BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1344 (dppB-3) DE:dipeptide ABC transporter, permease protein
(dppB)
(330 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75068 dipeptide abc transporter, permease protein (dppb) P... 666 0.0
pir||B71163 probable oligopeptide transport system permease prot... 592 e-168
pir||A75142 oligopeptide transport system permease protein appb ... 439 e-122
pir||D72282 oligopeptide ABC transporter, permease protein - The... 405 e-112
pir||H72428 oligopeptide ABC transporter, permease protein - The... 295 5e-79
emb|CAC12449.1| (AL445067) dipeptide transport system, permease ... 246 3e-64
pir||H72420 oligopeptide ABC transporter, permease protein - The... 228 6e-59
pir||B72393 oligopeptide ABC transporter, permease protein - The... 225 7e-58
pir||C71130 probable oligopeptide transport permease protein APP... 217 1e-55
gb|AAK43148.1| ABC transporter, permease [Sulfolobus solfataricus] 217 2e-55
pir||G82301 peptide ABC transporter, permease protein VC0619 [im... 201 1e-50
pir||C72284 oligopeptide ABC transporter, permease protein - The... 198 6e-50
pir||D75202 dipeptide abc transporter, dipeptide-binding protein... 185 6e-46
gb|AAK42786.1| ABC transporter, permease protein [Sulfolobus sol... 185 8e-46
pir||E70343 transporter (OppBC family) - Aquifex aeolicus >gi|29... 177 1e-43
emb|CAA64609.1| (X95287) archaeal ABC-transporter system [Methan... 172 6e-42
gi|11499357 dipeptide ABC transporter, permease protein (dppB) [... 162 5e-39
gb|AAK43157.1| Maltose ABC transporter, permease [Sulfolobus sol... 161 9e-39
pir||C83082 probable permease of ABC transporter PA4503 [importe... 161 2e-38
gb|AAK42738.1| Dipeptide ABC transporter permease protein (dppB-... 154 1e-36
sp|P37316|DPPB_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 153 2e-36
emb|CAC11413.1| (AL445063) ABC-transporter (orf B) related prote... 153 3e-36
pir||F75454 peptide ABC transporter, permease protein - Deinococ... 153 3e-36
gi|10955090 moaB [Agrobacterium tumefaciens] >gi|11277277|pir||T... 152 6e-36
pir||A72289 oligopeptide ABC transporter, permease protein - The... 151 1e-35
dbj|BAB07362.1| (AP001519) dipeptide ABC transporter (permease) ... 151 1e-35
pir||B72367 oligopeptide ABC transporter, permease protein - The... 150 2e-35
dbj|BAB04287.1| (AP001509) nickel transport system (permease) [B... 149 4e-35
gb|AAC67218.1| (U78968) transmembrane transport protein DppB [St... 148 9e-35
dbj|BAB07357.1| (AP001519) oligopeptide ABC transporter (permeas... 147 1e-34
sp|P42062|APPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 146 3e-34
gb|AAG22035.1|AF305387_2 (AF305387) OppB [Bacillus thuringiensis] 146 3e-34
pir||B38447 oligopeptide permease oppB homolog - Bacillus subtil... 145 1e-33
sp|P24138|OPPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 145 1e-33
gb|AAK41521.1| Oligo/dipeptide transport, permease protein (dppB... 144 1e-33
dbj|BAB05516.1| (AP001513) nickel ABC transporter (permease) [Ba... 144 1e-33
dbj|BAA94700.1| (AB026907) dipeptide transporter DppB homolog [O... 144 2e-33
sp|Q53191|Y4TP_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE P... 142 5e-33
sp|P45054|OPPB_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 141 1e-32
pir||G71951 dipeptide transport system permease protein - Helico... 141 1e-32
sp|P75798|YLIC_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 140 2e-32
pir||C64557 dipeptide ABC transporter, permease protein - Helico... 140 2e-32
emb|CAC11408.1| (AL445063) dipeptide transport system permease p... 139 4e-32
pir||A75027 oligopeptide transport permease protein appb PAB1194... 138 7e-32
sp|P94311|DPPB_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 138 1e-31
emb|CAC16444.1| (AL450165) putative oligopeptide ABC transporter... 138 1e-31
pir||F72720 probable oligopeptide transport system permease prot... 138 1e-31
gb|AAK41511.1| Oligo/dipeptide transport, permease protein (dppB... 137 2e-31
pir||C70141 oligopeptide ABC transporter, permease protein (oppB... 137 2e-31
sp|P77308|YDDR_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 136 5e-31
pir||C82242 oligopeptide ABC transporter, permease protein VC109... 135 6e-31
pir||F72451 probable peptide transport system permease protein A... 134 1e-30
sp|P45096|DPPB_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 132 4e-30
gb|AAC64253.1| (AF042861) putative OppB [Treponema denticola] 132 6e-30
gb|AAC69838.1| (AF076683) oligopeptide transporter putative memb... 132 6e-30
gb|AAF73091.1|AF103793_2 (AF103793) transmembrane protein OppB [... 132 6e-30
pir||B72617 probable dipeptide transport system permease protein... 131 9e-30
pir||S76320 hypothetical protein - Synechocystis sp. (strain PCC... 131 2e-29
pir||B75381 peptide ABC transporter, permease protein - Deinococ... 130 2e-29
pir||C71841 probable peptide ABC transporter, ATP-binding protei... 130 3e-29
pir||B82356 peptide ABC transporter, permease protein VC0172 [im... 130 3e-29
pir||C64676 oligopeptide ABC transporter, permease protein - Hel... 128 1e-28
gi|10955082 agaB [Agrobacterium tumefaciens] >gi|11277276|pir||T... 127 1e-28
sp|P26903|DPPB_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 126 4e-28
pir||B70789 probable peptidetransport system permease - Mycobact... 125 5e-28
pir||F72215 oligopeptide ABC transporter, permease protein - The... 125 5e-28
gb|AAG20589.1| (AE005129) dipeptide ABC transporter permease; Dp... 125 5e-28
dbj|BAB04067.1| (AP001508) oligopeptide ABC transporter (permeas... 125 7e-28
pir||E72424 oligopeptide ABC transporter, permease protein - The... 123 3e-27
pir||F75529 probable peptide ABC transporter, permease protein -... 123 3e-27
gb|AAA62688.1| (M57689) sporulation protein [Bacillus subtilis] 123 4e-27
sp|P31132|OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 122 5e-27
pir||A71212 probable oligopeptide transport system permease prot... 122 5e-27
sp|P08005|OPPB_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 122 8e-27
gb|AAB67064.1| (U94729) putative transmembrane protein [Salmonel... 122 8e-27
pir||E72107 peptide ABC transporter, permease protein CP0568 [im... 122 8e-27
pir||E72300 oligopeptide ABC transporter, permease protein - The... 121 1e-26
sp|Q07742|OPPB_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 120 2e-26
sp|P50989|OPPB_LACLC OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 120 3e-26
dbj|BAA14776.1| (D90763) Oligopeptide transport system permease ... 120 3e-26
pir||F72371 oligopeptide ABC transporter, permease protein - The... 119 5e-26
gi|10954708 hypothetical ABC-transporter gene~similar to agaB ge... 119 5e-26
dbj|BAB03748.1| (AP001507) oligopeptide ABC transporter (permeas... 118 7e-26
sp|P33914|YEJB_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 118 9e-26
pir||T35939 probable transport permease protein - Streptomyces c... 118 9e-26
dbj|BAB05794.1| (AP001514) oligopeptide ABC transporter (permeas... 118 9e-26
gb|AAG20458.1| (AE005118) oligopeptide ABC permease; AppB [Halob... 118 1e-25
pir||T34758 oligopeptide transport system integral membrane prot... 117 2e-25
pir||F83419 probable permease of ABC transporter PA1809 [importe... 116 5e-25
gb|AAA62689.1| (M57689) sporulation protein [Bacillus subtilis] 115 6e-25
gb|AAC69843.1| (AF076684) oligopeptide transporter putative memb... 115 6e-25
pir||D71014 probable dipeptide transport system permease protein... 114 2e-24
pir||B75118 dipeptide abc transporter, permease protein (dppb) P... 114 2e-24
emb|CAC05748.1| (AL391751) putative peptide transport system int... 113 2e-24
sp|P33591|NIKB_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NI... 112 5e-24
pir||S47696 nickel transport system permease protein nikB - Esch... 112 7e-24
pir||F81699 peptide ABC transporter, permease protein TC0472 [im... 111 2e-23
gb|AAC18097.1| (AF058302) membrane protein of putative ABC trans... 111 2e-23
dbj|BAA97044.1| (AB015765) SapB [Vibrio alginolyticus] 110 2e-23
pir||H83388 probable permease of ABC transporter PA2059 [importe... 110 2e-23
gi|10954943 Probable accD [Agrobacterium tumefaciens] >gi|649829... 110 3e-23
pir||C71545 probable oligopeptide permease - Chlamydia trachomat... 109 3e-23
dbj|BAB13783.1| (AB038238) NikB [Vibrio parahaemolyticus] 109 5e-23
pir||F82377 ABC transporter, permease protein VCA1099 [imported]... 109 6e-23
pir||T03433 probable transport protein accD - Agrobacterium tume... 108 8e-23
pir||S77118 oligopeptide transport system permease protein appB ... 108 1e-22
pir||D75573 peptide ABC transporter, permease protein - Deinococ... 108 1e-22
pir||C82170 peptide ABC transporter, permease protein VC1681 [im... 106 4e-22
emb|CAA92398.1| (Z68203) OppB homologue [Rhizobium sp.] 102 6e-21
sp|Q10611|YC83_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN... 102 8e-21
gi|10955049 ophB [Agrobacterium tumefaciens] >gi|7442423|pir||S7... 95 1e-18
pir||E81253 probable peptide ABC-transport system permease prote... 95 1e-18
pir||A72537 probable oligopeptide transport permease protein APE... 94 3e-18
gb|AAG09258.1| (AF176664) EppB [EDTA-degrading bacterium BNC1] 93 4e-18
emb|CAA61523.1| (X89237) oligopeptidepermease [Streptococcus pyo... 92 9e-18
gb|AAG20451.1| (AE005117) dipeptide ABC transporter permease; Dp... 91 1e-17
sp|P75554|OPPB_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 90 3e-17
pir||T45279 oligopeptide transport membrane protein bldKC [impor... 87 4e-16
pir||C82876 oligopeptide transport system permease protein UU562... 85 1e-15
pir||D71510 probable oligopeptide permease - Chlamydia trachomat... 82 1e-14
sp|P47323|OPPB_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 82 1e-14
pir||G81668 peptide ABC transporter, permease protein, probable ... 82 1e-14
pir||D72059 peptide ABC transporter, permease protein, probable ... 78 1e-13
dbj|BAA98805.1| (AP002547) oligopeptide permease [Chlamydophila ... 78 1e-13
emb|CAA68074.1| (X99740) oligopeptide transport system permease ... 77 3e-13
sp|P18793|AMIC_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 73 4e-12
>pir||H75068 dipeptide abc transporter, permease protein (dppb) PAB1344 -
Pyrococcus abyssi (strain Orsay)
>gi|5458958|emb|CAB50445.1| (AJ248287) dipeptide ABC
transporter, permease protein (dppB) [Pyrococcus abyssi]
Length = 330
Score = 666 bits (1700), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MGFKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYE 60
MGFKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYE
Sbjct: 1 MGFKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYE 60
Query: 61 DLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWII 120
DLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWII
Sbjct: 61 DLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWII 120
Query: 121 GNWLGALAGKNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVP 180
GNWLGALAGKNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVP
Sbjct: 121 GNWLGALAGKNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVP 180
Query: 181 SFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLT 240
SFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLT
Sbjct: 181 SFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLT 240
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM
Sbjct: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
Query: 301 VIIAVLVANFIIDIVYALIDPRVRVSYEEG 330
VIIAVLVANFIIDIVYALIDPRVRVSYEEG
Sbjct: 301 VIIAVLVANFIIDIVYALIDPRVRVSYEEG 330
>pir||B71163 probable oligopeptide transport system permease protein AppB -
Pyrococcus horikoshii >gi|3256908|dbj|BAA29591.1|
(AP000002) 330aa long hypothetical oligopeptide
transport system permease protein AppB [Pyrococcus
horikoshii]
Length = 330
Score = 592 bits (1510), Expect = e-168
Identities = 280/330 (84%), Positives = 310/330 (93%)
Query: 1 MGFKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYE 60
MGF YLKRKI++Y LTF+FAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLL+FYE
Sbjct: 1 MGFGDYLKRKIIVYVLTFIFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLRFYE 60
Query: 61 DLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWII 120
LYGLNKPLYVQF+NFW +L +GDLGYSILYR VS ++K+ALPYDIAIL PAIVLSW+I
Sbjct: 61 QLYGLNKPLYVQFVNFWVALFKGDLGYSILYRAPVSRLLKNALPYDIAILLPAIVLSWLI 120
Query: 121 GNWLGALAGKNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVP 180
GNWLGA AGKNKKYDKY+MP+FYFLAS+PYFWFAM+LVY +GVK I PYQGAYS +L+P
Sbjct: 121 GNWLGAFAGKNKKYDKYMMPLFYFLASMPYFWFAMLLVYLVGVKAGILPYQGAYSPDLIP 180
Query: 181 SFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLT 240
+FS+ F+VDFLKHWI+PFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKL+T
Sbjct: 181 TFSLKFVVDFLKHWIMPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLMT 240
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
KHAY+NAILPQ+TGLALQLGLMVAGAIATEIVFNYPGVGVLLM AA+SQDYFLLQGGFLM
Sbjct: 241 KHAYKNAILPQITGLALQLGLMVAGAIATEIVFNYPGVGVLLMKAAMSQDYFLLQGGFLM 300
Query: 301 VIIAVLVANFIIDIVYALIDPRVRVSYEEG 330
++I+VLVANF+IDIVYALIDPRVR SY EG
Sbjct: 301 IVISVLVANFVIDIVYALIDPRVRASYLEG 330
>pir||A75142 oligopeptide transport system permease protein appb PAB0628 -
Pyrococcus abyssi (strain Orsay)
>gi|5458361|emb|CAB49850.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT SYSTEM PERMEASE PROTEIN APPB [Pyrococcus
abyssi]
Length = 334
Score = 439 bits (1116), Expect = e-122
Identities = 200/329 (60%), Positives = 262/329 (78%), Gaps = 2/329 (0%)
Query: 2 GFKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYED 61
G K+YL RK +IY LTF FAVT+++++PR+MPGDPI +++ S P+ + L ++
Sbjct: 4 GIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLL-SRFATLPEATKYLHSYFVQ 62
Query: 62 LYGLNKPLYVQFINFWKSLLRGDLGYSILYRDS-VSNIIKHALPYDIAILFPAIVLSWII 120
+GL+KPL+ Q+I+FWK++L GDLG SI Y V+ I+K ALPYD+A+LFPA+V SW +
Sbjct: 63 AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFV 122
Query: 121 GNWLGALAGKNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVP 180
GNWLGALAGKNKK D YLMP+FYFL + PYFWFA++L Y KL FP GAYS ++P
Sbjct: 123 GNWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
Query: 181 SFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLT 240
S S FI D+L HW LPFLSLF+V +G WAIGMRNMIIYE+EADY+RYLE+LG SEK+L
Sbjct: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM 242
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
KHA++NA+LPQVTGLALQLGL+VAG + ++VF+YPG+G +LM ++QDYFL+QG FL+
Sbjct: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
Query: 301 VIIAVLVANFIIDIVYALIDPRVRVSYEE 329
+I+ VLVANF+ID++YA+IDPRVR+SY E
Sbjct: 303 IILTVLVANFVIDLLYAIIDPRVRISYTE 331
>pir||D72282 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981775|gb|AAD36297.1|AE001778_18 (AE001778)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 329
Score = 405 bits (1029), Expect = e-112
Identities = 186/325 (57%), Positives = 250/325 (76%), Gaps = 2/325 (0%)
Query: 4 KQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLY 63
++YL +KI+IY LTF FAVT++W +PR MPG+PI +I+ GL P+ + L ++ +
Sbjct: 2 RKYLTKKILIYILTFFFAVTIDWAIPRFMPGNPINFLISRFAGL-PESVKVLQSYFTQAF 60
Query: 64 GLNKPLYVQFINFWKSLLRGDLGYSI-LYRDSVSNIIKHALPYDIAILFPAIVLSWIIGN 122
GL+KPL+ Q+INFWK+L RGDLG SI +Y V+ +I ALPY + +L PA++LS+ IGN
Sbjct: 61 GLDKPLWEQYINFWKALFRGDLGISIYMYPQPVAKVIARALPYSLIVLLPAVLLSFAIGN 120
Query: 123 WLGALAGKNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSF 182
GA + K+ D + +PVFY L + PYFWF ++L + GV + +FP GAYS + PSF
Sbjct: 121 RFGAFVARKKRLDNFALPVFYTLTASPYFWFGILLAWIFGVVIPLFPLAGAYSFGITPSF 180
Query: 183 SITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLTKH 242
S FI+DFL HW+LPF SLF+VM+G WAIGMRNMIIYELEA+Y RYLEALG+S++L+ K+
Sbjct: 181 SWDFILDFLHHWVLPFGSLFLVMLGGWAIGMRNMIIYELEANYSRYLEALGSSQRLIRKY 240
Query: 243 AYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVI 302
AYRNAILPQ+TGLA+QLG +VAGA+ TEIVF+YPG+G +LM L+QDYFL+QG FL +I
Sbjct: 241 AYRNAILPQITGLAIQLGTVVAGALTTEIVFSYPGIGYILMQGILNQDYFLIQGCFLFII 300
Query: 303 IAVLVANFIIDIVYALIDPRVRVSY 327
+ VL+ANF++DI Y +IDPR+R SY
Sbjct: 301 LGVLLANFLVDIFYVIIDPRIRKSY 325
>pir||H72428 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980514|gb|AAD35124.1|AE001690_18 (AE001690)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 338
Score = 295 bits (747), Expect = 5e-79
Identities = 144/330 (43%), Positives = 216/330 (64%), Gaps = 6/330 (1%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDL-- 62
+YL R+ + +T++ A T+ ++LPR +PG+P+ +++ ++ E + L
Sbjct: 8 KYLLRRFIFLLVTYIVATTIVFILPRAIPGNPLSQILSGLSRVAQANPEAIRAAERTLME 67
Query: 63 -YGLNKPLYVQFINFWKSLLRGDLGYSI-LYRDSVSNIIKHALPYDIAILFPAIVLSWII 120
+GL KP YVQ+ F LRGDLG SI Y V ++I +P+ + +L PA +++WI+
Sbjct: 68 EFGLGKPWYVQYFEFITKALRGDLGTSITFYPRKVIDLIIPVIPWTLILLLPATIVAWIL 127
Query: 121 GNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNL 178
GN LGALA +N DK ++ ++ IPY+W M+ ++ GVKL P QGAYSQ
Sbjct: 128 GNSLGALAAYKRNTWIDKGVLTTSLIVSQIPYYWLGMIFIFLFGVKLGWLPVQGAYSQGT 187
Query: 179 VPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKL 238
+P+ S +F VD LKH+I+PF S+ + +G WAIGMR M+IYEL +DY + E LG +K
Sbjct: 188 IPNLSWSFFVDVLKHYIMPFASIVVSAMGGWAIGMRLMVIYELGSDYAMFSEYLGMKDKR 247
Query: 239 LTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGF 298
+ K+ +RN++LPQ+TGLAL LG ++ GA+ TEIVFNYPG G LL A + DY L+QG F
Sbjct: 248 IFKYVFRNSLLPQITGLALSLGGVLGGALITEIVFNYPGTGYLLFRALTTLDYPLIQGIF 307
Query: 299 LMVIIAVLVANFIIDIVYALIDPRVRVSYE 328
+++I ++ +ANFI+D +YALIDPR+R+ E
Sbjct: 308 VILIASIYLANFIVDFLYALIDPRIRLGQE 337
>emb|CAC12449.1| (AL445067) dipeptide transport system, permease protein (dppB)
related protein [Thermoplasma acidophilum]
Length = 340
Score = 246 bits (621), Expect = 3e-64
Identities = 132/329 (40%), Positives = 205/329 (62%), Gaps = 13/329 (3%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSAL-----GLSPQERETLLKFY 59
+Y+ +KI ++F F+ A+T+N+LLPR+MPG+P ++ N L G++P L
Sbjct: 12 KYIIKKISLFFGIFIGAITVNFLLPRMMPGNPAVVVYNEILKAGGSGVNPAYLHQL---- 67
Query: 60 EDLYGL-NKPLYVQFINFWKSLLRGDLGYSI-LYRDSVSNIIKHALPYDIAILFPAIVLS 117
E YG+ N P+Y Q+ + +L G+LG SI Y + VS I+ ALP+ + ++ +I +S
Sbjct: 68 EVEYGISNAPIYDQYFQYLWNLFHGNLGLSIAFYPEPVSAILAEALPWTLFLVISSITIS 127
Query: 118 WIIGNWLGALAGKNKKYDKYL-MPVF-YFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYS 175
+ +GN LG AG N+ K L + VF F+AS P F A +++ V +IFP GAY
Sbjct: 128 FFLGNRLGRYAGINRNTSKDLAIDVFAMFMASFPAFVLAFIVLDIFSVYGHIFPLGGAYG 187
Query: 176 QNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGAS 235
N+ F++ FI+ + H +LP L++ + +G W +GMRN II L +D++ Y E LG
Sbjct: 188 VNVNMGFNVPFIISVIYHAVLPVLTIILTSLGGWVLGMRNNIIPNLNSDFINYSENLGFK 247
Query: 236 EKLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQ 295
+ + AY+NA+LP +TG A+ +GL V+G I E +F+YPGVG+ ++ A S DY L+Q
Sbjct: 248 DYQIKSIAYKNALLPNLTGFAMSIGLSVSGVIIEESIFSYPGVGLYMITAINSLDYPLMQ 307
Query: 296 GGFLMVIIAVLVANFIIDIVYALIDPRVR 324
G FLMV+IAVL N ++D++Y +DPR+R
Sbjct: 308 GIFLMVVIAVLAGNLVVDLLYGFLDPRIR 336
>pir||H72420 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980560|gb|AAD35166.1|AE001694_2 (AE001694)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 335
Score = 228 bits (576), Expect = 6e-59
Identities = 127/329 (38%), Positives = 196/329 (58%), Gaps = 8/329 (2%)
Query: 4 KQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSAL----GLSPQERETLLKFY 59
++YL +++ YFL +T+ + LPR +P DPIQ I+ + L+P+ L++
Sbjct: 5 RRYLLPRLITYFLVVFVGLTIVFFLPRFLPSDPIQAYIDRLITQGGNLNPEYFNKLVETI 64
Query: 60 EDLYGLNKPLYVQFINFWKSLLRGDLGYSIL-YRDSVSNIIKHALPYDIAILFPAIVLSW 118
++LYGL L+ Q++NFWK LL+GD G S + V +I+ +LP+ +LF V+SW
Sbjct: 65 KELYGLQGSLWNQYVNFWKRLLKGDFGPSYFQFPTPVMKLIRQSLPWTAWLLFVTTVISW 124
Query: 119 IIGNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQ 176
IIGN LG LAG +KK+ K L + + +PY+ A+ L+ L IFP G ++
Sbjct: 125 IIGNILGGLAGYFSDKKWVKILDGIAMVIRPMPYYILALGLLILLAYIFPIFPIGGGFAI 184
Query: 177 NLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE 236
+ +FS ++ LKH LP LSL ++ + SW M+ ++ DYV+Y + G E
Sbjct: 185 GMKFTFSWENLLILLKHAFLPALSLVLIGVFSWFQAMKLVVQSVKTEDYVKYAKMGGVEE 244
Query: 237 K-LLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQ 295
+ ++ ++ RNA+LPQ+TGLAL LG + GA+ TEIVF+YPG+G LL +A + DY LL
Sbjct: 245 RRIVRRYVIRNAMLPQITGLALSLGQIFGGALITEIVFSYPGIGSLLYNAIFTGDYNLLM 304
Query: 296 GGFLMVIIAVLVANFIIDIVYALIDPRVR 324
G + I+ V + +ID++Y L DPRVR
Sbjct: 305 GISTLSILLVTTSILVIDLLYPLFDPRVR 333
>pir||B72393 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980801|gb|AAD35389.1|AE001712_2 (AE001712)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 334
Score = 225 bits (567), Expect = 7e-58
Identities = 126/328 (38%), Positives = 192/328 (58%), Gaps = 7/328 (2%)
Query: 4 KQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKF---YE 60
K YL +++ Y + +TL +L+PRL P DPI+ ++N+ L + E ++K E
Sbjct: 5 KSYLIPRLIQYVYMVVIGITLVFLIPRLSPVDPIEQILNTRLRIQNTTPEAVIKMREVME 64
Query: 61 DLYGLNKPLYVQFINFWKSLLRGDLGYSILYRD-SVSNIIKHALPYDIAILFPAIVLSWI 119
+LYGL L+ Q++N WK LL+GD G S++Y SV ++I+++LP+ I +L ++SW+
Sbjct: 65 ELYGLKGTLWEQYVNLWKRLLKGDFGPSMVYYPASVISLIRNSLPWTIGLLTLTTLISWV 124
Query: 120 IGNWLGALAGKNKKY--DKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQN 177
+G +GA+ G K+ K L + + IPY+ FA+ L+ IFP G +S
Sbjct: 125 LGLVIGAILGYYKESFGSKILTGILMAINPIPYYIFALTLLLLFCYVFPIFPLGGGFSVG 184
Query: 178 LVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGA-SE 236
S S +FI+D +KH LP LSL I+ W +G + ++ E DYV Y +G +
Sbjct: 185 QKISLSWSFILDVIKHGTLPALSLIILGFAGWGLGTKILVQNLREEDYVVYARMMGLRNS 244
Query: 237 KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQG 296
K+L + RNA+LPQVTGL L LG + GA+ TEI+F YPG+G L +A + DY ++
Sbjct: 245 KILFSYVLRNAMLPQVTGLGLSLGGIFGGAMMTEILFTYPGIGTLAYNAVRANDYNVMIA 304
Query: 297 GFLMVIIAVLVANFIIDIVYALIDPRVR 324
IIAV A I+D++Y LIDPR+R
Sbjct: 305 ISFFSIIAVATALLILDLLYPLIDPRIR 332
>pir||C71130 probable oligopeptide transport permease protein APPB - Pyrococcus
horikoshii >gi|3257218|dbj|BAA29901.1| (AP000003) 323aa
long hypothetical oligopeptide transport permease
protein APPB [Pyrococcus horikoshii]
Length = 323
Score = 217 bits (548), Expect = 1e-55
Identities = 118/324 (36%), Positives = 189/324 (57%), Gaps = 9/324 (2%)
Query: 4 KQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLY 63
K Y+ ++ + L F + LN+++ PG+P Q+M E +K E +
Sbjct: 5 KVYIIKRSIQLILVIFFVLFLNFIIINAAPGNPAQLMAGE------YSTEEYIKAIEARW 58
Query: 64 GLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
GL+KP++++F+ + K+LL GDLGYS Y + VS +I + + + P+I+L++++G W
Sbjct: 59 GLDKPIHIRFLIYMKNLLHGDLGYSYRYLEPVSKLIMERIGKTLLLTVPSIILAFLVGVW 118
Query: 124 LGALAGKNK--KYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
L +A + K D L + S+P FW ++L+ GVKL I P G + V S
Sbjct: 119 LARIAARKPGGKLDVSLSIITLIFYSMPSFWLGLLLILVFGVKLGILPIAGMTNIRAVYS 178
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEK-LLT 240
S D LKH +LP +L ++ I ++ R II + DYV+ +A+G S+K +
Sbjct: 179 SSWDKAFDILKHMVLPVTTLMLIQIPAYFRITRGAIIEQSTEDYVKTFDAVGFSKKHIFN 238
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
K+ +RNAILP VT L L+LG +GA EIVF +PG+G LL+ AA ++DY L+ G +L+
Sbjct: 239 KYIFRNAILPPVTILGLRLGYAFSGAALVEIVFGWPGMGRLLLDAAFARDYPLIMGIYLV 298
Query: 301 VIIAVLVANFIIDIVYALIDPRVR 324
+ ++V VA FI D++YA++DPR+R
Sbjct: 299 IAVSVAVAIFITDLLYAVLDPRIR 322
>gb|AAK43148.1| ABC transporter, permease [Sulfolobus solfataricus]
Length = 342
Score = 217 bits (546), Expect = 2e-55
Identities = 121/339 (35%), Positives = 191/339 (55%), Gaps = 12/339 (3%)
Query: 4 KQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALG-------LSPQERETLL 56
+ +L ++ + Y + + +T++++LPRL+PG + +I S +G + Q+ +L
Sbjct: 3 RDFLIKRGIYYIIVWFVGITIDFILPRLIPGSALASIIYSRIGGAGSNYGQNVQQEIQIL 62
Query: 57 KFYEDLYGLNKPLYVQFINFWKSLLRGDLGYSIL-YRDSVSNIIKHALPYDIAILFPAIV 115
L +PLY+Q+ N+ K ++ + G S+ + SVS II A P+ I+ PAIV
Sbjct: 63 VQQLGLAQYQQPLYIQYFNYLKEIVTLNFGVSLTEFPVSVSTIITEAAPWTFGIVIPAIV 122
Query: 116 LSWIIGNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGA 173
S+ IGN LG +A + K D ++ + FL + P F +L+ L + L+IFP G
Sbjct: 123 ASFFIGNLLGRVAALSRGKISDYAILGLMMFLYTFPVFVTGEILIEVLAIDLHIFPTGGQ 182
Query: 174 YS--QNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEA 231
Y+ Q L P+ S+ FI + H ILP L+L + + W +GMRN +I L+ DY+ Y
Sbjct: 183 YNTFQFLKPTMSLPFIWSVIYHAILPTLTLILFSLAGWIMGMRNNMIPILQEDYMNYYRL 242
Query: 232 LGASEKLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDY 291
+G SEK++ AYR A+LP T ++ LG V GA+A E +FNY G+G A DY
Sbjct: 243 MGVSEKMVASKAYRLALLPNFTSFSISLGYSVLGAVAIEYLFNYAGLGYFFNQAITGLDY 302
Query: 292 FLLQGGFLMVIIAVLVANFIIDIVYALIDPRVRVSYEEG 330
LL G F M++ A++++NF+ DI+Y +IDPR EG
Sbjct: 303 PLLSGIFFMLVTAMVLSNFVADIIYTIIDPRTSQEETEG 341
>pir||G82301 peptide ABC transporter, permease protein VC0619 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655052|gb|AAF93785.1| (AE004147) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 328
Score = 201 bits (506), Expect = 1e-50
Identities = 114/325 (35%), Positives = 186/325 (57%), Gaps = 9/325 (2%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG- 64
Y R++ YF L A TLN+++PR MPGDP+ +M A ER +K L G
Sbjct: 3 YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMK---QLLGF 59
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSI-LYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
+ P YVQ++ + KS+L +LG SI Y SV+ ++ A + + + A+++S+ IG+
Sbjct: 60 VEGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSV 119
Query: 124 LGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
LG A + +YD ++ P + ++P AM+ ++ + L+ FP AY+ P
Sbjct: 120 LGIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPD 179
Query: 182 F-SITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLL 239
+ S FI D H +LP IV IG + + MRN +I L DY+ + G SE +++
Sbjct: 180 WTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVV 239
Query: 240 TKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFL 299
+A RNA+LP VT L++ LG+ + G + EI+FNYPG+G +L +A ++DY +LQG L
Sbjct: 240 FNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLL 299
Query: 300 MVIIAVLVANFIIDIVYALIDPRVR 324
++ + +L N + D++Y ++DPR+R
Sbjct: 300 IMTLFMLFFNLLADMLYVVLDPRLR 324
>pir||C72284 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981749|gb|AAD36273.1|AE001776_9 (AE001776)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 334
Score = 198 bits (499), Expect = 6e-50
Identities = 112/329 (34%), Positives = 184/329 (55%), Gaps = 9/329 (2%)
Query: 4 KQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINS----ALGLSPQERETLLKFY 59
K YL +++ YF+ ++ + LPRL+P DP++ + + + P+++E +++
Sbjct: 5 KGYLIPRLLQYFIVTFLGLSAIFFLPRLLPTDPVKQQLQQYQTFGVYIPPEQQEEMMRTL 64
Query: 60 EDLYGLNKPLYVQFINFWKSLLRGDLGYSIL-YRDSVSNIIKHALPYDIAILFPAIVLSW 118
LYGL L+ Q+++FWK LL GD G S + SVS +I ALP+ + +L +LSW
Sbjct: 65 RQLYGLEGTLWEQYLDFWKRLLTGDFGPSFSRFPVSVSKVISQALPWTVGLLSLTTILSW 124
Query: 119 IIGNWLGALAGK-NKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQN 177
II +G + G K++ + L V + IPY+ A++ + IFP G
Sbjct: 125 IIAVIVGGIVGYYRKRWMEALDVVVMIIRPIPYYVMALICLILFAYVFPIFPLSGGIGIG 184
Query: 178 LVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEA-DYVRYLEALGASE 236
SF + I+ +KH LP L+L IV I +W +I+ +++ D+V Y + G +E
Sbjct: 185 QKLSFDLETILSIVKHGTLPALTLMIVGI-AWQFQSMKLIVQIVKSEDHVWYAKTAGVTE 243
Query: 237 KLLTK-HAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQ 295
K++ + H RNA+LP +T L LQ G + +GA+ TE+VF YPG+G +L A + DY L+
Sbjct: 244 KMIVRNHVIRNAMLPMITQLGLQFGGIFSGALITEMVFAYPGIGWILYDAIMKADYNLIM 303
Query: 296 GGFLMVIIAVLVANFIIDIVYALIDPRVR 324
G + IA+ + ++D++Y L DPRVR
Sbjct: 304 GVMCISTIAITTSILLLDLIYPLFDPRVR 332
>pir||D75202 dipeptide abc transporter, dipeptide-binding protein PAB0092 -
Pyrococcus abyssi (strain Orsay)
>gi|5457576|emb|CAB49067.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 310
Score = 185 bits (465), Expect = 6e-46
Identities = 108/325 (33%), Positives = 175/325 (53%), Gaps = 24/325 (7%)
Query: 4 KQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLY 63
K+++ +KI+ + ++ + L+PGDP + ++ E L KF L
Sbjct: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFA-----TEEQLAKFRHQL- 56
Query: 64 GLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
GL++PLY+Q+I++ +LRGD G S++ VS +I L Y + + A +++W+ G
Sbjct: 57 GLDRPLYIQYIDWMSKVLRGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLV 116
Query: 124 LGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
G LA K+ +D +M + F S+PYFW ++L+ GVKL I P G
Sbjct: 117 FGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDW----- 171
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLT- 240
+H ILP L+L + + A R ++ LE DY+ A G E+++
Sbjct: 172 ----------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVY 221
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
KHA RNA++P VT + LQ+ + GA+ TE VF +PG+G LL+ A +DY ++Q L+
Sbjct: 222 KHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLI 281
Query: 301 VIIAVLVANFIIDIVYALIDPRVRV 325
+ + ++ANF+ DI Y +IDPRVR+
Sbjct: 282 IGVLTVIANFLADITYTIIDPRVRI 306
>gb|AAK42786.1| ABC transporter, permease protein [Sulfolobus solfataricus]
Length = 333
Score = 185 bits (464), Expect = 8e-46
Identities = 106/331 (32%), Positives = 177/331 (53%), Gaps = 8/331 (2%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDP----IQIMINSALGLSPQERETLLKFYE 60
++L R++ + + ++W L P P +Q + P+ +L+ +
Sbjct: 4 KWLIRRLASVIIAIFVTIVISWALLEFSPYSPANYIMQFINPQDFAQKPELYASLIDYLN 63
Query: 61 DLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWII 120
L PL + +N+ + L G+LG+SI+ V+ +I ALP+ + I+ +I++S+ +
Sbjct: 64 TLRPHGNPL-INAVNYIWNTLHGNLGFSIISNVPVAELIAVALPWTLFIVVTSILISFFL 122
Query: 121 GNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNL 178
G LG G + K D L S+P + +A++L+Y L +IFP GAYS ++
Sbjct: 123 GIRLGQKLGYLRGTKTDSVATVSLSILRSVPIYIYAVLLIYILAFIYHIFPTGGAYSIHV 182
Query: 179 VPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKL 238
P F++ FI L H LP L+L IV + W + MR IY L D+V + E G + +
Sbjct: 183 TPGFNLPFIASVLYHAFLPILTLTIVNLVGWILQMRANTIYVLGEDFVNFAEISGVKKDI 242
Query: 239 LTK-HAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGG 297
+ K + +NAILP T L + +G +G++ E F+YPGVG LL+++ S DY G
Sbjct: 243 IEKKYIGKNAILPLYTSLIISIGFSFSGSVFVEQTFSYPGVGNLLINSITSNDYPTEMGV 302
Query: 298 FLMVIIAVLVANFIIDIVYALIDPRVRVSYE 328
F+++I+AV+V N I D+ Y+ +DPR +V E
Sbjct: 303 FIIIIVAVIVGNLIADLTYSFLDPRAKVGEE 333
>pir||E70343 transporter (OppBC family) - Aquifex aeolicus
>gi|2983140|gb|AAC06743.1| (AE000692) transporter (OppBC
family) [Aquifex aeolicus]
Length = 327
Score = 177 bits (445), Expect = 1e-43
Identities = 105/310 (33%), Positives = 171/310 (54%), Gaps = 8/310 (2%)
Query: 17 TFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKPLYVQFINF 76
T L L++L+ +L PGD + L L+PQ ++ + LYGL+KPL VQ+ +
Sbjct: 15 TLLGVTFLSFLIIKLAPGDYLD-----QLRLNPQISPETIERLKHLYGLDKPLLVQYFLW 69
Query: 77 WKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAG--KNKKY 134
K+ L DLGYS Y V+ +I +P + + + + +W++ LG LA +N +
Sbjct: 70 LKNALFFDLGYSFQYHAPVAELILERIPNTLLLSVSSALFAWLLSIPLGTLAAFKENSLF 129
Query: 135 DKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSITFIVDFLKHW 194
D++++ Y S+P F+ A +L++F K I P G S N ++D LKH
Sbjct: 130 DRFVVGFSYTFMSVPSFFLAFLLLFFAS-KTGILPVGGMQSPNFEQLSIPEKVLDILKHL 188
Query: 195 ILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLTKHAYRNAILPQVTG 254
I+P L+L +V + S +R+ ++ L + V L+A G L +H +NA+ P T
Sbjct: 189 IIPSLTLGLVSLASLTRLVRSSVLEILSSPMVTMLKAKGVGTFTLVRHVLKNAMNPFTTL 248
Query: 255 LALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDI 314
L ++ +++GA EI+ +PG+G+L+++A LSQD FL+ GG + I +LV N I D+
Sbjct: 249 LGYEIASLISGAALIEIIVGWPGMGMLMLNAVLSQDLFLVMGGLYIGTIMLLVGNLIADL 308
Query: 315 VYALIDPRVR 324
+ A IDPRVR
Sbjct: 309 LLAYIDPRVR 318
>emb|CAA64609.1| (X95287) archaeal ABC-transporter system [Methanosarcina mazei]
Length = 315
Score = 172 bits (431), Expect = 6e-42
Identities = 102/314 (32%), Positives = 166/314 (52%), Gaps = 15/314 (4%)
Query: 14 YFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKPLYVQF 73
Y + + +N+ LPRLMPGDP++ +I + +S Q E L GL++PLY QF
Sbjct: 11 YLASLALIIIINFTLPRLMPGDPVKNLIGEDVYVSEQVMEEL----RAELGLDRPLYEQF 66
Query: 74 INFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAG--KN 131
+F +L DLGYS V+ I+ + + + + ++++ G+ LGALAG
Sbjct: 67 ASFVSDILHLDLGYSYHLHAPVAEILLDRIGWTLLFVGSSVIIGAFAGSLLGALAGWKPE 126
Query: 132 KKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSITFIVDFL 191
K+ + F + P ++ A++ +Y +L +FP +G Y + S L
Sbjct: 127 KRTSRVTGLAFIVFSCTPPYFLALLSLYIFSFRLGLFPSKGFYDAPEIGSI--------L 178
Query: 192 KHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEK-LLTKHAYRNAILP 250
H LP + + + MR +I E + Y Y A G ++ +L +H +N+ LP
Sbjct: 179 HHLFLPICVMSVFSASRNFLVMRGSVIQEKKELYALYARAKGLNDTGVLFRHVLKNSSLP 238
Query: 251 QVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANF 310
+T LAL G + +GA+ EI+F+ G+G L+ A + +DY LLQG FL++ + L+AN
Sbjct: 239 IITLLALDFGFLFSGALFIEIIFSLNGMGTLIYGAIMGKDYPLLQGAFLVISLTALLANM 298
Query: 311 IIDIVYALIDPRVR 324
+ D++YALIDPRVR
Sbjct: 299 LADLLYALIDPRVR 312
>gi|11499357 dipeptide ABC transporter, permease protein (dppB) [Archaeoglobus
fulgidus] >gi|7449122|pir||G69470 dipeptide ABC
transporter, permease protein (dppB) homolog -
Archaeoglobus fulgidus >gi|2648780|gb|AAB89482.1|
(AE000980) dipeptide ABC transporter, permease protein
(dppB) [Archaeoglobus fulgidus]
Length = 354
Score = 162 bits (406), Expect = 5e-39
Identities = 99/338 (29%), Positives = 177/338 (52%), Gaps = 28/338 (8%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
Y+ + ++ T L +T+ +L+ R++PGDPI M+ + P+E +L+ GL
Sbjct: 25 YIITRFLMVIPTVLILLTIVFLILRIIPGDPITAMVGQKV---PEE---VLEKLRHEAGL 78
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILY--RDSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
+KP + Q+I + K + GDLG S+++ R ++ I+ H P + + +LS +IG
Sbjct: 79 DKPYHEQYIEYLKGVFTGDLGKSMIWGKRPVIAEIMDH-FPATLELTIFGFILSVLIGVA 137
Query: 124 LGALAG--KNKKYDKYLMPVFYFLASIPYF--WFAMVLVYFLGVKLNIFPYQGAYSQNLV 179
G++A + K D + Y + + F WF M+L GV L + P G +
Sbjct: 138 TGSIAAFRRGSKVDSGMR--IYSIVAYTLFIPWFGMLLQMLFGVYLKVLPIGGRITPGNT 195
Query: 180 P-------------SFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYV 226
P + + ++D L H LP ++L IV+ G++ +RN +I L D++
Sbjct: 196 PETITGLYVLDSILTLNFNSLIDALAHLALPAITLGIVLSGAYTRLLRNNLIDVLSQDFI 255
Query: 227 RYLEALGASEKLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAA 286
+ A G + + HA +NA +P VT + LQ +++AGA+ TE F++PG+G L+
Sbjct: 256 KAYRARGVRNRKVVFHAMKNAFIPVVTLMGLQFAILLAGAVLTESTFSWPGMGTFLIERI 315
Query: 287 LSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
+DY +QG + + V + + ++D++YAL+DPR+R
Sbjct: 316 EYRDYTSVQGAIVFYAVFVALISLVVDVIYALLDPRIR 353
>gb|AAK43157.1| Maltose ABC transporter, permease [Sulfolobus solfataricus]
Length = 322
Score = 161 bits (404), Expect = 9e-39
Identities = 99/331 (29%), Positives = 176/331 (52%), Gaps = 29/331 (8%)
Query: 17 TFLFAVTLNWLLPRLMPGDPIQIMIN--------------SALGLSPQERETLLKFYEDL 62
TF +T+N++LPRLMPG + ++I+ SA+ L + E
Sbjct: 3 TFFVVITVNFILPRLMPGSALAVVISLIEGQNGVAATAGSSAIALEVSQLEAA------- 55
Query: 63 YGLNK-PLYVQFINFWKSLLRGDLGYSILYRDS-VSNIIKHALPYDIAILFPAIVLSWII 120
+GL P YVQ+ ++ + + +LG SI Y + V +II LP+ + ++ ++++ +
Sbjct: 56 FGLTPAPWYVQYAHYIQGIFTLNLGASITYYPTPVLSIILSGLPWTLFLVVVGAIIAFFL 115
Query: 121 GNWLGALAGKNKKY--DKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNL 178
G++LG++AG N++ D ++ + LA++P F M L +L V+ IF N
Sbjct: 116 GSYLGSIAGFNRRSRKDLVILIITSILAALPSFVILMYLEMWLSVQHGIFLISFPSKINT 175
Query: 179 VPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKL 238
P+ I+ + + LP ++L + + +GMRN +++ + +YV Y E LG
Sbjct: 176 SPNS----IMALSRFYTLPIIALMFTSLSGFVLGMRNNMLHTIRDNYVTYAEILGLDHNR 231
Query: 239 LTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGF 298
+ K Y+N++LP +T A+ LGL ++ ++ E + PGVG A S+D LLQG F
Sbjct: 232 IRKMVYKNSLLPNITAFAIILGLAISQSLTVEGLLTTPGVGFFFGLALTSKDLPLLQGIF 291
Query: 299 LMVIIAVLVANFIIDIVYALIDPRVRVSYEE 329
L + I ++++ I++ +Y ++DPR RVS E
Sbjct: 292 LFIAIMLILSIAIVEAIYTILDPRARVSESE 322
>pir||C83082 probable permease of ABC transporter PA4503 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9950743|gb|AAG07891.1|AE004864_3 (AE004864) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 336
Score = 161 bits (402), Expect = 2e-38
Identities = 100/335 (29%), Positives = 177/335 (51%), Gaps = 21/335 (6%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
++ R++ + TF L + L RL+PGDP+++M+ E L + GL
Sbjct: 4 FIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGERRVDPQMHAEALHRL-----GL 58
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLG 125
+KPLY Q++++ +L +G+LG SI + V N + + F A++ + +G G
Sbjct: 59 DKPLYQQYLDYVGNLAQGNLGKSIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAG 118
Query: 126 ALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYF-------------LGVKLNIFPY 170
+A + +D +M + S+P FW+ ++L+ +GV + P
Sbjct: 119 VVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVSLGWTPVSDRIGVLYEVEPK 178
Query: 171 QGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLE 230
G + + S +D ++H ILP + L + + A R+ ++ L DYVR
Sbjct: 179 TGFMLIDTLLSDEEGAFLDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTAR 238
Query: 231 ALGASE-KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQ 289
A G S +++ HA RNA++P +T L LQ+G ++AGA+ TE +F++PG+G L+ A ++
Sbjct: 239 AKGLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISAR 298
Query: 290 DYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
DY ++Q G L+V V++ NF++DI+Y L +PR+R
Sbjct: 299 DYPVVQNGILLVATLVILVNFVVDILYGLANPRIR 333
>gb|AAK42738.1| Dipeptide ABC transporter permease protein (dppB-3) [Sulfolobus
solfataricus]
Length = 343
Score = 154 bits (386), Expect = 1e-36
Identities = 99/337 (29%), Positives = 172/337 (50%), Gaps = 20/337 (5%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
++ R+I+ F+T + + L +++ ++ +P+ + + L P T L+ YGL
Sbjct: 8 FIIRRIINAFITLILLIILVFIMIHIIAPNPLAL---ARLYTGPHATYTELEQVAKQYGL 64
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLG 125
++PLY+Q IN+ ++L G+ G Y+ V +I LP + ++ PA +LS +IG + G
Sbjct: 65 DQPLYIQIINYIINVLHGNFGIDPTYKVPVITLIGKYLPRTLELVIPATILSVVIGLFTG 124
Query: 126 ALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFS 183
A+A +NK D + V+ + P F A++L + L + P G + L P S
Sbjct: 125 AIAASNRNKPLDYLVRGVYLVTWASPPFLIAVILQLVIAYYLRLLPPTGTVNPVLTPPKS 184
Query: 184 IT--------------FIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYL 229
IT + + H +LP +++ +V G R ++ +E+D+ +
Sbjct: 185 ITPFPLLNAMLAGDWPYFSSLVHHMVLPVIAIALVSFGIVTRIARASMLDYMESDFAKLS 244
Query: 230 EALGASEKLLTKHAY-RNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALS 288
G S + + RNA +P VT +AL G VAGA+ E +F Y G+G + A S
Sbjct: 245 LMKGLSRRRVVYGVVLRNASIPLVTLIALLFGYSVAGAVVIEDIFQYHGMGYFITQAIES 304
Query: 289 QDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVRV 325
DY + G ++V IA+++AN I DI+Y ++DPRVR+
Sbjct: 305 LDYTSILGTTIIVGIAIIIANLIADILYGVLDPRVRI 341
>sp|P37316|DPPB_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|1073367|pir||S47765 dipeptide transport system
permease protein dppb - Escherichia coli
>gi|349226|gb|AAA23703.1| (L08399) transmembrane protein
[Escherichia coli] >gi|466682|gb|AAB18521.1| (U00039)
dppB [Escherichia coli] >gi|1789965|gb|AAC76568.1|
(AE000431) dipeptide transport system permease protein 1
[Escherichia coli K12]
Length = 339
Score = 153 bits (384), Expect = 2e-36
Identities = 97/339 (28%), Positives = 176/339 (51%), Gaps = 24/339 (7%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
Q++ R++ + TF+ L + ++PGDP+ IM G+SP+ LL G
Sbjct: 3 QFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGER-GISPERHAQLLAEL----G 57
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWL 124
L+KP++ Q++++ ++ GDLG S+ R V + + A++ + +G +
Sbjct: 58 LDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPV 117
Query: 125 GALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQ------ 176
G LA + +D + + S+P FW+ M+L+ + V N+ P G S
Sbjct: 118 GVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDD 177
Query: 177 -NLVPSFSITF---------IVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYV 226
N + F + +D + H ILP + L + + R+ ++ L DY+
Sbjct: 178 SNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYI 237
Query: 227 RYLEALGASE-KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHA 285
R A G + +++ HA RNA+LP VT + LQ+G ++AGAI TE +F++PG+G L+ A
Sbjct: 238 RTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDA 297
Query: 286 ALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
+DY ++QGG L+V +++ N ++D++Y +++PR+R
Sbjct: 298 LQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336
>emb|CAC11413.1| (AL445063) ABC-transporter (orf B) related protein [Thermoplasma
acidophilum]
Length = 331
Score = 153 bits (383), Expect = 3e-36
Identities = 94/322 (29%), Positives = 171/322 (52%), Gaps = 5/322 (1%)
Query: 7 LKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLN 66
+ RKI+ + +F V + +++ R+MPG P+ + ++ + QE+ T+ K LYG
Sbjct: 12 ITRKIIQDVVLIIFVVVILYVVFRIMPGSPVDLFLHGLKHPTEQEKITIEKQL-GLYG-G 69
Query: 67 KPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGA 126
K F+ + + + + G SV +IK ALPY + + A V+S+ IG LG
Sbjct: 70 KFSLTNFLIYLRDMFTFNFGEDYYTGQSVIFVIKQALPYTLLLFGSAAVISFAIGIPLGI 129
Query: 127 LAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSI 184
+ KK + ++ L SIP+F FA++ +L L+IFP + + + + ++
Sbjct: 130 YTSFKRGKKSESGIITASTLLNSIPFFVFAIIFFVYLAGDLHIFPLRSIFPISYIVHPTL 189
Query: 185 TFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEK-LLTKHA 243
I L + +P + L IV + MR ++ L D++ A G SE+ ++ HA
Sbjct: 190 KSIELILYYLAMPIIVLVIVEAAGHLLTMRAAMVSVLGEDFITTARAKGVSERGIMFHHA 249
Query: 244 YRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVII 303
RNA++P T +AL+ +++GA+ E++F+ G+G +L A L +DY + +G ++ I
Sbjct: 250 ARNAMIPVSTRMALEFAFLMSGAVIVEVIFSIHGMGTVLYDATLQEDYPVSEGALFVISI 309
Query: 304 AVLVANFIIDIVYALIDPRVRV 325
V++A ID ++A +DPR++V
Sbjct: 310 IVILAYSAIDFIHAWLDPRIKV 331
>pir||F75454 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458683|gb|AAF10534.1|AE001948_3
(AE001948) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 345
Score = 153 bits (382), Expect = 3e-36
Identities = 101/344 (29%), Positives = 169/344 (48%), Gaps = 29/344 (8%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINS-----ALGLSPQERETLLKFYE 60
YL R+++ L L L + RL+PG P ++ ++ +R ++
Sbjct: 4 YLIRRLLRTLLVMLGISLLVFTFVRLIPGGPCTAILGERGTPESIAACNHDRGFDRPWFF 63
Query: 61 DLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWII 120
+ G L Q+ + LLRGDL SI+ + V +K P + + F A++ + ++
Sbjct: 64 NAGGEGGALNAQYPEYMAGLLRGDLDKSIITQIPVKEDLKTRFPATVELAFAALIFALLV 123
Query: 121 GNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNL 178
G G +A +N +D + S+P FW ++L YF GVKL P S L
Sbjct: 124 GLPAGIIAALRRNSLWDNLATTISLIGVSMPVFWLGLLLSYFFGVKLGWLPP----SARL 179
Query: 179 VPSFSITFIV-----------------DFLKHWILPFLSLFIVMIGSWAIGMRNMIIYEL 221
F + I D KH +LP ++L + + A R+ ++ L
Sbjct: 180 GTEFDLQSITGMNVLDGLLRGQPAAAWDAAKHLVLPAIALGTIPLAIIARITRSSLLDVL 239
Query: 222 EADYVRYLEALGASEKLLT-KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGV 280
DYVR A G S + +T KHA RNA+LP VT + LQ+G ++ GA+ TE +F++ GVG
Sbjct: 240 GQDYVRTARAKGLSARNITLKHALRNALLPIVTVIGLQIGGLLGGAVLTETIFSWNGVGS 299
Query: 281 LLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
L A ++D+F++QGG + + + + + N ++D+ YA +DPR++
Sbjct: 300 WLYDAISARDFFVIQGGVIFIALVISLVNLLVDLSYAALDPRIQ 343
>gi|10955090 moaB [Agrobacterium tumefaciens] >gi|11277277|pir||T45537 moaB
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665713|gb|AAB88473.1| (AF242881) moaB
[Agrobacterium tumefaciens]
Length = 313
Score = 152 bits (380), Expect = 6e-36
Identities = 97/322 (30%), Positives = 172/322 (53%), Gaps = 17/322 (5%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
YL +++ +T L +TL +L+ R++PGDP+ +++ SP+ L GL
Sbjct: 4 YLAKRLCFAVVTLLSVLTLIFLMVRVLPGDPVLMILGDQA--SPESVAAL----RQRLGL 57
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLG 125
++P+ +Q++ F S ++GDLG S++ V+ + LPY + + F ++V+ I+G G
Sbjct: 58 DQPIGLQYVQFLGSAVKGDLGNSMVTGRPVTEEVMSVLPYTLELTFASLVVGLILGVPTG 117
Query: 126 ALAG-KNKKYDKYLMPVFYFLA-SIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFS 183
A K K Y++ + + S+P F A+VL+ + L FP A + +
Sbjct: 118 VWAAVKRSKLPDYILRLISLIGLSLPGFVSAIVLLIVFAINLRWFPVISAGTGD------ 171
Query: 184 ITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLT-KH 242
IV+ + LP +SL ++M+ R+ ++ L D+VR A GA ++ +H
Sbjct: 172 --GIVNRVWQMTLPVISLALIMMAYITRVTRSAMLEVLNQDFVRTARAKGARPSVVIWRH 229
Query: 243 AYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVI 302
A N ++P T + L LG+++ ++ TEIVF+ PG+G L++ A +DY LLQG ++
Sbjct: 230 ALGNCLIPISTVVGLYLGILIGNSVLTEIVFSRPGLGKLILTALSQRDYTLLQGMVVVYT 289
Query: 303 IAVLVANFIIDIVYALIDPRVR 324
+ V++ N D+ Y L DPRV+
Sbjct: 290 LIVVIVNLATDLTYGLFDPRVQ 311
>pir||A72289 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981697|gb|AAD36225.1|AE001772_4 (AE001772)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 335
Score = 151 bits (378), Expect = 1e-35
Identities = 99/340 (29%), Positives = 176/340 (51%), Gaps = 22/340 (6%)
Query: 1 MGFKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYE 60
M K Y+ +I++ + L +L+ R++PGDP+ ++ G +P+E +++
Sbjct: 1 MSLKNYVITRILLAAPMIFILLALIFLVLRIIPGDPVLAILG---GKAPKE---VIEQKR 54
Query: 61 DLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWII 120
GL+KP+ VQF ++ LL+GDLG S L V IK P + + A +++ +I
Sbjct: 55 HELGLDKPIIVQFFDYIGDLLKGDLGKSTLTGRPVWEEIKERFPATLELTLFAFIVAVLI 114
Query: 121 GNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNL 178
G + G+ A ++ D + ++P FWF +++ Y GV L P G S +
Sbjct: 115 GIFWGSFAAYKRDSGVDIGARMFSMVMYAVPVFWFGLMMQYIFGVILRWLPVGGRLSPTM 174
Query: 179 -------VPSFSITF------IVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADY 225
+ S F + D +H +LP L+L +V+ + +RN + L D+
Sbjct: 175 NLKVITGIYSIDALFTGNWEALKDVFEHLLLPGLTLGLVISSVFVRMVRNNTVLTLAQDF 234
Query: 226 VRYLEALGASEKL-LTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMH 284
V+ A G E++ L ++A +NA++P T + LQ L++ GA+ TE F++PG+G L+
Sbjct: 235 VKAARARGLKERVVLFRYALKNALVPIFTMMGLQFALLLGGAVLTETTFSWPGLGSYLVM 294
Query: 285 AALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
+D+ +QG + + V+V + ++D++ ALIDPRVR
Sbjct: 295 KIRYRDFPAIQGTVVFFALIVVVISILVDVINALIDPRVR 334
>dbj|BAB07362.1| (AP001519) dipeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 333
Score = 151 bits (378), Expect = 1e-35
Identities = 95/335 (28%), Positives = 179/335 (53%), Gaps = 22/335 (6%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
Y+ ++++ + + + + L+PG+P Q ++ SPQ L E+ GL
Sbjct: 4 YVLHRVMLLIPVLIGMTIITFSIVHLIPGNPAQTILGEQA--SPQAVAEL----EERLGL 57
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLG 125
N+P VQ+ + + LL GD G S+ R +S I L + + F A++ + ++G G
Sbjct: 58 NEPYLVQYGYYVRDLLTGDFGTSLRTRAPISEEIVPYLGATLELTFFAMLFAVVVGVNAG 117
Query: 126 ALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYS-QNLVPSF 182
++ ++ +D M V S+P FW A++ + +L FP G + ++ + S
Sbjct: 118 IISAWKQHSFFDYACMLVALLGVSMPIFWLALMQQWIFAQELGWFPAFGRDNPRDPIQSI 177
Query: 183 SITFIVDFLKHW------------ILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLE 230
+ +++D + HW +LP ++L + + A R+ ++ L +DY+R +
Sbjct: 178 TGLYVLDAILHWRWDHVHVALKHLVLPAIALGTIPMAIIARMTRSSMLEVLRSDYIRTVH 237
Query: 231 ALGASE-KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQ 289
A G+S+ ++ KHA +NA++P +T LQ G+++ GAI TE +F++PG+G + A +
Sbjct: 238 AKGSSQFVVIYKHALKNAMIPVLTVAGLQTGVLLGGAILTETIFSWPGIGRYIYEAITYR 297
Query: 290 DYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
DY ++Q G L+V I +V N I+D++Y+ IDPR++
Sbjct: 298 DYPVIQSGILVVAIMFVVINLIVDLLYSYIDPRIK 332
>pir||B72367 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981045|gb|AAD35617.1|AE001728_18 (AE001728)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 321
Score = 150 bits (376), Expect = 2e-35
Identities = 93/323 (28%), Positives = 163/323 (49%), Gaps = 9/323 (2%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
+Y+ R+++I + + +++ PGD + + L P + L+ E G
Sbjct: 3 KYIARRLIIMIPELIIISFIVFIIMEAAPGDFLDMY-----RLDPSVSQQFLEKMEKELG 57
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWL 124
L+KP VQ+ + K++L+GD GYS YR VS +I + + + ++ W++G +
Sbjct: 58 LDKPWIVQYGIWLKNVLKGDFGYSFYYRRPVSTLIWERVFATVILSVSSLAFEWLLGIIV 117
Query: 125 GALAGKNKK--YDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSF 182
G + K +DK L V + ++P F+ A++L+Y + K FP G S N
Sbjct: 118 GVFSALKKYSIWDKILTVVAFSGIALPGFFLAILLLY-MAAKTGWFPIAGMVSVNHNQMT 176
Query: 183 SITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLT-K 241
+ D H +LP ++L S MR ++ L DYV + A G E+++ K
Sbjct: 177 TWEKFKDIASHLVLPTIALGFGGFASLMRYMRGSLLDVLNEDYVEFARAKGMPERVVIYK 236
Query: 242 HAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMV 301
HA RNAI P +T L + ++ GA+ E +F +PG+G L+ A L QD +++ ++
Sbjct: 237 HALRNAINPMITFLGFSISNVLGGAVIIENIFAWPGMGRLIYQALLQQDIYIVMASAVIS 296
Query: 302 IIAVLVANFIIDIVYALIDPRVR 324
I +++ N + D++ A +DPRVR
Sbjct: 297 AIMLVIGNLVADVLLAAVDPRVR 319
>dbj|BAB04287.1| (AP001509) nickel transport system (permease) [Bacillus halodurans]
Length = 314
Score = 149 bits (373), Expect = 4e-35
Identities = 92/321 (28%), Positives = 164/321 (50%), Gaps = 21/321 (6%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
Y+ ++I LFA+ + ++ RL P DP + + +A + P E K +E +GL
Sbjct: 4 YIAKRIFAVIPIVLFAIFIMFVFIRLSPVDPAEAYLTAA-NIHPTEELLAEKRHE--FGL 60
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLG 125
++P+ VQ++ + + D G+S + V + + +P + + +I L+ +I LG
Sbjct: 61 DQPMAVQYVQTIVKVFQLDFGHSYVTNQPVWDEVTARMPATLQLAVSSIFLAVLISIPLG 120
Query: 126 ALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFS 183
L+ KN D++ + Y ASIP FW +L++F VKLN+FP +G S
Sbjct: 121 FLSAIYKNSLIDRFSRLLSYLGASIPQFWLGYLLIFFFSVKLNLFPVEGRGSW------- 173
Query: 184 ITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEK-LLTKH 242
H +LP ++L + +I + +R ++ +++ YV Y G EK ++ KH
Sbjct: 174 --------AHLVLPTVTLSLALIAIYTRLLRASVLEQMQESYVLYARTRGIKEKVIMVKH 225
Query: 243 AYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVI 302
+ AI P +TGL + +G ++ G I E VF++PG G + A ++D ++Q L+
Sbjct: 226 VLKLAISPVITGLGMNVGKLLTGTIIVEQVFSWPGFGRYFVDAIFNRDIPVIQCYVLLAA 285
Query: 303 IAVLVANFIIDIVYALIDPRV 323
+V N I+D+V +DPR+
Sbjct: 286 CLFIVCNLIVDLVQLAMDPRI 306
>gb|AAC67218.1| (U78968) transmembrane transport protein DppB [Streptococcus
pyogenes]
Length = 325
Score = 148 bits (370), Expect = 9e-35
Identities = 98/317 (30%), Positives = 168/317 (52%), Gaps = 10/317 (3%)
Query: 12 VIYFLTFLFAVT-LNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKPLY 70
+I +T +F V+ L ++L + P DP+ +N L+P + + + Y GL+KP
Sbjct: 12 IIRCVTLIFGVSVLTFVLLKQSPVDPVMASVNYDTSLTPAQYKAIAHHY----GLDKPAL 67
Query: 71 VQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAG- 129
VQ+ + K++++GDLG S++YR VS+II+ ++ + +LS +IG LG L+
Sbjct: 68 VQYFIWLKNVIQGDLGTSLVYRQPVSDIIRSRAGASFILMGLSWILSGLIGFILGTLSAF 127
Query: 130 -KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSITFIV 188
+ K D+ + Y S+P FW ++ + V+L FP G S S IT +
Sbjct: 128 HQGKLLDRVVRWFSYLQISVPTFWIGLIFLLIFSVQLGWFPI-GISSPIGTLSQDIT-LA 185
Query: 189 DFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLTKHAYRNA 247
D +KH +LP +L I+ I + + R ++ L ++YV + A G ++ ++ H RNA
Sbjct: 186 DRVKHLMLPVFTLSILGIANVTLHTRTKMMSVLSSEYVLFARARGETQWQIFKHHCLRNA 245
Query: 248 ILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLV 307
I+P +T G + G++ E VF+YPG+G L A L D LL ++ + V
Sbjct: 246 IVPAITLHFSYFGELFGGSVLAEQVFSYPGLGSTLTEAGLKSDTPLLLAIVMIGTLFVFA 305
Query: 308 ANFIIDIVYALIDPRVR 324
N I DI+ ++I+P++R
Sbjct: 306 GNLIADILNSIINPQLR 322
>dbj|BAB07357.1| (AP001519) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 322
Score = 147 bits (368), Expect = 1e-34
Identities = 88/326 (26%), Positives = 178/326 (53%), Gaps = 9/326 (2%)
Query: 3 FKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDL 62
+K ++R ++ FL +V + +++ + MPGDP+ S +P + ++ +
Sbjct: 2 WKLIIRRCFIMIPQLFLLSVIV-FMIAQAMPGDPLTGFYQS----NPNISQEVIDAQRER 56
Query: 63 YGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGN 122
YGLN P YVQ++ + + L+GD G S R V+ +I + + I + ++++++I
Sbjct: 57 YGLNDPWYVQYVRWVGNALQGDFGDSYQQRIPVTEVIDNRIWNTIWLSLLTLIMTYMIAI 116
Query: 123 WLGALAGK--NKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVP 180
LG L+G+ + D+ + Y + P F ++++++ G +L FP G+ S + P
Sbjct: 117 PLGLLSGRYNDTLLDRAITGYTYVGFAAPVFITSLLMLFLFGFQLGWFPTGGSVSPHAQP 176
Query: 181 SFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEK-LL 239
+ +++ + H +LP SL I+ S +R+ +I + ++DYVR A GASE+ +
Sbjct: 177 G-TFGYVLSKINHMLLPAFSLAIITTVSTVQYLRSELIDQKQSDYVRTARARGASERRIY 235
Query: 240 TKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFL 299
KH RN++LP +L ++ G I E++F+YPG+G L + + + +DY ++ L
Sbjct: 236 LKHLPRNSLLPIAAFFGYELTGLIGGTIFVEMIFSYPGMGQLFLSSIMQRDYSVVTTMVL 295
Query: 300 MVIIAVLVANFIIDIVYALIDPRVRV 325
+ +A ++ + DI+ +++DPR+++
Sbjct: 296 LFGVASILGALLSDIILSIVDPRIKI 321
>sp|P42062|APPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPB
>gi|2126889|pir||I40546 oligopeptide ABC transporter
(permease) appB - Bacillus subtilis
>gi|677946|gb|AAA62359.1| (U20909) AppB [Bacillus
subtilis] >gi|2633493|emb|CAB12996.1| (Z99110)
oligopeptide ABC transporter (permease) [Bacillus
subtilis]
Length = 317
Score = 146 bits (366), Expect = 3e-34
Identities = 93/323 (28%), Positives = 169/323 (51%), Gaps = 16/323 (4%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
Y+ R+ ++ L L++++ + PGDP+ +M++ + + +E+ + + YGL
Sbjct: 4 YIIRRTLMSIPILLGITILSFVIMKAAPGDPMTLMMDPKISQADREQ------FIEKYGL 57
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILYRDS-VSNIIKHALPYDIAILFPAIVLSWIIGNWL 124
N P YVQ++ + ++++GD G SI+ + + VS +I LP + ++ + +L+ +I
Sbjct: 58 NDPQYVQYLKWLGNMVQGDFGTSIVRKGTPVSELIMARLPNTLLLMLVSTILALMISIPF 117
Query: 125 GALAGKN--KKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSF 182
G L+ K K D + + +IP FWF ++L+ L V L FP G + N F
Sbjct: 118 GVLSAKRPYSKIDYGITFTSFIGLAIPNFWFGLILIMVLSVNLGWFPTGGVETLNT--EF 175
Query: 183 SITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLTK 241
+I D + H ILP L + R+ ++ L DY+R A G E ++L K
Sbjct: 176 NI---FDRIHHLILPAFVLATADMAGLTRYTRSNMLDVLNQDYIRTARAKGFKENRVLFK 232
Query: 242 HAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYF-LLQGGFLM 300
H RNA+LP +T L + + G++ E +F +PG+G L + +A + ++ ++
Sbjct: 233 HGLRNALLPVITIFGLMIPSFIGGSVVVEQIFTWPGLGKLFVDSAFQRTIIRIIMAMTVI 292
Query: 301 VIIAVLVANFIIDIVYALIDPRV 323
+ V+V N I DI+YA++DPR+
Sbjct: 293 SAVLVVVGNLIADILYAIVDPRI 315
>gb|AAG22035.1|AF305387_2 (AF305387) OppB [Bacillus thuringiensis]
Length = 309
Score = 146 bits (365), Expect = 3e-34
Identities = 100/326 (30%), Positives = 173/326 (52%), Gaps = 27/326 (8%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
+Y+ ++ V LT TL + L +L+PG P++ + LSP ++E +L + YG
Sbjct: 3 RYVLKRFVYMALTLFLITTLTFFLMKLLPGSPLK----NQEKLSPAQKEIIL----EKYG 54
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRDS-VSNIIKHALPYDIAILFPAIVLSWIIGNW 123
LN P+ VQ+ + +L +GDLG S Y + V+++I + + AI+L IG
Sbjct: 55 LNDPVPVQYARYLGNLAKGDLGVSFQYDNRPVTDMIVDRIGPSAQLGLQAIILGTFIGLI 114
Query: 124 LGALAG-KNKKYDKYLMPVFYFLA-SIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
LG +A +N + Y + L S+P F FA +L YF+GVKL FP A+ + P
Sbjct: 115 LGIVAALRNNTWVDYGATIISVLGMSVPSFVFAALLQYFVGVKLGWFPV--AFWKG--PE 170
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEK-LLT 240
F++ +P ++L + +I + A R +I ++ADY+ +A G S+ ++
Sbjct: 171 FTV-----------MPTIALSMAVIATIARFSRAELIEVMQADYILTAKAKGISQGVIIV 219
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
KHA RNA++P VT L + ++ G + E ++ PG+G + + DY ++ G +
Sbjct: 220 KHALRNALIPVVTILGPMVAALITGTLVIEQIYAVPGLGEQFVKSITVNDYTVIMGTTIF 279
Query: 301 VIIAVLVANFIIDIVYALIDPRVRVS 326
++ FI+DI+Y +IDPR+R++
Sbjct: 280 YSAIFILVIFIVDILYGIIDPRIRLA 305
>pir||B38447 oligopeptide permease oppB homolog - Bacillus subtilis
>gi|580897|emb|CAA39788.1| (X56347) OppB [Bacillus
subtilis]
Length = 311
Score = 145 bits (361), Expect = 1e-33
Identities = 100/326 (30%), Positives = 167/326 (50%), Gaps = 27/326 (8%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
+Y+ R++V +T VT+ + L + PG P S P E E L + YG
Sbjct: 3 KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPF-----SGEKKLPPEIEANLNAH---YG 54
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYR-DSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
L+KPL+VQ++++ KS+ D G S Y+ SV+++I P + AI+L+ +G
Sbjct: 55 LDKPLFVQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALGLGVL 114
Query: 124 LGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
G +A NK D + + F S+P F A VL Y +KL +FP G S
Sbjct: 115 FGVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGW------DS 168
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLT- 240
++ TF LP ++L + + A R+ +I L +DY+R +A G S LT
Sbjct: 169 WAYTF---------LPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSRPALTV 219
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
+HA RNA+LP VT + ++ G+ E +F PG+G +++ ++DY ++ G +
Sbjct: 220 RHAIRNALLPVVTYMGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVF 279
Query: 301 VIIAVLVANFIIDIVYALIDPRVRVS 326
+ +L+ I+D++Y +IDPR+++S
Sbjct: 280 FSVILLLCVLIVDVLYGIIDPRIKLS 305
>sp|P24138|OPPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|7442405|pir||H69668 oligopeptide transport system
permease protein oppB - Bacillus subtilis
>gi|2633498|emb|CAB13001.1| (Z99110) oligopeptide ABC
transporter (permease) [Bacillus subtilis]
Length = 311
Score = 145 bits (361), Expect = 1e-33
Identities = 99/326 (30%), Positives = 167/326 (50%), Gaps = 27/326 (8%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
+Y+ R++V +T VT+ + L + PG P S P E E L + YG
Sbjct: 3 KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPF-----SGEKKLPPEIEANLNAH---YG 54
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYR-DSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
L+KPL+VQ++++ KS+ D G S Y+ SV+++I P + AI+L+ +G
Sbjct: 55 LDKPLFVQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVL 114
Query: 124 LGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
G +A NK D + + F S+P F A VL Y +KL +FP G S
Sbjct: 115 FGVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGW------DS 168
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLT- 240
++ TF LP ++L + + A R+ +I L +DY+R +A G S +T
Sbjct: 169 WAYTF---------LPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSRPAVTV 219
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
+HA RNA+LP VT + ++ G+ E +F PG+G +++ ++DY ++ G +
Sbjct: 220 RHAIRNALLPVVTYMGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVF 279
Query: 301 VIIAVLVANFIIDIVYALIDPRVRVS 326
+ +L+ I+D++Y +IDPR+++S
Sbjct: 280 FSVILLLCVLIVDVLYGIIDPRIKLS 305
>gb|AAK41521.1| Oligo/dipeptide transport, permease protein (dppB-2) [Sulfolobus
solfataricus]
Length = 333
Score = 144 bits (360), Expect = 1e-33
Identities = 99/333 (29%), Positives = 156/333 (46%), Gaps = 14/333 (4%)
Query: 1 MGFKQYLKRKIVIYFLTFLFAVTLNWL----LPRLMPGDP-IQIMINSALGLSPQERETL 55
MGF Y ++ V + L V L W LP L +P I LG S + +
Sbjct: 6 MGFLNYAIKRAVDRIILLLGLVILLWFVVEALPELFGVNPAIWYAPVGQLGKSASYFQNI 65
Query: 56 LKFYEDLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIV 115
+ LYG N+PLYVQFI + +L +LGY + + V N + LPY I + P +
Sbjct: 66 INDITTLYGFNQPLYVQFIRYLYALFSFNLGYDFQHHEYVINEVLQYLPYTIILTLPPFI 125
Query: 116 LSWIIGNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGA 173
++ +GA A +NK D + +IP F+ VL V + P G
Sbjct: 126 FQTLLAIVVGAYAALKRNKAVDHIISNYMILQYNIPGFFILAVLWVVFAVYIKAIPISG- 184
Query: 174 YSQNLVPSFSITFIVDFLKHWILPFL-SLFIVMIGSWAIGMRNMIIYELEADYVRYLEAL 232
+ + IV LK + LP++ +FI I MRN ++ L++D+V+Y
Sbjct: 185 -----IQVLHLNDIVSILKVYWLPWIIQVFIFGFPVRGILMRNTMVDVLDSDFVKYARLS 239
Query: 233 GASEKLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYF 292
G E + A RN+I+P +T + L ++ G E +F PG+G L + AA +
Sbjct: 240 GLKESTVRAIARRNSIIPVITRTGIDLAFILGGIYFIEYIFGIPGMGYLGIIAATELNIP 299
Query: 293 LLQGGFLMVIIAVLVANFIIDIVYALIDPRVRV 325
LL G F + + LV + +D++Y L+DPR+++
Sbjct: 300 LLTGSFFFLTLYALVVLYAMDLIYPLVDPRIKL 332
>dbj|BAB05516.1| (AP001513) nickel ABC transporter (permease) [Bacillus halodurans]
Length = 315
Score = 144 bits (360), Expect = 1e-33
Identities = 93/321 (28%), Positives = 166/321 (50%), Gaps = 23/321 (7%)
Query: 9 RKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMIN-SALGLSPQERETLLKFYEDLYGLNK 67
R+++ L LF +++L RL PGDP+ ++N L +S +E ETL ED+ G NK
Sbjct: 7 RRLLEVALFVLFVTFVSFLFVRLAPGDPVLTILNVDELSVSQEEVETLR---EDM-GFNK 62
Query: 68 PLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGAL 127
PL VQ+ ++ +R D G S + V ++I LP + + ++++ I+ LG+L
Sbjct: 63 PLLVQYGHWLLDFVRLDFGVSYVTGQPVMDMIMKGLPATLELTVGSLIVMLIVSIPLGSL 122
Query: 128 AG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSIT 185
A +N+ D + A+IP FW ++ + V+LN P G
Sbjct: 123 AALYRNRWIDHLSRILAILGAAIPSFWLGLIFIDLFAVRLNWLPTMGR------------ 170
Query: 186 FIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEK-LLTKHAY 244
D ILP ++L + + + +R+ ++ L +++R A G SEK + HA
Sbjct: 171 ---DGFVSLILPSVTLGLAISSVYVRLLRSSLLDSLSQEFIRAARARGLSEKRIFVAHAL 227
Query: 245 RNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIA 304
R+++ P +T + LG ++ G + E++F YPG+G L++ A +DY L+QG L++ +
Sbjct: 228 RHSLPPVITVFGVSLGSLIGGVVVIEVLFAYPGIGKLVVDAIRQRDYPLIQGYILVMALI 287
Query: 305 VLVANFIIDIVYALIDPRVRV 325
V V N +D+ Y ++P +++
Sbjct: 288 VFVINTSVDLSYRYLNPEMKL 308
>dbj|BAA94700.1| (AB026907) dipeptide transporter DppB homolog [Ochrobactrum
anthropi]
Length = 313
Score = 144 bits (359), Expect = 2e-33
Identities = 91/301 (30%), Positives = 165/301 (54%), Gaps = 19/301 (6%)
Query: 26 WLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKPLYVQFINFWKSLLRGDL 85
+L L+PGDP++IM++ +G + + Y L G+++PL VQ+ +F + L G+L
Sbjct: 26 FLTIHLVPGDPVRIMMHGRIG-----DDEVAAIYHQL-GMDRPLLVQYFDFVRHALTGNL 79
Query: 86 GYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAG--KNKKYDKYLMPVFY 143
G SI+ + V++++ L + +L + ++S +I LG +A +N+ D + V
Sbjct: 80 GTSIVQKAPVTDLVLEKLWPTLLLLAFSTLISVLIAIPLGLVASFYRNRWPDHAIRLVSS 139
Query: 144 FLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSITFIVDFLKHWILPFLSLFI 203
++P +W ++L+ G+ L FP G +L + L H LP L++ +
Sbjct: 140 IGFAMPSYWIGLLLILLFGLWLGWFPISGIGQGHL----------EILHHLFLPALTISL 189
Query: 204 VMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLTKHAYRNAILPQVTGLALQLGLM 262
+ +R+ ++ L ++Y+ A G SE ++LTKH RNA++P +T LA+ + +
Sbjct: 190 FLGPVLIQSLRSSMLDVLTSEYIEVARAKGVSEWRILTKHVMRNALIPVITVLAINISWL 249
Query: 263 VAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPR 322
++GA+ E VF PG+G LL+ + +DY L+QG L+ + V+V N + D+ Y L+D R
Sbjct: 250 LSGAVIVEYVFGLPGLGSLLVRSVGYRDYPLIQGLSLVFGVLVVVINLLADLSYMLVDRR 309
Query: 323 V 323
V
Sbjct: 310 V 310
>sp|Q53191|Y4TP_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE PROTEIN Y4TP
>gi|2182646|gb|AAB91869.1| (AE000098) Y4tP [Rhizobium
sp. NGR234]
Length = 313
Score = 142 bits (355), Expect = 5e-33
Identities = 95/322 (29%), Positives = 156/322 (47%), Gaps = 16/322 (4%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
Y+ R++V +LL RL PGDP ++ P E ++ + GL
Sbjct: 4 YILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAG------PTATEQMVANIREELGL 57
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLG 125
N+PL VQF+++ +LRG+ G S+ V ++ L I++ ++LS +G G
Sbjct: 58 NEPLPVQFVHWASDVLRGNFGASVFTGVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFG 117
Query: 126 ALAGKNKK--YDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFS 183
LA D+ L S+P F +L+YF ++ P QG S N
Sbjct: 118 VLAAWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRWLPVQGYTSIN------ 171
Query: 184 ITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLTKH 242
+ + H ILP ++L + I A R ++ L DY+R A GAS +L H
Sbjct: 172 -QGVAPWFLHLILPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFAMLFHH 230
Query: 243 AYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVI 302
A +NA +P +T + + M+ G + TE VFN PG+G L++ A ++DY ++Q +++
Sbjct: 231 ALKNAGVPILTVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVLVLIS 290
Query: 303 IAVLVANFIIDIVYALIDPRVR 324
++ N ++D+ Y LIDPR+R
Sbjct: 291 GLYVLINLLVDLAYTLIDPRIR 312
>sp|P45054|OPPB_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|1074011|pir||E64184 oligopeptide transport system
permease protein oppB - Haemophilus influenzae (strain
Rd KW20) >gi|1574678|gb|AAC22777.1| (U32792)
oligopeptide ABC transporter, permease protein (oppB)
[Haemophilus influenzae Rd]
Length = 306
Score = 141 bits (352), Expect = 1e-32
Identities = 98/324 (30%), Positives = 163/324 (50%), Gaps = 25/324 (7%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
+++ ++++ T +T ++ L RL PG P S P+ + E Y
Sbjct: 3 KFIFKRLLEALPTLFILITFSFFLMRLAPGSPF----TSERAYPPEVMANI----EAKYH 54
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRD-SVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
LN+PLY Q+ + ++L +GD G S Y+D SV+++I A P I + A + ++G
Sbjct: 55 LNEPLYKQYFLYLENLSKGDFGPSFKYKDQSVNDLIASAFPVSIKLGMVAFAFAVVLGVT 114
Query: 124 LGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
G LA +N ++D LM +P F FA VLV + L P G +
Sbjct: 115 AGTLAALNQNSRWDYILMSFSMLGVIMPSFVFAPVLVLIFAIYLGWLPAGGWNGGTAM-- 172
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGAS-EKLLT 240
+ ILP SL I + A MR +I L ++++R +A G S +++
Sbjct: 173 -----------YMILPVASLTIAYVAGIARIMRGSMIEVLHSNFIRTAKAKGLSMSRIIL 221
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
KHA R A+LP +T L ++ G++ E VF PG+G+L ++ AL++DY L+ ++
Sbjct: 222 KHALRPALLPVITYLGPAFVGIITGSMVIESVFGLPGMGLLFVNGALNRDYSLVLSLTIL 281
Query: 301 VIIAVLVANFIIDIVYALIDPRVR 324
V ++ N I+DI+YA+IDP++R
Sbjct: 282 VGTLTILFNAIVDILYAIIDPKIR 305
>pir||G71951 dipeptide transport system permease protein - Helicobacter pylori
(strain J99) >gi|4154809|gb|AAD05865.1| (AE001465)
DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN
[Helicobacter pylori J99]
Length = 334
Score = 141 bits (352), Expect = 1e-32
Identities = 94/334 (28%), Positives = 168/334 (50%), Gaps = 23/334 (6%)
Query: 10 KIVIYFLTFLFAVTLN-WLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKP 68
K +++ + LF V++ +++ L+PGDP ++ L + + + + +GLNKP
Sbjct: 7 KRILWAIPTLFGVSIIVFMMVHLVPGDPALVI------LGEKANQAAIDALREQFGLNKP 60
Query: 69 LYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALA 128
L Q+ F ++L G+ G SI+ + V + P + + A+ ++ ++G +G LA
Sbjct: 61 LIEQYFFFINNVLHGNFGTSIMTGEPVMHEFWQRFPATVELALIALFMALVLGISVGVLA 120
Query: 129 G--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQ---------- 176
+ +D M S+P FW ++L+Y V+L P G S
Sbjct: 121 AIKRYSMFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLGWLPVFGRLSDVYYLDGPTGL 180
Query: 177 NLVPSF---SITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALG 233
L+ S VD +KH ILP + L V A R + + DYVR +A G
Sbjct: 181 YLIDSLIAGDYGAFVDTIKHLILPSIVLATVSTAVIARMTRASMAEVSKEDYVRTAKAKG 240
Query: 234 ASE-KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYF 292
S +++ H RNA++P T L L ++ G++ TE VF++PG+G +++A +D+
Sbjct: 241 CSSFRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQRDFP 300
Query: 293 LLQGGFLMVIIAVLVANFIIDIVYALIDPRVRVS 326
++Q L++ + + AN ++D++YA IDPR+R+S
Sbjct: 301 IIQSMSLIIAMMYIGANLLVDVLYAFIDPRIRLS 334
>sp|P75798|YLIC_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YLIC
>gi|7442416|pir||G64820 probable oligopeptide transport
protein b0831 - Escherichia coli
>gi|1787053|gb|AAC73918.1| (AE000185) putative transport
system permease protein [Escherichia coli K12]
>gi|4062408|dbj|BAA35526.1| (D90721) Hypothetical
protein o314 [Escherichia coli]
>gi|4062416|dbj|BAA35534.1| (D90722) Hypothetical
protein o314 [Escherichia coli]
Length = 306
Score = 140 bits (349), Expect = 2e-32
Identities = 91/322 (28%), Positives = 161/322 (49%), Gaps = 24/322 (7%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
Y+ ++++ T L +L ++PGDP +++ P+ +++ GL
Sbjct: 4 YVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAG------PEADAQVIELVRQQLGL 57
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLG 125
++PLY QF ++ + ++GD G S++ R V++ I + + ++V + I G G
Sbjct: 58 DQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAG 117
Query: 126 ALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFS 183
+A +N+ D+ M + S P F M+L+ V+L P GA
Sbjct: 118 IIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGA---------- 167
Query: 184 ITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEK-LLTKH 242
D +H+ILP L+L + A R + L DY+R A G SE ++ KH
Sbjct: 168 -----DSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKH 222
Query: 243 AYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVI 302
RNA++P VT + LQ G ++ G+I E VFN+PG+G LL+ + +DY ++Q L+
Sbjct: 223 GLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFS 282
Query: 303 IAVLVANFIIDIVYALIDPRVR 324
+ ++ N ++D++YA I+P +R
Sbjct: 283 LEFILINLVVDVLYAAINPAIR 304
>pir||C64557 dipeptide ABC transporter, permease protein - Helicobacter pylori
(strain 26695) >gi|2313397|gb|AAD07368.1| (AE000548)
dipeptide ABC transporter, permease protein (dppB)
[Helicobacter pylori 26695]
Length = 334
Score = 140 bits (349), Expect = 2e-32
Identities = 94/334 (28%), Positives = 168/334 (50%), Gaps = 23/334 (6%)
Query: 10 KIVIYFLTFLFAVTLN-WLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKP 68
K +++ + LF V++ +++ L+PGDP ++ L + + + + +GLNKP
Sbjct: 7 KRILWAIPTLFGVSIIVFMMVHLVPGDPALVI------LGEKANQAAIDALREQFGLNKP 60
Query: 69 LYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALA 128
L Q+ F ++L G+ G SI+ + V + P + + A+ ++ ++G +G LA
Sbjct: 61 LIEQYFFFINNVLHGNFGTSIMTGEPVMHEFWQRFPATVELALIALFMALVLGISVGVLA 120
Query: 129 G--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQ---------- 176
+ +D M S+P FW ++L+Y V+L P G S
Sbjct: 121 AIKRYSVFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLGWLPVFGRLSDVYYLDGPTGL 180
Query: 177 NLVPSF---SITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALG 233
L+ S +D +KH ILP + L V A R + + DYVR +A G
Sbjct: 181 YLIDSLIARDYGAFMDTIKHLILPSIVLATVSTAVIARMTRASMAEVSKEDYVRTAKAKG 240
Query: 234 ASE-KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYF 292
S +++ H RNA++P T L L ++ G++ TE VF++PG+G +++A +D+
Sbjct: 241 CSSFRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQRDFP 300
Query: 293 LLQGGFLMVIIAVLVANFIIDIVYALIDPRVRVS 326
++Q L++ + + AN ++DI+YA IDPR+R+S
Sbjct: 301 IIQSMSLIIAMMYIGANLLVDILYAFIDPRIRLS 334
>emb|CAC11408.1| (AL445063) dipeptide transport system permease protein (DPPB)
related protein [Thermoplasma acidophilum]
Length = 343
Score = 139 bits (347), Expect = 4e-32
Identities = 95/337 (28%), Positives = 161/337 (47%), Gaps = 19/337 (5%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
++ R+ + T L + + L ++ +P+ + +P ++ L E YGL
Sbjct: 8 FIIRRAIYAIFTLLILIVFIFTLIHIIAPNPLALA--RLYAGNPHASQSELIGIEKKYGL 65
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLG 125
N P+Y Q IN+ K + G+LGY L+ V +I LP + + IVLS IIG + G
Sbjct: 66 NLPIYDQVINYIKDVFIGNLGYDYLHDQPVLKLIGEYLPITLEFVLTGIVLSVIIGLFTG 125
Query: 126 ALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFS 183
A A + K D + ++ S+P F A VL ++ L + P G + L P +
Sbjct: 126 AYAAARRRKPADYTIKGLYLATWSMPTFLLAAVLQLYIAYDLKLLPATGMVNPTLKPPPN 185
Query: 184 I--------------TFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYL 229
+ + + H ILP LS+ ++ G R+ ++ ++ DY R
Sbjct: 186 VLAFPLLNAIYAHDWVYASSVIHHMILPTLSVALLSFGVITRLTRSTMLDIMDMDYFRLT 245
Query: 230 EALGASE-KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALS 288
G K + A RNA +P VT + L + GA+ E +F+Y G+G ++ A +
Sbjct: 246 IMKGIPRRKAVYGVALRNAAIPLVTYIVLAFAYAMGGAVVIEDIFSYHGMGYYIVQAVYN 305
Query: 289 QDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVRV 325
DY + G +++ IAV+VAN + D++Y ++DPRVR+
Sbjct: 306 LDYPGILGTTIIIAIAVIVANLVADVLYGILDPRVRL 342
>pir||A75027 oligopeptide transport permease protein appb PAB1194 - Pyrococcus
abyssi (strain Orsay) >gi|5459169|emb|CAB50655.1|
(AJ248288) OLIGOPEPTIDE TRANSPORT PERMEASE PROTEIN APPB
[Pyrococcus abyssi]
Length = 353
Score = 138 bits (345), Expect = 7e-32
Identities = 104/358 (29%), Positives = 163/358 (45%), Gaps = 36/358 (10%)
Query: 1 MGFKQYLKRK-----IVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQ----- 50
MG+ +YL + IV+ +TF+ ++ + ++ IQ IN + P+
Sbjct: 1 MGYGRYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSS-IQEQINMRVRTDPELQKLA 59
Query: 51 -------------ERETLLKFYEDLYGLNKPLYVQFINFWKSLLR---GDLGYSILYRDS 94
E + LLK YGL++P +V+ I+ K + GD+ I S
Sbjct: 60 KSDPHALEEWKKREYDRLLK----AYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETS 115
Query: 95 VSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAGKNKK--YDKYLMPVFYFLASIPYFW 152
V II A+P + + A ++ +G LG A + +D+ L SIP +W
Sbjct: 116 VRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWW 175
Query: 153 FAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIG 212
F M+L+ KLN+ P G S + P + D LKH ILP ++ V G WA
Sbjct: 176 FGMILILLFSFKLNLLPSGGMTS--IPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWV 233
Query: 213 MRNMIIYELEADYVRYLEALGASE-KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEI 271
RN++I L+ D++ A G E K++ HA R A P +T L + GAI TE
Sbjct: 234 TRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTES 293
Query: 272 VFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVRVSYEE 329
VFN+PG+G L A + L+ G + + L+ + D+ Y +DPRV+V +
Sbjct: 294 VFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQ 351
>sp|P94311|DPPB_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|11279742|pir||T44636 dipeptide transport protein
dppB [imported] - Bacillus firmus
>gi|1813496|gb|AAB41689.1| (U64514) dipeptide
transporter protein dppB [Bacillus firmus]
Length = 333
Score = 138 bits (344), Expect = 1e-31
Identities = 93/335 (27%), Positives = 168/335 (49%), Gaps = 22/335 (6%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
Y R++++ + + + + L+PG+P Q ++ SPQ L E+ GL
Sbjct: 4 YAMRRLLLLIPVLIGMTIVTFSIIHLIPGNPAQTILGEQA--SPQAIADL----EERLGL 57
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLG 125
N+P +VQ+ + K L GDLG S+ + I L I + A++ + IIG G
Sbjct: 58 NEPYWVQYGLYMKDLATGDLGTSLRTNKPIMEEIWPYLAATIELTIFAMIFAIIIGVNAG 117
Query: 126 ALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPY------------- 170
++ +N +D M + S+P FW A++ + +L P
Sbjct: 118 IVSAWKQNSWFDYLSMFIALVGVSMPIFWLALMEQWIFAQELGWLPAFGRDNPRDPIIST 177
Query: 171 QGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLE 230
G Y + + S + +KH ILP ++L + + A R+ ++ L +DY+R +
Sbjct: 178 TGLYVFDTIISGQFDKTWESIKHLILPGIALGTIPMAIIARMTRSSMLEVLRSDYIRTVN 237
Query: 231 ALGASEKLLT-KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQ 289
A G+ + ++ KHA +NA++P +T + LQ G ++ GAI TE +F++PG+G + A +
Sbjct: 238 AKGSGQGVVIYKHALKNALIPVLTVVGLQTGNLLGGAILTETIFSWPGIGRYIFEAINYR 297
Query: 290 DYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
DY ++Q G L+V ++ N +D++Y+ IDPR++
Sbjct: 298 DYPVIQSGILVVATIFVLINLFVDLLYSYIDPRIK 332
>emb|CAC16444.1| (AL450165) putative oligopeptide ABC transporter integral membrane
protein [Streptomyces coelicolor]
Length = 330
Score = 138 bits (344), Expect = 1e-31
Identities = 97/323 (30%), Positives = 168/323 (51%), Gaps = 26/323 (8%)
Query: 7 LKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLN 66
LKR + F+ F A T+ + L RL GDP++I++ + E+E +L+ GL+
Sbjct: 30 LKRLLTALFVLFCTA-TVAFFLVRLS-GDPVKILLPPD---ATAEQERVLRHS---LGLD 81
Query: 67 KPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGA 126
+ L+ Q++++ + LL D G S++Y VS I+ LP I + A+ ++ ++ G
Sbjct: 82 QSLFAQYLDYLRGLLHLDFGDSLVYGQPVSEILADRLPATIELAAAALAVTLVVAIPAGI 141
Query: 127 LAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSI 184
+A + + DK +M S P FW ++L+ V L P G +
Sbjct: 142 VAAMRRGRGTDKTVMTGVLLGQSTPPFWVGILLILVFAVWLRALPASGYGT--------- 192
Query: 185 TFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLTKHA 243
L + +LP ++L + + A +R+ +I L +D++R A G +++ +H
Sbjct: 193 ------LANLVLPAVTLAVYSVAVVARLLRSSLIDVLSSDHIRSARAKGFGPLQVVLRHG 246
Query: 244 YRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVII 303
RNA LP VT + L++G ++ GAI TE VF++PGVG L + A ++D+ L+Q L
Sbjct: 247 LRNASLPVVTVVGLEVGNLLGGAILTERVFSWPGVGQLTVEAISNRDFPLVQATVLFFAA 306
Query: 304 AVLVANFIIDIVYALIDPRVRVS 326
+V N ++D+ Y+ +DPRVR S
Sbjct: 307 TFVVVNLLVDLSYSFLDPRVRTS 329
>pir||F72720 probable oligopeptide transport system permease protein oppB
APE0303 - Aeropyrum pernix (strain K1)
>gi|5103942|dbj|BAA79258.1| (AP000059) 342aa long
hypothetical oligopeptide transport system permease
protein oppB [Aeropyrum pernix]
Length = 342
Score = 138 bits (343), Expect = 1e-31
Identities = 108/346 (31%), Positives = 178/346 (51%), Gaps = 40/346 (11%)
Query: 10 KIVIY-FLTF---LFAVT-LNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
K +IY FL+ LF ++ L ++L RL+ GDP I I+ ++P++ + + +LY
Sbjct: 4 KYIIYRFLSAIPTLFGLSILVFILTRLV-GDPAAIYIHP--DMTPEDVQRV----RELYH 56
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWL 124
+ PLYVQ+I + K +L+GDLGYS+ V+ IK LP + + A LS I+G +L
Sbjct: 57 FDDPLYVQYIYWLKGVLQGDLGYSVTANMPVTEAIKSFLPATLELALYAFTLSIIVGVYL 116
Query: 125 GALAGKNKKYDKYLMPVFYFLA----SIPYFWFAMVLVYF--------------LGVKLN 166
G A NK DK + + LA S+P FW A++L+Y L V+
Sbjct: 117 GTKAAANK--DKLIDHLTRLLALSGYSMPVFWLALMLLYLFYNVLDFVGPGRLSLEVRFK 174
Query: 167 IFP-------YQGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIY 219
P Y G + + + + +I +D +KH I P L+ + I + +R+ +I
Sbjct: 175 YMPPYGDFKFYTGLLTIDALLNRNIEVFIDAVKHLIPPVLTQTYIHIAIFIRVLRSSMIE 234
Query: 220 ELEADYVRYLEALGASEKLLTK-HAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGV 278
E+ +YV + + G +++ K + RN+ + V LQ +++G + TE VFN+PG+
Sbjct: 235 EMNKEYVDFALSKGLRREVVLKDYVRRNSYISLVNVAGLQFVGLMSGVVLTETVFNWPGL 294
Query: 279 GVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
G +AA+ D + G L V +V N +DI+ A +DPR+R
Sbjct: 295 GRFAANAAIQLDPAAVVGFTLFVGTLFIVVNLAVDILLAYLDPRIR 340
>gb|AAK41511.1| Oligo/dipeptide transport, permease protein (dppB-1) [Sulfolobus
solfataricus]
Length = 348
Score = 137 bits (342), Expect = 2e-31
Identities = 95/347 (27%), Positives = 174/347 (49%), Gaps = 23/347 (6%)
Query: 1 MGFKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGL------------- 47
MGF Y+ +K++IYF L +T+ ++ + + I IN +
Sbjct: 1 MGFTTYMIKKVLIYFSVLLATLTILYIFTFPILQEVIAKSINFQVAQFSQTLFKNAHNLN 60
Query: 48 SPQERETLLKFYEDL---YGLNKPLYVQFINFWKSLLRGDLGYSILYRD-----SVSNII 99
S Q + + K+ E L YGLN+P+ ++ +L+R D G + + VS+II
Sbjct: 61 STQIQIAVEKYRESLIAAYGLNQPIIDKYFIQMYNLMRFDFGTAYFLQAPSGSREVSSII 120
Query: 100 KHALPYDIAILFPAIVLSWIIGNWLGALAGKNKKYDKYLMPVFYFLASIPYFWFAMVLVY 159
+ LP I + A ++ + G +G L+ K+K ++K + + +SIP +W VL+
Sbjct: 121 AYYLPNTILLFTTATIVFIVAGTIIGLLSAKSKFWEKVIAIIAVIHSSIPTWWLGFVLIA 180
Query: 160 FLGVKLNIFPYQGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIY 219
L + +FP G + P + + L H LP +++FIV +G +A +R+++
Sbjct: 181 ALAYAVKVFP-PGGMTSVPPPKNPFDYGISVLYHMALPLITIFIVNVGGFAYIVRSLVTS 239
Query: 220 ELEADYVRYLEALGA-SEKLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGV 278
++ D+V +A G + ++L +H R+ T L L + G++ TE+VF +PGV
Sbjct: 240 IMKEDFVITAKARGLPASRILYRHVLRSGSPSIATQAILALAGSLGGSLTTEVVFEWPGV 299
Query: 279 GVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVRV 325
G+L A D ++ G ++ I +L+ F+ ++VY L+DPR++V
Sbjct: 300 GLLTYVAITLNDLPVILGITYVLTIVLLLGLFLGELVYGLLDPRIKV 346
>pir||C70141 oligopeptide ABC transporter, permease protein (oppB-1) homolog -
Lyme disease spirochete >gi|2281460|gb|AAC46285.1|
(AF000366) oligopeptide permease homolog B [Borrelia
burgdorferi] >gi|2688245|gb|AAC66724.1| (AE001140)
oligopeptide ABC transporter, permease protein (oppB-1)
[Borrelia burgdorferi]
Length = 306
Score = 137 bits (341), Expect = 2e-31
Identities = 94/323 (29%), Positives = 168/323 (51%), Gaps = 23/323 (7%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
++ +KI+ T L + L + + R+ PG P +S + PQ + L++ Y
Sbjct: 3 KFTLKKILGIIPTLLVIIFLCFFVMRMAPGSPF----DSEKPIDPQVKARLMEKYH---- 54
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRD-SVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
L+KP Y+Q + + LRGDLG S+ +D +VS IK P + + ++++S IG
Sbjct: 55 LDKPFYIQAFYYITNALRGDLGPSLKKKDLTVSQYIKLGFPKSLTLGVISLIISLSIGIP 114
Query: 124 LGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
+G LA KN D + + SIP F +L YF +K + G ++
Sbjct: 115 IGILAAIYKNTYVDYIITSIAILGISIPLFVIGPILQYFFAIKWGLLYTSGWITER--GG 172
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGAS-EKLLT 240
FS + ILP ++L + + +A +R ++ +++D++R A G S +K++
Sbjct: 173 FS---------NLILPIITLSMPNVAIFARIIRGSMLEIIQSDFIRTARAKGLSFKKIVI 223
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
KH R A+LP V+ + +++G++ E +F G+G+ + +AL++DY +L GG L+
Sbjct: 224 KHMLRGAMLPVVSYIGPAFAAIISGSVVIEKIFRIAGMGMFITESALNRDYPVLMGGLLV 283
Query: 301 VIIAVLVANFIIDIVYALIDPRV 323
I +L++ I DI+Y ++DPRV
Sbjct: 284 YSIILLISILISDIIYKILDPRV 306
>sp|P77308|YDDR_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YDDR
>gi|7449121|pir||A64902 peptide transport system
permease protein b1486 - Escherichia coli
>gi|1742426|dbj|BAA15141.1| (D90789) Dipeptide transport
system permease protein DppB. [Escherichia coli]
>gi|1742437|dbj|BAA15151.1| (D90790) Dipeptide transport
system permease protein DppB. [Escherichia coli]
>gi|1787761|gb|AAC74559.1| (AE000245) putative transport
system permease protein [Escherichia coli K12]
Length = 340
Score = 136 bits (338), Expect = 5e-31
Identities = 98/341 (28%), Positives = 171/341 (49%), Gaps = 25/341 (7%)
Query: 1 MGFKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYE 60
M F L+++ L + +++ L+PGDP +++ + + +++
Sbjct: 1 MTFWSILRQRCWGLVLVVAGVCVITFIISHLIPGDPARLLAGD------RASDAIVENIR 54
Query: 61 DLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWII 120
GL++PLYVQF + L GDLG SI V ++ P + + F A++L+ +I
Sbjct: 55 QQLGLDQPLYVQFYRYVSDLFHGDLGTSIRTGRPVLEELRIFFPATLELAFGALLLALLI 114
Query: 121 GNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAM-VLVYFLGVKLNIFPYQGAYSQN 177
G LG L+ +N+ D + + S P FW + V+V F G L I P G
Sbjct: 115 GIPLGILSAVWRNRWLDHLVRIMAITGISTPAFWLGLGVIVLFYG-HLQILPGGGRLDDW 173
Query: 178 LVPSFSIT--FIVDFL------------KHWILPFLSLFIVMIGSWAIGMRNMIIYELEA 223
L P +T +++D L +H ILP L+L V +G A +R+ ++ +L
Sbjct: 174 LDPPTHVTGFYLLDALLEGNGEVFFNALQHLILPALTLAFVHLGIVARQIRSAMLEQLSE 233
Query: 224 DYVRYLEALGASE-KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLL 282
DY+R A G ++ +A NA++P +T L L LG ++ GA+ TE VF +PG+G +
Sbjct: 234 DYIRTARASGLPGWYIVLCYALPNALIPSITVLGLALGDLLYGAVLTETVFAWPGMGAWV 293
Query: 283 MHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRV 323
+ + + D+ + G ++V A ++ N ++D++Y IDPR+
Sbjct: 294 VTSIQALDFPAVMGFAVVVSFAYVLVNLVVDLLYLWIDPRI 334
>pir||C82242 oligopeptide ABC transporter, permease protein VC1092 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655561|gb|AAF94251.1| (AE004190) oligopeptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 306
Score = 135 bits (337), Expect = 6e-31
Identities = 88/324 (27%), Positives = 166/324 (51%), Gaps = 25/324 (7%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
+++ ++I T L +T+++ L R PG+P +S L P+ + YG
Sbjct: 3 KFIAKRIFEAIPTMLVLITISFFLMRYAPGNPF----SSERPLPPEVMANI----NAKYG 54
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRD-SVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
L+KP+ Q++ + ++++GD G S Y+D +V+ +I ALP + I A V + I+G
Sbjct: 55 LDKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVT 114
Query: 124 LGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
+G +A +N D +M +P F A VL+Y ++ ++FP G
Sbjct: 115 VGTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGF--- 171
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEK-LLT 240
++ LP L + ++ + ++A R +I L ++++R A G S ++
Sbjct: 172 ----------EYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVV 221
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
KHA + A+LP V+ + ++ G++ E +F PG+G L ++AA ++DY L+ G ++
Sbjct: 222 KHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTIL 281
Query: 301 VIIAVLVANFIIDIVYALIDPRVR 324
+ ++ N I+DI+ A IDP++R
Sbjct: 282 IGFLFILFNAIVDILLAYIDPKIR 305
>pir||F72451 probable peptide transport system permease protein APE2258 -
Aeropyrum pernix (strain K1) >gi|5105959|dbj|BAA81270.1|
(AP000064) 339aa long hypothetical peptide transport
system permease protein [Aeropyrum pernix]
Length = 339
Score = 134 bits (335), Expect = 1e-30
Identities = 87/323 (26%), Positives = 162/323 (49%), Gaps = 20/323 (6%)
Query: 17 TFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKPLYVQFINF 76
T L T+ +++ R++PGDP+ + + + P+E E + + GL++PL+ Q+I++
Sbjct: 21 TVLILYTVVFIVLRVIPGDPVTAALGTR-SIPPEELEAI----RERLGLDQPLWRQYIDY 75
Query: 77 WKSLLRGDLGYSI-LYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAG-KNKKY 134
++RGD G S+ LY V+ I P + + ++S ++G G +A +
Sbjct: 76 LLGVMRGDFGESMTLYGRPVARDIMERFPATLELTIFGFIVSVVLGVGSGVVAAFRGGLV 135
Query: 135 DKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFP-------------YQGAYSQNLVPS 181
D+ L ++ W ++L Y +KL I P G Y + + +
Sbjct: 136 DRLLRTSSIVAYTLFIPWLGLMLKYVFSIKLGILPTGGRIDPRVNLDVVTGLYVLDSIIT 195
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLTK 241
+ +V ++H ILP L+L IV+ G + +R + L ++ A G E +
Sbjct: 196 ANPAALVSAVEHLILPSLTLGIVLSGVYTRLVRIHVAEALRSEVAVAYRARGLRESRIAV 255
Query: 242 HAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMV 301
H R +++P +T + LQ +++ GA+ TE F++PG+G LL+ +DY +QG +
Sbjct: 256 HMLRISLIPTITMMGLQFAILLGGAVLTEATFSWPGLGSLLVERISYRDYSTIQGVTVFF 315
Query: 302 IIAVLVANFIIDIVYALIDPRVR 324
V + + I+DI+YA+++PRVR
Sbjct: 316 AFMVGLVSLIVDIIYAIVNPRVR 338
>sp|P45096|DPPB_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|1074012|pir||G64188 transmembrane protein dppB -
Haemophilus influenzae (strain Rd KW20)
>gi|972895|gb|AAA95972.1| (U17295) DppB [Haemophilus
influenzae] >gi|1574114|gb|AAC22840.1| (U32798)
dipeptide ABC transporter, permease protein (dppB)
[Haemophilus influenzae Rd]
Length = 333
Score = 132 bits (330), Expect = 4e-30
Identities = 87/338 (25%), Positives = 173/338 (50%), Gaps = 26/338 (7%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
+++ ++I++ TF+ + + L +PGDP++IM+ GL+ + + ++ G
Sbjct: 3 KFVFKRILMVIPTFIAITLITFALVHFIPGDPVEIMMGER-GLTAEVHQQMMH----QLG 57
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWL 124
L+ PLY Q+ ++ ++++GD G S + V P + F A+ S + G L
Sbjct: 58 LDLPLYQQYFHYIGNVIQGDFGASFRTQQPVLTEFFTLFPATAELAFFALFWSLLGGIIL 117
Query: 125 GALAGKNKKYDKYLMPVFYFLA----SIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVP 180
G +A K D ++ + S+P FW+ ++L+ ++ +L + P G
Sbjct: 118 GTIAAVKK--DSWISHTVTAASLTGYSMPIFWWGLILILYVSPQLGL-PQGGRLDNEFWI 174
Query: 181 SFSITFIV-------------DFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVR 227
F++ + +K ILP + L V + R+ ++ L DY+R
Sbjct: 175 DTPTGFMLIDSWLSGVSGAFENAVKSLILPAIVLGTVPLAIITRMTRSAMLEVLGEDYIR 234
Query: 228 YLEALGAS-EKLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAA 286
+A G S +++ HA RNA++P VT + L + +++GA+ TE +F++PG+G ++ A
Sbjct: 235 TAKAKGLSYTRIVIVHALRNALIPVVTVVGLIVAQLLSGAVLTETIFSWPGIGKWIIDAI 294
Query: 287 LSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
++DY +LQG L++ ++V N +D++Y +++PR+R
Sbjct: 295 QARDYPVLQGSVLIIATIIIVVNLTVDLLYGVVNPRIR 332
>gb|AAC64253.1| (AF042861) putative OppB [Treponema denticola]
Length = 341
Score = 132 bits (329), Expect = 6e-30
Identities = 88/328 (26%), Positives = 165/328 (49%), Gaps = 15/328 (4%)
Query: 3 FKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMIN--SALGLSPQERETLLKFYE 60
+ +Y+ +++V + ++L LMPGDPI M++ ++P+ER ++
Sbjct: 19 YVRYIFKRLVSIIPVLIIMSVAIFILINLMPGDPILAMLDPEKTKAMTPEERALYIENMR 78
Query: 61 DLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWII 120
G +K ++ + RG+ GYSI Y V+ I + I +L+++I
Sbjct: 79 KFLGYDKGPVERYFLWMGDTFRGEFGYSIKYNKPVNEFIGTYIKRSFRINIWGFLLAFLI 138
Query: 121 GNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYS-QN 177
+G A KN +DK + + S+P F+ A++L+ + + I P+ G +
Sbjct: 139 SIPVGITAAVKKNSFFDKTVTVLTIVGISLPSFFLALLLIMVFVIFMQILPFSGMSDPRG 198
Query: 178 LVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEK 237
++P + + ILP + + + +R+ +I L++DY+R A G SEK
Sbjct: 199 ILPDWH---------YIILPVTVVVLTSLVGLIRYVRSAMIEILKSDYIRTARAKGLSEK 249
Query: 238 LLT-KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQG 296
++ +HA++NA++P VT + L + + G+I E +F YPG+G+L+ +A +D +LQ
Sbjct: 250 VVIYRHAFQNALIPVVTLIGLYIPGLFGGSIVVEKIFAYPGMGLLMNYAYGFKDRAVLQT 309
Query: 297 GFLMVIIAVLVANFIIDIVYALIDPRVR 324
L + L+ N ID+ Y ++DPR+R
Sbjct: 310 VLLFFGLLTLLGNIFIDVGYMVVDPRIR 337
>gb|AAC69838.1| (AF076683) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 311
Score = 132 bits (329), Expect = 6e-30
Identities = 90/324 (27%), Positives = 157/324 (47%), Gaps = 20/324 (6%)
Query: 3 FKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDL 62
FK LKR I + F + + +LL + +P + I A G +P L+ +
Sbjct: 2 FKFILKR-IALMFPLMIVVSFMTFLLTYITNENPA-VTILHAQG-TPNVTPELIAETNEK 58
Query: 63 YGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGN 122
YG N PL +Q+ N+ ++ + G S + D V+ I A + + + V+ I
Sbjct: 59 YGFNDPLLIQYKNWLLEAMQFNFGTSYITGDPVAERIGPAFMNTLKLTIISSVMVMITSI 118
Query: 123 WLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVP 180
LG ++ + K D+ + V +FL ++P +W A +L+ ++ VKLNI P G
Sbjct: 119 ILGVVSALKRGKFTDRAIRSVAFFLTALPSYWIASILIIYVSVKLNILPTSGLTGP---- 174
Query: 181 SFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLT 240
+ +ILP + + I G + +R ++ +L DYV YL A G L
Sbjct: 175 -----------ESYILPVIVITIAYAGIYFRNVRRSMVEQLNEDYVLYLRASGVKSITLM 223
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
H RNA+ V+ + + +++ G + E +F +PG+G L + A L D+ ++Q L+
Sbjct: 224 LHVLRNALQVAVSIFCMSIPMIMGGLVVIEYIFAWPGLGQLSLKAILEHDFPVIQAYVLI 283
Query: 301 VIIAVLVANFIIDIVYALIDPRVR 324
V + +V N + DI+ AL++PR+R
Sbjct: 284 VAVLFIVFNTLADIINALLNPRLR 307
>gb|AAF73091.1|AF103793_2 (AF103793) transmembrane protein OppB [Listeria monocytogenes]
Length = 309
Score = 132 bits (329), Expect = 6e-30
Identities = 93/326 (28%), Positives = 162/326 (49%), Gaps = 27/326 (8%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
+Y ++++ +T ++ ++L + +PG P + + LS ++ + + YG
Sbjct: 3 KYTLKRVLYMLITLFIIASVTFVLMKFLPGTPYR----NQEKLSDEQ----IHMTNEKYG 54
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSI-LYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
LN + VQ+ N+ L++GDLG S L VS I+ + + + A+ I G
Sbjct: 55 LNDSIPVQYFNYMTGLVKGDLGVSFQLDNRPVSEILSALIGPSVQLALEAMAFGVIFGIL 114
Query: 124 LGALAGK-NKKYDKYLMPVFYFLA-SIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
LG +A ++ Y L S+P F FA VL Y+LG KL IFP G +
Sbjct: 115 LGVIAAMYQNRWPDYTSTFIAILGKSVPSFVFATVLQYWLGAKLQIFPVAGW------GT 168
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLT 240
F+ T ILP +L + + + A MR +I +DYV +A G S ++
Sbjct: 169 FADT---------ILPAFALAMFPLATAARFMRTELIDVFASDYVLLAKAKGNSRTEVAV 219
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
KHA RNA++P +T L ++ G++ E +++ PG+G + + + DY ++ G ++
Sbjct: 220 KHAIRNALIPLITVLGPLSVALMTGSLVIENIYSIPGIGSQFVSSIQTNDYPVIMGTTIL 279
Query: 301 VIIAVLVANFIIDIVYALIDPRVRVS 326
+ ++ ++DI+Y LIDPR+RVS
Sbjct: 280 FAVMLVFVILVVDILYGLIDPRIRVS 305
>pir||B72617 probable dipeptide transport system permease protein APE1395 -
Aeropyrum pernix (strain K1) >gi|5105078|dbj|BAA80392.1|
(AP000061) 336aa long hypothetical dipeptide transport
system permease protein [Aeropyrum pernix]
Length = 336
Score = 131 bits (327), Expect = 9e-30
Identities = 92/332 (27%), Positives = 159/332 (47%), Gaps = 18/332 (5%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
++L R+++ + T + + +L+ ++PG+P ++ SP+ E +++ Y
Sbjct: 10 RFLVRRLLTFIPTLVGVTFVTFLIATVVPGNPAKLWAGGEKA-SPEVVEQIVREYR---- 64
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWL 124
L++P + Q+ F LL + S + + V ++I LP I + A V ++G L
Sbjct: 65 LDRPFWEQYFFFMYKLLTNTM-ISPVTSNYVWDMIVERLPVTIQLTLLAFVFIILLGIPL 123
Query: 125 GALAGKNKK--YDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGA----YSQNL 178
G ++ + D + + S+P FW A +L++ K + G YS
Sbjct: 124 GIISALTRDTIIDAAIRIMALVGISVPIFWLAYLLIFVFYTKYRLITLAGTPEPPYSITG 183
Query: 179 VPSFSITFIVD------FLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEAL 232
+P ++D L+ + +P +L IG A +RN + + DYV +++A
Sbjct: 184 IPLIDSIIMLDAATFEDVLRRYTIPAFTLAYPSIGFVARLVRNSFLDAMSGDYVEFMDAR 243
Query: 233 GASEKLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYF 292
G +H RN+ +P VT L L G ++ GA TE +F PG+G L+ + + DY
Sbjct: 244 GLPSTWKYRHILRNSSIPIVTVLGLIFGGLLTGAPITETIFGLPGLGKFLLDSINNYDYL 303
Query: 293 LLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
L GG L V I L N ++DI YA+IDPRVR
Sbjct: 304 SLMGGVLFVGIIYLTVNLLVDITYAIIDPRVR 335
>pir||S76320 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001545|dbj|BAA10172.1| (D64000) oligopeptide
transport system permease protein [Synechocystis sp.]
Length = 337
Score = 131 bits (325), Expect = 2e-29
Identities = 86/325 (26%), Positives = 161/325 (49%), Gaps = 9/325 (2%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
Y+ ++++ +T L A L++ + +L PG + L +P+ L+ + +GL
Sbjct: 15 YVVQRLIEGLITLLLASLLSFAIVQLAPGSYLD-----TLQQNPKISPETLQQLKVQFGL 69
Query: 66 NKPLYVQFINFWKSLL-RGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWL 124
++P YVQ+ + ++ R + G S +Y SV++++ +P + + +I+L+W I L
Sbjct: 70 DQPWYVQYWRWLTQVVTRFNFGESFVYNRSVASLLIERIPATLLLAITSIILTWAIAIPL 129
Query: 125 GALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSF 182
G + +N D+ L + Y P F A++L++ + P S +
Sbjct: 130 GIVGAVQQNTFIDRSLRVISYIGQGFPSFITALLLLFLAQSVSPLLPVGDMTSIDFAEFS 189
Query: 183 SITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLTK 241
+ D H ILP L+L I MR ++ L DY++ A G E +++
Sbjct: 190 WPHKVWDVAWHMILPTLALSITSFAGLQRLMRGQLLDVLRQDYIQTARAKGLPENRVIYV 249
Query: 242 HAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMV 301
HA RNAI P +T L + +++GA E FN+PG+G L++ A +QD +L+ G +M
Sbjct: 250 HALRNAINPLITILGFEFASLLSGAFIAEFFFNWPGLGRLILQAVTAQDLYLVMGSLMMG 309
Query: 302 IIAVLVANFIIDIVYALIDPRVRVS 326
++V N + D++ DPR++++
Sbjct: 310 ATLLIVGNLLADLLLKFTDPRIQLA 334
>pir||B75381 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6459333|gb|AAF11132.1|AE002000_8
(AE002000) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 333
Score = 130 bits (324), Expect = 2e-29
Identities = 88/329 (26%), Positives = 168/329 (50%), Gaps = 13/329 (3%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
Y+ R+++ + TF+ A L + + + PGD + S L +P + ++ +GL
Sbjct: 10 YILRRVLQFIPTFVLATMLAFFITQAAPGDFL-----SQLKENPSVKPETIERLRREFGL 64
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLG 125
++P++VQ++ ++K+LL GDLG S Y+ V+ +I+ + ++ + VL + + +G
Sbjct: 65 DQPVFVQYLYWFKNLLMGDLGDSFQYKRPVAEVIQGPFLNSLILVVISTVLHFAVSIPVG 124
Query: 126 ALAGKNKK--YDKYLMPVFYFLASIPYFWFAMVLVY-FLGVKLNI---FPYQGAYSQNLV 179
+ +D+ Y IP F+F ++ +Y L +K P G S L
Sbjct: 125 VYSALKPYSFWDRVFTFFSYIGLGIPSFFFGLLAIYAMLQLKQQFGWDLPLGGKSSSALP 184
Query: 180 PSFS-ITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKL 238
S + + D H ++P + L + I + +R ++ L DY+R A G +++
Sbjct: 185 TDISPLRHVWDVFLHALIPSIILVLRGISGESRFIRGQMLEVLGQDYIRTARAKGLNDRA 244
Query: 239 LT-KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGG 297
+T KHA++ A++P + GL L ++ GA EIVFN+PG+ L + A +QD ++L
Sbjct: 245 VTYKHAFKLAMIPTIAGLGGLLPALIGGAGFLEIVFNWPGLTPLQLTALGNQDIYILMAV 304
Query: 298 FLMVIIAVLVANFIIDIVYALIDPRVRVS 326
+ + ++ N + D++ A +DPR+R S
Sbjct: 305 TALGTLLYMIGNLLSDLLLAAVDPRIRYS 333
>pir||C71841 probable peptide ABC transporter, ATP-binding protein -
Helicobacter pylori (strain J99)
>gi|4155769|gb|AAD06746.1| (AE001544) putative Peptide
ABC transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 348
Score = 130 bits (323), Expect = 3e-29
Identities = 98/340 (28%), Positives = 167/340 (48%), Gaps = 22/340 (6%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQE-------------- 51
Y+ +++++ T L +T+N+ L + PG PI+ M+ +E
Sbjct: 4 YILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQ 63
Query: 52 --RETLLKFYEDLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAI 109
LL+ + LYG +KP+ +++ K L+ D G S + V ++IK LP I++
Sbjct: 64 GLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISL 123
Query: 110 LFPAIVLSWIIGNWLGALAGK--NKKYDKYLMPVFYFLASIPYFWFAMVLVYFL--GVKL 165
F + +L ++I LG K N+ D V +IP F FA+VL+ F G
Sbjct: 124 GFFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAFLFAVVLIVFFAGGNYW 183
Query: 166 NIFPYQGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADY 225
+ FP +G S N ++ I D+L H LP L + + S + ++N + E+ Y
Sbjct: 184 HWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLCISLGGFASLTLLVKNSFLDEMGKLY 243
Query: 226 VRYLEALGASE-KLLTKHAYRNAILPQVTGLALQ-LGLMVAGAIATEIVFNYPGVGVLLM 283
V +A G S ++ H +RNAIL V G LG+ + ++ EIVF+ G+G+L
Sbjct: 244 VVSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLIEIVFSLDGLGLLGY 303
Query: 284 HAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRV 323
+ +S+DY ++ G + + LVA+ I D++ +IDPR+
Sbjct: 304 ESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRI 343
>pir||B82356 peptide ABC transporter, permease protein VC0172 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654575|gb|AAF93348.1| (AE004107) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 342
Score = 130 bits (323), Expect = 3e-29
Identities = 92/324 (28%), Positives = 168/324 (51%), Gaps = 15/324 (4%)
Query: 7 LKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLN 66
L + +++ F+ L A + L GDP++ ++ ++ S ER+ L D GLN
Sbjct: 26 LYQALIVMFVISLVAFAIQDNL-----GDPLRELVGQSV--SEAERQAL----RDELGLN 74
Query: 67 KPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGA 126
P +++ F + ++GDLG S ++ +I L + ++F A ++ + LG
Sbjct: 75 DPFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGV 134
Query: 127 LAGKNKK--YDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQG-AYSQNLVPSFS 183
+ + K + K +M SIP F A++L+Y ++L P G + NL+ S
Sbjct: 135 YSAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWXPSYGRGETVNLLGWES 194
Query: 184 ITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGAS-EKLLTKH 242
F +D L+H +LP ++L +M+ + +R+ ++ L ++Y+++ +A G K+ +H
Sbjct: 195 GFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQH 254
Query: 243 AYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVI 302
A +N +LP +T +Q+G MVA I TE VF +PG G L + A D L+ + V
Sbjct: 255 ALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVG 314
Query: 303 IAVLVANFIIDIVYALIDPRVRVS 326
+ +V N I+D++Y LI+P V ++
Sbjct: 315 LIFVVTNTIVDLLYGLINPTVNLT 338
>pir||C64676 oligopeptide ABC transporter, permease protein - Helicobacter
pylori (strain 26695) >gi|2314415|gb|AAD08295.1|
(AE000630) oligopeptide ABC transporter, permease
protein (oppB) [Helicobacter pylori 26695]
Length = 348
Score = 128 bits (318), Expect = 1e-28
Identities = 97/340 (28%), Positives = 166/340 (48%), Gaps = 22/340 (6%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQE-------------- 51
Y+ +++++ T L +T+N+ L + PG PI+ M+ +E
Sbjct: 4 YILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQ 63
Query: 52 --RETLLKFYEDLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAI 109
LL+ + LYG +KP+ +++ K L+ D G S + V ++IK LP I++
Sbjct: 64 GLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISL 123
Query: 110 LFPAIVLSWIIGNWLGALAGK--NKKYDKYLMPVFYFLASIPYFWFAMVLVYFL--GVKL 165
+ +L ++I LG K N+ D V +IP F FA+VL+ F G
Sbjct: 124 GLFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAFLFAVVLIVFFAGGNYW 183
Query: 166 NIFPYQGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADY 225
+ FP +G S N ++ I D+L H LP L + + S + ++N + E+ Y
Sbjct: 184 HWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLCISLGGFASLTLLVKNSFLDEMGKLY 243
Query: 226 VRYLEALGASE-KLLTKHAYRNAILPQVTGLALQ-LGLMVAGAIATEIVFNYPGVGVLLM 283
V +A G S ++ H +RNAIL V G LG+ + ++ EIVF+ G+G+L
Sbjct: 244 VLSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLIEIVFSLDGLGLLGY 303
Query: 284 HAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRV 323
+ +S+DY ++ G + + LVA+ I D++ +IDPR+
Sbjct: 304 ESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRI 343
>gi|10955082 agaB [Agrobacterium tumefaciens] >gi|11277276|pir||T45531 agaB
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665707|gb|AAB88467.1| (AF242881) agaB
[Agrobacterium tumefaciens]
Length = 323
Score = 127 bits (317), Expect = 1e-28
Identities = 91/323 (28%), Positives = 163/323 (50%), Gaps = 19/323 (5%)
Query: 7 LKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLN 66
L +++ + TL + + +MPGDP+ +++ SP+ + GL+
Sbjct: 11 LGSRLITALVQLWVIATLVFSIMYIMPGDPVLLLLGPESNPSPEAVAAM----RHQLGLD 66
Query: 67 KPLYVQFINFWKSLLRGDLGYSILYRDSVSNI--IKHALPYDIAILFPAIVLSWIIGNWL 124
+P+ Q++ + + GDLG S+ D VS + I ++P + + AI+L+ IIG +
Sbjct: 67 QPVMSQYLKWLGNAASGDLGNSV---DGVSVVEYITASIPKTMELATAAIILASIIGVPI 123
Query: 125 GALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSF 182
G A + + D L + S+P + +L+ +KL P G
Sbjct: 124 GIAAALRRGRFLDSLLTSLSTLGISLPVYILGSLLILMFSLKLGWLPSSG------YTDI 177
Query: 183 SITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEK-LLTK 241
S + + F K LP ++L + + S A R+ ++ L D+VR L A G E+ ++
Sbjct: 178 SRSVFLHFQK-LTLPAVTLGLGLAASIARMTRSSMLEILGRDFVRSLRARGMRERRVIWV 236
Query: 242 HAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMV 301
H RNA +P VT + LQLG ++ G + E ++N+PG+ LL+ A +++Y L+QG L +
Sbjct: 237 HVLRNAAIPIVTIIGLQLGNLMGGTVLVEALYNWPGLSTLLVTAVSNRNYPLVQGSILTI 296
Query: 302 IIAVLVANFIIDIVYALIDPRVR 324
++ N +DI+Y+L+DPR+R
Sbjct: 297 AALFILINLCVDILYSLLDPRIR 319
>sp|P26903|DPPB_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|98272|pir||S16648 dipeptide transport system
permease protein dppB - Bacillus subtilis
>gi|580850|emb|CAA40003.1| (X56678) dciAB [Bacillus
subtilis] >gi|2632014|emb|CAA05573.1| (AJ002571) DppB
[Bacillus subtilis] >gi|2633647|emb|CAB13150.1| (Z99110)
dipeptide ABC transporter (permease) [Bacillus subtilis]
Length = 308
Score = 126 bits (313), Expect = 4e-28
Identities = 91/325 (28%), Positives = 160/325 (49%), Gaps = 27/325 (8%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
+Y+ ++ T L TL ++L +++PG P N G + E + K E Y
Sbjct: 3 RYMIKRFWAMAATILVITTLTFVLMKVIPGSPF----NEERGTN----EAVQKNLEAYYH 54
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILY-RDSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
L+ PL Q+I + KS++ D G SI DSV+++++ P + AIV++ I G
Sbjct: 55 LDDPLIFQYIFYLKSIITFDFGPSIKKPSDSVNDMLERGFPVSFELGMTAIVIAVISGLV 114
Query: 124 LGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
LG +A +N D M + SIP F A +L+ V L +FP
Sbjct: 115 LGVIAALRRNGFLDYAAMSLAVLGISIPNFILATLLIQQFAVNLKLFP------------ 162
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLT 240
+ T+ H +LP +L + + A R+ ++ L DY+R +A G S K++
Sbjct: 163 -AATWTSPI--HMVLPTAALAVGPMAIIARLTRSSMVEVLTQDYIRTAKAKGLSPFKIIV 219
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
KHA RNA++P +T L + ++ G+ E +F PG+G + + +DY ++ G +
Sbjct: 220 KHALRNALMPVITVLGTLVASILTGSFVIEKIFAIPGMGKYFVESINQRDYPVIMGTTVF 279
Query: 301 VIIAVLVANFIIDIVYALIDPRVRV 325
+ +++ F++D+ Y L+DPR+++
Sbjct: 280 YSVILIIMLFLVDLAYGLLDPRIKL 304
>pir||B70789 probable peptidetransport system permease - Mycobacterium
tuberculosis (strain H37RV) >gi|2960089|emb|CAA17987.1|
(AL022121) dppB [Mycobacterium tuberculosis]
Length = 308
Score = 125 bits (312), Expect = 5e-28
Identities = 91/324 (28%), Positives = 153/324 (47%), Gaps = 26/324 (8%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
Y+ R++ + FL A L + + L+PGDP+ + L+P L Y L
Sbjct: 4 YVARRVAVMVPVFLGATLLIYGMVFLLPGDPVAALAGDR-PLTPAVAAQLRSHYH----L 58
Query: 66 NKPLYVQFINFWKSLLRGDLG--YSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
+ P VQ++ + +L GDLG YS L VS ++ HA P I + A+ + ++G
Sbjct: 59 DDPFLVQYLRYLGGILHGDLGRAYSGL---PVSAVLAHAFPVTIRLALIALAVEAVLGIG 115
Query: 124 LGALAGKNKK--YDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
G +AG + +D ++ + +IP F + + GV+L I P ++
Sbjct: 116 FGVIAGLRQGGIFDSAVLVTGLVIIAIPIFVLGFLAQFLFGVQLEIAPVTVGERASV--- 172
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLT 240
+LP + L + R+ + ADYVR A G S +++T
Sbjct: 173 ----------GRLLLPGIVLGAMSFAYVVRLTRSAVAANAHADYVRTATAKGLSRPRVVT 222
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
H RN+++P VT L LG ++ GAI TE +FN GVG +L A Q+ + +
Sbjct: 223 VHILRNSLIPVVTFLGADLGALMGGAIVTEGIFNIHGVGGVLYQAVTRQETPTVVSIVTV 282
Query: 301 VIIAVLVANFIIDIVYALIDPRVR 324
+++ L+ N ++D++YA +DPR+R
Sbjct: 283 LVLIYLITNLLVDLLYAALDPRIR 306
>pir||F72215 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4982325|gb|AAD36812.1|AE001813_4 (AE001813)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 341
Score = 125 bits (312), Expect = 5e-28
Identities = 88/336 (26%), Positives = 169/336 (50%), Gaps = 28/336 (8%)
Query: 1 MGFKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIM-INSALG--LSPQER--ETL 55
M F ++L ++++ ++ + + + ++L L PG+ ++ + A+ +P + +
Sbjct: 22 MRFLKFLLKRLLTIAISMVVVIVITYVLMWLAPGNFFELQRVRDAIARVTTPDDPAYQAT 81
Query: 56 LKFYEDLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNI---IKHALPYDIAILFP 112
LK +E+ YGLN PL+ Q + + K + G S + D NI IK P +
Sbjct: 82 LKGFEERYGLNNPLWKQILMYLKGAVVFKFGPS--FSDPARNIEDLIKEKFPITFTLALS 139
Query: 113 AIVLSWIIGNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPY 170
+I+ + ++G LG LA KN D M V +IP + A+ L+ + L P
Sbjct: 140 SILFALVVGVPLGILAALKKNTWIDYTAMTVSVIGVAIPSYVVAVFLILIFSIYLGWLPT 199
Query: 171 QGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLE 230
G + ++ ILP ++L + + S A R ++ L D++R
Sbjct: 200 SGW---------------EGIRTKILPTIALALGPLASVARFTRVSLLDTLNQDFIRTAY 244
Query: 231 ALGASEK-LLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQ 289
A G ++ ++ KHA R +++P VT + Q+ ++ G + E +F PG+G L +AA+++
Sbjct: 245 AKGGDDRTVIMKHALRPSMIPLVTIVGPQMAYLMVGTVWVENIFRIPGLGQLFANAAVTR 304
Query: 290 DYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVRV 325
DY LL ++ + V++ N I+D++YA++DPR+++
Sbjct: 305 DYPLLVTSTFILALTVMIMNLIVDVLYAILDPRIKL 340
>gb|AAG20589.1| (AE005129) dipeptide ABC transporter permease; DppB2 [Halobacterium
sp. NRC-1]
Length = 347
Score = 125 bits (312), Expect = 5e-28
Identities = 84/352 (23%), Positives = 169/352 (47%), Gaps = 34/352 (9%)
Query: 1 MGFKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYE 60
M K+++ +++++ T +++ L GDP ++++ +PQ++ +++ +
Sbjct: 1 MASKRFILKRLLLLVPVLFGVATFVFVILHLASGDPARVILGQR---APQQQ--VIQLRQ 55
Query: 61 DLYGLNKPLYVQFINFWKSLLRGDLG--YSILYRDSVSNIIKHALPYDIAILFPAIVLSW 118
+L GLN P+YVQ+ F + D G YS+ +V +++ +P + + +
Sbjct: 56 EL-GLNDPVYVQYARFLVDAAQFDFGQSYSVAQGTAVRSVLADKIPVTLELALYGQAIGI 114
Query: 119 IIGNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQ 176
++G LG ++ ++ D + S+P +W +L+ L +FP G
Sbjct: 115 LLGIPLGVISAVEQDTLTDHFGRIGALSGISVPIYWSGPLLILAFSTFLGVFPASGRIES 174
Query: 177 N--LVPSFSITFI---------------------VDFLKHWILPFLSLFIVMIGSWAIGM 213
L S+S+ + V + H ILP ++ I + + M
Sbjct: 175 TIFLADSWSLFGVTLPLTGMLTVDTLLLGNVSAWVSAVMHLILPAATIGIYSMALISRMM 234
Query: 214 RNMIIYELEADYVRYLEALGASEKL-LTKHAYRNAILPQVTGLALQLGLMVAGAIATEIV 272
R+ ++ + DY+R A G K+ + KH +RNA++P +T + +Q G ++ GA+ TE V
Sbjct: 235 RSSMLEVVRQDYMRTARAKGQGSKITIMKHGFRNALVPVITVIGIQFGSLLGGAVLTETV 294
Query: 273 FNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
F G+G +L+ A + DY L+QG L + + N ++D+ Y+ +DPR++
Sbjct: 295 FGIEGIGTILVSAINANDYPLVQGTVLTFALLFTLVNLLVDVTYSYLDPRIQ 346
>dbj|BAB04067.1| (AP001508) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 305
Score = 125 bits (311), Expect = 7e-28
Identities = 86/326 (26%), Positives = 160/326 (48%), Gaps = 32/326 (9%)
Query: 3 FKQYLKRKIVIYFLTFL-FAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYED 61
FK+ + V++ ++F+ FA+ + G+P+ +M+ ++ T
Sbjct: 6 FKRLAEMIPVLFIISFIVFALVF-------VAGNPVALMLPEDASQEDIDQLTAS----- 53
Query: 62 LYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIG 121
GL++P VQ+ + +L++GD G S Y S ++ LP + + A+VL+ +
Sbjct: 54 -LGLDQPFLVQYGKYLLNLVQGDFGESFRYNTSALPLVLERLPATLELAVAALVLAVAMA 112
Query: 122 NWLGALAGKNKKYDKYLMPVFYFLA--SIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLV 179
LG + + L+ + ++P FW ++L+ V L FP G +
Sbjct: 113 IPLGVWSATKQHSPVDLLAAGGSVIGKAMPNFWLGIMLILIFSVMLGWFPVSGRGT---- 168
Query: 180 PSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLL 239
L H +LP ++L + +R+ +I L DY+R + G E ++
Sbjct: 169 -----------LGHLVLPAMTLATGIAAEITRLLRSSMIEILNQDYIRTARSKGIREGMV 217
Query: 240 T-KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGF 298
KHA+RN+++P VT +ALQ +V G + TE VF++PG+G LL+ A ++D ++Q
Sbjct: 218 VYKHAFRNSLIPLVTIVALQTSTVVGGTLITETVFSWPGLGQLLIQAVHTRDMAIVQACV 277
Query: 299 LMVIIAVLVANFIIDIVYALIDPRVR 324
++ I V+ N + D++Y L+DPR++
Sbjct: 278 FVIAILVIFMNLVADVLYRLLDPRIK 303
>pir||E72424 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980546|gb|AAD35154.1|AE001692_11 (AE001692)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 328
Score = 123 bits (306), Expect = 3e-27
Identities = 87/322 (27%), Positives = 162/322 (50%), Gaps = 9/322 (2%)
Query: 10 KIVIYFLTFLFAVTL-NWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKP 68
K V+Y + LF +++ ++++ L PGD + + + + L+ + YGL+KP
Sbjct: 7 KRVLYAIPLLFVISIVSFIIIELPPGDYLTTYVMTLRQSGETIDQAALEVLKKRYGLDKP 66
Query: 69 LYVQFINFW--KSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGA 126
+ V++ +W + +GD GYS ++ VS+++ + + I I + +W+ G +G
Sbjct: 67 VIVRYF-YWIGNIITKGDFGYSFMWEKPVSDLLNQRVWWTILISVLSTAFAWVFGFLIGV 125
Query: 127 LAGKNK-KYDKYLMPVFYFLA-SIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS-FS 183
+G ++ Y+ V ++ + P F A++L++F+ V + G +S + +S
Sbjct: 126 YSGTHQYSIGDYVFTVLGYIGLATPNFLLALILLWFMFVTTGV-SLGGLFSPEYAGAPWS 184
Query: 184 ITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEK-LLTKH 242
VD LKH +P + L + +R ++ E+ YV A G E+ L+ K+
Sbjct: 185 WAKFVDLLKHIWIPVVVLGTGSMAGLIRVLRANLLDEINKPYVVAARARGVPERELVWKY 244
Query: 243 AYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVI 302
R A++P + L +V+GA+ T IV N P VG LL+ A SQD +L L++
Sbjct: 245 PLRVAVIPFASTAGWALPQIVSGAVVTGIVLNLPTVGTLLLDALTSQDMYLAGSLVLILS 304
Query: 303 IAVLVANFIIDIVYALIDPRVR 324
+ ++ I DI+ A +DPR+R
Sbjct: 305 VFTIIGTLISDILLAWLDPRIR 326
>pir||F75529 probable peptide ABC transporter, permease protein - Deinococcus
radiodurans (strain R1)
>gi|6458040|gb|AAF09943.1|AE001896_8 (AE001896) peptide
ABC transporter, permease protein, putative [Deinococcus
radiodurans]
Length = 340
Score = 123 bits (306), Expect = 3e-27
Identities = 90/289 (31%), Positives = 144/289 (49%), Gaps = 29/289 (10%)
Query: 61 DLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWII 120
D GL P VQ+ + S ++GDLG+S V + IK LP I + + ++
Sbjct: 54 DQRGLRDPFPVQYGRWAASAVQGDLGFSRASGKDVIDTIKERLPNTIELTLLTAIPILLL 113
Query: 121 GNWLGALAGKNKKYDKYLMPVFYFLA----SIPYFWFAMVLVYFLGVKLNIFPYQGAYSQ 176
WLG+L+ NK DK++ V L S+P F +VL+ L P GA
Sbjct: 114 SVWLGSLSALNK--DKFIDQVLRVLTILGYSLPTFVLGIVLLAIFYAYLGWLP--GAGQL 169
Query: 177 NLVPSFSITFIV--------------------DFLKHWILPFLSLFIVMIGSWAIGMRNM 216
+V F+++ + D ++H ILP +L IV MRN
Sbjct: 170 EVVNQFAVSDMKRYTGMLTVDALLNGRWSVAWDVVRHMILPATTLAIVSSADIIKVMRNS 229
Query: 217 IIYELEADYVRYLEALGASEKLLT-KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNY 275
++ L +DY+R A G + ++ KHA RNA+LP +T L + +++G++ TE +F Y
Sbjct: 230 MLDVLSSDYIRTARAKGLTPGVVNRKHARRNALLPVITLGGLLIINLLSGSLITETIFAY 289
Query: 276 PGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
PG+G ++ +AL D + G L+ + V+V N ++DI+Y ++DPRVR
Sbjct: 290 PGIGQWVVQSALQIDLAGVLGFALLSALIVVVMNTLVDILYGIVDPRVR 338
>gb|AAA62688.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 311
Score = 123 bits (305), Expect = 4e-27
Identities = 91/326 (27%), Positives = 159/326 (47%), Gaps = 27/326 (8%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
+Y+ R++V +T VT+ + L + PG P S P E E L + YG
Sbjct: 3 KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPF-----SGEKKLPPEIEANLNAH---YG 54
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYR-DSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
L+KPL+VQ++++ KS+ D G S Y+ SV+++I P + AI+L+ +G
Sbjct: 55 LDKPLFVQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVL 114
Query: 124 LGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
G +A NK D + + F S+P F A VL Y +KL +FP G S
Sbjct: 115 FGVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGW------DS 168
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGAS-EKLLT 240
++ TF LP ++L + + A R+ +I L +DY+R +A G S ++L
Sbjct: 169 WAYTF---------LPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSAQRLQC 219
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
+ + L ++ G+ E +F PG+G +++ ++DY ++ G +
Sbjct: 220 GTPFETHFCRLLHILGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVF 279
Query: 301 VIIAVLVANFIIDIVYALIDPRVRVS 326
+ +L+ I+D++Y +IDPR+++S
Sbjct: 280 FSVILLLCVLIVDVLYGIIDPRIKLS 305
>sp|P31132|OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|7442404|pir||B36263 oligopeptide transport system
permease protein oppB - Escherichia coli
>gi|1787497|gb|AAC74326.1| (AE000223) oligopeptide
transport permease protein [Escherichia coli K12]
Length = 306
Score = 122 bits (304), Expect = 5e-27
Identities = 87/324 (26%), Positives = 159/324 (48%), Gaps = 25/324 (7%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
+++ R+ + T +T+++ + RL PG P L P+ + E Y
Sbjct: 3 KFILRRCLEAIPTLFILITISFFMMRLAPGSPF----TGERTLPPEVMANI----EAKYH 54
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRD-SVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
LN P+ Q+ ++ K L GD G S Y+D SV++++ + P + A L+ I+G
Sbjct: 55 LNDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVS 114
Query: 124 LGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
G +A +N K+D +M + IP F A +LV + L+ P G
Sbjct: 115 AGVIAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWNG------ 168
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGAS-EKLLT 240
LK ILP ++L + I S A R +I L ++++R A G +++
Sbjct: 169 -------GALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIL 221
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
+HA + A+LP ++ + ++ G++ E ++ PG+G L ++ AL++DY L+ ++
Sbjct: 222 RHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTIL 281
Query: 301 VIIAVLVANFIIDIVYALIDPRVR 324
V ++ N I+D++YA+IDP++R
Sbjct: 282 VGALTILFNAIVDVLYAVIDPKIR 305
>pir||A71212 probable oligopeptide transport system permease protein appB -
Pyrococcus horikoshii >gi|3258405|dbj|BAA31088.1|
(AP000007) 349aa long hypothetical oligopeptide
transport system permease protein appB [Pyrococcus
horikoshii]
Length = 349
Score = 122 bits (304), Expect = 5e-27
Identities = 87/286 (30%), Positives = 136/286 (47%), Gaps = 11/286 (3%)
Query: 48 SPQE-RETLLKFYEDLYGLNKPLYVQFINFWKSLLRGDLGYSIL----YRDSVSNIIKHA 102
+P E R + +Y + L++P + + + + K + D G + + +V NII A
Sbjct: 61 NPDEWRAERIAYYRHQFKLDRPYWWRVLYYSKRTIMLDFGNTRIPIFGTERNVKNIISLA 120
Query: 103 LPYDIAILFPAIVLSWIIGNWLGALAGK--NKKYDKYLMPVFYFLASIPYFWFAMVLVYF 160
LP I + A ++ IIG LG A + +D+ L + SIP +WF M+ +
Sbjct: 121 LPRTILLFTTAQIIVIIIGLLLGVKAAQMVGSAFDRSLSILALVTTSIPMWWFGMMSLLI 180
Query: 161 LGVKLNIFPYQGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYE 220
KL FP NL + ++D K +LP ++ V+ G WA RN++I
Sbjct: 181 FAFKLGWFPANSMPDPNLT---GLAHVLDVAKRLVLPIFTIVFVLFGGWAWVTRNIMITT 237
Query: 221 LEADYVRYLEALGASE-KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVG 279
++ D++ A G E K++ HA R A P VT L + GAI TE VFN+PG+G
Sbjct: 238 MQEDFIMAARAKGVPERKVIYGHALRAAAPPIVTMTIFSLLGSLGGAIITESVFNWPGMG 297
Query: 280 VLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVRV 325
+ A + + L+ G + + L I DI Y +DPRVRV
Sbjct: 298 RVYWIAIQTNEINLVMGLTFISVALYLTGVIIADISYGFLDPRVRV 343
>sp|P08005|OPPB_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|72438|pir||QREBOB oligopeptide transport system
permease protein oppB - Salmonella typhimurium
>gi|47803|emb|CAA29040.1| (X05491) Opp B (AA1-306)
[Salmonella typhimurium]
Length = 306
Score = 122 bits (302), Expect = 8e-27
Identities = 87/324 (26%), Positives = 159/324 (48%), Gaps = 25/324 (7%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
+++ R+ + T +T+++ + RL PG P L P+ +L E Y
Sbjct: 3 KFILRRCLEAIPTLFILITISFFMMRLAPGSPF----TGERALPPE----VLANIEAKYH 54
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRD-SVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
LN P+ Q+ ++ K L GD G S Y+D +V++++ + P + A +L+ IIG
Sbjct: 55 LNDPIMTQYFSYLKQLAHGDFGPSFKYKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVS 114
Query: 124 LGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
G +A +N ++D +M IP F A +LV + L P G
Sbjct: 115 AGVIAALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQWLPGGGWNG------ 168
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGAS-EKLLT 240
LK ILP ++L + I S A R +I L ++++R A G +++
Sbjct: 169 -------GALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIF 221
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
+HA + A+LP ++ + ++ G++ E ++ PG+G L ++ AL++DY L+ ++
Sbjct: 222 RHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTIL 281
Query: 301 VIIAVLVANFIIDIVYALIDPRVR 324
V ++ N I+D++YA+IDP++R
Sbjct: 282 VGALTILFNAIVDVLYAVIDPKIR 305
>gb|AAB67064.1| (U94729) putative transmembrane protein [Salmonella typhimurium]
Length = 323
Score = 122 bits (302), Expect = 8e-27
Identities = 91/305 (29%), Positives = 156/305 (50%), Gaps = 13/305 (4%)
Query: 14 YFLTFLFAVTL----NWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKPL 69
+FL + + L ++L P DPI+ I + L P E+ + +GL++PL
Sbjct: 7 HFLRLIILLVLVAAGTFILLSFSPVDPIRAYIGNDLLHVPPEQYARIAAR---WGLDQPL 63
Query: 70 YVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAG 129
+ +F +++ LL+GD+GYS+L+ V+++I+ A+L A +LS ++G LG LAG
Sbjct: 64 WERFGHWFWRLLQGDMGYSMLFNMPVASVIRERFATSFALLAGAWLLSGVLGVTLGFLAG 123
Query: 130 K--NKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSITFI 187
+ ++ DK + + Y L+S+P FW AM L + L + P A+ + +
Sbjct: 124 RFLHRWPDKMICRISYLLSSLPTFWIAM-LSGAVCRPLAVLPVCCAWDPG--NNAGTALL 180
Query: 188 VDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLTKH-AYRN 246
+ L+H +LP +L ++ +G A+ R I ++++++R+ A G L +H R+
Sbjct: 181 SERLRHLVLPVCALSLLGMGQIALHTREKIASVMKSEFIRFARAQGDKGWSLLRHQVLRH 240
Query: 247 AILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVL 306
AI P + LG ++ GA+ E VF YPG+G + A L D LL G L + V
Sbjct: 241 AITPALCLQFASLGELMGGALLAEKVFAYPGLGQATIDAGLRGDVPLLMGIVLFCTLLVF 300
Query: 307 VANFI 311
N I
Sbjct: 301 AGNTI 305
>pir||E72107 peptide ABC transporter, permease protein CP0568 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376470|gb|AAD18352.1| (AE001606) Oligopeptide
Permease [Chlamydophila pneumoniae CWL029]
>gi|7189480|gb|AAF38387.1| (AE002215) peptide ABC
transporter, permease protein [Chlamydophila pneumoniae
AR39] >gi|8978572|dbj|BAA98409.1| (AP002545)
oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 314
Score = 122 bits (302), Expect = 8e-27
Identities = 89/327 (27%), Positives = 160/327 (48%), Gaps = 28/327 (8%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
Y+K +I+ L+ +TL +L+ + +PGDP + L E +L+ + YGL
Sbjct: 4 YIKNRILFNLLSLWIVLTLTFLVMKTIPGDPFNDEGCNVLS------EEVLQTLKSRYGL 57
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILYRD-SVSNIIKHALPYDIAILFPAIVLSWIIGNWL 124
+KPLY Q+ + S+ + D G S++Y+D V+NII A P + ++ LS G L
Sbjct: 58 DKPLYQQYTQYLHSIAKLDFGNSLVYKDRKVTNIISTAFPISAILGLQSLFLSIGGGIAL 117
Query: 125 GALAG-KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQ--GAYSQNLVPS 181
G +A K KK +Y++ SIP F FA +L Y VK+ + P G+++ ++P+
Sbjct: 118 GTIAALKKKKQRRYILGASILQISIPAFIFATLLQYVFAVKIPLLPIACWGSFTHTILPT 177
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLT 240
++ + P FI+ + ++ L DYV A G S K++
Sbjct: 178 LALA---------VTPMA--FIIQLTYSSVSAA------LNKDYVLLAYAKGLSPLKVVI 220
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
KH AI P ++ A ++ G A E +F PG+G + + +DY + G +
Sbjct: 221 KHILPYAIFPTISYSAFLTTTVITGTFAIENIFCIPGLGKWFICSIKQRDYPVALGLSVF 280
Query: 301 VIIAVLVANFIIDIVYALIDPRVRVSY 327
++++ + D++ ++IDP++R ++
Sbjct: 281 YGTLFMLSSLLSDLIQSIIDPQIRYAH 307
>pir||E72300 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981607|gb|AAD36141.1|AE001766_7 (AE001766)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 327
Score = 121 bits (300), Expect = 1e-26
Identities = 85/324 (26%), Positives = 165/324 (50%), Gaps = 7/324 (2%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERE-TLLKFYEDLYG 64
Y+ R+++ F+T +++++ +L PGD + I + L +S ++ + ++ + YG
Sbjct: 4 YILRRLITAFITLWIISIISFVIIQLPPGDFLTSYI-AQLKVSGEDVDIATIEALKKQYG 62
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWL 124
L+KP+YVQ++ + +L GD GYS ++ V+ ++ + L + + +++ SWI G +
Sbjct: 63 LDKPIYVQYLKWLWGILHGDFGYSFSWKKPVNELLWNRLGVTVLVATLSLIFSWIFGFII 122
Query: 125 GALAGKNK-KYDKYLMPVFYFLA-SIPYFWFAMVLVYFLGVKLNIFPYQGAYS-QNLVPS 181
G + + YL + ++ ++P F A++L++ + L G +S + L
Sbjct: 123 GMYSAVHPYSIGDYLATILGYIGLAVPNFLLALILMWGI-YSLTGINLSGLHSVKYLNTP 181
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLT 240
+I +D L H +P L L + +R ++ EL YV + G E K+
Sbjct: 182 MTIDKFLDILNHLWIPVLVLGTSGMAGLIRTLRANLLDELHKPYVEAALSKGLPENKVFW 241
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
K+ R A++P ++ + L + +GA T IV N P VG LL++A +QD +L +
Sbjct: 242 KYPLRIAMIPFISTVGWSLPWIFSGATITAIVLNLPSVGPLLLNALKNQDMYLAGSLVMF 301
Query: 301 VIIAVLVANFIIDIVYALIDPRVR 324
+ ++ I DI+ A +DPR+R
Sbjct: 302 LSFFTVIGTLISDILLAWVDPRIR 325
>sp|Q07742|OPPB_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|1075747|pir||C53290 oligopeptide transport protein
oppB - Lactococcus lactis subsp. lactis
>gi|308852|gb|AAA16165.1| (L18760) transmembrane protein
[Lactococcus lactis]
Length = 319
Score = 120 bits (298), Expect = 2e-26
Identities = 85/320 (26%), Positives = 150/320 (46%), Gaps = 11/320 (3%)
Query: 9 RKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKP 68
R+I++ L + +LMPGDP +I P E E L + GL P
Sbjct: 7 RRILLMIPQLFILSILVFFFAKLMPGDPFSGLIGPHT--DPHEVEALRR----AAGLYDP 60
Query: 69 LYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALA 128
+ Q++ + + + G+LG S ++ V +I H + +++L+++ + +A
Sbjct: 61 WWEQYLRWLGNAIHGNLGMSYNLKEPVMTVIGHRAINTFWMSLLSVILTYLFAIPMSIVA 120
Query: 129 GKN--KKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSITF 186
+N K D+ + IP + F +++++ G LN FP G S + + + F
Sbjct: 121 ARNEGKWQDQLWLTYNSITFGIPPYVFYLLIIFIFGYSLNWFPTGGTVSPDAMGIIPVFF 180
Query: 187 IVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLL-TKHAYR 245
+ H ILP SL + R+ I+ E DYVR A G EK++ +H R
Sbjct: 181 --SKIYHMILPAFSLAVFGTVGIFTYFRSGILDEQTQDYVRTARAKGVKEKVIFRRHILR 238
Query: 246 NAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAV 305
NA LP + + ++ GAI E +F YPG+G L + + +DY ++ L+ +
Sbjct: 239 NASLPIASNFGFVITGLLGGAIFAETIFGYPGLGQLFITSISGRDYSMITALILLNGFSG 298
Query: 306 LVANFIIDIVYALIDPRVRV 325
L+ + DI+ A++DPR+R+
Sbjct: 299 LLGALLPDIIMAMVDPRIRI 318
>sp|P50989|OPPB_LACLC OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|495179|gb|AAB00535.1| (U09553) transmembrane protein
[Lactococcus lactis]
Length = 319
Score = 120 bits (297), Expect = 3e-26
Identities = 85/320 (26%), Positives = 149/320 (46%), Gaps = 11/320 (3%)
Query: 9 RKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKP 68
R+I++ L + +LMPGDP +I P E E L + GL P
Sbjct: 7 RRILLMIPQLFILSILVFFFAKLMPGDPFSGLIGPHT--DPHEVEALRR----AAGLYDP 60
Query: 69 LYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALA 128
+ Q++ + + + G+LG S ++ V +I H + +++L+++ + +A
Sbjct: 61 WWEQYLRWLGNAIHGNLGMSYNLKEPVMTVIGHRAINTFWMSLLSVILTYLFAIPMSIVA 120
Query: 129 GKN--KKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSITF 186
+N K D+ + IP + F +++++ G LN FP G S + + + F
Sbjct: 121 ARNEGKWQDQLWLTYNSITFGIPPYVFYLLIIFIFGYSLNWFPTGGTVSPDAMGIIPVFF 180
Query: 187 IVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLL-TKHAYR 245
+ H ILP SL + R+ I+ E DYVR A G EK++ +H R
Sbjct: 181 --SKIYHMILPAFSLAVFGTVGIFTYFRSGILDEQTQDYVRTARAKGVKEKVIFRRHILR 238
Query: 246 NAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAV 305
NA LP + + ++ GAI E +F YPG+G L + + +DY ++ L+
Sbjct: 239 NASLPIASNFGFVITGLLGGAIFAETIFGYPGLGQLFITSISGRDYSMITALILLNGFLG 298
Query: 306 LVANFIIDIVYALIDPRVRV 325
L+ + DI+ A++DPR+R+
Sbjct: 299 LLGALLSDIIMAMVDPRIRI 318
>dbj|BAA14776.1| (D90763) Oligopeptide transport system permease protein OppB.
[Escherichia coli] >gi|1805525|dbj|BAA16039.1| (D90852)
Oligopeptide transport system permease protein OppB.
[Escherichia coli]
Length = 306
Score = 120 bits (297), Expect = 3e-26
Identities = 86/324 (26%), Positives = 158/324 (48%), Gaps = 25/324 (7%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
+++ R+ + T +T+++ + RL PG P L P+ + E Y
Sbjct: 3 KFILRRCLEAIPTLFILITISFFMMRLAPGSPF----TGERTLPPEVMANI----EAKYH 54
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRD-SVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
LN P+ Q+ ++ K L GD S Y+D SV++++ + P + A L+ I+G
Sbjct: 55 LNDPIMTQYFSYLKQLAHGDFDPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVS 114
Query: 124 LGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
G +A +N K+D +M + IP F A +LV + L+ P G
Sbjct: 115 AGVIAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWNG------ 168
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGAS-EKLLT 240
LK ILP ++L + I S A R +I L ++++R A G +++
Sbjct: 169 -------GALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIL 221
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
+HA + A+LP ++ + ++ G++ E ++ PG+G L ++ AL++DY L+ ++
Sbjct: 222 RHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTIL 281
Query: 301 VIIAVLVANFIIDIVYALIDPRVR 324
V ++ N I+D++YA+IDP++R
Sbjct: 282 VGALTILFNAIVDVLYAVIDPKIR 305
>pir||F72371 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981014|gb|AAD35588.1|AE001726_22 (AE001726)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 345
Score = 119 bits (295), Expect = 5e-26
Identities = 87/301 (28%), Positives = 145/301 (47%), Gaps = 26/301 (8%)
Query: 47 LSPQERETLLKFYEDLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYD 106
L+P++ + L ++ YGLN V+++ + + LRGDLG+S++ ++ V + + LPY
Sbjct: 48 LTPEQMDAL----KEKYGLNDFFVVRYVKWLANTLRGDLGWSLVGKEPVKDALLRRLPYT 103
Query: 107 IAILFPAIVLSWIIGNWLGALAGKNK-KYDKYLMPVFYFLA-SIPYFWFAMVLVYFLGVK 164
+ + AI +G WLG A ++ K+ + + +F + S P F F ++++
Sbjct: 104 VELALYAIFPVVFVGIWLGVKAAVHRGKFLDHFIRIFAVVGWSFPDFVFGLLVLMIFYSI 163
Query: 165 LNIFP-------------------YQGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVM 205
LN P Y + + + + + D LKH I P ++L +
Sbjct: 164 LNWLPPGNLSMWAEEVIKSPEFHRYTKLITIDALLNGRLDIFWDGLKHLIGPIITLSWLW 223
Query: 206 IGSWAIGMRNMIIYELEADYVRYLEALGASEKL-LTKHAYRNAILPQVTGLALQLGLMVA 264
R+ ++ L +YVR A G E + + KHA RNA++P T + + +
Sbjct: 224 WAYLLRITRSSMLEVLNKEYVRTARAKGLPEDVVINKHARRNALIPVTTVAGGMVIGLFS 283
Query: 265 GAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
G + E VFN GVG AAL DY + L ++V N IIDI+YALIDPR+R
Sbjct: 284 GTVIVETVFNRTGVGSFTAQAALQLDYASVMASALFFSTILVVGNLIIDILYALIDPRIR 343
Query: 325 V 325
+
Sbjct: 344 L 344
>gi|10954708 hypothetical ABC-transporter gene~similar to agaB gene
[Agrobacterium rhizogenes] >gi|8918708|dbj|BAA97773.1|
(AB039932) hypothetical ABC-transporter gene~similar to
agaB gene [Agrobacterium rhizogenes]
>gi|10567372|dbj|BAB16181.1| (AP002086) hypothetical
ABC-transporter gene~similar to agaB gene [Agrobacterium
rhizogenes]
Length = 319
Score = 119 bits (295), Expect = 5e-26
Identities = 84/339 (24%), Positives = 166/339 (48%), Gaps = 47/339 (13%)
Query: 9 RKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKP 68
R+++ L L + + + L R++PGDP ++++ G++P + ++ GL++
Sbjct: 2 RRLLQGGLIILLVIFIIFTLLRVVPGDPARLIVG---GMAP---DAVVAMKAKELGLDRA 55
Query: 69 LYVQFINFWKSLLRGDLGYSIL------------YRD-------SVSNIIKHALPYDIAI 109
+ +QF+++ L GDLG S + Y D V ++I LP + +
Sbjct: 56 IPLQFVSYLGHLATGDLGTSFVRPKSGASLAGSAYNDPTREERAKVLDLILGTLPMTLQL 115
Query: 110 LFPAIVLSWIIGNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNI 167
A+V++ ++ LG G + + DK + + S P FW +VL FL VKL +
Sbjct: 116 AAVALVIALLVAVPLGLAGGLYQGRWPDKLALALGSIFVSTPNFWLGIVLTLFLSVKLRV 175
Query: 168 FPYQG--AYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADY 225
P G + ++P+ I V+ + +IL L++ + + L D+
Sbjct: 176 LPAIGYNGFEYTILPA--IVLAVE-IAPFILRTLTVSVAQV--------------LREDF 218
Query: 226 VRYLEALGASE-KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMH 284
++ G S + + H N+ +P + L +QLG+++ G + E +F+YPG+G+L ++
Sbjct: 219 IQLAAVRGLSRGRTIFSHVLGNSAVPLINLLGVQLGMLLGGVLVVEFIFDYPGLGLLTIN 278
Query: 285 AALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRV 323
A +D+ L+QG + + + +V N ++D++ IDPR+
Sbjct: 279 AVQQRDFPLIQGVAIFISVMFVVINILVDLIAMTIDPRL 317
>dbj|BAB03748.1| (AP001507) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 314
Score = 118 bits (294), Expect = 7e-26
Identities = 84/301 (27%), Positives = 155/301 (50%), Gaps = 20/301 (6%)
Query: 28 LPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKPLYVQFINFWKSLLRGDLGY 87
L L+PGDP ++ + +PQ+ T+ E L GLN P+ VQ+ N+ +++GDLG
Sbjct: 26 LLHLVPGDPAIMIAGES---APQQ--TVENIRERL-GLNDPVPVQYFNYVSGVIQGDLGT 79
Query: 88 SILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAGKNKKY---DKYLMPVFYF 144
S V++ I + + +I+LS +G + + K+Y D LM + F
Sbjct: 80 SFRSGRPVADDIAQRFWVTLELSIYSIILSVFLG-LIAGIVSATKRYSFADTSLMIIALF 138
Query: 145 LASIPYFWFAMVLVYFLGVKLNIF-PYQGAYSQNLVPSFSITFIVDFLKHWILPFLSLFI 203
S+P FW ++L+ + + + P+ A+ PS +F + +LP ++L
Sbjct: 139 GLSMPNFWLGLMLIQWFAIGYTPWLPFDTAW---FAPSGWGSF-----RQIVLPVITLGT 190
Query: 204 VMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLT-KHAYRNAILPQVTGLALQLGLM 262
A R+ ++ L DY+R A G E+++ +HA +NA++P VT + +Q G +
Sbjct: 191 AGAAIVARMTRSSMLEVLHQDYIRTARAKGVKERVVVYRHALKNALIPVVTVVGIQFGFL 250
Query: 263 VAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPR 322
+ G++ TE VF G+G L++ A +D+ ++QG L++ + + N ++DI Y ++ R
Sbjct: 251 LGGSVLTEQVFAINGLGRLIIEAIRQRDFPVVQGAVLVISVLFVFVNLLVDITYRFLNKR 310
Query: 323 V 323
+
Sbjct: 311 I 311
>sp|P33914|YEJB_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YEJB
>gi|7442459|pir||A64987 hypothetical 40.4 kD protein in
bcr 5' region - Escherichia coli (strain K-12)
>gi|1736843|dbj|BAA15986.1| (D90849) Oligopeptide
transport system permease protein OppB. [Escherichia
coli] >gi|1788504|gb|AAC75239.1| (AE000307) putative
transport system permease protein [Escherichia coli K12]
Length = 364
Score = 118 bits (293), Expect = 9e-26
Identities = 90/360 (25%), Positives = 160/360 (44%), Gaps = 46/360 (12%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMI------------------------ 41
YL R++++ T +T+N+ + ++ PG P+ I
Sbjct: 4 YLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGNAGVLPGAGGEGVRASHA 63
Query: 42 ------------NSALGLSPQERETLLKFYEDLYGLNKPLYVQFINFWKSLLRGDLGYSI 89
GL P+ ++ YG +KP++ ++ +R D G S+
Sbjct: 64 QTGVGNISDSNYRGGRGLDPE----VIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSL 119
Query: 90 LYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAG--KNKKYDKYLMPVFYFLAS 147
SV +IK +LP I + + ++ +++ LG ++D + +
Sbjct: 120 FRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVYNGSRFDVWSSAFIIIGYA 179
Query: 148 IPYFWFAMVLVYFL--GVKLNIFPYQGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVM 205
IP F FA++L+ F G ++FP +G S N I D+L H LP L+ I
Sbjct: 180 IPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGG 239
Query: 206 IGSWAIGMRNMIIYELEADYVRYLEALGASEK-LLTKHAYRNAILPQVTGL-ALQLGLMV 263
+ + +N + E+ YV A G SEK +L KH +RNA+L + G A + +
Sbjct: 240 FAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFF 299
Query: 264 AGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRV 323
G++ E++F+ G+G+L A +S+DY ++ G + + L+ N + DI Y L+DPR+
Sbjct: 300 TGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
>pir||T35939 probable transport permease protein - Streptomyces coelicolor
>gi|4158198|emb|CAA22761.1| (AL035206) putative
transport permease protein [Streptomyces coelicolor
A3(2)]
Length = 334
Score = 118 bits (293), Expect = 9e-26
Identities = 85/301 (28%), Positives = 153/301 (50%), Gaps = 18/301 (5%)
Query: 33 PGDPIQIMINSA-LGLSPQERETLLKFYEDLYGLNKPLYVQFINFWKSLLRGDLGYSILY 91
P DP++ +A LG ++ETL + E+L G+++ ++ ++ S L GDLG+S +
Sbjct: 43 PFDPVRAYAGTAALGA---DQETLDRLRENL-GVDESFVARWWHWLTSALTGDLGHSSVL 98
Query: 92 RDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAGKN--KKYDKYLMPVFYFLASIP 149
R V+ +I L + + A ++ +G LG LA + D+ + + Y L + P
Sbjct: 99 RQPVTQVIGERLVWSALLCAVAFAVAVGLGLLLGVLAARRPGSVLDRAVTSLSYTLEAAP 158
Query: 150 YFWFAMVLVYFLGVKLNIFPYQG---AYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMI 206
FW A++ V+ ++ ++ P G SQ + P H +LP L + +
Sbjct: 159 VFWIALLAVWLFALQWDVLPAGGLTDTASQQVTPG-------QVAGHIVLPAGVLAVSQL 211
Query: 207 GSWAIGMRNMIIYELEADYVRYLEALGASE-KLLTKHAYRNAILPQVTGLALQLGLMVAG 265
+ + +R + L D VR A G +E +L HA R+ +LP +T + ++ ++ G
Sbjct: 212 PWFTLYVRQGVGDALAEDPVRGARARGLAEGTVLVGHALRSGLLPVLTLIGSRVPELITG 271
Query: 266 AIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVRV 325
A+ E VF++PG+ + AA + D+ LL ++ +AVL N + D++Y L DPRV++
Sbjct: 272 ALLVETVFSWPGIAAATVEAATAVDFPLLAALTVLATVAVLAGNLLADLLYGLFDPRVKL 331
Query: 326 S 326
S
Sbjct: 332 S 332
>dbj|BAB05794.1| (AP001514) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 310
Score = 118 bits (293), Expect = 9e-26
Identities = 80/317 (25%), Positives = 158/317 (49%), Gaps = 27/317 (8%)
Query: 12 VIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKPLYV 71
+I FLTF+F L P DP ++++ A G+ E + + ++L GL++P +
Sbjct: 18 IISFLTFVFI--------NLSPLDPAEVVLQ-AQGVPTITDELIAQTKQEL-GLDQPFLI 67
Query: 72 QFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAGKN 131
Q+ ++ + L+ D G+S + ++ VS II A + + + ++ ++ LG +
Sbjct: 68 QYFHWLLACLQLDFGHSYVTKEPVSAIIGPAFFNTLKLTLVSSIVIIVLSILLGVICAMK 127
Query: 132 --KKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSITFIVD 189
K DK + + L IP + A ++++ VKL++ P G +D
Sbjct: 128 GGKAIDKSIRGFSFLLMGIPSYLLASFMIWYFSVKLDLLPTSG---------------LD 172
Query: 190 FLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLTKHAYRNAIL 249
+ +ILP + +G + +RN ++ L D+V Y A G SEK +T H RN++
Sbjct: 173 SYQSYILPVTVITASYVGIYFRSVRNSMLSHLNEDFVLYGRACGISEKKVTIHILRNSLQ 232
Query: 250 PQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVAN 309
++ + + ++ G + E VF +PG+G L + + L++D+ ++Q L++ ++ + N
Sbjct: 233 VAISIFCMGIPTILGGTVVVENVFAWPGLGSLSVKSILNRDFPIIQAYVLILAVSFVFFN 292
Query: 310 FIIDIVYALIDPRVRVS 326
DI+ A ++P+ R S
Sbjct: 293 TFSDIINAAMNPKQRKS 309
>gb|AAG20458.1| (AE005118) oligopeptide ABC permease; AppB [Halobacterium sp.
NRC-1]
Length = 326
Score = 118 bits (292), Expect = 1e-25
Identities = 92/328 (28%), Positives = 157/328 (47%), Gaps = 16/328 (4%)
Query: 4 KQYLKRKIVIYFLTFLFAVTLNWLLPRLMP--GDPIQIMINSALGLSPQE-RETLLKFYE 60
K Y+ ++++ F+ A+TL + L P G +M SA G Q+ RE Y
Sbjct: 2 KWYIVKRVLWTFVVMWIALTLTFGLLVASPDTGQTKSVMSCSASGGDAQQCREQ----YR 57
Query: 61 DLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWII 120
+ L+KP+ +++N+ ++ + G+S SV I A PY P +V+S I+
Sbjct: 58 ERQNLDKPITERYVNYVTNMATLNWGWSESRSQSVMAAISEAWPYTAQYAIPVLVVSTIL 117
Query: 121 GNWLGALAGKNKKYDK--YLMP-VFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQN 177
G LG L K Y K YL V +F SIP FWFA+VL+ LG F + Y Q+
Sbjct: 118 GYGLG-LYSAYKPYTKADYLGSFVGFFGISIPNFWFALVLIILLGTH---FEFISTYYQS 173
Query: 178 LVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE- 236
+P + + ++P L + R I ++ ++V+ +A GAS+
Sbjct: 174 GIPINQGWASMANITQLLIPSFVLLTASLAWQMRYSRAQAIEQMNQEFVKVAKAKGASQW 233
Query: 237 KLLTKHAYRNAILPQVTGLALQL-GLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQ 295
+L+ H +R A +P T L + +G++ E +F+ PG+G++ A QD L+
Sbjct: 234 RLMIHHVFRMAAVPLTTSFVSSLLAIFWSGSVIIEQIFSIPGLGLMTFTAITEQDTTLVL 293
Query: 296 GGFLMVIIAVLVANFIIDIVYALIDPRV 323
++ + ++ N I D+ Y ++DPR+
Sbjct: 294 ATTMITVFLAIIGNLIEDVSYTILDPRI 321
>pir||T34758 oligopeptide transport system integral membrane protein -
Streptomyces coelicolor >gi|3402245|emb|CAA20181.1|
(AL031184) oligopeptide transport system integral
membrane protein [Streptomyces coelicolor A3(2)]
Length = 332
Score = 117 bits (290), Expect = 2e-25
Identities = 90/287 (31%), Positives = 139/287 (48%), Gaps = 38/287 (13%)
Query: 64 GLNKPLYVQFINFWKSLLRGD---------------LGYSILYRDSVSNIIKHALPYDIA 108
GL P++VQ F+K + G GYS SV ++ P +A
Sbjct: 60 GLGDPVFVQAWEFFKGIFAGRTYAAGGDVTHCAAPCFGYSFKTEQSVWPVLTERFPVTLA 119
Query: 109 ILFPAIVLSWIIGNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGV-KL 165
+ A VL I G G L+ + +D+ M V S+P +YF G+ L
Sbjct: 120 LALGAAVLWLIFGVAAGVLSALKRGTLWDRGAMVVALAGVSLP--------IYFTGLLSL 171
Query: 166 NIFPYQ-GAYSQNLVPSFSITFIVDFLKHW----ILPFLSLFIVMIGSWAIGMRNMIIYE 220
IF Y G VP + D L W ILP+++L + +A R ++
Sbjct: 172 AIFSYGLGWIDGEFVP------LEDSLTGWLGGMILPWITLAFLYAAMYARITRATMLEI 225
Query: 221 LEADYVRYLEALGASEKL-LTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVG 279
L DY+R A G E++ ++KHA R+ + P +T L + LG ++ GAI TE F+ PG+G
Sbjct: 226 LGEDYIRTARAKGLKEQVVISKHAMRSTLTPLLTMLGMDLGALMGGAILTETTFSLPGLG 285
Query: 280 VLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVRVS 326
++ A + D + G L+ +AVL+AN ++DI+YA+IDPRVR++
Sbjct: 286 QKVLDAIKNHDLPFILGVVLITSLAVLIANLVVDILYAVIDPRVRLA 332
>pir||F83419 probable permease of ABC transporter PA1809 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9947793|gb|AAG05198.1|AE004607_4 (AE004607) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 360
Score = 116 bits (287), Expect = 5e-25
Identities = 92/355 (25%), Positives = 162/355 (44%), Gaps = 41/355 (11%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMI------------------------ 41
Y+ R++++ T + +N+++ + PG P++ MI
Sbjct: 4 YILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIAKLEGFDAASGGATGRISGGGGEV 63
Query: 42 -------NSALGLSPQERETLLKFYEDLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDS 94
A GL P+ L+K E +YG +K +F+ K+ L D G S
Sbjct: 64 AVAGSQYRGAQGLDPE----LVKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAK 119
Query: 95 VSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAG--KNKKYDKYLMPVFYFLASIPYFW 152
V+++I LP I++ + ++ +++ LG +D + +IP F
Sbjct: 120 VTDLIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSVFDIWTSSAIIVGYAIPAFL 179
Query: 153 FAMVLVYFL--GVKLNIFPYQGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWA 210
FA++LV G + FP +G S N ++D+ H LP +L I +
Sbjct: 180 FAILLVVLFAGGSYWDWFPLRGLTSNNFDQLSLGGKVLDYFWHLALPVTALVIGNFATIT 239
Query: 211 IGMRNMIIYELEADYVRYLEALGASEK-LLTKHAYRNAILPQVTGL-ALQLGLMVAGAIA 268
+ +N + E+ YV A G +E+ +L H +RNA+L + GL A LG+ G++
Sbjct: 240 LLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPAALLGIFFTGSLL 299
Query: 269 TEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRV 323
E++F+ G+G+L AA+++DY ++ G + + LV I DIVY L+DPR+
Sbjct: 300 IEVIFSLDGLGLLSFEAAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRI 354
>gb|AAA62689.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 300
Score = 115 bits (286), Expect = 6e-25
Identities = 88/315 (27%), Positives = 152/315 (47%), Gaps = 27/315 (8%)
Query: 16 LTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKPLYVQFIN 75
+T VT+ + L + PG P S P E E L + YGL+KPL+VQ+++
Sbjct: 3 ITLFVIVTVTFFLMQAAPGGPF-----SGEKKLPPEIEANLNAH---YGLDKPLFVQYVS 54
Query: 76 FWKSLLRGDLGYSILYR-DSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAG--KNK 132
+ KS+ D G S Y+ SV+++I P + AI+L+ +G G +A NK
Sbjct: 55 YLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAALYHNK 114
Query: 133 KYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSITFIVDFLK 192
D + + F S+P F A VL Y +KL +FP G S++ TF
Sbjct: 115 WQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGW------DSWAYTF------ 162
Query: 193 HWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGAS-EKLLTKHAYRNAILPQ 251
LP ++L + + A R+ +I L +DY+R +A G S ++L +
Sbjct: 163 ---LPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSAQRLQCGTPFETHFCRL 219
Query: 252 VTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFI 311
+ L ++ G+ E +F PG+G +++ ++DY ++ G + + +L+ I
Sbjct: 220 LHILGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLI 279
Query: 312 IDIVYALIDPRVRVS 326
+D++Y +IDPR+++S
Sbjct: 280 VDVLYGIIDPRIKLS 294
>gb|AAC69843.1| (AF076684) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 328
Score = 115 bits (286), Expect = 6e-25
Identities = 85/318 (26%), Positives = 159/318 (49%), Gaps = 26/318 (8%)
Query: 12 VIYFLTFLFAV-TLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKPLY 70
++ + LF + TL ++L +L PG+P+ +++ + E+ K D GLN L
Sbjct: 11 LMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATK---DKLGLNDSLL 67
Query: 71 VQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAGK 130
VQ+ ++ LL +LG S ++ V+ I+ + P + I F +V+S I LG +A K
Sbjct: 68 VQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIPLGIIAAK 127
Query: 131 --NKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSITFIV 188
+K DK + + S+P F+ ++L++ + +NI
Sbjct: 128 RFHKWTDKVIRVISTLSISLPAFFIGIILLFIVTNLMNIDSV------------------ 169
Query: 189 DFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLTKH-AYRNA 247
L +ILP ++L + M +R+ ++ L+++ V+ G +E+ + H +
Sbjct: 170 -ILSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPT 228
Query: 248 ILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLV 307
ILP + L + LG ++ G + E +F+ PG+G LLM + S+DY ++QG L + V++
Sbjct: 229 ILPIIPLLGISLGSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVI 288
Query: 308 ANFIIDIVYALIDPRVRV 325
N I D++ L+DP+ R+
Sbjct: 289 INTIADLLTLLLDPKQRL 306
>pir||D71014 probable dipeptide transport system permease protein dppB -
Pyrococcus horikoshii >gi|3257833|dbj|BAA30516.1|
(AP000006) 332aa long hypothetical dipeptide transport
system permease protein dppB [Pyrococcus horikoshii]
Length = 332
Score = 114 bits (282), Expect = 2e-24
Identities = 87/341 (25%), Positives = 157/341 (45%), Gaps = 34/341 (9%)
Query: 4 KQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLY 63
K++L R+++ + T + + +L+ +P DP + A + + ++ + +Y
Sbjct: 5 KKFLIRRLLTFIPTIIGVTLIVFLIAYKIPADPAK-----AWAGGEKATQQAIELIKKMY 59
Query: 64 GLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFP--------AIV 115
L++P Y Q++ K L+ + + + + YD+ FP A +
Sbjct: 60 HLDRPWYDQYVFLIKGLIANTI---------IDPRTSNPIMYDVGKRFPVTLQLAIIAFI 110
Query: 116 LSWIIGNWLGALAG-KNKKYDKYLMPVFYFLA-SIPYFWFAMVLVYFLGVKLNIFPYQGA 173
IIG LG ++ K + ++ +F L S P FW +++Y VK + G
Sbjct: 111 FILIIGIPLGIISALKRNTWVDTVVRIFALLGVSTPAFWLGYLMIYIFFVKYKVTTIAGV 170
Query: 174 YSQ----NLVPSFSITFIVDF------LKHWILPFLSLFIVMIGSWAIGMRNMIIYELEA 223
VP +F L + LP +L + +G A +RN + L +
Sbjct: 171 PPMPKPITYVPMIDALLRGNFDLFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSS 230
Query: 224 DYVRYLEALGASEKLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLM 283
DYV +L+A G + + +HA +NA++P VT L LQ G ++ G TE VF PG+G +
Sbjct: 231 DYVLFLKAKGVPKMRVYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAV 290
Query: 284 HAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
+ + D+ ++ + I + N I+D++YA+IDPRVR
Sbjct: 291 QSIQNLDFPVVIAITFIYAIIYVTINLIVDVLYAIIDPRVR 331
>pir||B75118 dipeptide abc transporter, permease protein (dppb) PAB1872 -
Pyrococcus abyssi (strain Orsay)
>gi|5458170|emb|CAB49659.1| (AJ248285) dipeptide ABC
transporter, permease protein (dppB) [Pyrococcus abyssi]
Length = 332
Score = 114 bits (282), Expect = 2e-24
Identities = 94/340 (27%), Positives = 161/340 (46%), Gaps = 32/340 (9%)
Query: 4 KQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLY 63
K++L R+I+ + T + + +L+ +P DP + A + + ++ + +Y
Sbjct: 5 KKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAK-----AWAGGEKATKEAIELIKKMY 59
Query: 64 GLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
L++P Y Q++ K L+ + +++I K P + A IIG
Sbjct: 60 HLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKR-FPVTFQLAIIAFFFILIIGIP 118
Query: 124 LGALAG-KNKKYDKYLMPVFYFLA-SIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
LG ++ K + ++ +F L S P FW +++Y VK + G VP
Sbjct: 119 LGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG------VPP 172
Query: 182 FS--ITFI--VDFL-------------KHWILPFLSLFIVMIGSWAIGMRNMIIYELEAD 224
F IT I +D L + W LP +L + +G A +RN + L +D
Sbjct: 173 FPEPITHIPMIDALLRGNFELFKQHLARFW-LPGFTLGFLGMGVTARFVRNSFLEALSSD 231
Query: 225 YVRYLEALGASEKLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMH 284
YV++L+A G + + +HA +NA++P VT L LQ G ++ G TE VF PG+G +
Sbjct: 232 YVQFLKAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQ 291
Query: 285 AALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
A + D+ ++ + I + N I+DI+YA+IDPRVR
Sbjct: 292 AIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
>emb|CAC05748.1| (AL391751) putative peptide transport system integral membrane
protein [Streptomyces coelicolor]
Length = 307
Score = 113 bits (281), Expect = 2e-24
Identities = 88/327 (26%), Positives = 159/327 (47%), Gaps = 31/327 (9%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
+Y+ R+++ F+ A L +L+ +M GDPI G + T + + +G
Sbjct: 3 RYVVRRLLQMIPVFIGATLLIFLMVNVM-GDPIA----GLCGDRECDPATAAQLRHE-FG 56
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWL 124
L++P++ Q+ + ++ GD G + V+ ++ A P I + AI+ ++G L
Sbjct: 57 LDQPVWQQYATYMGNVFTGDFG-TAFNGQPVTELMGTAFPVTIRLTIVAILFEIVVGIIL 115
Query: 125 GALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLN----IFPYQGAYSQNL 178
G L G + + D ++ + + S+P F ++L LGVK + A+ + +
Sbjct: 116 GVLTGLRRGRPVDTGVLLLTLVVISVPTFVTGLLLQLLLGVKWGWIDPAVSSEAAFGELI 175
Query: 179 VPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-K 237
VP +L +SL V + R I +DYVR A G +
Sbjct: 176 VPGL------------VLASVSLAYVTRLT-----RTSIAENRRSDYVRTAIAKGLPRHR 218
Query: 238 LLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGG 297
++T+H RN+++P VT + +G ++ GAI TE +FN GVG L L Q+ + G
Sbjct: 219 VITRHLLRNSLIPVVTFIGTDIGALMGGAIVTERIFNIHGVGYQLYQGILRQNTQTVVGF 278
Query: 298 FLMVIIAVLVANFIIDIVYALIDPRVR 324
++++ LVAN ++D++YA++DPR+R
Sbjct: 279 VTVLVLVFLVANLVVDLLYAVLDPRIR 305
>sp|P33591|NIKB_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NIKB
>gi|628767|pir||S39595 NikB protein - Escherichia coli
>gi|404846|emb|CAA51660.1| (X73143) NikB [Escherichia
coli]
Length = 314
Score = 112 bits (278), Expect = 5e-24
Identities = 87/324 (26%), Positives = 157/324 (47%), Gaps = 23/324 (7%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDP-IQIMINSALGLSPQERETLLKFYEDLY 63
+Y+ R+ ++ L A + +L+ RL GDP + + S L +P+ +L +
Sbjct: 3 RYVLRRFLLLIPMVLAASVIIFLIVRLGTGDPALDYLRLSNLPPTPE----MLASTRTML 58
Query: 64 GLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
GL++PLYVQ+ + L D G S + V + + + LP + + A+VL +
Sbjct: 59 GLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVP 118
Query: 124 LGALAGKNK-KYDKYLMPVFYFLA-SIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
LG A +++ + + + FL S+P FW A +LV V L P G
Sbjct: 119 LGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGW----- 173
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLTK 241
+H ILP +S+ + + A +R ++ +V + G ++K +
Sbjct: 174 ----------QHIILPAVSIAFMSLAINARLLRPSMLDVAGQRHVTWARLRGLNDKQTER 223
Query: 242 -HAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
H RNA LP +T + + +G ++ G + E +F +PGVG + A ++DY ++Q LM
Sbjct: 224 RHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLM 283
Query: 301 VIIAVLVANFIIDIVYALIDPRVR 324
+++ +V N I+D++ A +DPR+R
Sbjct: 284 MVVVFVVCNLIVDLLNAALDPRIR 307
>pir||S47696 nickel transport system permease protein nikB - Escherichia coli
>gi|466613|gb|AAB18452.1| (U00039) nikB [Escherichia
coli] >gi|1789888|gb|AAC76502.1| (AE000423) transport of
nickel, membrane protein [Escherichia coli K12]
Length = 314
Score = 112 bits (277), Expect = 7e-24
Identities = 87/324 (26%), Positives = 157/324 (47%), Gaps = 23/324 (7%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDP-IQIMINSALGLSPQERETLLKFYEDLY 63
+Y+ R+ ++ L A + +L+ RL GDP + + S L +P+ +L +
Sbjct: 3 RYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPE----MLASTRTML 58
Query: 64 GLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
GL++PLYVQ+ + L D G S + V + + + LP + + A+VL +
Sbjct: 59 GLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVP 118
Query: 124 LGALAGKNK-KYDKYLMPVFYFLA-SIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
LG A +++ + + + FL S+P FW A +LV V L P G
Sbjct: 119 LGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGW----- 173
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLTK 241
+H ILP +S+ + + A +R ++ +V + G ++K +
Sbjct: 174 ----------QHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTER 223
Query: 242 -HAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
H RNA LP +T + + +G ++ G + E +F +PGVG + A ++DY ++Q LM
Sbjct: 224 RHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLM 283
Query: 301 VIIAVLVANFIIDIVYALIDPRVR 324
+++ +V N I+D++ A +DPR+R
Sbjct: 284 MVVVFVVCNLIVDLLNAALDPRIR 307
>pir||F81699 peptide ABC transporter, permease protein TC0472 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190513|gb|AAF39320.1| (AE002315) peptide ABC
transporter, permease protein [Chlamydia muridarum]
Length = 314
Score = 111 bits (274), Expect = 2e-23
Identities = 88/327 (26%), Positives = 150/327 (44%), Gaps = 28/327 (8%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
Y+K++++ L+ VTL + + R +PGDP + L E +L YGL
Sbjct: 4 YIKKRLLFNLLSLWVVVTLTFFIIRTIPGDPFNDENGNVLS------EEILAILNKRYGL 57
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILYRD-SVSNIIKHALPYDIAILFPAIVLSWIIGNWL 124
+KPL+ Q++ + K LL D G S++Y+D +V II ALP + ++ L+ G L
Sbjct: 58 DKPLFTQYLIYLKCLLTLDFGESLIYKDRTVIGIITTALPSSAILGLESLCLALFGGITL 117
Query: 125 GALAGKNKK-YDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQ--GAYSQNLVPS 181
G LA K+ + + S+P F L Y +K ++ P G +S L+PS
Sbjct: 118 GILAAFYKRGCGRTIFFSSIIQISVPAFVIGAFLQYIFAIKYSLLPIACWGDFSHTLLPS 177
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLT 240
++ I P + + S + L+ DYV A G S K+L
Sbjct: 178 IALA---------IAPMAFITQLTYAS--------VSASLKKDYVLLAYAKGLSPLKVLI 220
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
KH A+ P ++ A + ++ G + E +F PG+G + + +DY + G +
Sbjct: 221 KHVLPYALFPVISYSAFLITTLMTGTFSIENLFCIPGLGKWFICSIKQRDYPMTLGLSVF 280
Query: 301 VIIAVLVANFIIDIVYALIDPRVRVSY 327
++ + + D++ A IDP++R SY
Sbjct: 281 YGAFFMLISLLCDLLQAWIDPQIRYSY 307
>gb|AAC18097.1| (AF058302) membrane protein of putative ABC transporter
[Streptomyces roseofulvus]
Length = 323
Score = 111 bits (274), Expect = 2e-23
Identities = 89/325 (27%), Positives = 151/325 (46%), Gaps = 24/325 (7%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALG-----LSPQERETLLKFY 59
+YL R++ L A TL++ + L+PGDP+Q M++ A G + P E + L
Sbjct: 4 RYLARRLGRVVLVVWAAYTLSFAVLYLLPGDPVQTMLSGAAGGDGAAVDPHEAQRL---- 59
Query: 60 EDLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWI 119
GL++PL VQ+ + LRGDLG SI V + ALP +++ PA+VLS +
Sbjct: 60 RHTLGLDRPLAVQYTSMLGHALRGDLGTSIRSGAPVRGQLAQALPDTLSVALPALVLSVL 119
Query: 120 IGNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQN 177
+ L L + + + + ++P FW ++L ++ + + P G
Sbjct: 120 VALCLALLGAWPRRRALRRAATALPSLGTAMPSFWLGLLLAQWVSFRWGLLPATGGGRSP 179
Query: 178 LVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEK 237
+ + LP + ++G G+R + E AD R A A +
Sbjct: 180 RATLLAALTLA-------LPIGCVLAQVLGR---GLRAALA-EPYADVARSRGAGRA--R 226
Query: 238 LLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGG 297
LL A RNA + + L + G ++AGA+ E VF G+G L M A QD ++QG
Sbjct: 227 LLLARALRNASVAALALLGVVCGQLLAGAVLVETVFARGGIGRLAMDAVTYQDLPVVQGV 286
Query: 298 FLMVIIAVLVANFIIDIVYALIDPR 322
++ + + N ++D++ L++PR
Sbjct: 287 VVLAALVAALVNLVVDLLLPLLEPR 311
>dbj|BAA97044.1| (AB015765) SapB [Vibrio alginolyticus]
Length = 320
Score = 110 bits (273), Expect = 2e-23
Identities = 74/242 (30%), Positives = 123/242 (50%), Gaps = 23/242 (9%)
Query: 104 PYDIAILFPAIVLSWIIGNWLGALAGKNKKYDKYLMPVFYFLA----SIPYFWFAMVLVY 159
P + + F A ++S +IG LG +AG K K+L F++ S P FW A++L+
Sbjct: 74 PATLELCFFAFLVSLLIGIPLGTVAGM--KQGKWLDTSISFMSMSGYSAPIFWVALLLIM 131
Query: 160 FLGVKLNIFPYQGAYSQ----NLVPSFSIT------------FIVDFLKHWILPFLSLFI 203
++ +FP G Y + V F+I + ++H +LP L L +
Sbjct: 132 VFSLEYQLFPVAGRYDLLYEIDHVTGFAIIDAFMAKGEYRAHALQSVIEHMVLPCLVLAL 191
Query: 204 VMIGSWAIGMRNMIIYELEADYVRYLEALGASEK-LLTKHAYRNAILPQVTGLALQLGLM 262
MR+ + + +Y+R G S + ++T+H RNAI P + + +QL M
Sbjct: 192 APTTQVVGLMRSSVAEVMSQNYIRAARIKGLSNREIVTQHVLRNAIPPIIPKVGVQLSSM 251
Query: 263 VAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPR 322
+ AI TE +FN+PG+G L+ A +QDY +Q G +++ VL AN + D++ A+I+P
Sbjct: 252 ITLAIITESIFNWPGIGRWLLDALANQDYASIQAGVMVLATLVLTANILSDLIGAMINPL 311
Query: 323 VR 324
VR
Sbjct: 312 VR 313
>pir||H83388 probable permease of ABC transporter PA2059 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948067|gb|AAG05447.1|AE004632_6 (AE004632) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 357
Score = 110 bits (273), Expect = 2e-23
Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 31/348 (8%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALG-----------------LS 48
YL R++ + T L + +N+ + + PG P+ I G L
Sbjct: 4 YLLRRLALILPTLLGILLINFAIVQAAPGGPVDQAIARLQGVDGGGPLGRGGEGGHGALE 63
Query: 49 PQER-ET-----LLKFYEDLYGLNKPLYVQFINFWKSLLRGDLGYSILYRDS-VSNIIKH 101
PQ ET L+ E YG +KP + S R D G S YRD+ V ++I
Sbjct: 64 PQRHGETGIDPQLVAALERQYGFDKPPLQRLWLMLSSYARLDFGESF-YRDARVIDLIAE 122
Query: 102 ALPYDIAILFPAIVLSWIIGNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVY 159
LP +++ A ++++++ LG +D + + ++P F FA+VL+
Sbjct: 123 KLPVSLSLGLWATLITYLVSIPLGVAKAVRHGSAFDLWSSALVVIGYAVPGFLFAIVLIV 182
Query: 160 FL--GVKLNIFPYQGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMI 217
G L+ FP +G S+ + D+L H LP SL + S + +N
Sbjct: 183 LFAGGSYLDWFPLRGLASEGAERLGPLARFADYLWHLALPVGSLVVGGFASLTLLTKNSF 242
Query: 218 IYELEADYVRYLEALGASEK-LLTKHAYRNAILPQVTGL-ALQLGLMVAGAIATEIVFNY 275
+ E+ YV A G SE+ +L H +RNA+L V GL A + + G++ E++F+
Sbjct: 243 LDEISRQYVATARAKGLSERRVLYGHVFRNAMLLVVAGLPAALVSVFFTGSLLIEVLFSL 302
Query: 276 PGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRV 323
G+G++ AAL +DY ++ G + + L+ D+ Y+L+DPR+
Sbjct: 303 DGLGLMGYEAALGRDYPVVFGSLFIFTLLGLLVKLAGDLAYSLVDPRI 350
>gi|10954943 Probable accD [Agrobacterium tumefaciens]
>gi|6498296|dbj|BAA87748.1| (AB016260) Probable accD
[Agrobacterium tumefaciens]
Length = 308
Score = 110 bits (272), Expect = 3e-23
Identities = 85/322 (26%), Positives = 151/322 (46%), Gaps = 29/322 (9%)
Query: 7 LKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLN 66
L R I++ LT VT +++ RL GDP + M+ +P+ L + +GL+
Sbjct: 9 LVRAIIVMMLT----VTFVFIILRL-GGDPARAMLGE--NATPEA----LAAFRTAWGLD 57
Query: 67 KPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGA 126
+ + QF+ + S LRGD G S V +I +P + + A VLS ++G G
Sbjct: 58 RSIPEQFLIYLASALRGDFGVSAADGREVFTVIAERIPKTLTLTISAFVLSILVGIPAGI 117
Query: 127 LAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSI 184
+A ++ DK +M S+P F + L++ V + P G+ +
Sbjct: 118 IAAVRRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSGSSTW-------- 169
Query: 185 TFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLTKHA 243
+H ILP + +V + A R+ +I LE Y+ A G + +++ +HA
Sbjct: 170 -------QHAILPVATFGLVNAAAIARFARSALIEVLEQPYIAAARADGIPKWEVVIRHA 222
Query: 244 YRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVII 303
NA +P VT L ++ G+ E VF +PG+G + A D ++Q L+
Sbjct: 223 LPNAAIPMVTMLGFVAAGLLGGSAIVETVFAWPGLGSGFVRAITLSDLNVVQAMILLFTA 282
Query: 304 AVLVANFIIDIVYALIDPRVRV 325
++ N I+D++YA+++P++R+
Sbjct: 283 FMVTINLIVDVLYAVLNPKIRL 304
>pir||C71545 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328605|gb|AAC67791.1| (AE001293)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 313
Score = 109 bits (271), Expect = 3e-23
Identities = 93/327 (28%), Positives = 152/327 (46%), Gaps = 28/327 (8%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
Y+KR+++ L+ VTL + + + +PGDP + L E LLK + YGL
Sbjct: 4 YIKRRLLFNLLSLWVVVTLTFFIIKTIPGDPFNDENGNILS---SETLALLK---NRYGL 57
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILYRD-SVSNIIKHALPYDIAILFPAIVLSWIIGNWL 124
+KPL+ Q++ + K LL D G S++Y+D +V +II ALP + ++ LS G L
Sbjct: 58 DKPLFTQYLIYLKCLLTLDFGESLIYKDRTVISIIAAALPSSAILGLESLCLSLFGGITL 117
Query: 125 GALAGKNKKY-DKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQ--GAYSQNLVPS 181
G LA KK + + S+P F L Y +K + P G +S L+PS
Sbjct: 118 GILAAFYKKSCGRTIFFSSVIQISVPAFVIGAFLQYVFAIKYSCLPIACWGNFSHTLLPS 177
Query: 182 FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLT 240
++ I P FI + ++ L+ DYV A G S K+L
Sbjct: 178 IALA---------ITPMA--FITQLTCASVSAN------LKKDYVLLAYAKGLSPFKVLI 220
Query: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
KH A+ P ++ A + ++ G + E +F PG+G + + +DY + G +
Sbjct: 221 KHILPYALFPVISYSAFLITTLMTGTFSIENLFCIPGLGKWFICSIKQRDYPITLGLSVF 280
Query: 301 VIIAVLVANFIIDIVYALIDPRVRVSY 327
++ + D++ A IDP++R SY
Sbjct: 281 YGAFFMLTSLCCDLLQAWIDPQIRYSY 307
>dbj|BAB13783.1| (AB038238) NikB [Vibrio parahaemolyticus]
Length = 320
Score = 109 bits (270), Expect = 5e-23
Identities = 85/318 (26%), Positives = 156/318 (48%), Gaps = 15/318 (4%)
Query: 11 IVIYFLTFLFAVTLNW---LLPRLMPGDPI-QIMINSALGLSPQERETLLKFYEDLYGLN 66
++I TFL V LL P DP+ + + + +S ++R+ + + G N
Sbjct: 6 LLILLRTFLLLVVTVMGIVLLVSHSPTDPVNEFLGGNVFSVSSEQRDNIAH----ILGTN 61
Query: 67 KPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGA 126
+ ++ + G+ GYS Y+ VS+++K + +L + L+ G LG
Sbjct: 62 MSELDRLTDWLVQMTHGEWGYSNYYQQPVSDVLKERSGNSLNLLIFSWSLTLCFGYALGL 121
Query: 127 LAG-KNKK-YDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSI 184
+AG KNK K L + L+ +P FW ++L+ +KL+ FP GA S ++V S
Sbjct: 122 VAGLKNKSTLGKCLYYGSWILSCLPSFWVGIILIAIFALKLHWFPVGGATSLSIVNS--- 178
Query: 185 TFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEK-LLTKHA 243
T+ + L+H ILP + L +V IG + + ++ L++DYV+Y + +K L+ ++
Sbjct: 179 TWQGN-LQHMILPIVCLVLVGIGPLILHTKEKVVSLLDSDYVKYAQMHQIPKKRLICQYL 237
Query: 244 YRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVII 303
+ +++P VT ++ A+ E VFNYPG+G +++ L++D LL L +
Sbjct: 238 IKGSLVPTVTLHFAAFAELLGNAVLIESVFNYPGLGNAFVYSGLTKDSHLLLALSLCTTL 297
Query: 304 AVLVANFIIDIVYALIDP 321
+ N +I+ + P
Sbjct: 298 MIATGNAFANIIQRISQP 315
>pir||F82377 ABC transporter, permease protein VCA1099 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658546|gb|AAF96991.1| (AE004435) ABC transporter,
permease protein [Vibrio cholerae]
Length = 318
Score = 109 bits (269), Expect = 6e-23
Identities = 81/307 (26%), Positives = 143/307 (46%), Gaps = 19/307 (6%)
Query: 23 TLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKPLYVQFINFWKSLLR 82
TL ++L R +PGD + G + L +L GL++ + ++ + LL
Sbjct: 21 TLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL-GLDRSAFELYLQWLWDLLH 79
Query: 83 GDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAGK--NKKYDKYLMP 140
+LG+S++ + V + I H L + + + A +LS I +G GK ++ D +
Sbjct: 80 LNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPIGVYCGKRTDRWADNLALL 139
Query: 141 VFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSITFIVDFLKHWILPFLS 200
+ + P F + LV ++LN P G K ILP L+
Sbjct: 140 TSIMIKAQPVFLIGLGLVILFALQLNWLPVAG---------------FGHPKFLILPALA 184
Query: 201 LFIVMIGSWAIGMRNMIIYELEADYVRYLEALGAS-EKLLTKHAYRNAILPQVTGLALQL 259
L + M + +RN L++ Y + G + E+ T+HA RN LP + + +Q
Sbjct: 185 LALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVMAFVGIQA 244
Query: 260 GLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALI 319
+V G + E +F++PGVG L HA +D ++QG L++ + + N ++D+V +
Sbjct: 245 VSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLVDLVQYAL 304
Query: 320 DPRVRVS 326
DPR+R+S
Sbjct: 305 DPRLRLS 311
>pir||T03433 probable transport protein accD - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153180|gb|AAC17200.1| (AF010180) AccD
[Agrobacterium tumefaciens]
Length = 306
Score = 108 bits (268), Expect = 8e-23
Identities = 85/322 (26%), Positives = 151/322 (46%), Gaps = 31/322 (9%)
Query: 7 LKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLN 66
L R I++ LT VT +++ RL GDP + M+ +P+ L + +GL+
Sbjct: 9 LVRAIIVMMLT----VTFVFIILRL-GGDPARAMLGE--NATPEA----LAAFRTAWGLD 57
Query: 67 KPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGA 126
+ + QF+ + S LRGD G S V +I +P + + A VLS ++G G
Sbjct: 58 RSIPEQFLIYLASALRGDFGVSAADGREVFTVISERIPKTLTLTISAFVLSILVGIPAGI 117
Query: 127 LAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSI 184
+A ++ DK +M S+P F + L++ V + P G+ +
Sbjct: 118 IAAVRRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSGSSTW-------- 169
Query: 185 TFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLTKHA 243
+H ILP + +V + A+ R +I LE Y+ A G + +++ +HA
Sbjct: 170 -------QHAILPVATFGLVNAAAIALPFR--VIEVLEQPYIAAARADGIPKWEVVIRHA 220
Query: 244 YRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVII 303
NA +P VT L ++ G+ E VF +PG+G + A D ++Q L+
Sbjct: 221 LPNAAIPMVTMLGFVAAGLLGGSAIVETVFAWPGLGSGFVRAITLSDLNVVQAMILLFTA 280
Query: 304 AVLVANFIIDIVYALIDPRVRV 325
++ N I+D++YA+++P++R+
Sbjct: 281 FMVTINLIVDVLYAVLNPKIRL 302
>pir||S77118 oligopeptide transport system permease protein appB - Synechocystis
sp. (strain PCC 6803) >gi|1652757|dbj|BAA17676.1|
(D90908) oligopeptide transport system permease protein
[Synechocystis sp.]
Length = 326
Score = 108 bits (267), Expect = 1e-22
Identities = 81/320 (25%), Positives = 157/320 (48%), Gaps = 13/320 (4%)
Query: 9 RKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKP 68
+++ I +T L + + L L PG+P+ + + +S + R+ L + GL++
Sbjct: 15 KRLAIAVITLLGISLVIFSLLALAPGNPLGELATNP-SISQEVRDNLRRSL----GLDQA 69
Query: 69 LYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALA 128
L ++++ + SLL+GDLGYS R V ++I LP + ++ A ++S I LG A
Sbjct: 70 LPIRYLKWLWSLLQGDLGYSFTSRSPVIDLIGQRLPTTLWLMGTAYLISLAIAIPLGVTA 129
Query: 129 G--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSITF 186
+ + ++ + + S+P F ++ + V+L P+ Y L S+
Sbjct: 130 ALYRGRWWEPLISGISLMGFSLPTFLTGLLFILIFSVQLRWLPF--IYDSTLTVD-SMAS 186
Query: 187 IVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVR--YLEALGASEKLLTKHAY 244
+ ++ ++P L +R+ + EL +Y+R Y + LG + +L H
Sbjct: 187 LGTQIRQLLMPVGVLVFYQSAVILRFVRSAALEELPQNYIRTAYAKGLG-TWGMLKNHLL 245
Query: 245 RNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIA 304
+NA LP +T +AL + + GA+ TE VF PG+G LL+ + D ++ + +
Sbjct: 246 KNASLPLITLIALDVPTIFTGALVTEQVFRVPGIGALLIESIYRSDTPVVMAVTFLYAVL 305
Query: 305 VLVANFIIDIVYALIDPRVR 324
++ + + D++Y L+DPR+R
Sbjct: 306 IVFFSSLADLIYQLVDPRIR 325
>pir||D75573 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6460715|gb|AAF12420.1|AE001863_45
(AE001863) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 328
Score = 108 bits (267), Expect = 1e-22
Identities = 90/330 (27%), Positives = 160/330 (48%), Gaps = 19/330 (5%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
Y R+I+ T L L +L+ +L PG I+ L +ET+ L GL
Sbjct: 9 YTLRRILGMIPTLLVISVLCFLVIKLQPGS----FIDQYLEDPRFSKETVANITRQL-GL 63
Query: 66 NKPLYVQFINFWKSLL-RGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWL 124
++P + Q++N+ ++ R D GYS V++II L + + I + L+W+I L
Sbjct: 64 DQPAWKQYLNWITGVVTRLDFGYSFASGAPVTSIIGERLGWTVFIAALTLALTWLIAVPL 123
Query: 125 GALAGKNKKYDKYLMP------VFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNL 178
G +++Y +P + Y +IP F A++LV + +L G + ++
Sbjct: 124 GIYTA----FNRYGIPAQIANFLGYVGLAIPDFLAALLLVVLVR-QLGGTNVGGLFRPDM 178
Query: 179 VPS-FSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE- 236
+ + +S ++D L H +P L++ + + MR + L DY+R +A G +
Sbjct: 179 IDAPWSFAKVLDLLAHLWIPVLAVGLEGVAGLMRQMRASTLDVLSQDYIRTAKAKGLPQG 238
Query: 237 KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQG 296
+++ KHA RNAI P ++ L L +++G I IV + P +G LL + L++D +
Sbjct: 239 RVIWKHAVRNAINPLISLAGLSLPTLISGTIIISIVMSLPTIGPLLYDSLLNKDQYTAMT 298
Query: 297 GFLMVIIAVLVANFIIDIVYALIDPRVRVS 326
++ +L+ N + D+ A DPRVR S
Sbjct: 299 LLMLSAFLLLIGNLLSDLALAWADPRVRYS 328
>pir||C82170 peptide ABC transporter, permease protein VC1681 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656197|gb|AAF94831.1| (AE004246) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 320
Score = 106 bits (262), Expect = 4e-22
Identities = 89/340 (26%), Positives = 149/340 (43%), Gaps = 51/340 (15%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGL 65
Y RK ++ +T L + + L R P P + +G L++ E +GL
Sbjct: 4 YTVRKFNLFIITLLILTMVGYSLARFDPHSPWTL-----IGFWQGWSSYLVQLMEFNFGL 58
Query: 66 NKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLG 125
NK G IL+ V P I + A +LS ++G +G
Sbjct: 59 NKN-----------------GVPILHELLV------VFPATIELCTIAFILSLLVGIPIG 95
Query: 126 ALAGKNKKYDKYLMPVFYFLA----SIPYFWFAMVLVYFLGVKLNIFPYQGAYSQ----N 177
LAG + K+L + F++ S P FW A++++ + +FP G Y +
Sbjct: 96 TLAGMRQ--GKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQID 153
Query: 178 LVPSFSIT------------FIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADY 225
V F++ + ++H LP L L + MR + + +Y
Sbjct: 154 HVTGFALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNY 213
Query: 226 VRYLEALGASE-KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMH 284
+R + G S +++T+H RNAI P + +QL M+ AI TE +FN+PG+G L+
Sbjct: 214 IRAAKIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLD 273
Query: 285 AALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
A ++D+ +Q G ++V VL AN + D++ A +P VR
Sbjct: 274 ALANRDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVR 313
>emb|CAA92398.1| (Z68203) OppB homologue [Rhizobium sp.]
Length = 207
Score = 102 bits (252), Expect = 6e-21
Identities = 66/213 (30%), Positives = 106/213 (48%), Gaps = 10/213 (4%)
Query: 115 VLSWIIGNWLGALAGKNKK--YDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQG 172
+LS +G G LA D+ L S+P F +L+YF ++ P QG
Sbjct: 1 ILSVTVGVSFGVLAAWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRWLPVQG 60
Query: 173 AYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEAL 232
S N + + H ILP ++L + I A R ++ L DY+R A
Sbjct: 61 YTSIN-------QGVAPWFLHLILPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAK 113
Query: 233 GASE-KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDY 291
GAS +L HA +NA +P +T + + M+ G + TE VFN PG+G L++ A ++DY
Sbjct: 114 GASPFAMLFHHALKNAGVPILTVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDY 173
Query: 292 FLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
++Q +++ ++ N ++D+ Y LIDPR+R
Sbjct: 174 PIIQTVLVLISGLYVLINLLVDLAYTLIDPRIR 206
>sp|Q10611|YC83_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN RV1283C
>gi|7442425|pir||G70771 probable peptidetransport system
permease - Mycobacterium tuberculosis (strain H37RV)
>gi|1322407|emb|CAA97749.1| (Z73419) oppB [Mycobacterium
tuberculosis]
Length = 325
Score = 102 bits (251), Expect = 8e-21
Identities = 84/331 (25%), Positives = 153/331 (45%), Gaps = 17/331 (5%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYG 64
+YL R+++ Y + A L + L L + S + SP+ + ++ G
Sbjct: 3 RYLARRLLNYLVLLALASFLTYCLTSLAFSP-----LESLMQRSPRPPQAVIDAKAHDLG 57
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWL 124
L++P+ ++ N+ +RGD G +I + V + + + +L V + G +
Sbjct: 58 LDRPILARYANWVSHAVRGDFGTTITGQP-VGTELGRRIGVSLRLLVVGSVFGTVAGVVI 116
Query: 125 GALAGKNKKY---DKYLMPVFYFLASIPYFWFAMVLVYFL-----GVKLNIFPYQGAYSQ 176
GA G ++Y D+ + + + S P F A +L+ V + +F Y G S
Sbjct: 117 GAW-GAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSP 175
Query: 177 NLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE 236
+ + D L+H ILP L+L + ++ RN ++ L D++R A G +
Sbjct: 176 GVAGGVWDR-LGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTR 234
Query: 237 K-LLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQ 295
+ L KH R A++P T A + +V GA+ E +F + G+G ++ +QD ++
Sbjct: 235 RRALLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVA 294
Query: 296 GGFLMVIIAVLVANFIIDIVYALIDPRVRVS 326
+ VL+A + D++YA +DPRVRVS
Sbjct: 295 AITVFSGAVVLLAGLLSDVIYAALDPRVRVS 325
>gi|10955049 ophB [Agrobacterium tumefaciens] >gi|7442423|pir||S77573
oligopeptide transport protein homolog ophB -
Agrobacterium tumefaciens plasmid pTiR10
>gi|1215732|gb|AAC44509.1| (AF242881) ophB
[Agrobacterium tumefaciens]
Length = 334
Score = 94.8 bits (232), Expect = 1e-18
Identities = 72/327 (22%), Positives = 150/327 (45%), Gaps = 16/327 (4%)
Query: 2 GFKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYED 61
G +L +++ L +L ++ L+PGD ++ + L +
Sbjct: 19 GLALHLLKRVAAGLGLLLVLSSLIFIGSTLLPGDAATAILGRSA------TPAALAELRE 72
Query: 62 LYGLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIG 121
GLN+PL V+++++ + + GDLG S++ SV++ I L + + +++ +
Sbjct: 73 RLGLNEPLIVRYMSWLNAFVHGDLGSSLINGRSVADSIGARLGNTLFLAASVALVAVPLA 132
Query: 122 NWLGALAGK--NKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLV 179
+LG L+ + + D+ + V ++P F+ +L+Y L V L F
Sbjct: 133 VFLGVLSVRYRGRVLDRTIALVTRTFVALPEFFIGYLLIYILSVSLGWFASSSTV----- 187
Query: 180 PSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KL 238
F+ D + LP L+L V+ G +R ++ +E ++ G S +
Sbjct: 188 --FARMGFADRVVAIALPCLTLVFVVTGHITTMVRASVLDVMERPFIEMAALKGVSHGAV 245
Query: 239 LTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGF 298
+ +HA NA+ P + + + L +VAG + E++F YPG+G ++ + +++ ++Q
Sbjct: 246 VWRHALPNALSPIINVVLVNLAYLVAGVVVVEVIFVYPGIGQYMVDSVVNRHVPVVQATA 305
Query: 299 LMVIIAVLVANFIIDIVYALIDPRVRV 325
L+ + N D++ L +PR+R+
Sbjct: 306 LLFAGVYIGLNLCADVLSVLANPRLRL 332
>pir||E81253 probable peptide ABC-transport system permease protein Cj1583c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6969000|emb|CAB73571.1| (AL139079) putative peptide
ABC-transport system permease protein [Campylobacter
jejuni]
Length = 314
Score = 94.8 bits (232), Expect = 1e-18
Identities = 87/323 (26%), Positives = 146/323 (44%), Gaps = 20/323 (6%)
Query: 7 LKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLN 66
LKR + F+ F F+ L ++L G I A G++ Q +E + + ++L GL+
Sbjct: 2 LKRLVFSIFIAF-FSTFLCFVLLHFSKGS-----IAYANGVNSQSKEFVQRIEQNL-GLD 54
Query: 67 KPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGA 126
KPL Q+ + L+GDLG S L +SV +IK + + F A++L +++ +L
Sbjct: 55 KPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSALMLLFLLSVFLAL 114
Query: 127 LA--GKNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSI 184
L K DK + + + ++P F A++ V G+ I P G S I
Sbjct: 115 LGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPVMG--------SSDI 166
Query: 185 TFIVDF---LKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLTK 241
F DF L+H ILP L L + + + RN I +++ L A EK +
Sbjct: 167 GFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARALREKDIYF 226
Query: 242 HAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMV 301
+ ++ P V + G E VF Y G+G LL + + +DY ++
Sbjct: 227 LVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYKGLGSLLFKSIIFKDYPIVLALIFFS 286
Query: 302 IIAVLVANFIIDIVYALIDPRVR 324
++ F+ DIV +++PR+R
Sbjct: 287 VLLAAFFTFLSDIVARILNPRLR 309
>pir||A72537 probable oligopeptide transport permease protein APE1582 -
Aeropyrum pernix (strain K1) >gi|5105269|dbj|BAA80582.1|
(AP000062) 363aa long hypothetical oligopeptide
transport permease protein [Aeropyrum pernix]
Length = 363
Score = 93.6 bits (229), Expect = 3e-18
Identities = 84/292 (28%), Positives = 139/292 (46%), Gaps = 25/292 (8%)
Query: 57 KFYEDL---YGLNKPLYVQFINFW-----KSLLRGDLG---YSILYRDSVSNIIKHALPY 105
+ YE+L YGL +VQ + W KS + D G YS + +V I
Sbjct: 69 QLYENLMERYGLTGN-FVQDVATWTVKLIKSNITFDFGVTQYSYIGGTNVIGDILLLAMK 127
Query: 106 DIAILF-PAIVLSWIIGNWLGALAGKNKK--YDKYLMPVFYFLASIPYFWFAMVLVYFLG 162
+ AILF A ++++ IG LG + +D+ L S P +W A++++
Sbjct: 128 NTAILFLTATLITFAIGIILGFQMARKPGSIFDRGLSVFGMISWSFPTWWVAIIMILIFS 187
Query: 163 VKLNIFPYQGAYS----QNLVPSFSI-TFIVDFLKHWI----LPFLSLFIVMIGSWAIGM 213
L +FP Q Y L P + IV+ K W+ +P +++ +V G + +
Sbjct: 188 FYLRLFPAQAQYVYFELSKLPPDLPLFEKIVEQAKIWLKYMTMPVMTIVLVSFGGASYLI 247
Query: 214 RNMIIYELEADYVRYLEALGASEK-LLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIV 272
RN+++ L+ D+V A G E+ ++ H R + P VT LAL + GAI TE V
Sbjct: 248 RNIVLGILQEDFVTAARARGLPERRVIYGHVLRTSSPPIVTYLALSIVGAFGGAIITEAV 307
Query: 273 FNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
F +PG+G++ A D +L ++ + ++ I+D +Y+L+DPRVR
Sbjct: 308 FGWPGMGLVYWIAIQQSDAKVLVASTWVLTVFFILTILILDFIYSLLDPRVR 359
>gb|AAG09258.1| (AF176664) EppB [EDTA-degrading bacterium BNC1]
Length = 315
Score = 93.2 bits (228), Expect = 4e-18
Identities = 74/271 (27%), Positives = 135/271 (49%), Gaps = 16/271 (5%)
Query: 65 LNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIG--- 121
L++PL ++ + L GD G SI D + ++K L + +L IVL++++
Sbjct: 47 LDQPLLDRYWMWLSGLFVGDFGPSIHNIDIGAELVKR-LGVSLRLLALGIVLAFLMAVAA 105
Query: 122 NWLGALAGKNKKYDKYLMPVFYFLASIPYFWFAMVLVYF-------LGVKLNIFPYQGAY 174
+ +GA+ + D + V + S+P FW A+ L LG +L GA
Sbjct: 106 SVIGAVL-QFSWADHIISFVAVAMISMPVFWLALQLKRLAISINQELGFRLLYTSGDGAG 164
Query: 175 SQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGA 234
P + ++ L LP ++L + G W+ R +I L ++YV+ A G
Sbjct: 165 MTASTPWDRVLLLIGVLA---LPTIALSMQACGKWSRYGRVALIDALNSEYVKLARAKGL 221
Query: 235 SE-KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFL 293
SE +++ H R ++ P +T +A +++ ++ TE VF + G+G LL+ + D ++
Sbjct: 222 SETRVVLAHGLRTSLAPMLTVVAAGGAVILGESVVTETVFQWRGMGDLLVTGIQNNDVYV 281
Query: 294 LQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
+ G L+ + ++V N I DI+YA++DPR+R
Sbjct: 282 VLGWLLVAGLIIMVFNLIADILYAVLDPRIR 312
>emb|CAA61523.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 500
Score = 92.1 bits (225), Expect = 9e-18
Identities = 66/247 (26%), Positives = 127/247 (50%), Gaps = 23/247 (9%)
Query: 91 YRDSVSNIIKHALPYDIAIL-FPAIVLSWIIGNWLGALAG--KNKKYDKYLMPVFYFLAS 147
Y +++N + ++ ++ ++ F ++ S I+G LG KN +D++ F+ +
Sbjct: 268 YTKTINNYVDPSMIHNSFVIGFFGVMFSHIVGLPLGLFMARFKNTYFDRFSTATMTFMLA 327
Query: 148 IPYFWFAMVLVYFLGVKLNI---FPYQGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIV 204
+P + +V FLG + + FP GA K +ILP L L I+
Sbjct: 328 LPSI-AVIYVVRFLGGMVGLPDSFPMLGASDP---------------KSYILPALILGIL 371
Query: 205 MIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLTK-HAYRNAILPQVTGLALQLGLMV 263
I + I R ++ +D+VR+ + G SE + + H ++NA++P V+G+ + L +
Sbjct: 372 NIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAI 431
Query: 264 AGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRV 323
GA TE VF +PG+G +L+ + S + ++ G + + +V+ + DIV L+DPR+
Sbjct: 432 GGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRI 491
Query: 324 RVSYEEG 330
++S ++G
Sbjct: 492 KLSTKKG 498
>gb|AAG20451.1| (AE005117) dipeptide ABC transporter permease; DppB1 [Halobacterium
sp. NRC-1]
Length = 363
Score = 91.3 bits (223), Expect = 1e-17
Identities = 89/360 (24%), Positives = 169/360 (46%), Gaps = 45/360 (12%)
Query: 6 YLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPI-QIMINSALGLSPQERETLLKF-YEDLY 63
Y+ +++++ LF +TL +L+ L P DP+ I+ A + + E L Y +
Sbjct: 6 YIAKRLLLGVPVLLFGLTLTFLILYLGPIDPVLAILGKDATPTAARNLEISLGIRYPN-- 63
Query: 64 GLNKPLYVQFINFWKSLLRGDLGYS-ILYRDS-VSNIIKHALPYDIAILFPAIVLSWIIG 121
G PL+VQ+ NF +++ D G S + RD V+ +I LP I + F +++++ +G
Sbjct: 64 GSLVPLWVQYKNFLVNMVTFDFGTSWAIARDQPVAAMIVGRLPATIWLGFWSVLVALFVG 123
Query: 122 NWLGALAGKNKKYDKYLMPVFYFLA--SIPYFWFAMVLVYFLG------------VKLNI 167
+G AG N F + ++P FW A++L L +K ++
Sbjct: 124 IPVGLYAGLNSNSWSDYAASFGGIVWRAMPNFWLAVMLSGLLTAGGVLDGYGDFLIKTDV 183
Query: 168 FPYQGAYSQNL--VPSFSITFIVDFLK-------------HWILPFLSLFIVMIGSWAIG 212
A + F+ +++F WILP +++GS ++G
Sbjct: 184 VGTSNALQHLFSGIDPFAGVPVLEFFWIPVPNLGPMAEAFKWILPAA----LVLGSSSMG 239
Query: 213 M-----RNMIIYELEADYVRYLEALGAS-EKLLTKHAYRNAILPQVTGLALQLGLMVAGA 266
R ++ L ++YV +A G S +++ KH RNA++P + + + L++ G+
Sbjct: 240 NEVRIGRTAVLESLRSEYVDTAKAKGVSPRRIIVKHIGRNAVIPLLPVIMGEFYLLIGGS 299
Query: 267 IATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVRVS 326
+ E VF+ G+G L + AA + D ++ + I+ ++ N + D++Y IDPR+ +S
Sbjct: 300 VLVEKVFSINGIGNLFIRAAFNSDIPVMMSLVFIFILMQILFNLLQDVLYTYIDPRITLS 359
>sp|P75554|OPPB_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|2146483|pir||S73942 oligopeptide transport system
permease protein oppB - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674318|gb|AAB96264.1| (AE000058)
oligopeptide transport system permease protein OppB
[Mycoplasma pneumoniae]
Length = 389
Score = 90.5 bits (221), Expect = 3e-17
Identities = 67/278 (24%), Positives = 128/278 (45%), Gaps = 19/278 (6%)
Query: 61 DLYGLNKPLYVQFINFWKSLLRGDLG-YSILYRDSVSNIIKHALPYDIAILFPAIVLSWI 119
D +G N PL V++ +W++L G LG Y ++ I+ +P + + +++S+
Sbjct: 36 DAFGFNDPLIVRYGRYWQTLFSGSLGTYYSSPNQTIDQIVFGRVPNTLYV----VLISFF 91
Query: 120 IGNWLGALAG------KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGA 173
IG+ LG + G + K D + + SIP F + L+ G +F
Sbjct: 92 IGSLLGIIFGMISGLFRGKLIDAVINVLVVLFVSIPSFVVGLGLLKAAG----LFRLPPR 147
Query: 174 YSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALG 233
+ +F+ +FL I+P LSL ++ +RN ++ + DY++ + G
Sbjct: 148 FINFDDANFNFG---NFLLASIIPILSLVFYTSAAFTYRVRNEVVEVMNQDYIKTARSKG 204
Query: 234 ASE-KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYF 292
S + H +RN+I+P V + +G E +F GV +L+ + S +
Sbjct: 205 LSTFAVALYHIFRNSIIPSVPLFVFGISGAFSGGFIIESLFGVQGVSRILIDSVQSNETN 264
Query: 293 LLQGGFLMVIIAVLVANFIIDIVYALIDPRVRVSYEEG 330
L+ + + L+A+ I+++Y L+DPR+R++ G
Sbjct: 265 LVMFNIMFIQGIPLLASVFIELIYVLVDPRIRIASAGG 302
>pir||T45279 oligopeptide transport membrane protein bldKC [imported] -
Streptomyces coelicolor >gi|1532203|gb|AAB09556.1|
(U68036) BldKC [Streptomyces coelicolor A3(2)]
Length = 323
Score = 86.6 bits (211), Expect = 4e-16
Identities = 67/281 (23%), Positives = 129/281 (45%), Gaps = 30/281 (10%)
Query: 64 GLNKPLYVQFINFWKSLLRGD-----------LGYSILYRDSVSNIIKHALPYDIAILFP 112
G ++P+ VQ+ +F + G G S +V + I P +++
Sbjct: 55 GFDQPVTVQYWHFLAGIFTGREFAVGHCDAPCFGVSFANNQNVWDTILDRFPLTVSLTVG 114
Query: 113 AIVLSWIIGNWLGALAGKNKK--YDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPY 170
++++ I+G G LA KN+ DK ++S+ F +VL+ +
Sbjct: 115 SLIVFLIVGLGAGLLAAKNRGTWIDKVFSSGSLVVSSLQIFLGPLVLLALV--------- 165
Query: 171 QGAYSQNLVPSFSITFIVDFLKHW----ILPFLSLFIVMIGSWAIGMRNMIIYELEADYV 226
YS + I + W +LP++ + + ++A R+ +I +L+ ++V
Sbjct: 166 ---YSTGWLQKPKYVPISEDAAGWFAGLLLPWIVMATIFTANYARMSRSSMIEQLQEEHV 222
Query: 227 RYLEALGASEKL-LTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHA 285
R A G S ++A+R +++P VT L + L ++ G + TE+ F G+G
Sbjct: 223 RAARAKGMSSNYTFFRYAWRGSLVPIVTILGIDLSALMGGGMVTEMTFGLAGIGRSRWSR 282
Query: 286 ALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVRVS 326
++++D +L G L+ ++V N I+D +YA+IDP R+S
Sbjct: 283 SINKDLPMLMGVMLVSAALIIVFNLIVDAMYAVIDPASRLS 323
>pir||C82876 oligopeptide transport system permease protein UU562 [imported] -
Ureaplasma urealyticum
>gi|6899568|gb|AAF30975.1|AE002154_11 (AE002154)
oligopeptide transport system permease protein
[Ureaplasma urealyticum]
Length = 377
Score = 84.7 bits (206), Expect = 1e-15
Identities = 74/322 (22%), Positives = 150/322 (45%), Gaps = 35/322 (10%)
Query: 11 IVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGL---SPQERETLLKFYEDLYGLNK 67
I +FL +T+ + L +PG+ SAL + SP+ ++ +L YGL++
Sbjct: 79 IAEFFLLAWIVITITFFLINSVPGE-------SALTIGITSPEAKKAILA----QYGLDR 127
Query: 68 PLYVQFINFWKSLLRGDLGYSILYRDSV--SNIIKHALPYDIAILFPAIVLSWIIGNWLG 125
P+ V+++N+ ++ RG+ G S R V ++ I A+ +++L+ +IG LG
Sbjct: 128 PIGVRYVNYLANIFRGEFGVSTSIRPGVEINSFIWSRYLVSFAVGIFSVLLTLVIGIPLG 187
Query: 126 ALAGKNKK--YDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPSFS 183
G+ D + ++++P F ++L+ +G ++ +
Sbjct: 188 IFVGRKPGGILDSVSTVIISVISAVPSLVFGLILL-LIGKEVGL---------------P 231
Query: 184 ITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGAS-EKLLTKH 242
TF ++ +ILP L+L + I + ++ + EL + + ++ GA+ + + H
Sbjct: 232 FTFDINNFVTYILPGLALSLGSIIVYVQYIKVEMNRELNSMHAKFAYLKGATVNRFVWLH 291
Query: 243 AYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVI 302
A + ++ P T + GA+ E +F PG G L A +S+DY ++ ++
Sbjct: 292 ALKPSLFPIATFFPFVILGSFVGALFIEQIFQIPGSGSLFFEAIISKDYNVILLLVIIYS 351
Query: 303 IAVLVANFIIDIVYALIDPRVR 324
+ ++ I D +Y +IDPR+R
Sbjct: 352 LITIIGYTIRDALYQIIDPRIR 373
>pir||D71510 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328914|gb|AAC68079.1| (AE001321)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 492
Score = 81.9 bits (199), Expect = 1e-14
Identities = 82/311 (26%), Positives = 137/311 (43%), Gaps = 15/311 (4%)
Query: 28 LPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLYGLNKPLYVQFINFWKSLLRGDLGY 87
L RL+ D I++ + + QE DL+ + L +F + ++R D G
Sbjct: 179 LVRLLNEDNIEVKVAALQEWVEQEGGRGQLMRRDLWRIFF-LETRFAKYLSRIVRLDFGT 237
Query: 88 --SILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAGKNKKY--DKYLMPVFY 143
+ ++ VS +IK I L P IV+ +I+ G + NK + D L +F
Sbjct: 238 LRNDCHKTVVSEVIKRLGSSLILSLLPMIVV-FILCQVFGMIMAVNKNHWIDHLLNFLFL 296
Query: 144 FLASIPYF----WFAMVLVYFLGVKLNIF--PYQGAYSQNLVPSFSITF--IVDFLKHWI 195
L SIP F W V V PY G S + +F + D + H
Sbjct: 297 ILFSIPVFVAVPWIIDNFVLNKTVPFTSISMPYSGLCSSPEIFKEMTSFEKLTDIVLHSF 356
Query: 196 LPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLTKHAYRNAILPQVTG 254
LPF ++ + + R + + L D++ L A G S+ +L +H +N+ +T
Sbjct: 357 LPFCAVSYGAFAAQSRLSRAVFLEVLGEDHISALRARGISQYDILVRHVGKNSAATLITS 416
Query: 255 LALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDI 314
LA L ++ GA+ E +F+ G G A L++D+ ++ +M + L+ I DI
Sbjct: 417 LASSLSALLGGALVVETLFDIDGFGKFFYQAILNRDHNVVMFSVIMGSVISLIGYLIGDI 476
Query: 315 VYALIDPRVRV 325
Y L+DPRV++
Sbjct: 477 CYVLLDPRVQL 487
>sp|P47323|OPPB_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|1361737|pir||E64208 oligopeptide transport system
permease protein oppB homolog - Mycoplasma genitalium
>gi|1045754|gb|AAC71295.1| (U39688) oligopeptide ABC
transporter, permease protein (oppB) [Mycoplasma
genitalium]
Length = 407
Score = 81.5 bits (198), Expect = 1e-14
Identities = 60/272 (22%), Positives = 122/272 (44%), Gaps = 16/272 (5%)
Query: 63 YGLNKPLYVQFINFWKSLLRGDLGYSILY----RDSVSNIIKHALPYDIAILFPAIVLSW 118
+G N P+ V++ +W L +Y ++ I+ +P + ++ + ++
Sbjct: 53 FGFNDPIIVRYFRYWAKLFSFQADALGIYYANPNQTIGEIVFARVPNTLYVVLISFLIGS 112
Query: 119 IIGNWLGALAGKN--KKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQ 176
++G +LG ++G N K D + + SIP F + L+ G LN+ P
Sbjct: 113 LLGIFLGMVSGLNRGKFLDAAINVLVVLFVSIPSFVVGLGLLKLAGF-LNLPP------- 164
Query: 177 NLVPSFSITFIVD-FLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGAS 235
+ F D FL I+P LSL ++ +RN ++ + DY++ ++ G
Sbjct: 165 RFINFDDAFFSFDRFLLASIIPILSLVFYSSAAFTYRIRNEVVEVMNQDYIKTAKSKGLG 224
Query: 236 EKLLTK-HAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLL 294
+ + H +RN+I+P + + +G E +F GV +L+ + + ++
Sbjct: 225 MFAVARYHIFRNSIIPSIPLFVFGISGAFSGGFIIESLFGVQGVSRILIDSVQVNETNMV 284
Query: 295 QGGFLMVIIAVLVANFIIDIVYALIDPRVRVS 326
L + L+A+ I+ +Y L+DPR+R++
Sbjct: 285 MFNILFIQGIPLLASVFIEFIYVLVDPRIRIA 316
>pir||G81668 peptide ABC transporter, permease protein, probable TC0764
[imported] - Chlamydia muridarum (strain Nigg)
>gi|7190789|gb|AAF39567.1| (AE002344) peptide ABC
transporter, permease protein, putative [Chlamydia
muridarum]
Length = 492
Score = 81.5 bits (198), Expect = 1e-14
Identities = 82/313 (26%), Positives = 142/313 (45%), Gaps = 19/313 (6%)
Query: 28 LPRLMPGDPIQIMINSALGLSPQE--RETLLKFYEDLYGLNKPLYVQFINFWKSLLRGDL 85
L RL+ D I++ + +E R+ L++ DL+ + L +F + ++R D
Sbjct: 179 LVRLLNEDDIEVKVAGLRAWVEKEGGRDKLMR--GDLWRIFF-LETRFAKYLSRIIRLDF 235
Query: 86 GY--SILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGAL--AGKNKKYDKYLMPV 141
G + ++ VS +IK + L P IV+ +++ G + KN+ D L +
Sbjct: 236 GTLRNDCHKTVVSEVIKRLGSSLVLSLLPMIVV-FVLCQVFGMIMAVNKNRWIDHLLNFL 294
Query: 142 FYFLASIPYF----WFAMVLVYFLGVKLNIF--PYQGAYSQNLV--PSFSITFIVDFLKH 193
F L SIP F W V V PY G S V S+ ++D + H
Sbjct: 295 FLILFSIPVFVAVPWIIDNFVLNKTVPFTSISMPYSGLCSSPEVFKDMTSLEKLIDIVLH 354
Query: 194 WILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE-KLLTKHAYRNAILPQV 252
LPF ++ + + R + + L D++ L A G S+ +L +H +N+ +
Sbjct: 355 SFLPFCAVSYGAFAAQSRLSRAVFLEVLGEDHIPALRARGISQYDILIRHVGKNSAATLI 414
Query: 253 TGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFII 312
T LA L ++ GA+ E +F+ G G A L++D+ ++ +M + L+ I
Sbjct: 415 TSLASSLSALLGGALVVETLFDIDGFGKFFYQAILNRDHNVVMFSVIMGSVISLIGYLIG 474
Query: 313 DIVYALIDPRVRV 325
DI Y L+DPRV++
Sbjct: 475 DICYVLLDPRVQL 487
>pir||D72059 peptide ABC transporter, permease protein, probable CP0150
[imported] - Chlamydophila pneumoniae (strains CWL029
and AR39) >gi|4376893|gb|AAD18737.1| (AE001644)
Oligopeptide Permease [Chlamydophila pneumoniae CWL029]
>gi|7189086|gb|AAF38032.1| (AE002176) peptide ABC
transporter, permease protein, putative [Chlamydophila
pneumoniae AR39]
Length = 493
Score = 78.4 bits (190), Expect = 1e-13
Identities = 73/270 (27%), Positives = 121/270 (44%), Gaps = 14/270 (5%)
Query: 69 LYVQFINFWKSLLRGDLGY--SILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGA 126
L +F + +LR D G + ++ +S +IK + + P IV +++ G
Sbjct: 220 LETRFARYMSRVLRLDFGTLRNDAHKTVISEVIKRLRCSLVLSILPMIV-GFVLCQIFGM 278
Query: 127 LAG--KNKKYDKYLMPVFYFLASIPYF----WFAMVLVYFLGVKLNIFP--YQGAYSQNL 178
+ +N+ D L +F L SIP F W V + P Y G S
Sbjct: 279 IMALKRNRWIDHSLNFIFLILFSIPVFVAVPWILDNFVINKTIPFTTIPMPYSGLRSPPE 338
Query: 179 VPSFSITF--IVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE 236
V + T I D + H LPF ++ + + + R++ + L D++ +A G
Sbjct: 339 VFNELSTLGRIFDLVSHGFLPFCAVSYGALAAQSRLSRSIFLEVLSQDFICAAKARGLRW 398
Query: 237 -KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQ 295
+L KH +NA + VT LA LG ++ GA+ E +FN G G A L++D+ ++
Sbjct: 399 FDILYKHVGKNAAVSIVTSLASSLGTLLGGALVVETLFNIDGFGNFFYQAILNRDHNVVL 458
Query: 296 GGFLMVIIAVLVANFIIDIVYALIDPRVRV 325
L+ LV + DI Y L+DPRV++
Sbjct: 459 FSVLVGSALSLVGYLLGDICYVLLDPRVQL 488
>dbj|BAA98805.1| (AP002547) oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 493
Score = 78.4 bits (190), Expect = 1e-13
Identities = 73/270 (27%), Positives = 121/270 (44%), Gaps = 14/270 (5%)
Query: 69 LYVQFINFWKSLLRGDLGY--SILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNWLGA 126
L +F + +LR D G + ++ +S +IK + + P IV +++ G
Sbjct: 220 LETRFARYMSRVLRLDFGTLRNDAHKTVISEVIKRLRCSLVLSILPMIV-GFVLCQIFGM 278
Query: 127 LAG--KNKKYDKYLMPVFYFLASIPYF----WFAMVLVYFLGVKLNIFP--YQGAYSQNL 178
+ +N+ D L +F L SIP F W V + P Y G S
Sbjct: 279 IMALKRNRWIDHSLNFIFLILFSIPVFVAVPWILDNFVINKTIPFTTIPMPYSGLRSPPE 338
Query: 179 VPSFSITF--IVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASE 236
V + T I D + H LPF ++ + + + R++ + L D++ +A G
Sbjct: 339 VFNELSTLGRIFDLVSHGFLPFCAVSYGALAAQSRLSRSIFLEVLSQDFICAAKARGLRW 398
Query: 237 -KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQ 295
+L KH +NA + VT LA LG ++ GA+ E +FN G G A L++D+ ++
Sbjct: 399 FDILYKHVGKNAAVSIVTSLASSLGTLLGGALVVETLFNIDGFGNFFYQAILNRDHNVVL 458
Query: 296 GGFLMVIIAVLVANFIIDIVYALIDPRVRV 325
L+ LV + DI Y L+DPRV++
Sbjct: 459 FSVLVGSALSLVGYLLGDICYVLLDPRVQL 488
>emb|CAA68074.1| (X99740) oligopeptide transport system permease protein homolog
[Mycoplasma hominis]
Length = 381
Score = 76.9 bits (186), Expect = 3e-13
Identities = 73/349 (20%), Positives = 153/349 (42%), Gaps = 40/349 (11%)
Query: 5 QYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKF------ 58
+Y+ ++I LT ++L +P+ + + S + T +
Sbjct: 3 KYILQRIAFAILTLFIISIFVYVLVAAFGNNPVNDLAQAQFQASKKSGLTYTEILHKLEI 62
Query: 59 -----YEDLYGLNKPLYVQFINFWKSLL-RGDLGY---------SILYRDSVSNIIKHAL 103
Y+D + P+ V++ N+ K++ +GD G+ S LY + ++ + L
Sbjct: 63 ENGLRYKDNPDVLVPIIVRYGNYMKNIFTKGDFGFLYNPANNPNSALYTN-MAKLFFTPL 121
Query: 104 PYDIAILFPAIVLSWIIGNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYF- 160
Y + I P +S I+G +G +AG + K +D +IP F A +++
Sbjct: 122 QYSLIITVPTFFISSILGIAIGVIAGYKRGKWFDVSSNVFVLIFVAIPSFILAPIVITIS 181
Query: 161 --LGVKLNIFPYQGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMII 218
LG+ ++ P G S F + F+ ++ P + I + + RN +I
Sbjct: 182 VALGIS-SVVPRPGEQS------FGVMFV-----SYLPPIFVMSITSLAGYVTYTRNQVI 229
Query: 219 YELEADYVRYLEALG-ASEKLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPG 277
L +++V + G +S ++ K+ RN +P + + +++G+I E + PG
Sbjct: 230 TVLTSNFVLIAKTKGLSSSQIFFKYVLRNISIPLFSLVFGSFIGLLSGSIIIEQYWQVPG 289
Query: 278 VGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVRVS 326
++++A + + ++ L L+A+ IID+ YA++DP+++ S
Sbjct: 290 TSQIIVNAFPTGEINVVMFSTLFFTFISLIADIIIDVSYAILDPKIKYS 338
>sp|P18793|AMIC_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN AMIC
>gi|98016|pir||S11150 amiC protein - Streptococcus
pneumoniae >gi|47344|emb|CAA35214.1| (X17337) AmiC
protein [Streptococcus pneumoniae]
Length = 498
Score = 73.4 bits (177), Expect = 4e-12
Identities = 59/220 (26%), Positives = 110/220 (49%), Gaps = 16/220 (7%)
Query: 114 IVLSWIIGNWLGALAG--KNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQ 171
+VL++ + LG+ KN D FL ++P + LVY + +
Sbjct: 291 LVLAYALAVPLGSAMARFKNTWIDSLSTGALTFLLALP----TIALVYIVRLI------- 339
Query: 172 GAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEA 231
S L SF I D+ + ++LP + L ++ AI +R +I D+VR+ A
Sbjct: 340 -GSSIALPDSFPILGAGDW-RSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARA 397
Query: 232 LGASEKLLT-KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQD 290
G SEK ++ KH ++NA++P V+G+ + ++ GA TE VF +PG+G +L+ + + +
Sbjct: 398 KGLSEKEISNKHIFKNAMVPLVSGIPAAIIGVIGGATLTETVFAFPGMGKMLIDSVKASN 457
Query: 291 YFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVRVSYEEG 330
++ G + + + + DI +IDPR++++ + G
Sbjct: 458 NSMVVGLVFIFTCISIFSRLLGDIWMTIIDPRIKLTEKGG 497
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.147 0.452
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120996485
Number of Sequences: 2977
Number of extensions: 5085102
Number of successful extensions: 17923
Number of sequences better than 1.0e-10: 136
Number of HSP's better than 0.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 17485
Number of HSP's gapped (non-prelim): 146
length of query: 330
length of database: 189,106,746
effective HSP length: 50
effective length of query: 280
effective length of database: 159,182,396
effective search space: 44571070880
effective search space used: 44571070880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 165 (68.7 bits)