFLRDMAMPFASIYSAEYGDQLLAAGKLGQLNNQPIGTGPFVFKRYAKDAQV 219
Query: 208 IFIRNDDWWGARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTY-YVDIVELKKKNP 266
+ N D+ Y G P +V + G+ V Y + V K++P
Sbjct: 220 RYTANPDY----YAGKPPIDNLVFAITLDPNVRMQKVRAGECQVSLYPKPEDVPRLKQDP 275
Query: 267 NI-VSWLDRPPYFPPVVPVIMYFNTKHKPLDNPLVRKAIAEAICPAQIVKQ--GPISDLP 323
N+ V +D ++ + NT+HKPLD+P VR+AI A+ ++ GP + P
Sbjct: 276 NLAVDEIDA------LLTTYIAINTQHKPLDDPRVRQAINLALDKKAMLDAVFGPGAASP 329
Query: 324 DQTPLGNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREYNGKDL 383
P + + I W + DP+ A LL EAG ++ + NG
Sbjct: 330 AVGPYPPTLLGYNHSI--------QDWPH-DPERARALLKEAGAENLRITLFIR-NGTSP 379
Query: 384 VLTFAACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFDLT-MHWAGT 442
+ A A +++ L GI++ +R +WG ++ + +AGE DL+ + WAG
Sbjct: 380 TIPNPAL--------AAQMLQADLAKAGIQLTIRSLEWGELLKRSKAGEHDLSLLGWAGD 431
Query: 443 FESDPYSVYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEI 502
+ NL E+ G N + + L+ + + +D A++ +L + +
Sbjct: 432 NGDPDNFLSPNLSCAAAES---GENQARWCDKDFEALMRKAREVSDPAERAKLYEQAQVV 488
Query: 503 WLKDVSAVPLYMGTLF 518
+ + +PL LF
Sbjct: 489 FHEQAPWIPLAYPKLF 504
>gb|AAC69837.1| (AF076683) oligopeptide transporter putative substrate binding
domain [Staphylococcus aureus]
Length = 486
Score = 73.7 bits (178), Expect = 6e-12
Identities = 111/489 (22%), Positives = 206/489 (41%), Gaps = 48/489 (9%)
Query: 45 NP-VYGSNIIPIAGLVFEPLFQLNFMKTELVPWLAEYGKWVSSN---VFEVKLREGTKWQ 100
NP VYG ++ +++EPL + K + P LA+ KW S + LR+ K+
Sbjct: 2 NPHVYGGSM-SAESMIYEPLVRNT--KDGIKPLLAK--KWDVSEDGKTYTFHLRDDVKFH 56
Query: 101 DGKPLTAEDVKFSFE-YYEKVGLKNWSEYG--LREIKVVDDRTIQFVFEKTPNVWAWRNQ 157
DG P A+ VK + + E L +W + + +KV D T++ ++ A++
Sbjct: 57 DGTPFDADAVKKNIDAVQENKKLHSWLKISTLIDNVKVKDKYTVELNLKE-----AYQPA 111
Query: 158 LYRVLILPEHVFKNIDPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWG 217
L + + +VF + PK+ K T D K G+GP+KL + + A F +ND +WG
Sbjct: 112 LAELAMPRPYVF--VSPKDFKNGT-TKDGVKKFDGTGPFKLGEHKKDESADFNKNDQYWG 168
Query: 218 ARYFGLPAPKYIVQLYVQSNDQAANMFLR-GDL------DVGTYYVDIVELKKKNPNIVS 270
+ + VQ V + A + ++ G+ D GT +D LK+
Sbjct: 169 EK-----SKLNKVQAKVMPAGETAFLSMKKGETNFAFTDDRGTDSLDKDSLKQLKDTGDY 223
Query: 271 WLDRPPYFPPVVPVIMYFNT--KHKPLDNPLVRKAIAEAICPAQIVKQGPISDLPDQTPL 328
+ R P+ ++ N+ K + + VR+AI + +I K+ I D + P
Sbjct: 224 QVKRSQ---PMNTKMLVVNSGKKDNAVSDKTVRQAIGHMVNRDKIAKE--ILD-GQEKPA 277
Query: 329 GNIMKSWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREYNGKDLVLTFA 388
+ I ++Y D + A LLDEAG K R+ +GK+L +
Sbjct: 278 TQLFAKNVTDINFDMPTRKY-----DLKKAESLLDEAGWKKGKDSDVRQKDGKNLEMAMY 332
Query: 389 ACGPCSDWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFDLTMHWAGTFESDPY 448
S + E + + K +GIK+++ + ++ +G++DL + DP
Sbjct: 333 YDKGSSSQKEQAEYLQAEFKKMGIKLNINGETSDKIAERRTSGDYDLMFNQTWGLLYDPQ 392
Query: 449 SVYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVS 508
S + +K + A G K +D+ K + ++ + + + + +
Sbjct: 393 S---TIAAFKEKNGYESATSGIENKDKIYNSIDDAFKIQNGKERSDAYKNILKQIDDEGI 449
Query: 509 AVPLYMGTL 517
+P+ G++
Sbjct: 450 FIPISHGSM 458
>sp|P23843|OPPA_ECOLI PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN PRECURSOR
>gi|7428797|pir||F64871 oligopeptide-binding protein
precursor - Escherichia coli >gi|304925|gb|AAB00918.1|
(M60918) periplasmic oligopeptide binding protein
[Escherichia coli] >gi|1787495|gb|AAC74325.1| (AE000222)
oligopeptide transport; periplasmic binding protein
[Escherichia coli K12] >gi|1805524|dbj|BAA16038.1|
(D90852) Periplasmic oligopeptide-binding protein
precursor. [Escherichia coli]
Length = 543
Score = 71.0 bits (171), Expect = 4e-11
Identities = 122/545 (22%), Positives = 207/545 (37%), Gaps = 86/545 (15%)
Query: 5 LATLLIGLFFLSTIGIVSAAEELPREQTLYTANSSPPTNANP--VYGSNIIPIAGLVFEP 62
LA L+ G L+ V A L +QTL N S + +P + G I+ +FE
Sbjct: 15 LAALMAGNVALAAD--VPAGVTLAEKQTLVRNNGSEVQSLDPHKIEGVPESNISRDLFEG 72
Query: 63 LFQLNFMKTELVPWLAEYGKWVSSNVFEVKLREGTKWQDGKPLTAEDVKFSFEYYEKVGL 122
L ++ + P +AE + V+ LR+ KW DG P+TA+D F + + V
Sbjct: 73 LL-VSDLDGHPAPGVAESWDNKDAKVWTFHLRKDAKWSDGTPVTAQD--FVYSWQRSVDP 129
Query: 123 KNWSEY----------GLREI------------KVVDDRTIQFVF-EKTPNVWAWRNQLY 159
S Y G+ EI K +DD T++ E P Y
Sbjct: 130 NTASPYASYLQYGHIAGIDEILEGKKPITDLGVKAIDDHTLEVTLSEPVP-------YFY 182
Query: 160 RVLILPEHVFKNIDPKNVKTMTFLGD---EQKYLVGSGPYKLYKVVPQQKAIFIRNDDWW 216
++L+ P + P + G+ + +V +G Y L V ++ + R+ +W
Sbjct: 183 KLLVHP-----STSPVPKAAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVLERSPTYW 237
Query: 217 GARYFGLPAPKYIVQLYVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPP 276
+ L + S N + G++D+ + I +K I + P
Sbjct: 238 NN---AKTVINQVTYLPIASEVTDVNRYRSGEIDMTNNSMPIELFQKLKKEIPDEVHVDP 294
Query: 277 YFPPVVPVIMYFNTKHKPLDNPLVRKAIA----EAICPAQIVKQGPISDLPDQTPLGNIM 332
Y + N + P ++ VR A+ I ++ QG + P +
Sbjct: 295 Y---LCTYYYEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKAQGNMPAYGYTPPYTDGA 351
Query: 333 K-SWKEKIGVSQLIKEYGWKYCDPQDAAKLLDEAGIKDTDGDGWREYNGKDLVLTFAACG 391
K + E G SQ + ++A KLL EAG D LT
Sbjct: 352 KLTQPEWFGWSQEKRN--------EEAKKLLAEAGYT------------ADKPLTINLLY 391
Query: 392 PCSDWMQAVEIVVNQL--KVIGIKVDVRKYDWGTMVSKQQAGEFDLT-MHWAGTFESDPY 448
SD + + I + L K IG+ V + +W T + + G FD+ W + ++P
Sbjct: 392 NTSDLHKKLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADY-NEPT 450
Query: 449 SVYHNLMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVS 508
S + ++ N +Y +P + ++ E K DEA++ L + + KD +
Sbjct: 451 SFLNTML------SNSSMNTAHYKSPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSA 504
Query: 509 AVPLY 513
VP+Y
Sbjct: 505 IVPVY 509
>pir||G83083 probable binding protein component of ABC transporter PA4496
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950735|gb|AAG07884.1|AE004863_4 (AE004863) probable
binding protein component of ABC transporter
[Pseudomonas aeruginosa]
Length = 537
Score = 70.2 bits (169), Expect = 6e-11
Identities = 117/545 (21%), Positives = 209/545 (37%), Gaps = 100/545 (18%)
Query: 20 IVSAAEELPREQTLYTANSSPP--TNANPVYGSNIIPIAGLVFEPLFQLNFMKTELVPWL 77
+V+A + ++ + SP A G++ A VF L Q T+++P L
Sbjct: 20 LVAAVPQAFASNLIFCSEGSPAGFDPAQYTTGTDFDAAAETVFNRLTQFERGGTKVLPGL 79
Query: 78 AEYGKWVSSN---VFEVKLREGTKWQDG------KPLTAEDVKFSFE------------- 115
AE W S+ + LR+G K+ + A+DV F+FE
Sbjct: 80 AE--SWDVSDDGKTYTFHLRKGVKFHSTDYFKPTREFNADDVLFTFERMLDKDHPFRKAY 137
Query: 116 -----YYEKVGLKNWSEYGLREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFK 170
Y+ +GL + + ++ +D+ T++F + + L +P F
Sbjct: 138 PTEFPYFTDMGL----DKNIARVEKLDEHTVKFTLNEVDAAFIQN------LAMP---FP 184
Query: 171 NIDPKNVKTMTF----LGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAP 226
+I D + +G+GP+ + + F N D+W P
Sbjct: 185 SIQSAEYAAQLLKQGKASDINQKPIGTGPFVFSRYQKDAQIRFKGNKDYWK------PDE 238
Query: 227 KYIVQLYVQSNDQAANMFLRGDLDVGTYYVDI------VELKKKNPNIVSWLDRPPYFPP 280
+ L N A+ + L G + + ++ KK+PN L+ P
Sbjct: 239 VKVDNLIFAINTDASVRAQK--LKAGECQITLNPRPADLDALKKDPN----LNLPSQAGF 292
Query: 281 VVPVIMYFNTKHKPLDNPLVRKAIAEAICPAQIVKQGPISDLPDQTPLGNIMKSWKEKIG 340
+ I Y N HKP D VR+A+ A+ I+ G W
Sbjct: 293 NLGYIAY-NVTHKPFDKLEVRQALDMAVNKKAII-DAVYQGAGQLASNGMPPTQWS---- 346
Query: 341 VSQLIKEYGWKYCDPQDAAKLLDEAGIKD-TDGDGW-----REYNGKDLVLTFAACGPCS 394
+ IK+ + DP A +LL +AG+ + T+ W R YN ++
Sbjct: 347 YDETIKDAPY---DPAKARELLKKAGVAEGTEITLWAMPVQRPYNPNAKLMA-------- 395
Query: 395 DWMQAVEIVVNQLKVIGIKVDVRKYDWGTMVSKQQAGEFD-LTMHWAGTFESDPYSVYHN 453
E++ N IGIK + Y+WG + + + GE D + + W+G DP + +
Sbjct: 396 ------EMLQNDWAKIGIKAKIVTYEWGEYIKRAKGGEHDAMLIGWSGD-NGDPDN-WLG 447
Query: 454 LMYYKNETDKGGANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVSAVPLY 513
+Y + D G NF + + ++L+ + +T D+ K+ EL ++ I + V P+
Sbjct: 448 TLYGCDAVD--GNNFSKWCDAGYDKLVKDAKRTTDQGKRTELYKQAQHILKEQVPITPIA 505
Query: 514 MGTLF 518
T++
Sbjct: 506 HSTVY 510
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.422
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 256772237
Number of Sequences: 2977
Number of extensions: 11797338
Number of successful extensions: 30227
Number of sequences better than 1.0e-10: 58
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 29987
Number of HSP's gapped (non-prelim): 73
length of query: 633
length of database: 189,106,746
effective HSP length: 55
effective length of query: 578
effective length of database: 156,189,961
effective search space: 90277797458
effective search space used: 90277797458
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 168 (69.9 bits)