BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1345 (dppC-3) DE:ABC TRANSPORTER
(309 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75068 abc transporter PAB1345 - Pyrococcus abyssi (strain ... 611 e-174
pir||C71163 probable oligopeptide transport system permease prot... 532 e-150
pir||B75142 oligopeptide transport integral membrane protein. PA... 345 5e-94
pir||C72282 oligopeptide ABC transporter, permease protein - The... 286 2e-76
pir||G72428 oligopeptide ABC transporter, permease protein - The... 247 2e-64
pir||F82301 peptide ABC transporter, permease protein VC0618 [im... 192 6e-48
pir||H75026 oligopeptide abc transporter, permease protein (appc... 171 7e-42
pir||H71211 probable oligopeptide transport system permease prot... 169 5e-41
emb|CAA64610.1| (X95287) archaeal ABC-transporter system [Methan... 165 7e-40
pir||D71130 probable oligopeptide transport permease protein APP... 164 1e-39
pir||B72284 oligopeptide ABC transporter, permease protein - The... 162 4e-39
pir||A72421 oligopeptide ABC transporter, permease protein - The... 162 4e-39
gb|AAC24214.1| (AF055482) ABC transporter [Thermotoga neapolitana] 161 8e-39
gb|AAK42788.1| ABC transporter, permease protein [Sulfolobus sol... 157 2e-37
pir||T35981 probable peptide transport permease - Streptomyces c... 157 2e-37
pir||C82356 peptide ABC transporter, permease protein VC0173 [im... 156 4e-37
pir||H72536 probable oligopeptide transport system permease prot... 155 5e-37
gb|AAK43147.1| ABC transporter, permease [Sulfolobus solfataricus] 155 6e-37
pir||E75202 dipeptide abc transporter, dipeptide-binding protein... 153 3e-36
pir||C72393 oligopeptide ABC transporter, permease protein - The... 151 9e-36
sp|P42063|APPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 145 7e-34
emb|CAC12448.1| (AL445067) oligopeptide transport system, permea... 145 7e-34
pir||JC5121 oligopeptide permease-like protein - Synechococcus s... 145 9e-34
pir||C72367 oligopeptide ABC transporter, permease protein - The... 145 9e-34
dbj|BAB04068.1| (AP001508) oligopeptide ABC transporter (permeas... 145 9e-34
dbj|BAB03749.1| (AP001507) oligopeptide ABC transporter (permeas... 141 1e-32
dbj|BAB07356.1| (AP001519) oligopeptide ABC transporter (permeas... 141 1e-32
sp|P26904|DPPC_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 140 2e-32
emb|CAC16445.1| (AL450165) putative oligopeptide ABC transporter... 139 3e-32
gb|AAK41512.1| Oligo/dipeptide transport, permease protein (dppC... 138 7e-32
pir||D72424 oligopeptide ABC transporter, permease protein - The... 138 7e-32
pir||E72720 probable oligopeptide transport system permease prot... 138 9e-32
pir||S75778 oligopeptide transport system permease protein appC ... 137 2e-31
gi|11499358 dipeptide ABC transporter, permease protein (dppC) [... 136 4e-31
sp|P51000|DPPC_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 135 6e-31
pir||D72300 oligopeptide ABC transporter, permease protein - The... 135 6e-31
emb|CAA40004.1| (X56678) dciAC [Bacillus subtilis] 134 1e-30
gb|AAC64254.1| (AF042861) putative OppC [Treponema denticola] 133 2e-30
pir||D70431 oligopeptide transport system permease - Aquifex aeo... 133 3e-30
sp|P37315|DPPC_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 132 5e-30
sp|P45053|OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 132 5e-30
pir||A75381 peptide ABC transporter, permease protein - Deinococ... 132 5e-30
sp|Q10623|YC82_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN... 132 7e-30
pir||A75118 dipeptide abc transporter, permease protein (dppc) P... 131 1e-29
gb|AAG09259.1| (AF176664) EppC [EDTA-degrading bacterium BNC1] 131 1e-29
gb|AAK43158.1| Maltose ABC transporter, permease [Sulfolobus sol... 131 1e-29
pir||C75573 peptide ABC transporter, permease protein - Deinococ... 131 1e-29
gi|10954709 hypothetical ABC-transporter gene~similar to dppC ge... 131 1e-29
pir||D70141 oligopeptide ABC transporter, permease protein (oppC... 130 2e-29
pir||T44599 oligopeptide transport system permease protein [impo... 129 3e-29
sp|P24139|OPPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 129 4e-29
pir||C38447 sporulation initiation protein spo0KC - Bacillus sub... 129 4e-29
gb|AAC46286.1| (AF000366) oligopeptide permease homolog C [Borre... 129 6e-29
gb|AAC67219.1| (U78968) transmembrane transport protein DppC [St... 129 6e-29
gb|AAF73092.1|AF103793_3 (AF103793) transmembrane protein OppC [... 129 6e-29
pir||E72289 oligopeptide ABC transporter, permease protein - The... 128 1e-28
pir||C72617 probable dipeptide transport system permease protein... 127 1e-28
gb|AAG22036.1|AF305387_3 (AF305387) OppC [Bacillus thuringiensis] 126 4e-28
pir||T35940 probable transport permease protein - Streptomyces c... 125 5e-28
dbj|BAB07361.1| (AP001519) dipeptide ABC transporter (permease) ... 125 9e-28
pir||E71014 probable dipeptide transport system permease protein... 124 1e-27
sp|Q07743|OPPC_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 123 2e-27
emb|CAC11414.1| (AL445063) ABC-transporter (orf C) related prote... 123 2e-27
sp|P77664|OPPC_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 122 4e-27
sp|P94312|DPPC_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 122 4e-27
gb|AAK42737.1| Dipeptide ABC transporter permease protein (dppC-... 122 4e-27
pir||D64557 dipeptide ABC transporter, permease protein - Helico... 122 6e-27
gb|AAB38742.1| (U78885) transport system permease homolog [Liste... 120 2e-26
emb|CAC11409.1| (AL445063) probable dipeptide transport system p... 120 2e-26
sp|P08006|OPPC_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 120 3e-26
pir||D82242 oligopeptide ABC transporter, permease protein VC109... 120 3e-26
pir||E75454 peptide ABC transporter, permease protein - Deinococ... 119 4e-26
pir||D83082 probable permease of ABC transporter PA4504 [importe... 118 8e-26
pir||C72059 peptide ABC transporter, permease protein, probable ... 118 1e-25
pir||G72215 oligopeptide ABC transporter, permease protein - The... 116 2e-25
pir||S76046 hypothetical protein - Synechocystis sp. (strain PCC... 116 2e-25
gi|10955091 moaC [Agrobacterium tumefaciens] >gi|11277278|pir||T... 116 2e-25
pir||E72371 oligopeptide ABC transporter, permease protein - The... 116 2e-25
pir||T34756 oligopeptide transport integral membrane protein - S... 116 4e-25
gb|AAK41520.1| Oligo/dipeptide transport, permease protein (dppC... 115 6e-25
pir||D82442 probable peptide ABC transporter, permease protein V... 115 6e-25
gb|AAC69839.1| (AF076683) oligopeptide transporter putative memb... 115 1e-24
gi|10954944 Probable accE [Agrobacterium tumefaciens] >gi|649829... 113 2e-24
gb|AAG20459.1| (AE005118) oligopeptide transport permease protei... 113 2e-24
pir||G75529 peptide ABC transporter, permease protein - Deinococ... 113 3e-24
pir||T03434 probable transport protein accE - Agrobacterium tume... 111 8e-24
pir||H72451 probable peptide transport system permease protein A... 111 8e-24
gb|AAG20590.1| (AE005129) dipeptide ABC transporter permease; Dp... 111 1e-23
pir||C71510 probable oligopeptide permease - Chlamydia trachomat... 111 1e-23
pir||E83419 probable permease of ABC transporter PA1808 [importe... 110 2e-23
pir||F81668 peptide ABC transporter, permease protein, probable ... 109 3e-23
sp|P75799|YLID_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 109 5e-23
pir||C64551 oligopeptide ABC transporter, permease protein - Hel... 108 1e-22
pir||F71957 ABC transporter, permease - Helicobacter pylori (str... 107 2e-22
gb|AAC69844.1| (AF076684) oligopeptide transporter putative memb... 106 4e-22
gb|AAC18098.1| (AF058302) membrane component of putative ABC tra... 105 6e-22
pir||A83389 probable permease of ABC transporter PA2060 [importe... 105 8e-22
sp|Q53192|Y4TQ_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE P... 104 1e-21
gi|10955081 agaC [Agrobacterium tumefaciens] >gi|11277275|pir||T... 103 3e-21
dbj|BAB04288.1| (AP001509) nickel transport system (permease) [B... 103 3e-21
dbj|BAB05795.1| (AP001514) oligopeptide ABC transporter (permeas... 102 4e-21
sp|P33592|NIKC_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NI... 102 5e-21
pir||A70789 probable peptidetransport system permease - Mycobact... 102 5e-21
dbj|BAB05517.1| (AP001513) nickel ABC transporter (permease) [Ba... 101 1e-20
sp|P77463|YDDQ_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 100 3e-20
gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhod... 100 3e-20
dbj|BAA94701.1| (AB026907) dipeptide transporter DppC homolog [O... 100 4e-20
gb|AAG20450.1| (AE005117) dipeptide ABC transporter permease; Dp... 100 4e-20
pir||T45277 oligopeptide transport integral membrane protein bld... 99 5e-20
sp|P18794|AMID_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 96 4e-19
pir||D82170 peptide ABC transporter, permease protein VC1682 [im... 96 4e-19
emb|CAC05749.1| (AL391751) putative peptide transport system int... 96 4e-19
sp|P33915|YEJE_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 96 5e-19
dbj|BAA97045.1| (AB015765) SapC [Vibrio alginolyticus] 95 9e-19
sp|P47324|OPPC_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 92 6e-18
sp|P75553|OPPC_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 92 8e-18
emb|CAA61524.1| (X89237) oligopeptidepermease [Streptococcus pyo... 92 1e-17
emb|CAA68075.1| (X99740) oligopeptide transport system permease ... 89 7e-17
pir||D81253 probable peptide ABC-transport system permease prote... 87 3e-16
gb|AAB67065.1| (U94729) putative transmembrane protein [Salmonel... 81 2e-14
dbj|BAB13782.1| (AB038238) NikC [Vibrio parahaemolyticus] 78 1e-13
sp|P36669|SAPC_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 76 7e-13
pir||A70193 oligopeptide ABC transporter, permease protein (oppC... 76 7e-13
sp|Q47624|SAPC_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 73 4e-12
gb|AAF28111.1|AF153317_3 (AF153317) SapC [Shigella dysenteriae] 73 4e-12
>pir||G75068 abc transporter PAB1345 - Pyrococcus abyssi (strain Orsay)
>gi|5458957|emb|CAB50444.1| (AJ248287) ABC TRANSPORTER
[Pyrococcus abyssi]
Length = 309
Score = 611 bits (1558), Expect = e-174
Identities = 309/309 (100%), Positives = 309/309 (100%)
Query: 1 MKGKADILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSS 60
MKGKADILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSS
Sbjct: 1 MKGKADILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSS 60
Query: 61 KTLPPMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTL 120
KTLPPMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTL
Sbjct: 61 KTLPPMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTL 120
Query: 121 GITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWP 180
GITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWP
Sbjct: 121 GITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWP 180
Query: 181 WVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILAS 240
WVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILAS
Sbjct: 181 WVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILAS 240
Query: 241 ATLDFIGLGPTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEE 300
ATLDFIGLGPTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEE
Sbjct: 241 ATLDFIGLGPTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEE 300
Query: 301 VFNPRLRGE 309
VFNPRLRGE
Sbjct: 301 VFNPRLRGE 309
>pir||C71163 probable oligopeptide transport system permease protein AppC -
Pyrococcus horikoshii >gi|3256909|dbj|BAA29592.1|
(AP000002) 304aa long hypothetical oligopeptide
transport system permease protein AppC [Pyrococcus
horikoshii]
Length = 304
Score = 532 bits (1355), Expect = e-150
Identities = 257/303 (84%), Positives = 286/303 (93%), Gaps = 1/303 (0%)
Query: 6 DILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPP 65
++++LAFRNNKFKFG G++ F++F +IGPLFTPFASDGLYYE+VGKI++ +YS+KTLPP
Sbjct: 2 EVIKLAFRNNKFKFGFGMLIAFIIFGLIGPLFTPFASDGLYYEQVGKIKIASYSAKTLPP 61
Query: 66 MTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIG 125
MTRENIT YTGK +EVLHILGTDKEGKDLY ELVYGLRTSLW+A LAAIIGT GITIG
Sbjct: 62 MTRENITT-YTGKKVEVLHILGTDKEGKDLYTELVYGLRTSLWVAFLAAIIGTITGITIG 120
Query: 126 LVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARS 185
VSGYKGG+VDELLMMFVNIMLVIPSIVLLILVAA+LEARSPE+QALIIGLTNWPWVARS
Sbjct: 121 FVSGYKGGLVDELLMMFVNIMLVIPSIVLLILVAAYLEARSPEIQALIIGLTNWPWVARS 180
Query: 186 VRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDF 245
VRAQTLSLKNREFV++SKI+G+ DLRII E+I+PNMISYIFM GILQVSGAILASATLDF
Sbjct: 181 VRAQTLSLKNREFVHMSKIMGVGDLRIIVEDILPNMISYIFMTGILQVSGAILASATLDF 240
Query: 246 IGLGPTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
IGLGPTT+VSLGVILQKAIMHNALQFGWWWWFIPPGL ITLIIT+LFF+NLG+EEVFNPR
Sbjct: 241 IGLGPTTMVSLGVILQKAIMHNALQFGWWWWFIPPGLFITLIITSLFFINLGLEEVFNPR 300
Query: 306 LRG 308
LRG
Sbjct: 301 LRG 303
>pir||B75142 oligopeptide transport integral membrane protein. PAB2363 -
Pyrococcus abyssi (strain Orsay)
>gi|5458362|emb|CAB49851.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT INTEGRAL MEMBRANE PROTEIN. [Pyrococcus abyssi]
Length = 306
Score = 345 bits (875), Expect = 5e-94
Identities = 162/302 (53%), Positives = 222/302 (72%), Gaps = 2/302 (0%)
Query: 8 LRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMT 67
L++A +N KFK G ++ L A+ GPL TPF + G Y K G P + LPPM+
Sbjct: 7 LKIALKNKKFKVGFIIVIIMALIALFGPLITPFDNMGYYPLKFGNTTYPKPGTPALPPMS 66
Query: 68 RENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLV 127
+ TI + V H LGTD G+D+YA+L YG+R+S I + A + T LG+ IG +
Sbjct: 67 SD--TIYGPEGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFI 124
Query: 128 SGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVR 187
+GYKGG +DE+LMM NIMLVIP++ LLI++AA+L R ++++IIGLT WPW AR+VR
Sbjct: 125 AGYKGGWIDEVLMMITNIMLVIPTMALLIIIAAYLPYRGVGIESVIIGLTAWPWTARAVR 184
Query: 188 AQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIG 247
AQTLSLKNREF++L+K+ GL D++IIF++IMPN+ISY+FM ILQ G+ILA+ LDFIG
Sbjct: 185 AQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIG 244
Query: 248 LGPTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
LGPT +SLG++LQ+A++ NA+ G+WWW IPPGL+I ++IT L+F+N G++EVFNPRLR
Sbjct: 245 LGPTRGMSLGIMLQQAVLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
Query: 308 GE 309
GE
Sbjct: 305 GE 306
>pir||C72282 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981774|gb|AAD36296.1|AE001778_17 (AE001778)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 282
Score = 286 bits (724), Expect = 2e-76
Identities = 144/304 (47%), Positives = 206/304 (67%), Gaps = 26/304 (8%)
Query: 4 KADILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTL 63
+ + + +N K F I + + ++ A++GP +P+ D L + VG P Y
Sbjct: 3 RKEFVHFFLKNKKVIFAICVYAGLIILALVGPYLSPY-KDPLAF--VG----PGYQ---- 51
Query: 64 PPMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGIT 123
P ++E H LGT+ G+D++ +LVYGLR+SL++ VL + T +G+
Sbjct: 52 -PPSKE--------------HWLGTNTFGQDIFTQLVYGLRSSLFVGVLGGTLATVIGLL 96
Query: 124 IGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVA 183
IG V+GYKGG DELLMMF NI++VIP++ LLI++AA+L R ++++IIGLT WPW A
Sbjct: 97 IGFVAGYKGGWFDELLMMFTNILMVIPTLALLIIIAAYLPYRGVFIESIIIGLTAWPWTA 156
Query: 184 RSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATL 243
R+VRAQTLSLK REFV+L++I ++IIF EIMPNM+SY+FM ILQ GAILA+ L
Sbjct: 157 RAVRAQTLSLKTREFVDLARITARKPMKIIFGEIMPNMMSYVFMVFILQFGGAILAATGL 216
Query: 244 DFIGLGPTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFN 303
DFIGLGPT +SLG+++Q+A + NA+Q G WWW I PG +ITL++ L+ +N G++EVFN
Sbjct: 217 DFIGLGPTRGISLGIMMQQATLWNAIQLGMWWWAITPGAVITLMVATLYVMNAGLDEVFN 276
Query: 304 PRLR 307
P+LR
Sbjct: 277 PKLR 280
>pir||G72428 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980513|gb|AAD35123.1|AE001690_17 (AE001690)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 280
Score = 247 bits (623), Expect = 2e-64
Identities = 125/303 (41%), Positives = 188/303 (61%), Gaps = 27/303 (8%)
Query: 7 ILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPM 66
++R F+N KF G + FF+ I GP+F + ++ E P S+
Sbjct: 5 MIRPLFKNKKFIIGFSIFLFFLFLGIFGPMFYRVDPTEMTWD----YEQPPSSA------ 54
Query: 67 TRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGL 126
H LGTD G+D+ A+L++G+R+SL+I LAAII +G IG
Sbjct: 55 -----------------HPLGTDTYGRDVLAQLLHGIRSSLYIGFLAAIISLVIGTIIGS 97
Query: 127 VSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSV 186
S K GIVD++LM NI+L PSI++ IL+A++L+ RS E+ A+I+GL WPW AR++
Sbjct: 98 FSAVKRGIVDDVLMGITNIVLTTPSILIAILIASYLKVRSVEMVAVILGLFQWPWFARAI 157
Query: 187 RAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFI 246
RAQ +S+ +RE+V LS + G SDLR++ E+++P + +Y FM+ +L ++G I+ A L I
Sbjct: 158 RAQLMSVMSREYVYLSVMAGYSDLRLVIEDLIPTIATYAFMSFVLFINGGIMGEAGLSLI 217
Query: 247 GLGPTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRL 306
GLGPT +SLG++LQ A++ A++ G WWWF+PPGL I + +L ++ M+EVFNPRL
Sbjct: 218 GLGPTQGISLGIMLQWAVLMEAVRRGLWWWFVPPGLAIVAVTASLLVISTAMDEVFNPRL 277
Query: 307 RGE 309
R E
Sbjct: 278 REE 280
>pir||F82301 peptide ABC transporter, permease protein VC0618 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655051|gb|AAF93784.1| (AE004147) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 341
Score = 192 bits (482), Expect = 6e-48
Identities = 111/304 (36%), Positives = 172/304 (56%), Gaps = 17/304 (5%)
Query: 14 NNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKI-ELPAY---SSKTLPP---- 65
N G+ ++ F L A+ PL T D ++ G E PA+ ++K P
Sbjct: 11 NRMAMIGVTILGLFFLLAVAAPLLTSHEPD----KRTGNPHEYPAFVVKAAKANPDGWIA 66
Query: 66 --MTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGIT 123
+ + T+ + K HILGT + G+D+++++ YG R SL + A I L
Sbjct: 67 ENLATDRRTLAMSKKAD---HILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATV 123
Query: 124 IGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVA 183
IG+ +GY GG +D+ L +NIMLVIP LL ++AAF+ P ALIIG T+W W A
Sbjct: 124 IGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGA 183
Query: 184 RSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATL 243
R VR+QT++L+ +EFV ++++G S RIIF EI+PN+IS + + I V AI+ AT+
Sbjct: 184 RVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATI 243
Query: 244 DFIGLGPTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFN 303
F+GLG +S G++L +++ G WW + P L +TL++T L +N ++E+ N
Sbjct: 244 SFLGLGDPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIAN 303
Query: 304 PRLR 307
P+LR
Sbjct: 304 PQLR 307
>pir||H75026 oligopeptide abc transporter, permease protein (appc) PAB1195 -
Pyrococcus abyssi (strain Orsay)
>gi|5459168|emb|CAB50654.1| (AJ248288) oligopeptide ABC
transporter, permease protein (appC) [Pyrococcus abyssi]
Length = 477
Score = 171 bits (430), Expect = 7e-42
Identities = 101/283 (35%), Positives = 151/283 (52%), Gaps = 11/283 (3%)
Query: 28 VLF--AIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYTGKTIEVLHI 85
VLF A G L P G Y ++ Y+ + +N+ I++TG+T +
Sbjct: 201 VLFGKAQTGILINPEPLKGTY-----TFDVELYTFNPEDQVNFDNLKIIFTGRTYGYM-- 253
Query: 86 LGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNI 145
GTD +G+DL+A LV+G R SL I + A++ G+ G+ S Y GG DE++M F
Sbjct: 254 -GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
Query: 146 MLVIPSIVLLILVA-AFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKI 204
M IP++ +LI++A AF + + L++ + W +AR R+ L +K + +V +
Sbjct: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
Query: 205 VGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVILQKAI 264
+G RIIF+ IMP ++ Y F L V GA+L A L ++GLG T V+ G IL A
Sbjct: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDAQ 432
Query: 265 MHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
NA G+WWW IPPGL I L+ + ++ V NPRLR
Sbjct: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
>pir||H71211 probable oligopeptide transport system permease protein appC -
Pyrococcus horikoshii >gi|3258404|dbj|BAA31087.1|
(AP000007) 474aa long hypothetical oligopeptide
transport system permease protein appC [Pyrococcus
horikoshii]
Length = 474
Score = 169 bits (423), Expect = 5e-41
Identities = 100/283 (35%), Positives = 153/283 (53%), Gaps = 12/283 (4%)
Query: 28 VLFAIIGP--LFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYTGKTIEVLHI 85
V+FA I P L +P G Y+ + +I+LP +S L ++ TG+T L
Sbjct: 199 VVFAKISPNMLDSPEPLRGEYHI-IYEIKLPRGTSVDL-----SKAEVVLTGRTYGYL-- 250
Query: 86 LGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNI 145
GTD +G+DL+A LV+G R SL + + A++ +GI G+ + Y GG DEL+M F
Sbjct: 251 -GTDDKGRDLFAGLVWGSRVSLAVGISTAVLSVLIGIFYGVAAAYFGGWTDELMMRFQEF 309
Query: 146 MLVIPSIVLLILVAAFLEARSPEVQ-ALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKI 204
M IP++ +LIL+ + Q L++ + W +AR R+ +K + +V +
Sbjct: 310 MASIPTLPILILLGTYFGGHIQLWQIVLLLAVFGWVGIARVARSMAYQIKEQTYVEAAIA 369
Query: 205 VGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVILQKAI 264
+G RIIF+ ++P ++ Y F L V GA+LA A+L F+GLG T V+ G IL A
Sbjct: 370 LGAGTGRIIFKHMVPQLLPYAFAQMALSVPGAVLAEASLSFLGLGDPTQVTWGQILHDAQ 429
Query: 265 MHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
+ A G+WWW IPPG+ I L+ + ++ V NPRLR
Sbjct: 430 VAGAAVNGYWWWVIPPGIAIALVALTFVLIGTALDRVLNPRLR 472
>emb|CAA64610.1| (X95287) archaeal ABC-transporter system [Methanosarcina mazei]
Length = 322
Score = 165 bits (413), Expect = 7e-40
Identities = 91/282 (32%), Positives = 150/282 (52%), Gaps = 33/282 (11%)
Query: 20 GIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYTGKT 79
GI L + F+ A+ L P+A Y++ E P+
Sbjct: 58 GIFLFALFLFMALFPSLLAPYAP----YDRFTPYEEPSGQ-------------------- 93
Query: 80 IEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELL 139
H+LGT+ G D+ +ELVYG + SL + AA++ T +G +GL SGY G VDELL
Sbjct: 94 ----HLLGTNDIGNDILSELVYGAKVSLTVGFAAALVSTLIGTILGLCSGYFRGAVDELL 149
Query: 140 MMFVNIMLVIPSIVLLILVAAFLEARSPEVQALI--IGLTNWPWVARSVRAQTLSLKNRE 197
M F +I+L+IP I L+I++ A+L+ P + L+ +GL +W AR R++TL L+
Sbjct: 150 MGFTDIVLIIPKIPLIIVLGAYLQ---PSIWILVPVLGLLSWESTARVTRSKTLQLRETG 206
Query: 198 FVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLG 257
+V ++ +G S I+F +I+PN+ + +L + A+++ A+L F+GL ++ S G
Sbjct: 207 YVKSARCMGFSSQHIMFSDILPNLYHVLLPKFMLATASAMISEASLSFLGLSDVSMKSWG 266
Query: 258 VILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGME 299
+L A WWW++PPG+ ITL + ++ + G+E
Sbjct: 267 TMLSFAFSRGGFIRDMWWWYLPPGICITLCVISIALIGFGIE 308
>pir||D71130 probable oligopeptide transport permease protein APPC - Pyrococcus
horikoshii >gi|3257219|dbj|BAA29902.1| (AP000003) 283aa
long hypothetical oligopeptide transport permease
protein APPC [Pyrococcus horikoshii]
Length = 283
Score = 164 bits (411), Expect = 1e-39
Identities = 86/224 (38%), Positives = 135/224 (59%), Gaps = 4/224 (1%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H +GTD G+D+++ +++G RTSL + ++AA + +G+ +G V+GY GG +D++L
Sbjct: 58 HPMGTDNLGRDIFSRVLWGTRTSLLVGLVAAGLSAIIGVLVGGVAGYYGGTIDDILSRIT 117
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
I LVIP L +LV + + + +++GL WP AR +RAQ LSLK REF+ +
Sbjct: 118 EIFLVIPGFFLALLVVSIFGSSLLNIM-IVLGLLIWPSNARLMRAQALSLKEREFIQALR 176
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVILQKA 263
+ G+SDLRI+ I+PN I I LQ++GAI+ A L FIGLG VVS G ++ +
Sbjct: 177 VAGVSDLRIVLRHIIPNGIQPIIANTFLQMAGAIITEAGLSFIGLGDPNVVSWGKMIYEG 236
Query: 264 IMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
++ +WW I PG+ + L + AL + G+ + NP+LR
Sbjct: 237 QIYITT---YWWVPIFPGVFLVLTVLALNLLGDGLLTLLNPKLR 277
>pir||B72284 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981748|gb|AAD36272.1|AE001776_8 (AE001776)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 291
Score = 162 bits (407), Expect = 4e-39
Identities = 82/227 (36%), Positives = 142/227 (62%), Gaps = 3/227 (1%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H GT+ G+D++ L + +R SL IAV+ A + I +G+VSGYKGG +D++LM
Sbjct: 57 HPFGTNWLGQDVFWRLTFAVRNSLLIAVITAFFSRIIAIIVGIVSGYKGGALDQVLMTIG 116
Query: 144 NIMLVIPSIVLLILVAAFLE--ARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNL 201
+ +V+P +++LI+++ L+ ARS L++ +W W AR +R+Q LS++ R+FV +
Sbjct: 117 DTTMVLPILIVLIVISMILKDWARSFVNLGLLLAFFSWAWDARVIRSQVLSVRERDFVRV 176
Query: 202 SKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVIL 260
+ + G+S ++I+ ++++P+++ IF I +S AI TL ++GLG TV +LG +L
Sbjct: 177 AVLSGMSTMKIVGKQLLPHVLPVIFTTFINNMSWAIGMEITLAYLGLGIDPTVPTLGTML 236
Query: 261 QKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
Q+AI AL G WWW P + L+ AL+++++ + E +PR R
Sbjct: 237 QRAITRQALFLGLWWWLAAPIVTAILLFIALYWLSVSISEYLDPRAR 283
>pir||A72421 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980561|gb|AAD35167.1|AE001694_3 (AE001694)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 287
Score = 162 bits (407), Expect = 4e-39
Identities = 77/225 (34%), Positives = 137/225 (60%), Gaps = 1/225 (0%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
HILGT+ G+D++ +L + +R SL ++++A ++ + + +G+++GYKGG D +L
Sbjct: 56 HILGTNSMGQDIFWKLTFAVRNSLVMSLIAGLVSRIIAMIVGMIAGYKGGAADRVLTFLS 115
Query: 144 NIMLVIPSIVLLILVAAFLEAR-SPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLS 202
+ LVIP ++++LVA+ ++ R S + L++G+ W W AR +R+Q LSL+ R+F +
Sbjct: 116 DSFLVIPLFIIIVLVASIVKGRLSLPMLGLLLGVFGWAWDARVIRSQVLSLRERDFTYTA 175
Query: 203 KIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVILQK 262
+ G L I+F+E +P +I IF I +S AI TL +G+ + +LG +LQ
Sbjct: 176 LLSGSKALSIVFKEYLPFLIPLIFATLIGNMSWAIGMEITLAILGVSNLDIPTLGTMLQW 235
Query: 263 AIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
+I + AL G+WWW + P L + AL+ +++ + E +PR+R
Sbjct: 236 SINYQALLLGYWWWVLTPVLTSIFLFIALYLISISISEYLDPRMR 280
>gb|AAC24214.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 292
Score = 161 bits (404), Expect = 8e-39
Identities = 80/227 (35%), Positives = 141/227 (61%), Gaps = 3/227 (1%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H LGT+ G+D++ L + +R SL IAV+ A+ + + +G++SGYKGG VD +LM
Sbjct: 57 HPLGTNWLGQDVFWRLTFAVRNSLMIAVVTALFSRAIAVFVGILSGYKGGAVDRVLMTVG 116
Query: 144 NIMLVIPSIVLLILVAAFLE--ARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNL 201
+ +V+P +++LI+++ L +S L++ +W W AR +R+Q LSL+ R+F +
Sbjct: 117 DTTMVLPFLIVLIVISMILRDWTKSFFNLGLLLAFFSWAWDARVIRSQVLSLRERDFTFV 176
Query: 202 SKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVIL 260
+ + G+S LRI++++++P+++ IF I ++ AI TL ++GLG TV ++G +L
Sbjct: 177 AILSGMSTLRIVYKQLLPHVLPIIFTTFINNMAWAIGMEITLAYLGLGIDPTVPTIGTML 236
Query: 261 QKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
Q+AI AL G WWW + P + L+ AL++++ + E +PR R
Sbjct: 237 QRAIYRQALFLGLWWWLVAPIVAAILLFVALYWLSTSVSEYLDPRAR 283
>gb|AAK42788.1| ABC transporter, permease protein [Sulfolobus solfataricus]
Length = 290
Score = 157 bits (393), Expect = 2e-37
Identities = 86/303 (28%), Positives = 166/303 (54%), Gaps = 23/303 (7%)
Query: 6 DILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPP 65
+ LRL + N K + G+ + F++L AI G + P + +LPP
Sbjct: 8 EYLRLLWDNKKSRVGLIITVFYILIAIFGQIIFP-------------------KTYSLPP 48
Query: 66 MTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIG 125
TI + I GT + + +++ G ++ + I+ LA + T +GI +G
Sbjct: 49 SPT---TIFMPPQLSNFYLIFGTGPFAESILVQIIQGAKSVIEISFLAGLFATLIGIVVG 105
Query: 126 LVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARS 185
+++GY GGI+D +LM +I+L +PS++L+I++ + + +P +LI+ +T+W +AR+
Sbjct: 106 IIAGYLGGIIDNILMGITDIILTLPSLILIIIIVSAFKTSNPIFLSLILSITSWAGLARA 165
Query: 186 VRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDF 245
VR+Q L ++N V + +++GLS IIF E++P + SYI + I V A+ A L +
Sbjct: 166 VRSQVLVIRNSPAVEVLRVLGLSRKYIIFREVVPTLGSYIAIHYIFNVEAAVYAEVGLYY 225
Query: 246 IGLGPTTVVSLGVILQKAIMHNALQFGWWWWFIP-PGLIITLIITALFFVNLGMEEVFNP 304
+G+ P + G ++Q+A+ + A G +++ P +++ ++ L ++ G++E+ NP
Sbjct: 226 LGVLPYNPNNWGAMIQQALSYGAAAGGKAIYYLAFPTIVVAGFMSGLILLSYGIDEISNP 285
Query: 305 RLR 307
R+R
Sbjct: 286 RIR 288
>pir||T35981 probable peptide transport permease - Streptomyces coelicolor
>gi|4464266|emb|CAB37469.1| (AL035559) putative peptide
transport permease [Streptomyces coelicolor A3(2)]
Length = 317
Score = 157 bits (392), Expect = 2e-37
Identities = 85/221 (38%), Positives = 131/221 (58%), Gaps = 1/221 (0%)
Query: 86 LGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNI 145
LGTD+ G+ L L++G R SL + +LAA++ +G IG+ +G+ G ++M +
Sbjct: 94 LGTDQFGRSLLGLLIWGSRVSLLVGLLAAVLSVLIGALIGITAGHFRGWYATVMMRITDW 153
Query: 146 MLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIV 205
LV+P++VL I++A L +RS L IG+T WP AR VRAQTL++++R ++ +K +
Sbjct: 154 FLVMPTLVLAIVLATVL-SRSLGTIVLAIGVTTWPTTARLVRAQTLAVESRPYIERAKAL 212
Query: 206 GLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVILQKAIM 265
G I+ ++PN++ I L +S AILA ATL F+GLG VVS G +LQ A
Sbjct: 213 GGGHWHIMSRHVLPNVMPLILAQTTLIISSAILAEATLAFLGLGDPAVVSWGGLLQDARE 272
Query: 266 HNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRL 306
++ G WW+ +PPG+ I ++ A +E V NPRL
Sbjct: 273 AGSVSSGDWWYLVPPGIGIAVVALAFTLCGRAVEAVLNPRL 313
>pir||C82356 peptide ABC transporter, permease protein VC0173 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654576|gb|AAF93349.1| (AE004107) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 312
Score = 156 bits (390), Expect = 4e-37
Identities = 99/313 (31%), Positives = 162/313 (51%), Gaps = 29/313 (9%)
Query: 4 KADILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTL 63
++D L R+ + FV+ AI PL P L + ELP
Sbjct: 16 QSDFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELP------- 68
Query: 64 PPMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGIT 123
P E + +LGTD++G+D+++ ++YG R SL I LA + TLGI
Sbjct: 69 -PSWMEGGNEHF---------LLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIV 118
Query: 124 IGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEAR---------SPEVQALII 174
IGL +GY GG +D LM F +I L ++++ I+V+A +A + + +II
Sbjct: 119 IGLSAGYFGGRIDSFLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVII 178
Query: 175 GLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVS 234
G+ WP AR+VRA L+ K +E+V ++++G RI+F I+PN +S I + +QV+
Sbjct: 179 GVAEWPQYARTVRASVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVA 238
Query: 235 GAILASATLDFIGLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFF 293
AI++ A L F+GLG P SLG ++ +I + G WW PG+++ L++ +
Sbjct: 239 NAIMSEAALSFLGLGLPVDQPSLGSLI--SIGFTYIFSGAWWITAFPGIVLVLLVLVINL 296
Query: 294 VNLGMEEVFNPRL 306
+ + +VFNP++
Sbjct: 297 LGDWLRDVFNPKI 309
>pir||H72536 probable oligopeptide transport system permease protein APE1581 -
Aeropyrum pernix (strain K1) >gi|5105268|dbj|BAA80581.1|
(AP000062) 527aa long hypothetical oligopeptide
transport system permease protein [Aeropyrum pernix]
Length = 527
Score = 155 bits (389), Expect = 5e-37
Identities = 78/223 (34%), Positives = 128/223 (56%), Gaps = 1/223 (0%)
Query: 85 ILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVN 144
+LGTD +G+DL+ L+YG R +L + +L + I G G+VSGY GGI DE+++ F
Sbjct: 305 LLGTDDQGRDLFQGLLYGTRWALIVGLLTSAITVVFGSLYGIVSGYLGGIADEVMLRFAQ 364
Query: 145 IMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKI 204
I+ +P++ LLIL AA + + LI+ + WP +A R+ +K+ +V +
Sbjct: 365 IIYSLPALPLLILFAAIIGGNIWVIIFLIVAFS-WPGIAFVTRSMAFQIKSEPYVEAAIA 423
Query: 205 VGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVILQKAI 264
G +RI+ + P ++ Y+F + L V GA++A A+L F+ LG +V+ G IL +A
Sbjct: 424 SGAGTVRIVLLYLAPQVLPYMFASMALSVPGAVIAEASLSFLNLGDPDLVTWGKILFEAQ 483
Query: 265 MHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
A G+WWW IPPGL I ++ F+ ++ + NP+L+
Sbjct: 484 DAGAALNGYWWWVIPPGLAIAVVGMTFVFIGNALDAILNPKLK 526
>gb|AAK43147.1| ABC transporter, permease [Sulfolobus solfataricus]
Length = 326
Score = 155 bits (388), Expect = 6e-37
Identities = 90/307 (29%), Positives = 155/307 (50%), Gaps = 32/307 (10%)
Query: 6 DILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPP 65
+++R + + G ++ ++F++IG +TP+ + + LPP
Sbjct: 24 NLIRGVWEQRVSRVGFYILLGIIVFSLIGVFYTPYNPSATNFPR------------DLPP 71
Query: 66 MTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIG 125
+ H+LGTD G D++++L+ G + + +IGT + I IG
Sbjct: 72 SPQ---------------HLLGTDDYGHDIFSQLLVGGFPVIGVGFAVGLIGTLIAILIG 116
Query: 126 LVSG-YKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQ----ALIIGLTNWP 180
+ +G Y I+D +L I L+IP I+++ L+ A+L A ++ L + LT W
Sbjct: 117 VTAGLYAETIIDRILSAITQIFLIIPGILIIELIGAYLGALQFKLGYITILLTLSLTGWA 176
Query: 181 WVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILAS 240
W AR +R+ LSL+ RE++ S ++G S L +IF +I+PN + +I I
Sbjct: 177 WGARVLRSLVLSLRRREYILSSDLIGESKLSVIFNQIIPNNLPFIASNFFFTAIYGIAGF 236
Query: 241 ATLDFIGLGPTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEE 300
+ + GLG T V+ G +L ++ A G WWW+IPPGL+I L+ + +N+G++
Sbjct: 237 TFIYYFGLGSLTQVNWGTMLYWSLGGEAYLRGLWWWYIPPGLMIGLVAFSFALINIGIDR 296
Query: 301 VFNPRLR 307
V NPRLR
Sbjct: 297 VANPRLR 303
>pir||E75202 dipeptide abc transporter, dipeptide-binding protein PAB0093 -
Pyrococcus abyssi (strain Orsay)
>gi|5457577|emb|CAB49068.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 287
Score = 153 bits (382), Expect = 3e-36
Identities = 95/298 (31%), Positives = 157/298 (51%), Gaps = 34/298 (11%)
Query: 10 LAFRNNKF-KFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTR 68
L F+ NK G+G+I F+VL AI P P++ + E + PP +
Sbjct: 17 LRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLE-----------DRLKPPCEK 65
Query: 69 ENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVS 128
+ GTD+ G+D+++ +VYG R +L + ++ A+I +G+T+GL+S
Sbjct: 66 ---------------YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLIS 110
Query: 129 GYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALI-IGLTNWPWVARSVR 187
GY GG VDE++M V+I+ P+++L + + A L + A+I I L W AR VR
Sbjct: 111 GYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGL--INAMIAIALVGWASYARVVR 168
Query: 188 AQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIG 247
A+TLS+K F+ ++ +G SDLRI+F I+PN++S I + + AI+ +++L F+G
Sbjct: 169 AETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLG 228
Query: 248 LG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNP 304
LG G++L A ++ W+ I PGL I ++ FV G+ + P
Sbjct: 229 LGAQPPSPDWGLMLSSARVYVTRA---PWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
>pir||C72393 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980802|gb|AAD35390.1|AE001712_3 (AE001712)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 289
Score = 151 bits (378), Expect = 9e-36
Identities = 94/305 (30%), Positives = 156/305 (50%), Gaps = 31/305 (10%)
Query: 7 ILRLAF---RNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTL 63
ILRL F + +FK+ + +++ VL +I+ +F+P+ Y L
Sbjct: 4 ILRLFFDMWEDLRFKYAVTVLTALVLLSILS-IFSPY---------------DPYKWYVL 47
Query: 64 PPMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGIT 123
P T + + HILGTD +G+D++ L + L+ SL +A +AA+ + IT
Sbjct: 48 P-----------TNQPPSLEHILGTDGKGQDIFWLLTFSLKNSLILATIAAVFSRIIAIT 96
Query: 124 IGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEAR-SPEVQALIIGLTNWPWV 182
IG++SGY GG D +LM + +V+P LL+L+++ ++ S + LIIG+ W
Sbjct: 97 IGMLSGYLGGTTDRILMALTDTFMVMPVFPLLLLLSSLIKNYLSLPILGLIIGVFGWAGD 156
Query: 183 ARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASAT 242
AR +R+ LSL+ REFV SK G+ ++F + +P +I I I + GAI
Sbjct: 157 ARVIRSMILSLREREFVVTSKFSGMRTFEVVFGDFVPYLIPVISGGFIGSMMGAIGFEIV 216
Query: 243 LDFIGLGPTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVF 302
L +G + +LG + I A+ G+WWW + P + + TAL+ ++L + E
Sbjct: 217 LAILGFTRVEIPTLGSMFHWMINFQAMLLGYWWWVLTPIVTAVFLFTALYTLSLSINEYL 276
Query: 303 NPRLR 307
+PR R
Sbjct: 277 DPRTR 281
>sp|P42063|APPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC
>gi|2126890|pir||I40547 oligopeptide ABC transporter
(permease) appC - Bacillus subtilis
>gi|677947|gb|AAA62360.1| (U20909) AppC [Bacillus
subtilis] >gi|2633494|emb|CAB12997.1| (Z99110)
oligopeptide ABC transporter (permease) [Bacillus
subtilis]
Length = 303
Score = 145 bits (362), Expect = 7e-34
Identities = 82/254 (32%), Positives = 140/254 (54%), Gaps = 3/254 (1%)
Query: 53 IELPAYSSKTLPPMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVL 112
I + A + + P +E +++ K + H++GTDK G+D+++ ++YG R SL +
Sbjct: 49 IIMSAVFAPLIAPYPQEQQSLLDKYKAPGLEHLMGTDKFGRDIFSRILYGARVSLLVGFA 108
Query: 113 AAIIGTTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQAL 172
+ + +G +G ++GY GIVD ++M V+I+L IP I LLI + + ++ L
Sbjct: 109 SVVGSILIGTVLGALAGYFRGIVDAVIMRVVDIVLSIPDIFLLITLVTIFKPGVDKL-IL 167
Query: 173 IIGLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQ 232
I LT W AR VR + LSL++RE+V +K +G +IIF I+PN + I ++ L+
Sbjct: 168 IFCLTGWTTTARLVRGEFLSLRSREYVLAAKTIGTKTHKIIFSHILPNALGPIIVSATLK 227
Query: 233 VSGAILASATLDFIGLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITAL 291
V ILA + L ++G G + S G +LQ A + + WW+ + PGL I + +
Sbjct: 228 VGSVILAESALSYLGFGIQPPIASWGNMLQDA-QNFTVMIQAWWYPLFPGLFILMTVLCF 286
Query: 292 FFVNLGMEEVFNPR 305
FV G+ + +P+
Sbjct: 287 NFVGDGLRDALDPK 300
>emb|CAC12448.1| (AL445067) oligopeptide transport system, permease protein appC
related protein [Thermoplasma acidophilum]
Length = 318
Score = 145 bits (362), Expect = 7e-34
Identities = 86/306 (28%), Positives = 158/306 (51%), Gaps = 39/306 (12%)
Query: 10 LAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRE 69
+ +N+K K G L+ V+F+IIG + P+ + + +K LPP +
Sbjct: 32 IVLKNSKSKAGFILLVSIVIFSIIGIFYRPYNPEAYLF------------AKALPPNS-- 77
Query: 70 NITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSG 129
++ILGT G+D++++L+ G +L IA I GT + + +GL++G
Sbjct: 78 -------------VNILGTTGYGQDVFSQLIAGAAPTLMIAFSVGIAGTLISVFVGLLAG 124
Query: 130 YKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQAL----IIGLTNWPWVARS 185
+ V+ + ++I LV+P ++L++L + + L I+ +T W + AR+
Sbjct: 125 FSSPAVNGAINAIISIFLVVPGVLLIMLFGTYFLGIHQSLGYLPTIIILVITGWAFGART 184
Query: 186 VRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIM----PNMISYIFMAGILQVSGAILASA 241
R+ TLS+ R+++ S ++G S L IIF +IM P ++S F + G
Sbjct: 185 FRSITLSIAKRDYILSSLLIGESRLSIIFRQIMRAIMPVVVSNFFFTSMYGAMGLTF--- 241
Query: 242 TLDFIGLGPTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEV 301
++++G+G V+ G +L AI + A G WWW +PP ++I+L++ + +N G++E+
Sbjct: 242 -VEYLGVGNIEQVNWGTMLYWAINNEAYLTGQWWWILPPSIMISLLMFSFILLNFGLDEM 300
Query: 302 FNPRLR 307
NP LR
Sbjct: 301 ANPSLR 306
>pir||JC5121 oligopeptide permease-like protein - Synechococcus sp
>gi|1332418|dbj|BAA12725.1| (D85103) OppC-like protein
[Synechococcus sp.]
Length = 351
Score = 145 bits (361), Expect = 9e-34
Identities = 85/230 (36%), Positives = 132/230 (56%), Gaps = 9/230 (3%)
Query: 83 LHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMF 142
LH+LGTD +G+D ++ L+YG R SL + ++ I+ LGI +G ++GY GG VD L+M
Sbjct: 123 LHLLGTDDQGRDQFSRLLYGSRISLSVGLVGVILTFPLGILVGGIAGYWGGWVDALIMRL 182
Query: 143 VNIMLVIPSIVLLILVAAFLE--ARSPEVQALIIGLT---NWPWVARSVRAQTLSLKNRE 197
V +++ IPS+ LL+ +AA L S E LI+ +T NW +AR +R Q LSL+ RE
Sbjct: 183 VEVLMTIPSLYLLVALAAVLPPGLSSAERFLLIVAITSLINWAGLARVIRGQVLSLRERE 242
Query: 198 FVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSL 256
+V S+++G S L ++ I+P ++Y+ +A L V I+A + L +GLG S
Sbjct: 243 YVQASQVMGASRLYLLIRHILPQTLTYVIIAATLAVPSFIVAESVLSLVGLGIQQPDPSW 302
Query: 257 GVILQKAIMHNALQFG-WWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
G +L A + L W W PP L+I + + A V G+ + +PR
Sbjct: 303 GNMLSLATNASMLLLNPWLIW--PPALLIVVAVLAFNVVGDGLRDRLDPR 350
>pir||C72367 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981046|gb|AAD35618.1|AE001728_19 (AE001728)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 516
Score = 145 bits (361), Expect = 9e-34
Identities = 80/232 (34%), Positives = 124/232 (52%), Gaps = 8/232 (3%)
Query: 83 LHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMF 142
L+I+G D+ G+D+++ +V+ R SL I + I L + G +SGY GGIVDE +M F
Sbjct: 287 LYIMGADQYGRDVWSRIVFASRISLSIGFIGMFITFALSLVFGGISGYYGGIVDEFMMRF 346
Query: 143 VNIMLVIPSIVLLILVAAFLEARSPEVQ-----ALIIGLTNWPWVARSVRAQTLSLKNRE 197
I++ +P LLIL+ + L P Q I+ W AR +R LS+K RE
Sbjct: 347 SEIIMSLPGFYLLILLRSLLPLDIPSTQVYVLLVFILSFIGWAGRARVIRGMVLSIKQRE 406
Query: 198 FVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSL 256
FV ++ +G D RI+F ++PN SY+ +A L + G IL A+L F+GLG S
Sbjct: 407 FVEAARALGFPDTRILFRHVLPNTASYLIVAATLAIPGYILGEASLSFLGLGIREPSASW 466
Query: 257 GVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLRG 308
G++L +A N + W + PG+ I + + + FV + + +PR G
Sbjct: 467 GLMLAQA--QNVTYMTKYPWLLIPGIFIFITVLSFNFVGDALRDALDPRSLG 516
>dbj|BAB04068.1| (AP001508) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 305
Score = 145 bits (361), Expect = 9e-34
Identities = 80/225 (35%), Positives = 129/225 (56%), Gaps = 9/225 (4%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H LGTD G+D+++ +VYG R SL + V A ++ +G+T+G+V+G+ GG +D M V
Sbjct: 82 HFLGTDHLGRDIWSRMVYGSRISLLVGVTAVVLAGLIGVTVGMVAGFYGGWLDTAFMRLV 141
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALI--IGLTNWPWVARSVRAQTLSLKNREFVNL 201
+ L IP+I+L +++ L P V LI +G+TNW AR VR + LS+K REFV
Sbjct: 142 DSFLSIPNILLALVI---LSVFGPGVWTLIFVLGVTNWVNYARLVRGEVLSIKEREFVKA 198
Query: 202 SKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVIL 260
++ +G+ + ++ ++PN++S + L V+ I+ A+L F+GLG +S G IL
Sbjct: 199 ARAIGVKNRMVMVRHLLPNVVSPFIVISTLSVATTIILEASLSFLGLGIQPPDISWGGIL 258
Query: 261 QKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
+ A WW PGL ITL + + F+ + +V +PR
Sbjct: 259 SDGRDYIATS---WWLATFPGLAITLTVLGIIFLGDWLRDVLDPR 300
>dbj|BAB03749.1| (AP001507) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 301
Score = 141 bits (352), Expect = 1e-32
Identities = 84/296 (28%), Positives = 153/296 (51%), Gaps = 35/296 (11%)
Query: 13 RNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENIT 72
+N G+ LI FF++ A+IGP FT YE P +K P
Sbjct: 35 KNKAAMVGLSLIIFFIVVALIGPYFTTHDP----YE-------PNVMNKLAEPSAE---- 79
Query: 73 IMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKG 132
H GTD G+D++ +++G+ +L++ + ++G +G+ +G+VSGY G
Sbjct: 80 -----------HWFGTDHHGRDIFTRIIHGMSITLYVGFFSVVLGAIVGVILGVVSGYYG 128
Query: 133 GIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLS 192
+VD ++M ++++L P I+L + + + L V + +G+ + P AR VR TL+
Sbjct: 129 RLVDTVIMRIMDVLLAFPGILLALAIISILGGSINNV-IIAVGIFSIPVFARIVRGSTLA 187
Query: 193 LKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PT 251
++ E+++ K +G SD RIIF+ I+PN++S I + G L ++ +IL ++ L F+GLG
Sbjct: 188 VRKLEYIDAVKALGASDARIIFKHILPNVLSPIIVQGTLSIATSILTASALSFLGLGAQP 247
Query: 252 TVVSLGVILQ--KAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
+ G +L + M++A + PGL I +++ A G+ + +P+
Sbjct: 248 PIPEWGAMLSDGRNYMYDAPHVALF-----PGLAIVVVVLAFNIFGDGLRDALDPK 298
>dbj|BAB07356.1| (AP001519) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 302
Score = 141 bits (351), Expect = 1e-32
Identities = 71/223 (31%), Positives = 131/223 (57%), Gaps = 2/223 (0%)
Query: 86 LGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNI 145
LGTD G+D++ +L+ G R S+ I +L ++ T+GI IGL+SGY GG +D + M V+
Sbjct: 79 LGTDYGGRDVFGQLIIGTRNSITIGLLVTLMSGTIGILIGLISGYYGGTIDNIFMRAVDF 138
Query: 146 MLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIV 205
+++P+++++I+ A + S +LI+ L W +AR +R++ L + ++V SK +
Sbjct: 139 FMILPNLMIIIVFVALVPKYSIVSFSLIMTLFLWMGIARMIRSKALRERELDYVQASKTL 198
Query: 206 GLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQKAI 264
G SDL+I+F +++PN+ S I + L ++ I + L F+G G P + SLG ++ A
Sbjct: 199 GSSDLKIMFTQVLPNLSSLIIVTMTLNLAANIGIESGLSFLGFGFPESTPSLGTLISYAT 258
Query: 265 MHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
L+ WW W +P ++I +++ ++ V ++ + R R
Sbjct: 259 NPQTLEHRWWIW-LPAAILIFVLMLSINNVGQALKRATDARQR 300
>sp|P26904|DPPC_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|98273|pir||S16649 dipeptide ABC transporter
(permease) - Bacillus subtilis
>gi|2632015|emb|CAA05574.1| (AJ002571) DppC [Bacillus
subtilis] >gi|2633648|emb|CAB13151.1| (Z99110) dipeptide
ABC transporter (permease) [Bacillus subtilis]
Length = 320
Score = 140 bits (350), Expect = 2e-32
Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 34/305 (11%)
Query: 6 DILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPP 65
D R +N G+ ++ F + A+IGP +P + + + + + LPP
Sbjct: 46 DAWRRLKKNKLAMAGLFILLFLFVMAVIGPFLSPHS-----------VVRQSLTEQNLPP 94
Query: 66 MTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIG 125
H GTD+ G+D++ YG R SL++ V+AA+I +G+ G
Sbjct: 95 SAD---------------HWFGTDELGRDVFTRTWYGARISLFVGVMAALIDFLIGVIYG 139
Query: 126 LVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGL--TNWPWVA 183
V+GYKGG +D ++M + ++ +P ++++IL+ + P + +I+ L T W +A
Sbjct: 140 GVAGYKGGRIDSIMMRIIEVLYGLPYLLVVILLMVLM---GPGLGTIIVALTVTGWVGMA 196
Query: 184 RSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATL 243
R VR Q L +KN E+V SK G RII + ++PN + I + L V AI A + L
Sbjct: 197 RIVRGQVLQIKNYEYVLASKTFGAKTFRIIRKNLLPNTMGAIIVQMTLTVPAAIFAESFL 256
Query: 244 DFIGLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVF 302
F+GLG S GV+ + + G WW P I+L + A + G+++
Sbjct: 257 SFLGLGIQAPFASWGVMANDGL--PTILSGHWWRLFFPAFFISLTMYAFNVLGDGLQDAL 314
Query: 303 NPRLR 307
+P+LR
Sbjct: 315 DPKLR 319
>emb|CAC16445.1| (AL450165) putative oligopeptide ABC transporter integral membrane
protein [Streptomyces coelicolor]
Length = 301
Score = 139 bits (348), Expect = 3e-32
Identities = 85/300 (28%), Positives = 151/300 (50%), Gaps = 25/300 (8%)
Query: 7 ILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPM 66
+LR RN + ++ +L A+ PL P+ D + ++ PA+
Sbjct: 22 VLRGLLRNKLAVLALAVLVLLLLAALFAPLIAPY--DPNAQNLLLRLRPPAWQDGG---- 75
Query: 67 TRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGL 126
H+LGTD+ G+D+ + +V+G R SL + AA++ +G +GL
Sbjct: 76 --------------SGAHLLGTDQLGRDMLSRVVHGTRVSLLVGAGAALLAGVIGTVVGL 121
Query: 127 VSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSV 186
SGY GG D LM ++ L PS++L + V FL V +++G T W AR V
Sbjct: 122 ASGYFGGWADRTLMRLADVQLAFPSLLLALAVVGFL-GSGLWVVIVVLGFTGWVSYARVV 180
Query: 187 RAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFI 246
R++ +SL+ R+FV ++ +G++D+ I+ ++PN+++ + G L V+ AI+A A+L ++
Sbjct: 181 RSEVMSLRTRDFVTEARAIGVTDVTIMRRHLLPNVMAPLATIGTLHVAAAIVAEASLSYL 240
Query: 247 GLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
GLG P V+ G +L ++ WW + PG+ + L A+ + +V +P+
Sbjct: 241 GLGVPKETVTWGGMLADGQLYLGTS---WWVAVFPGIALMLTSLAINITGDALRDVADPK 297
>gb|AAK41512.1| Oligo/dipeptide transport, permease protein (dppC-1) [Sulfolobus
solfataricus]
Length = 450
Score = 138 bits (345), Expect = 7e-32
Identities = 66/217 (30%), Positives = 117/217 (53%), Gaps = 1/217 (0%)
Query: 85 ILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVN 144
++GTD G+ L ++ GL +L I VL +++ +G+ +G +SGY GG D ++
Sbjct: 230 LMGTDYFGRPLDLGILLGLPNALEIGVLTSLVAVLVGVFVGGISGYLGGNKDSIIQWVTL 289
Query: 145 IMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKI 204
+ L +P++ L+ V+ F+ + ++AL+I +WP+ A R+ LS+K+ +V K+
Sbjct: 290 VFLALPALPFLVAVS-FVAEPNIVIEALLIAFLSWPFYAIIARSMALSIKSNSYVEADKL 348
Query: 205 VGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVILQKAI 264
+G+ R+ F MP +I +L V IL + TL F+G+ P +V+ G IL A
Sbjct: 349 LGIPSYRVFFTHFMPRLIPITVAYMVLGVPAGILLAQTLAFLGIAPANIVTWGGILDAAE 408
Query: 265 MHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEV 301
+ A GWWWW + PG ++ ++ + +E V
Sbjct: 409 TYQAQVNGWWWWVVFPGAMVVIVAIPFVLIGFAIERV 445
>pir||D72424 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980545|gb|AAD35153.1|AE001692_10 (AE001692)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 362
Score = 138 bits (345), Expect = 7e-32
Identities = 81/262 (30%), Positives = 142/262 (53%), Gaps = 9/262 (3%)
Query: 49 KVGKIELPAYSSKTLPPMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLW 108
K+ KI L + K T E+ + + G + + GTD+ G+D+++ ++YG R S
Sbjct: 101 KIYKIRLFVHGDKYKLWNTWES-DVHFFGVEEGTIFLFGTDRLGRDVFSRILYGARISTT 159
Query: 109 IAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPE 168
I ++ + LGI IG +SGY GG +D + + ++ IP+I L + +AA L +
Sbjct: 160 IGLVGVFLSMVLGIIIGGISGYYGGKIDNFIQRTIEFLISIPTIPLWMALAAALPRYWSQ 219
Query: 169 VQA-----LIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMIS 223
++ +I+ L W +AR VR++ LSLK+ +FV +++ G S+ RIIF+ ++P++ S
Sbjct: 220 IKVYFAITVILSLIGWTGLARVVRSKFLSLKDEDFVVAARLAGASEWRIIFKHMLPSLTS 279
Query: 224 YIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGL 282
++ + L + G IL L F+GLG +S GV+LQ+A N + W + PGL
Sbjct: 280 HLIASATLSIPGMILGETGLSFLGLGLRPPAISWGVLLQEA--QNIRTVALYPWLLIPGL 337
Query: 283 IITLIITALFFVNLGMEEVFNP 304
+ + + FV G+ + +P
Sbjct: 338 FVIITVLCFNFVGDGLRDAADP 359
>pir||E72720 probable oligopeptide transport system permease protein oppC
APE0302 - Aeropyrum pernix (strain K1)
>gi|5103941|dbj|BAA79257.1| (AP000059) 308aa long
hypothetical oligopeptide transport system permease
protein oppC [Aeropyrum pernix]
Length = 308
Score = 138 bits (344), Expect = 9e-32
Identities = 89/299 (29%), Positives = 150/299 (49%), Gaps = 27/299 (9%)
Query: 12 FRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENI 71
+ N + G+ +I+ F+L A+ PL P Y K+ K+ YSS+ LPP ++
Sbjct: 28 YSNPLSRMGLIIITGFILIAVAAPLLAPPNYPDPY--KIPKV----YSSEPLPPSSK--- 78
Query: 72 TIMYTGKTIEVLHILGTDKEGK--DLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSG 129
H GT D+Y +++G R SL I+++ + +G+ +G +S
Sbjct: 79 ------------HPFGTSGPPGYYDIYYGVIWGTRISLRISLIVVGVAVAIGVVVGSISA 126
Query: 130 YKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQ 189
Y GGI+D +LM + L +P ++L + +A+ +E RS + L + WP AR VRA+
Sbjct: 127 YFGGIIDNILMRITEVFLSLPGLILAMAIASMME-RSLQNMILALIAVWWPAYARIVRAE 185
Query: 190 TLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG 249
L +KN +V +KI+GL+ RII I+PN I + + + + +L ++ L F+GLG
Sbjct: 186 VLRVKNEPYVEAAKILGLNTYRIIARHILPNSIYTVLVIASMDLGLVVLVASGLGFLGLG 245
Query: 250 PTT-VVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
G+++ + N L G WW PG+ I L + + G+ +V +PR R
Sbjct: 246 AQPGTAEWGIMISEG--RNWLLQGAWWPVFFPGIAIFLWVLGWSLLGDGLRDVLDPRTR 302
>pir||S75778 oligopeptide transport system permease protein appC - Synechocystis
sp. (strain PCC 6803) >gi|1001269|dbj|BAA10513.1|
(D64003) oligopeptide transport system permease protein
[Synechocystis sp.]
Length = 371
Score = 137 bits (342), Expect = 2e-31
Identities = 94/275 (34%), Positives = 145/275 (52%), Gaps = 25/275 (9%)
Query: 51 GKIELPAYSS----KTLP--PMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLR 104
G+I+LP S + P P R I + GK L++LGTD++G+D ++ L++G R
Sbjct: 106 GQIKLPLPPSFAPVEIFPGIPGDRHLIGTLGPGK----LNLLGTDEQGRDQFSRLLFGGR 161
Query: 105 TSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEA 164
SL+I ++ I LG+ +G ++GY GG +D +LM V +++ IP I LL+ +AA L
Sbjct: 162 ISLFIGLIGITISFPLGMVVGGIAGYFGGWLDVVLMRLVEVLMTIPGIYLLVALAAVLPP 221
Query: 165 RSPEVQ-----ALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMP 219
Q +I +W +AR +R Q LSLK +E+V +K +G RII I+P
Sbjct: 222 GLSSAQRFLLIVVITSFISWSGLARVIRGQVLSLKQQEYVQAAKAMGAGAPRIIVRHILP 281
Query: 220 NMISYIFMAGILQVSGAILASATLDFIGLG-----PTTVVSLGVILQKAIMHNALQFGWW 274
SYI ++ L V G I+A + L IGLG P+ L + +I+ LQ W
Sbjct: 282 QTASYIIISATLAVPGFIVAESVLSLIGLGIQQPDPSWGNLLSIATNASIL--VLQ-PWL 338
Query: 275 WWFIPPGLIITLIITALFFVNLGMEEVFNPRLRGE 309
W PP ++I L + A + G+ + +PR GE
Sbjct: 339 VW--PPAVLIILTVLAFNLLGDGLRDALDPRSLGE 371
>gi|11499358 dipeptide ABC transporter, permease protein (dppC) [Archaeoglobus
fulgidus] >gi|7442417|pir||H69470 dipeptide ABC
transporter, permease protein (dppC) homolog -
Archaeoglobus fulgidus >gi|2648779|gb|AAB89481.1|
(AE000980) dipeptide ABC transporter, permease protein
(dppC) [Archaeoglobus fulgidus]
Length = 286
Score = 136 bits (338), Expect = 4e-31
Identities = 80/227 (35%), Positives = 123/227 (53%), Gaps = 12/227 (5%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
HI+GTD G+D+++ +V+G R L + + A+++ T +G+ +GL+SGY GG +D LL M +
Sbjct: 64 HIMGTDNLGRDVFSRIVFGSRVVLAVVLSASLVSTVIGVPLGLISGYFGGKLDRLLSMLM 123
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEV--QALIIGLTNWPWVARSVRAQTLSLKNREFVNL 201
+ M P ++L I +AA L P V + I + P R +R QTLS+K+ FV
Sbjct: 124 DSMYAFPGLILAIAIAAVL---GPSVFNAVVAISVVYVPTYFRMIRGQTLSVKSLLFVEA 180
Query: 202 SKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGL---GPTTVVSLGV 258
+K G SD RI+ + I PN+I + + L V+ AIL A L F+G PT
Sbjct: 181 AKAAGASDWRIMRKYIFPNLIPTLVVVFSLSVADAILTEAGLSFLGFIVSAPTPDWG--- 237
Query: 259 ILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
+ A L G+WW PGL++ L+ V G+ E++ PR
Sbjct: 238 -FELASGRPYLPAGYWWMITFPGLMVMLLSLGFALVGEGLSEIYAPR 283
>sp|P51000|DPPC_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|972896|gb|AAA95973.1| (U17295) DppC [Haemophilus
influenzae] >gi|1574113|gb|AAC22839.1| (U32798)
dipeptide ABC transporter, permease protein (dppC)
[Haemophilus influenzae Rd]
Length = 295
Score = 135 bits (337), Expect = 6e-31
Identities = 92/294 (31%), Positives = 153/294 (51%), Gaps = 35/294 (11%)
Query: 21 IGLISFFV--LFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKT---LPPMTRENITIMY 75
IGLI + L +I+ P PF P ++T LPP E Y
Sbjct: 29 IGLIFILIVALISILAPYIAPFD--------------PTEQNRTALLLPPAWYEGGNPAY 74
Query: 76 TGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIV 135
+LGTD G+D+ + ++YG R S++ + ++ G ++GL+SGY GG++
Sbjct: 75 ---------LLGTDDIGRDILSRIIYGTRISVFAGFIIVLLSCAFGTSLGLISGYYGGVL 125
Query: 136 DELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKN 195
D +++ ++IML IP+++L I+V + LE S L I + + P R RA ++ KN
Sbjct: 126 DTIIIRLIDIMLAIPNLLLTIVVVSILEP-SLANATLAIAVVSIPSYVRLTRAAMMNEKN 184
Query: 196 REFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG--PTTV 253
R++V SK+ G LR++F I+PN ++ + + + +S AIL ATL F+G+G P T
Sbjct: 185 RDYVTSSKVAGAGILRLMFIVILPNCLAPLIVQMTMGISNAILELATLGFLGIGAKPPT- 243
Query: 254 VSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
LG +L +A +Q W I PGL+I ++ A + G+ + +P+L+
Sbjct: 244 PELGTMLSEA--RGFMQAANWLVTI-PGLVILSLVLAFNLMGDGLRDALDPKLK 294
>pir||D72300 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981606|gb|AAD36140.1|AE001766_6 (AE001766)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 367
Score = 135 bits (337), Expect = 6e-31
Identities = 75/228 (32%), Positives = 127/228 (54%), Gaps = 8/228 (3%)
Query: 83 LHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMF 142
+ +LGTD G+D+ + ++YG R S I ++ + LG+ IG +SGY GG VD +
Sbjct: 138 MFLLGTDSLGRDMLSRIIYGARISTSIGLIGVFLSFILGVAIGGISGYFGGAVDNFIQRT 197
Query: 143 VNIMLVIPSIVLLILVAAFLEARSPEVQA-----LIIGLTNWPWVARSVRAQTLSLKNRE 197
+ I+ IP+I L + ++A L P ++ +I+ LT W +AR VR++ LSL+ +
Sbjct: 198 IEIIKSIPTIPLWLALSAALPQNWPPLRVYFVIVIILSLTGWTDLARVVRSRFLSLREED 257
Query: 198 FVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSL 256
FV +K +G S+ RIIF ++P+ +S++ + L + G IL +L F+GLG V+S
Sbjct: 258 FVMAAKFMGASEARIIFRHMLPSFMSHLIASITLSIPGMILGETSLSFLGLGLRPPVISW 317
Query: 257 GVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNP 304
GV+LQ+A N + W + P + + + FV G+ + +P
Sbjct: 318 GVLLQEA--QNLTVVALYPWLLIPVVFVITTVLCFNFVGDGLRDAADP 363
>emb|CAA40004.1| (X56678) dciAC [Bacillus subtilis]
Length = 320
Score = 134 bits (335), Expect = 1e-30
Identities = 87/305 (28%), Positives = 147/305 (47%), Gaps = 34/305 (11%)
Query: 6 DILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPP 65
D R +N G+ ++ F + A+IGP +P + + + + + LPP
Sbjct: 46 DAWRRLKKNKLAMAGLFILLFLFVMAVIGPFLSPHS-----------VVRQSLTEQNLPP 94
Query: 66 MTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIG 125
H GTD+ G+D++ YG R SL++ V+AA+I +G+ G
Sbjct: 95 SAD---------------HWFGTDELGRDVFTRTWYGARISLFVGVMAALIDFLIGVIYG 139
Query: 126 LVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGL--TNWPWVA 183
V+GYKGG +D ++M + ++ +P ++++IL+ + P + +I+ L T W +A
Sbjct: 140 GVAGYKGGRIDSIMMRIIEVLYGLPYLLVVILLMVLM---GPGLGTIIVALTVTGWVGMA 196
Query: 184 RSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATL 243
R VR Q L +KN E+V SK G RII + ++ N + I + L V AI A + L
Sbjct: 197 RIVRGQVLQIKNYEYVLASKTFGAKTFRIIRKNLLRNTMGAIIVQMTLTVPAAIFAESFL 256
Query: 244 DFIGLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVF 302
F+GLG S GV+ + + G WW P I+ + A + G+++
Sbjct: 257 SFLGLGIQAPFASWGVMANDGL--PTILSGHWWRLFFPAFFISSTMYAFNVLGDGLQDAL 314
Query: 303 NPRLR 307
+P+LR
Sbjct: 315 DPKLR 319
>gb|AAC64254.1| (AF042861) putative OppC [Treponema denticola]
Length = 338
Score = 133 bits (332), Expect = 2e-30
Identities = 82/307 (26%), Positives = 153/307 (49%), Gaps = 29/307 (9%)
Query: 5 ADILRLAFRNNKFKF-GIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTL 63
A +R+ FRNN+ G + VL ++ +T F G + K + K
Sbjct: 20 AQQIRIKFRNNRLAMMGFYMFVTIVLLVVVTHFYTKFT--GYDFAKTDP------TIKNN 71
Query: 64 PPMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGIT 123
PP +H GTDK G+D + ++ G SL + L+ + T+G+T
Sbjct: 72 PPSW---------------IHPFGTDKYGRDTFMRVLEGGWISLQVGFLSTFMAVTIGLT 116
Query: 124 IGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPE----VQALIIGLTNW 179
+G V+G+ GG VD ++M + I+ P + + ++A R PE V +I+GL +W
Sbjct: 117 MGSVAGFFGGRVDNIIMRLIEILSSFPFLAIAYTLSAIFRERPPEFRLYVIVIILGLLSW 176
Query: 180 PWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILA 239
+AR +R Q L+L+ +EF+ ++ +G+ IF ++PN+++ + ++ L + +IL+
Sbjct: 177 TGLARLIRGQILALREQEFIVATRALGIKRRNQIFRHLVPNVLATVVVSATLTFASSILS 236
Query: 240 SATLDFIGLGPT-TVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGM 298
A L F+ L T + + G +L KA ++ +WW +I PG ++ I ++ + G+
Sbjct: 237 EAFLSFLNLSVTEPIPTWGALLSKASENSTSLRTFWWIWIFPGAMLFFFIMSINLIGEGL 296
Query: 299 EEVFNPR 305
+ +P+
Sbjct: 297 RDSIDPK 303
>pir||D70431 oligopeptide transport system permease - Aquifex aeolicus
>gi|2983881|gb|AAC07433.1| (AE000743) oligopeptide
transport system permease [Aquifex aeolicus]
Length = 331
Score = 133 bits (331), Expect = 3e-30
Identities = 102/308 (33%), Positives = 155/308 (50%), Gaps = 44/308 (14%)
Query: 21 IGLISFFVLFAIIGPLFTPFASD------------GLYYEKVGKIELPAYSSK-----TL 63
IGLI F + FA F P+ + +++ K GK+ P Y +K +L
Sbjct: 11 IGLILFLITFA---DFFAPYPYELQNRNAPYHPPTRIHFFKDGKLTFP-YVNKYELVDSL 66
Query: 64 PPMTRENITIM----------YTGKTIEV-----LHILGTDKEGKDLYAELVYGLRTSLW 108
+ REN I Y K + V L++LGTDK G+D+++ L+YG R SL
Sbjct: 67 FKVYRENKNISCRLKFFTKTEYGFKFVSVGKPCNLYLLGTDKLGRDVFSRLLYGGRYSLG 126
Query: 109 IAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAF--LEARS 166
+A++ +G +G +SGY GG VD L+M V I++ IP+ LL+ + + LE S
Sbjct: 127 VALIGTFTTFFIGALVGGISGYFGGKVDTLIMRLVEILMSIPAFYLLLSLRSVFPLELSS 186
Query: 167 PEVQALII---GLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMIS 223
EV +I+ W +AR VR LS++ +EFV +K G S LRIIF+ I+PN
Sbjct: 187 GEVFLIIVFILSFLGWAGLARVVRGMVLSIREKEFVLAAKTYGASSLRIIFKHILPNTYF 246
Query: 224 YIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGL 282
Y+ ++ + + IL A+L +GLG V S G +L + + N ++ W PG+
Sbjct: 247 YLIVSATMSIPAFILGEASLSLLGLGIQEPVPSWGNMLSE--VRNVSVLTFYPWLASPGV 304
Query: 283 IITLIITA 290
I L I A
Sbjct: 305 AIFLTILA 312
>sp|P37315|DPPC_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|1073368|pir||S47764 dipeptide transport system
permease protein dppC - Escherichia coli
>gi|349227|gb|AAA23704.1| (L08399) transmembrane protein
[Escherichia coli] >gi|466681|gb|AAB18520.1| (U00039)
dppC [Escherichia coli] >gi|1789964|gb|AAC76567.1|
(AE000431) dipeptide transport system permease protein 2
[Escherichia coli K12]
Length = 300
Score = 132 bits (329), Expect = 5e-30
Identities = 82/231 (35%), Positives = 126/231 (54%), Gaps = 17/231 (7%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H+LGTD G+D+ + L+YG R SL + L ++ +G+ +GL++GY GG+VD ++M V
Sbjct: 79 HLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVV 138
Query: 144 NIMLVIPSIVL-LILVAAFLEARSPEV--QALIIGLTNWPWVARSVRAQTLSLKNREFVN 200
+IML +PS++L L+LVA F P + AL + P R RA L NR++V
Sbjct: 139 DIMLALPSLLLALVLVAIF----GPSIGNAALALTFVALPHYVRLTRAAVLVEVNRDYVT 194
Query: 201 LSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG--PTTVVSLGV 258
S++ G +R +F I PN ++ + + L S AIL A L F+G+G P T G
Sbjct: 195 ASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPT-PEWGT 253
Query: 259 ILQKAIMHNALQFGW--WWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
+L + LQF WW PGL I L + A + G+ + +P+L+
Sbjct: 254 MLS-----DVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLK 299
>sp|P45053|OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|1075086|pir||D64184 oligopeptide transport system
permease protein oppC - Haemophilus influenzae (strain
Rd KW20) >gi|1574677|gb|AAC22776.1| (U32792)
oligopeptide ABC transporter, permease protein (oppC)
[Haemophilus influenzae Rd]
Length = 311
Score = 132 bits (329), Expect = 5e-30
Identities = 90/303 (29%), Positives = 140/303 (45%), Gaps = 29/303 (9%)
Query: 6 DILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPP 65
D R FRN + +++F ++F + P F PF YE
Sbjct: 37 DAKRRFFRNKAAVASLIILAFIIIFITVAPWFFPFT-----YEDT--------------- 76
Query: 66 MTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIG 125
+ +M T+E H GTD G+DL G R SL + + A I T+G G
Sbjct: 77 ----DWNMMSAAPTMEGYHFFGTDASGRDLLVRTAIGGRISLLVGIAGAFISVTIGTIYG 132
Query: 126 LVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARS 185
+SGY GG D L+M F+ I+ P + +IL+ L ++ + + IG W +AR
Sbjct: 133 AISGYVGGKTDMLMMRFLEILSSFPFMFFVILLVT-LFGQNIFLIFIAIGAIAWLGLARI 191
Query: 186 VRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDF 245
VR QTLSLKN+EFV + + G+ +II + I+PN++ + + L+V G IL + L F
Sbjct: 192 VRGQTLSLKNKEFVEAAIVCGVPRRQIILKHIIPNVLGLVAVYASLEVPGLILFESFLSF 251
Query: 246 IGLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNP 304
+GLG + S G +L + W I P + L + F+ G+ + +P
Sbjct: 252 LGLGTQEPMSSWGALLSDGAAQMEVS---PWLLIFPAFFLCLTLFCFNFIGDGLRDALDP 308
Query: 305 RLR 307
+ R
Sbjct: 309 KDR 311
>pir||A75381 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6459332|gb|AAF11131.1|AE002000_7
(AE002000) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 376
Score = 132 bits (329), Expect = 5e-30
Identities = 79/231 (34%), Positives = 128/231 (55%), Gaps = 6/231 (2%)
Query: 83 LHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMF 142
L++LG+D G+D ++ ++YG + SL I ++A+++ LG+ +G ++GY G+ D L+M
Sbjct: 145 LYLLGSDNFGRDQFSRIMYGSQISLTIGIIASLLSLVLGLVLGGIAGYFRGLADTLIMRL 204
Query: 143 VNIMLVIPSIVLLILVAAF--LEARSPEVQALIIGL---TNWPWVARSVRAQTLSLKNRE 197
V ++ IP + LLIL+ A LEA V ++ GL W +AR VR Q LS + +
Sbjct: 205 VEVLSAIPDLFLLILLRAMFPLEANPILVFYIVGGLLAFIGWGGIARVVRGQILSGREMD 264
Query: 198 FVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSL 256
+V + +G SD RII + ++PN ++I +A L + G IL + L FIG+G S
Sbjct: 265 YVQAANALGASDARIIGQHLLPNSATFIIVAMSLAIPGYILTESGLSFIGIGIVEPYASW 324
Query: 257 GVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
G +L+ A W + PG+ I L + FV G+ + F+PR R
Sbjct: 325 GSLLKLAQDGGFESLDTRPWVLLPGVFIMLAVLGWQFVGDGLRDAFDPRRR 375
>sp|Q10623|YC82_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN RV1282C
>gi|7442464|pir||D70729 probable peptide transport
system permease - Mycobacterium tuberculosis (strain
H37RV) >gi|3261616|emb|CAB01002.1| (Z77164) oppC
[Mycobacterium tuberculosis]
Length = 291
Score = 132 bits (328), Expect = 7e-30
Identities = 81/254 (31%), Positives = 135/254 (52%), Gaps = 7/254 (2%)
Query: 57 AYSSKTLPPMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAII 116
AY+ L P + +++ + H LGT+ G+DL A+ + G++ S+ I V A+I
Sbjct: 35 AYALPPLLPYSYDDLDFNALLQPPGTKHWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVI 94
Query: 117 GTTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGL 176
T + T+G +SGY GG D LM V+++LV+PS +L+ +V + S + L++ L
Sbjct: 95 STGIAATVGAISGYFGGWRDRTLMWVVDLLLVVPSFILIAIVTPRTK-NSANIMFLVLLL 153
Query: 177 TNWPWV--ARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVS 234
+ W+ +R VR T+SL+ REF+ ++ +G+S RII ++PN+ S + + L V+
Sbjct: 154 AGFGWMISSRMVRGMTMSLREREFIRAARYMGVSSRRIIVGHVVPNVASILIIDAALNVA 213
Query: 235 GAILASATLDFIGLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFF 293
AILA L F+G G VSLG ++ A + W F+ P I+ LI+
Sbjct: 214 AAILAETGLSFLGFGIQPPDVSLGTLIADG---TASATAFPWVFLFPASILVLILVCANL 270
Query: 294 VNLGMEEVFNPRLR 307
G+ + +P R
Sbjct: 271 TGDGLRDALDPASR 284
>pir||A75118 dipeptide abc transporter, permease protein (dppc) PAB1873 -
Pyrococcus abyssi (strain Orsay)
>gi|5458169|emb|CAB49658.1| (AJ248285) dipeptide ABC
transporter, permease protein (dppC) [Pyrococcus abyssi]
Length = 387
Score = 131 bits (326), Expect = 1e-29
Identities = 88/319 (27%), Positives = 146/319 (45%), Gaps = 41/319 (12%)
Query: 20 GIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYTGKT 79
G+ ++ F+L I GP P+ Y + Y + L P + + Y T
Sbjct: 59 GLFIVIIFILVGIFGPFLAPWK-----YNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNAT 113
Query: 80 IEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELL 139
I + LG D G+DL + L+ G RTS I+++ + G LGI +GLV+GY GG VDEL+
Sbjct: 114 I--YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
Query: 140 MMFVNIMLVIPSIVLLILVAAFLEAR-------SPEVQALIIGLTN-------------- 178
M ++ L P+++L I +A L R P ++ +++ +
Sbjct: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
Query: 179 ---------WPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAG 229
WP AR R TL+ + + +V ++ +GL I+F I+PN+I I +
Sbjct: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYI 291
Query: 230 ILQVSGAILASATLDFIGLGPTTVVSLGVILQKAIMHNALQFGWWWWFI-PPGLIITLII 288
L G +L A L F+GLG T ++ + + A F WW + PGL++ L
Sbjct: 292 TLDFGGVVLMEAGLSFLGLGATPPIA---DWGRIVYDGAQYFPRCWWLVFYPGLVVLLTA 348
Query: 289 TALFFVNLGMEEVFNPRLR 307
+ G+ ++ +P+ R
Sbjct: 349 LGWNLLGDGLRDILDPKTR 367
>gb|AAG09259.1| (AF176664) EppC [EDTA-degrading bacterium BNC1]
Length = 308
Score = 131 bits (326), Expect = 1e-29
Identities = 84/231 (36%), Positives = 128/231 (55%), Gaps = 18/231 (7%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H GTD G DL A ++ G + SL IA A++ T +G G V+GY GG D LLM V
Sbjct: 83 HPFGTDHLGYDLMAGVMRGTQRSLSIAGTVAVLATLIGSIWGAVAGYVGGWADSLLMRIV 142
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQ------ALIIGLTNWPWVARSVRAQTLSLKNRE 197
+++++ P L+ VAAFL +S + AL++ +W +AR VR+ LSL+ RE
Sbjct: 143 DLIMIFP----LLAVAAFLARQSQGGEHGWLLVALVLATLSWTVLARVVRSVVLSLRTRE 198
Query: 198 FVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG---PTTVV 254
FV +KI G +RIIF ++PN + I +A + V+ AIL+ L ++G G P T
Sbjct: 199 FVIAAKIAGAGPVRIIFRHLLPNTVGPIIVAATVLVASAILSETALSYLGFGVQPPDT-- 256
Query: 255 SLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
SLG+++ +A A+ W ++ PGL I LI + F+ G+ +P+
Sbjct: 257 SLGLLINQA--QGAISTRPWLFYF-PGLFIILIALCVAFIGDGLRAALDPK 304
>gb|AAK43158.1| Maltose ABC transporter, permease [Sulfolobus solfataricus]
Length = 323
Score = 131 bits (325), Expect = 1e-29
Identities = 87/311 (27%), Positives = 153/311 (48%), Gaps = 40/311 (12%)
Query: 8 LRLAFRNNKFKFGIGLISFFVLFAI--IGPLFTPFASDGLYYEKVGKIELPAYSSKTLPP 65
+R A NNKF G++ V FAI +G +TP+ + +LPP
Sbjct: 10 IRKALFNNKFILA-GIVIILVDFAIGIVGAFWTPYPVSETF-------------GISLPP 55
Query: 66 MTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIG 125
+ HILGTD+ G D+ + ++ TSL + + + + IG
Sbjct: 56 SS---------------AHILGTDEFGHDVLSVMMASTLTSLIVGISVGALIAIISTLIG 100
Query: 126 LVSGYKGGIVDELLMMFVNI-MLVIPSIVLLILVAAFLEARSPEVQ------ALIIGL-- 176
L GY GG + +++ + I L IP ++LL+++ A+ A S + ++IGL
Sbjct: 101 LFGGYYGGKISGVIIDILTITALTIPGVILLVIIEAYFRAASSTINITLSYIIVVIGLAI 160
Query: 177 TNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGA 236
T+W + A+ +RAQ LS+ R+++ S+++G RIIF +I+P+++ + V
Sbjct: 161 TSWAFGAKQIRAQVLSISKRDYIIASRLIGEKSWRIIFNQILPSILPLTVAQFLFGVLYG 220
Query: 237 ILASATLDFIGLGPTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNL 296
IL+ T +F G+ PT + +LG +L + A WWW + + I ++ L +N+
Sbjct: 221 ILSLITAEFWGVLPTNINNLGTMLFFISSNGAYLSNQWWWILGAIIPIMVLGAGLGILNI 280
Query: 297 GMEEVFNPRLR 307
G++E +PRL+
Sbjct: 281 GIDEFIDPRLK 291
>pir||C75573 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6460716|gb|AAF12421.1|AE001863_46
(AE001863) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 369
Score = 131 bits (325), Expect = 1e-29
Identities = 74/240 (30%), Positives = 128/240 (52%), Gaps = 10/240 (4%)
Query: 75 YTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGI 134
Y K + GTD+ G+DL++ + G + S+ + V+ +I LGI +G VSGY GG
Sbjct: 133 YGEKVPRYFFLFGTDQLGRDLFSRTLVGAQVSMTVGVVGVLISFALGILLGGVSGYFGGW 192
Query: 135 VDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQ-----ALIIGLTNWPWVARSVRAQ 189
VD L+ V ++L P + +L+ +A + AR P ++ L W +AR VR Q
Sbjct: 193 VDTLIQRVVEVLLSFPRLPILLALATLIPARWPSTWVYTGIVAVLALIGWASLARVVRGQ 252
Query: 190 TLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG 249
L+ +N ++V+ ++ +G S+LR+I I PN+ S++ + L + G IL +TL F+GLG
Sbjct: 253 VLAARNLDYVSAAQAMGASNLRVILRHITPNLSSFLLVTATLALPGYILGESTLSFLGLG 312
Query: 250 -PTTVVSLGVILQKAI-MHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
+ S G++L+ A + + W W PGL + + + A F+ + + + + R
Sbjct: 313 IKEPMTSWGLLLRDASKLEVVSSYPWLLW---PGLFVFISVLAFNFMGDALRDAADTQSR 369
>gi|10954709 hypothetical ABC-transporter gene~similar to dppC gene
[Agrobacterium rhizogenes] >gi|8918709|dbj|BAA97774.1|
(AB039932) hypothetical ABC-transporter gene~similar to
dppC gene [Agrobacterium rhizogenes]
>gi|10567373|dbj|BAB16182.1| (AP002086) hypothetical
ABC-transporter gene~similar to dppC gene [Agrobacterium
rhizogenes]
Length = 305
Score = 131 bits (325), Expect = 1e-29
Identities = 89/297 (29%), Positives = 147/297 (48%), Gaps = 27/297 (9%)
Query: 16 KFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMY 75
+ F IGLI F +L + + PF S V +++ AYS K +PP E Y
Sbjct: 32 RLDFRIGLIGFGLLLGLA--ILLPFISS------VDPLKM-AYSHKFIPPFPSEGWQWPY 82
Query: 76 TGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIV 135
+LGTD+ G+D+ + GL SL+I V I+ +G ++GL++G++GG +
Sbjct: 83 ---------VLGTDQLGRDVLMRCLVGLCYSLFIGVTTVILMFIVGCSLGLLAGFRGGWL 133
Query: 136 DELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKN 195
D ++M + L IP I+L I + P + L++GL+ WP AR R+ L +N
Sbjct: 134 DTVIMRLTDAQLSIPMIILAITILGVSRPTVPAI-ILVLGLSGWPLYARVARSVALGERN 192
Query: 196 REFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG---PTT 252
R +V +++G SDLRI+ + P ++ I +L ++ ++ + L F+GLG PT
Sbjct: 193 RGYVLGERVLGASDLRIMLLFVAPVVLPPIAFVAVLDIARMMIFESILGFLGLGVQPPTP 252
Query: 253 VVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLRGE 309
+ + + NA WW PGL + + +T L + +E N LRG+
Sbjct: 253 TFGNVIADSRKYLLNA-----WWIATMPGLFMLISLTCLNLMGSALERARNAVLRGD 304
>pir||D70141 oligopeptide ABC transporter, permease protein (oppC-1) homolog -
Lyme disease spirochete >gi|2688244|gb|AAC66723.1|
(AE001140) oligopeptide ABC transporter, permease
protein (oppC-1) [Borrelia burgdorferi]
Length = 349
Score = 130 bits (324), Expect = 2e-29
Identities = 89/328 (27%), Positives = 165/328 (50%), Gaps = 38/328 (11%)
Query: 12 FRNNKFKFG-IGLISFFVLFAIIGPLFTPF-----------------ASDGLYYEKVGKI 53
F+ NK FG + +I F++ AI+ P+ + A+ L+Y K K
Sbjct: 23 FKENKLAFGSLFVIGFYISIAILQPILPIYKYHTQIVEHSDLPPSFQAAGELWYNKEKKF 82
Query: 54 ----------ELPAYSSKTLPPMTR--ENITIMYTGKTIEV---LHILGTDKEGKDLYAE 98
E+ K L + R EN + K +++ +++LGTD G+DL A
Sbjct: 83 IEKLAKKEKREINEEELKKLEDIKRKIENEVQIIDKKEVKIHKRVYLLGTDNLGRDLLAR 142
Query: 99 LVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILV 158
L+ G + SL + + A + +G +G ++G+ GG+ D+++ + I+ +P ++++I++
Sbjct: 143 LIQGSQISLSVGFIGAFLSMIIGTILGSIAGFFGGLPDKIITKTIEILYALPYLLIVIIL 202
Query: 159 AAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIM 218
A +E RS + + +W VAR VR Q SL + EF+ +K +G ++ RII + ++
Sbjct: 203 MAIME-RSIIGLFIALAFVSWLTVARVVRGQVQSLSSSEFIQAAKTLGATNQRIILKHLI 261
Query: 219 PNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQKAIMHNALQFGWWWWF 277
PN I I + ++V I+A A L F+GLG + S G ++Q I A + W
Sbjct: 262 PNSIGMIVIFTTIRVPSFIMAEAFLSFLGLGISAPMTSWGELVQNGI---ATFVEYPWKV 318
Query: 278 IPPGLIITLIITALFFVNLGMEEVFNPR 305
P +++T+ + + F+ G+ + F+P+
Sbjct: 319 FIPAIVMTIFLLFMNFLGDGLRDAFDPK 346
>pir||T44599 oligopeptide transport system permease protein [imported] -
Rhizobium meliloti megaplasmid 2 (fragment)
>gi|4929437|gb|AAD33993.1|AF148072_1 (AF148072)
oligopeptide transport system permease protein
[Sinorhizobium meliloti]
Length = 289
Score = 129 bits (322), Expect = 3e-29
Identities = 74/228 (32%), Positives = 131/228 (57%), Gaps = 8/228 (3%)
Query: 83 LHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMF 142
L +LGTD+ G+D+ + ++YG R SL I +L + LGI IG ++GY GGI D ++
Sbjct: 62 LFLLGTDRLGRDVLSRIIYGARISLTIGLLGITVSFVLGIVIGGLAGYHGGIFDLVVQRL 121
Query: 143 VNIMLVIPSIVLLILVAAFLEAR-SPEVQAL----IIGLTNWPWVARSVRAQTLSLKNRE 197
+ ++ IPSI L + +AA + A SP + L I+GL +W +AR+VR++ L+L+ +
Sbjct: 122 IEVLQSIPSIPLWLSLAAIMPATWSPLLIYLGITVILGLLDWTGLARAVRSKLLALREED 181
Query: 198 FVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSL 256
+V ++++G RII ++P +S++ + + G IL L F+GLG + S
Sbjct: 182 YVLAAQLMGARSGRIIGRHLVPGFMSHLIATATISIPGMILGETALSFLGLGLRPPITSW 241
Query: 257 GVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNP 304
G++L +A + + F + W + P + + L+I A F+ G+ + +P
Sbjct: 242 GILLTEAKSVSVIAF--YPWLLFPTIPVILVILAFNFLGDGLRDAADP 287
>sp|P24139|OPPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|7442409|pir||A69669 oligopeptide ABC transporter
(permease) oppC - Bacillus subtilis
>gi|40007|emb|CAA39789.1| (X56347) OppC [Bacillus
subtilis] >gi|2633499|emb|CAB13002.1| (Z99110)
oligopeptide ABC transporter (permease) [Bacillus
subtilis]
Length = 305
Score = 129 bits (321), Expect = 4e-29
Identities = 89/300 (29%), Positives = 147/300 (48%), Gaps = 32/300 (10%)
Query: 10 LAFRNNKFKF-GIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTR 68
L FR+NK G+ +I +L AI P+F+ + YS+ L
Sbjct: 35 LRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYD----------------YSTTNL----- 73
Query: 69 ENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVS 128
+ K H GTD G+D++ G R S++I V AA++ +G+ G +S
Sbjct: 74 -----LNADKPPSKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSIS 128
Query: 129 GYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRA 188
G++GG DE++M +I+ +PS++++IL+ L + + + +T W +AR VR
Sbjct: 129 GFRGGRTDEIMMRIADILWAVPSLLMVILLMVVL-PKGLFTIIIAMTITGWINMARIVRG 187
Query: 189 QTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGL 248
Q L LKN+E+V S+ +G R++F+ I+PN + I + L V AI A L ++GL
Sbjct: 188 QVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEAFLSYLGL 247
Query: 249 G-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
G P + S G + + AL + W F P G I + + V G+ + +P+LR
Sbjct: 248 GVPAPLASWGTMASDGL--PALTYYPWRLFFPAG-FICITMFGFNVVGDGLRDALDPKLR 304
>pir||C38447 sporulation initiation protein spo0KC - Bacillus subtilis
>gi|143606|gb|AAA62690.1| (M57689) sporulation protein
[Bacillus subtilis]
Length = 305
Score = 129 bits (321), Expect = 4e-29
Identities = 89/300 (29%), Positives = 147/300 (48%), Gaps = 32/300 (10%)
Query: 10 LAFRNNKFKF-GIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTR 68
L FR+NK G+ +I +L AI P+F+ + YS+ L
Sbjct: 35 LPFRSNKLAMVGLIIIVLIILMAIFAPMFSRYD----------------YSTTNL----- 73
Query: 69 ENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVS 128
+ K H GTD G+D++ G R S++I V AA++ +G+ G +S
Sbjct: 74 -----LNADKPPSKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSIS 128
Query: 129 GYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRA 188
G++GG DE++M +I+ +PS++++IL+ L + + + +T W +AR VR
Sbjct: 129 GFRGGRTDEIMMRIADILWAVPSLLMVILLMVVL-PKGLFTIIIAMTITGWINMARIVRG 187
Query: 189 QTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGL 248
Q L LKN+E+V S+ +G R++F+ I+PN + I + L V AI A L ++GL
Sbjct: 188 QVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEAFLSYLGL 247
Query: 249 G-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
G P + S G + + AL + W F P G I + + V G+ + +P+LR
Sbjct: 248 GVPAPLASWGTMASDGL--PALTYYPWRLFFPAG-FICITMFGFNVVGDGLRDALDPKLR 304
>gb|AAC46286.1| (AF000366) oligopeptide permease homolog C [Borrelia burgdorferi]
Length = 349
Score = 129 bits (320), Expect = 6e-29
Identities = 88/328 (26%), Positives = 164/328 (49%), Gaps = 38/328 (11%)
Query: 12 FRNNKFKFG-IGLISFFVLFAIIGPLFTPF-----------------ASDGLYYEKVGKI 53
F+ NK FG + +I F++ AI+ P+ + A+ L+Y K K
Sbjct: 23 FKENKLAFGSLFVIGFYISIAILQPILPIYKYHTQIVEHSDLPPSFQAAGELWYNKEKKF 82
Query: 54 ----------ELPAYSSKTLPPMTR--ENITIMYTGKTIEV---LHILGTDKEGKDLYAE 98
E+ K L + R EN + K +++ +++LGTD G+DL
Sbjct: 83 IEKLAKKEKREINEEELKKLEDIKRKIENEVQIIDKKEVKIHKRVYLLGTDNLGRDLLVR 142
Query: 99 LVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILV 158
L+ G + SL + + A + +G +G ++G+ GG+ D+++ + I+ +P ++++I++
Sbjct: 143 LIQGSQISLSVGFIGAFLSMIIGTILGSIAGFFGGLPDKIITKTIEILYALPYLLIVIIL 202
Query: 159 AAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIM 218
A +E RS + + +W VAR VR Q SL + EF+ +K +G ++ RII + ++
Sbjct: 203 MAIME-RSIIGLFIALAFVSWLTVARVVRGQVQSLSSSEFIQAAKTLGATNQRIILKHLI 261
Query: 219 PNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQKAIMHNALQFGWWWWF 277
PN I I + ++V I+A A L F+GLG + S G ++Q I A + W
Sbjct: 262 PNSIGMIVIFTTIRVPSFIMAEAFLSFLGLGISAPMTSWGELVQNGI---ATFVEYPWKV 318
Query: 278 IPPGLIITLIITALFFVNLGMEEVFNPR 305
P +++T+ + + F+ G+ + F+P+
Sbjct: 319 FIPAIVMTIFLLFMNFLGDGLRDAFDPK 346
>gb|AAC67219.1| (U78968) transmembrane transport protein DppC [Streptococcus
pyogenes]
Length = 274
Score = 129 bits (320), Expect = 6e-29
Identities = 66/223 (29%), Positives = 124/223 (55%), Gaps = 4/223 (1%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H GTD G+D++ + GL SL + +L A++G G+++G ++D+++ V
Sbjct: 51 HFFGTDGLGRDMFVRTIKGLYFSLQVGLLGALMGVFFATVFGVLAGLGNSLIDKIIAWLV 110
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
++ + +P ++ +IL+ F+ + + + +T+WP++AR +R + LKN+ FV LSK
Sbjct: 111 DLFIGMPHLIFMILIF-FVVGKGAQGVIIATAVTHWPFLARVIRNEVYDLKNKAFVQLSK 169
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQK 262
+G + I+ I+P + S IF+ IL IL A++ F+G G S+G+IL +
Sbjct: 170 SMGKTPYYIVRHHILPLIASQIFIGFILLFPHVILHEASMTFLGFGLSAEQPSVGIILSE 229
Query: 263 AIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
A H + G WW + PGL + L++ A + ++++F P+
Sbjct: 230 AAKH--ISLGNWWLVVFPGLYLILVVNAFDTIGESLKKLFYPQ 270
>gb|AAF73092.1|AF103793_3 (AF103793) transmembrane protein OppC [Listeria monocytogenes]
Length = 344
Score = 129 bits (320), Expect = 6e-29
Identities = 99/319 (31%), Positives = 162/319 (50%), Gaps = 33/319 (10%)
Query: 10 LAFRNNKFKFGIGLISFFVL-FAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTR 68
L R NK L+S VL II + P+ S L E I + +LPP +
Sbjct: 37 LRIRKNK----AALVSLIVLALVIIMAIVGPYLSQNLGPEH--NINRQITENASLPPKVQ 90
Query: 69 --ENITIM-----YTGKTIEVL----------HILGTDKEGKDLYAELVYGLRTSLWIAV 111
EN+ G+ +++ + LG+D G+D +A + G R SL IAV
Sbjct: 91 GFENMPFWNGHQSIGGEDVDIYKQNNIKEGTYYWLGSDTLGRDQFARIWAGTRVSLIIAV 150
Query: 112 LAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQA 171
+AA+ +G+ GL+SGY GG VD + + ++ IP++V++IL+ LE P + +
Sbjct: 151 VAALCDLVIGVAYGLISGYVGGRVDNFMQRVLEVIGAIPNLVVVILMMLILE---PGIVS 207
Query: 172 LI--IGLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAG 229
+I I +T+W +AR VR Q L KN+EFV S +G S +I+ + ++PN+ I +
Sbjct: 208 IIIAIAMTSWITMARVVRGQVLKRKNQEFVMASMTLGESTPKILIKHLIPNISGIIIINI 267
Query: 230 ILQVSGAILASATLDFIGLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLII 288
+ + AI A L FIGLG P SLGV++ + LQ + + P +++ +I+
Sbjct: 268 MFSIPSAIFFEAFLSFIGLGLPAPAASLGVLVNDG--YKTLQV-LPYMILYPCIVLCIIM 324
Query: 289 TALFFVNLGMEEVFNPRLR 307
A + G+ + F+P++R
Sbjct: 325 IAFNLIADGLRDAFDPKMR 343
>pir||E72289 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981701|gb|AAD36229.1|AE001772_8 (AE001772)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 301
Score = 128 bits (318), Expect = 1e-28
Identities = 84/294 (28%), Positives = 146/294 (49%), Gaps = 43/294 (14%)
Query: 20 GIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYTGKT 79
G+ ++ F++ AI P+ P Y+ ++ ++L P + +
Sbjct: 39 GMIILLFYIFLAIFAPVLAP-------YDPTVRV------GRSLQPPSEK---------- 75
Query: 80 IEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELL 139
H+ GTD G+D+++ ++YG R +L +A LA +I + +GI +GL+SGY GGI D +L
Sbjct: 76 ----HLFGTDNLGRDIFSRVIYGSRIALMVAFLAVVIASAIGIPLGLISGYVGGIFDRVL 131
Query: 140 MMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFV 199
+ ++ + P ++L I VAA L + A+ I + P R VR Q S+KN +V
Sbjct: 132 TLVMDAVYSFPGLILAIAVAAVLGPGMMNI-AVSIAVVYAPTYFRVVRNQVTSVKNELYV 190
Query: 200 NLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG--PTTV---- 253
++ +G D I+ + ++PN+ I + + ++ AI+ A L F+GLG P T
Sbjct: 191 EAARALGAKDWEILVKYVLPNVFPSIVVVLSMNLADAIMTEAGLSFLGLGIAPPTPDWGF 250
Query: 254 -VSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRL 306
+S G Q+ I+ A WW + PGL I + + G+ E+ NP +
Sbjct: 251 DLSNG---QRFILSRA-----WWGVLFPGLAIITSVLGFSMFSEGLSEILNPNI 296
>pir||C72617 probable dipeptide transport system permease protein APE1396 -
Aeropyrum pernix (strain K1) >gi|5105079|dbj|BAA80393.1|
(AP000061) 387aa long hypothetical dipeptide transport
system permease protein [Aeropyrum pernix]
Length = 387
Score = 127 bits (317), Expect = 1e-28
Identities = 87/322 (27%), Positives = 144/322 (44%), Gaps = 39/322 (12%)
Query: 20 GIGLISFFVLFAIIGPLFTPFA-SDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYTGK 78
G+ L+ FV+ A+IGP P +D L Y + T+ + ++I +
Sbjct: 61 GVALVIAFVIIAVIGPYIAPLGYNDQLVYCVTDFDAVRLAPPGTVVEVAEDSICTQLGIE 120
Query: 79 TIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDEL 138
LG D+ G+DL + ++YG RTS + +L +G +GI +GL SGY+GG+VDE+
Sbjct: 121 PGTYKLWLGADEYGRDLLSRILYGARTSFIVVILVMAVGPWIGILLGLFSGYRGGVVDEV 180
Query: 139 LMMFVNIMLVIPSIVLLILVAAFLEAR---------------------SPE--------- 168
+M V++ L P ++L I ++A L +R PE
Sbjct: 181 IMRVVDVFLAFPGLILAIALSAVLPSRLDPIIINNELLLGTLLRLFALKPEDALPMVRLV 240
Query: 169 VQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMA 228
V + + + WP AR VR LS + +V ++ +G+ I+ I+PN++ + +
Sbjct: 241 VVVIALWIVWWPVYARLVRGMVLSARENTYVEAARALGIPTHSILLGHILPNILGPVLVY 300
Query: 229 GILQVSGAILASATLDFIGLGPT-TVVSLGVILQKAIMH--NALQFGWWWWFIPPGLIIT 285
L IL A L F+GLG + G I+ + NA WW PGL I
Sbjct: 301 LTLDFGAVILVEAGLSFLGLGAVPPIADWGRIIYDGAQYYPNA-----WWLVFFPGLAIL 355
Query: 286 LIITALFFVNLGMEEVFNPRLR 307
+ + + ++ +PR R
Sbjct: 356 FTVLGFNLLGDALRDIMDPRTR 377
>gb|AAG22036.1|AF305387_3 (AF305387) OppC [Bacillus thuringiensis]
Length = 337
Score = 126 bits (313), Expect = 4e-28
Identities = 87/310 (28%), Positives = 162/310 (52%), Gaps = 16/310 (5%)
Query: 6 DILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEK-VGKIELPAY-----S 59
D+ R F++ G L+S +L AI GP+ + + Y E+ +G+ ++P +
Sbjct: 35 DVRRRLFQHKGAMIGFVLLSLIILLAIFGPMVSKHS----YKEQDLGRAKMPPKIPVIEN 90
Query: 60 SKTLPPMTRENITI-MYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGT 118
LP + + Y + I+ GTD G+DL+ G R SL+IA+LAA I
Sbjct: 91 VHWLPFDGTDQYGVDQYEKRDIKEYFWFGTDDLGRDLWTRTWEGTRVSLYIALLAAAIDL 150
Query: 119 TLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTN 178
+G+ G +S + GG VD ++ + I+ IP ++++IL+ + + + L + +T
Sbjct: 151 VIGVAYGGISAFYGGRVDNIMQRIMEIINGIPYLIIVILMVIIMGSGIWSI-TLAMAITG 209
Query: 179 WPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAIL 238
W ++R VR Q L LKN+E+V S+ +G ++ ++I + ++PN++ I + + + A+
Sbjct: 210 WIGMSRIVRGQILKLKNQEYVLASRTLGATNTQLIVKHLIPNVMGPIIVMTMFTIPSAVF 269
Query: 239 ASATLDFIGLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLG 297
A L FIGLG SLG ++ + ++Q FI P ++I+++I A + G
Sbjct: 270 GEAFLSFIGLGIQPPFASLGSLVNDG--YKSIQTYPHMMFI-PAVVISILILAFNLMADG 326
Query: 298 MEEVFNPRLR 307
+ + +P++R
Sbjct: 327 LRDALDPKMR 336
>pir||T35940 probable transport permease protein - Streptomyces coelicolor
>gi|4158199|emb|CAA22762.1| (AL035206) putative
transport permease protein [Streptomyces coelicolor
A3(2)]
Length = 312
Score = 125 bits (312), Expect = 5e-28
Identities = 80/228 (35%), Positives = 121/228 (52%), Gaps = 6/228 (2%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H GTD G+DL VYGLR SL + + AA+ T +G +G +G GG VD +M V
Sbjct: 86 HPFGTDDVGRDLLLRCVYGLRVSLLVGMAAALTATVVGTAVGATAGALGGWVDRGVMRVV 145
Query: 144 NIMLVIPSIVL-LILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLS 202
+ + +P ++L + +VA F P V + + LT+W AR VRA+ LSL+ R ++ +
Sbjct: 146 DALSSVPHLLLGIFIVAMFRPGVWPVVAS--VALTHWLSTARIVRAEVLSLRARPHIDAA 203
Query: 203 KIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQ 261
G S R+ ++P ++ +A +L V A+ + L F+GLG PT SLG ++Q
Sbjct: 204 VSGGASRWRVTVRHLLPGVLPQAALAAVLMVPHAMWHESALSFLGLGLPTHTASLGNLIQ 263
Query: 262 KAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLRGE 309
+A +L G WW + PGL I + A+ + E NPR R E
Sbjct: 264 EA--RGSLLAGQWWPTLFPGLFIIVPTLAVAGLAGAWRERINPRRRSE 309
>dbj|BAB07361.1| (AP001519) dipeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 306
Score = 125 bits (310), Expect = 9e-28
Identities = 85/305 (27%), Positives = 143/305 (46%), Gaps = 35/305 (11%)
Query: 6 DILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPP 65
D R +N GI ++ FF+ A+ PL T + DG Y+ +++ P+
Sbjct: 33 DAFRQLRKNKLAMTGIVIVCFFLFIALFAPLLTTHSFDG--YDAASRLQSPSAE------ 84
Query: 66 MTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIG 125
H GTD G+D++ + YG + SL + A +G +G
Sbjct: 85 ------------------HWFGTDDLGRDVFTRIAYGAQLSLQVGFFAVAGALLVGTLLG 126
Query: 126 LVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARS 185
+++GY G +D L+ +IML PSI+L I + A L S + I + N P R
Sbjct: 127 VLAGYYGRWLDMLISRIFDIMLAFPSILLAIAIVAIL-GPSLHNAMVAIAIVNIPIFGRL 185
Query: 186 VRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDF 245
VR++ +SL+ EF+ ++ G+ + RI+F I+PN +S I + L AIL +A L F
Sbjct: 186 VRSKVISLRAEEFIMAARAQGMKNSRILFHHILPNSLSPIIVQATLGFGTAILEAAALGF 245
Query: 246 IGLG-PTTVVSLGVIL--QKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVF 302
+GLG + G +L +A + A W I PG+ I L++ + G+ +
Sbjct: 246 LGLGAQAPLAEWGKMLADSRAYIQTAP-----WVAIFPGMSIMLVVLGFNMIGDGLRDAL 300
Query: 303 NPRLR 307
+P+++
Sbjct: 301 DPKMK 305
>pir||E71014 probable dipeptide transport system permease protein dppC -
Pyrococcus horikoshii >gi|3257834|dbj|BAA30517.1|
(AP000006) 385aa long hypothetical dipeptide transport
system permease protein dppC [Pyrococcus horikoshii]
Length = 385
Score = 124 bits (309), Expect = 1e-27
Identities = 89/319 (27%), Positives = 145/319 (44%), Gaps = 41/319 (12%)
Query: 20 GIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYTGKT 79
G+ L+ F+ I GP P+ Y + Y L P + + Y
Sbjct: 59 GLFLVIIFIFLGIFGPYLAPWK-----YNFFPTLYTSHYDQVYLVPPGSKAVLDFYNNTV 113
Query: 80 IEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELL 139
I + LG+D G+DL + ++ G RTS I+++ +G LGI +GL++GY GG +DEL+
Sbjct: 114 IT--YPLGSDHYGRDLLSLILQGARTSFVISIIVISLGVPLGIILGLIAGYYGGKIDELI 171
Query: 140 MMFVNIMLVIPSIVLLILVAAFLEAR------SPEV----------------------QA 171
M ++ L P+++L I +A L R S E+ A
Sbjct: 172 MRTTDMFLAFPALILAIAFSAVLPDRLQAFISSHEIIEKIVLAIFALDQREAGNLGRLLA 231
Query: 172 LIIGLTN--WPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAG 229
+I+ + WP AR R TL+ + + +V ++ VGL I+F+ I+PN+I I +
Sbjct: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAVGLPTRTILFKHILPNIIGPILVYI 291
Query: 230 ILQVSGAILASATLDFIGLGPTTVVSLGVILQKAIMHNALQFGWWWWFI-PPGLIITLII 288
L G +L A L F+GLG ++ + + A F WW + PGLI+ L
Sbjct: 292 TLDFGGVVLMEAGLSFLGLGAVPPIA---DWGRIVYDGAQYFPRCWWLVFYPGLIVLLTA 348
Query: 289 TALFFVNLGMEEVFNPRLR 307
+ G+ ++ +PR R
Sbjct: 349 LGWNLLGDGLRDILDPRTR 367
>sp|Q07743|OPPC_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|1075748|pir||D53290 oligopeptide transport protein
oppC - Lactococcus lactis subsp. lactis
>gi|149389|gb|AAA25166.1| (M76471) 'Sequence is part of
a 1.65-kb fragment of the lactose plasmid from
Lactococcus lactis subsp cremoris SK11 that facilitates
integration when plasmid is in L.lactis subsp. lactis.';
ORF >gi|308853|gb|AAA16166.1| (L18760) transmembrane
protein [Lactococcus lactis] >gi|495180|gb|AAB00536.1|
(U09553) transmembrane protein [Lactococcus lactis]
Length = 294
Score = 123 bits (307), Expect = 2e-27
Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 2/223 (0%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H+LGTD G+D+ L+ R S IA +I +G +G+++GY GG D + M F
Sbjct: 69 HLLGTDNGGRDIIMMLMISARNSFNIAFAVTLITLVVGNILGVITGYFGGRFDLIFMRFT 128
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
+ ++++PS++++I+ + + II + +W R +RA+T++ NR++V SK
Sbjct: 129 DFVMILPSMMIIIVFVTIIPRFNSWSLIGIISIFSWIGTTRLIRARTMTEVNRDYVRASK 188
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQK 262
G SD +I+F EI PN+ + + L +G I L F+G G P SLG ++ +
Sbjct: 189 TSGTSDFKIMFREIWPNLSTLVIAEATLVFAGNIGLETGLSFLGFGLPAGTPSLGTMINE 248
Query: 263 AIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
A + W W +P ++I +++ A+ F+ + V + R
Sbjct: 249 ATNPETMTDKPWTW-VPATVVILIVVLAIIFIGNALRRVADQR 290
>emb|CAC11414.1| (AL445063) ABC-transporter (orf C) related protein [Thermoplasma
acidophilum]
Length = 716
Score = 123 bits (307), Expect = 2e-27
Identities = 76/224 (33%), Positives = 121/224 (53%), Gaps = 5/224 (2%)
Query: 85 ILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVN 144
+LGT GKD+++ + T L+I V+ I + + IG++ GY GIV L+ F
Sbjct: 492 LLGTTDHGKDVWSLFIGSFPTDLYIGVVVGIGILLISMVIGMLIGYFTGIVSSLVETFSL 551
Query: 145 IMLVIPSIVLLILVAAFLEARSPEVQALIIGLT--NWPWVARSVRAQTLSLKNREFVNLS 202
+ +IP + LLI+VA+ + P + LI LT +WP+ ++ SLK+R FV +
Sbjct: 552 AVYLIPGLPLLIVVASIV---GPSLIGLIAVLTFLSWPFPTFTLIGIIRSLKSRAFVEAA 608
Query: 203 KIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVILQK 262
KI G S + I+ + ++PN+ + + + GA+ A +TL +G+ P V + G +L
Sbjct: 609 KISGASTMYILRKHMLPNITPILVYLTAINIGGAVAAVSTLQILGVAPLNVPTWGGMLSG 668
Query: 263 AIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRL 306
WWFIPP + +TL I A FV+ G++EV NPRL
Sbjct: 669 FYSDYFDLIIAPWWFIPPIVALTLFIFAFIFVSRGLDEVVNPRL 712
>sp|P77664|OPPC_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|7442406|pir||H64871 oligopeptide transport system
permease protein oppC - Escherichia coli
>gi|1742034|dbj|BAA14777.1| (D90763) Oligopeptide
transport system permease protein OppC. [Escherichia
coli] >gi|1787498|gb|AAC74327.1| (AE000223) homolog of
Salmonella oligopeptide transport permease protein
[Escherichia coli K12] >gi|1805526|dbj|BAA16040.1|
(D90852) Oligopeptide transport system permease protein
OppC. [Escherichia coli]
Length = 302
Score = 122 bits (304), Expect = 4e-27
Identities = 85/304 (27%), Positives = 142/304 (45%), Gaps = 31/304 (10%)
Query: 6 DILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPP 65
D R N + ++ LF I+ P+ + FA D +
Sbjct: 28 DARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDW------------------ 69
Query: 66 MTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIG 125
+M + +E H GTD G+DL + G R SL + V AA++ +G G
Sbjct: 70 ------AMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYG 123
Query: 126 LVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARS 185
+SGY GG VD ++M + I+ P + +IL+ F ++ + + IG+ +W +AR
Sbjct: 124 SLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF-GQNILLIFVAIGMVSWLDMARI 182
Query: 186 VRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDF 245
VR QTLSLK +EF+ +++ G+S I+ I+PN++ + + L V IL + L F
Sbjct: 183 VRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSF 242
Query: 246 IGLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPG-LIITLIITALFFVNLGMEEVFN 303
+GLG + S G +L N+++ W P G L++TL F+ G+ + +
Sbjct: 243 LGLGTQEPLSSWGALLSDGA--NSMEVSPWLLLFPAGFLVVTLF--CFNFIGDGLRDALD 298
Query: 304 PRLR 307
P+ R
Sbjct: 299 PKDR 302
>sp|P94312|DPPC_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|11277274|pir||T44637 dipeptide transport protein
dppC [imported] - Bacillus firmus
>gi|1813497|gb|AAB41690.1| (U64514) dipeptide
transporter protein dppC [Bacillus firmus]
Length = 304
Score = 122 bits (304), Expect = 4e-27
Identities = 91/293 (31%), Positives = 141/293 (48%), Gaps = 39/293 (13%)
Query: 20 GIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYTGKT 79
G+ +I+ F+L AI PL T + Y E L S++
Sbjct: 45 GLIIITSFILIAIFAPLLTSSS----YAETNPSNRLQGPSAE------------------ 82
Query: 80 IEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELL 139
H GTD G+D++ +VYG R SL + A G T+GL++GY G +D L+
Sbjct: 83 ----HWFGTDDFGRDIFTRIVYGARLSLQVGFFAVTGALIFGTTLGLIAGYYGRWIDMLI 138
Query: 140 MMFVNIMLVIPSIVLLILVAAFLEARSPEVQ-ALI-IGLTNWPWVARSVRAQTLSLKNRE 197
+IML PSI+L I + A L P +Q ALI I + N P R VR++ +SL+ E
Sbjct: 139 SRIFDIMLAFPSILLAIAIVAIL---GPSLQNALIAIAIVNVPIFGRLVRSKVISLREEE 195
Query: 198 FVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSL 256
F+ +K G+ + RIIF I+PN ++ I + L AIL +A L F+GLG +
Sbjct: 196 FIMAAKAQGMKNGRIIFHHILPNSLAPIIVQATLGFGTAILEAAALGFLGLGAQAPMPEW 255
Query: 257 GVILQKAIMHNALQF--GWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
G +L ++ QF W + PG I L++ + G+ + +P+++
Sbjct: 256 GKMLS-----DSRQFIQSAPWTVLFPGFSIMLVVLGFNMIGDGLRDALDPKMK 303
>gb|AAK42737.1| Dipeptide ABC transporter permease protein (dppC-3) [Sulfolobus
solfataricus]
Length = 298
Score = 122 bits (304), Expect = 4e-27
Identities = 80/303 (26%), Positives = 147/303 (48%), Gaps = 19/303 (6%)
Query: 7 ILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPM 66
+L+ R+ G+ ++S F+++++I + +S Y K Y L P
Sbjct: 10 MLKALIRDKAGLLGLIIVSLFLIWSLIQGILEILSS---YLRK-------QYLGYILLPH 59
Query: 67 TRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGL 126
+ +LGT+ EG+D+ + ++Y L ++A++ +G +G+
Sbjct: 60 NPFQYNLQLAFHPPSSTFLLGTNAEGEDILSRILYALPRDAFVAIVVVFSAIIIGGILGI 119
Query: 127 VSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTN--WPWVAR 184
++GY GGIVDE+LM + L +P+++L+I + L+A A I+GL WP AR
Sbjct: 120 LAGYLGGIVDEILMRVTDAFLSLPALILVIAITVPLKA---TFFATILGLAVVWWPTYAR 176
Query: 185 SVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLD 244
RAQTL +KN ++++ +K+ +S + + + I N I + L IL +TL
Sbjct: 177 FYRAQTLRIKNMDYISAAKLSNVSRISLFYRYIFLNAIDPVLAYAALDFGNVILTYSTLA 236
Query: 245 FIGLGPT-TVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFN 303
F+G+G T + LG + + +WWW + PGL I +I+ + +++V
Sbjct: 237 FLGIGITPPIPELGEMAANGVTGLP---QYWWWALFPGLTILIIVVGFVLLGDRLQDVVA 293
Query: 304 PRL 306
R+
Sbjct: 294 GRI 296
>pir||D64557 dipeptide ABC transporter, permease protein - Helicobacter pylori
(strain 26695) >gi|2313398|gb|AAD07369.1| (AE000548)
dipeptide ABC transporter, permease protein (dppC)
[Helicobacter pylori 26695]
Length = 285
Score = 122 bits (303), Expect = 6e-27
Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 5/223 (2%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
++LGTD G+D+ + L+YG R SL I +++ I G +GL++GY GG D ++M +
Sbjct: 64 YLLGTDDLGRDILSRLIYGARISLTIGIVSMGIAVFFGTILGLIAGYFGGKTDAIIMRIM 123
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
+IM +PSI+L+++V A L S L IG P AR VR+ L K +E+V SK
Sbjct: 124 DIMFALPSILLIVIVVAVL-GPSLTNAMLAIGFVGIPGFARLVRSSVLGEKEKEYVIASK 182
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQK 262
I G S LR++ + I PN I + + + + +L +A L F+GLG G +L
Sbjct: 183 INGSSHLRLMCKVIFPNCIIPLIVQTTMGFASTVLEAAALSFLGLGAQPPKPEWGAMLMN 242
Query: 263 AIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
++ + A W + PG++I L + + V G+ + +P+
Sbjct: 243 SMQYIATA---PWMLVFPGVMIFLTVMSFNLVGDGIMDALDPK 282
>gb|AAB38742.1| (U78885) transport system permease homolog [Listeria monocytogenes]
Length = 335
Score = 120 bits (299), Expect = 2e-26
Identities = 70/178 (39%), Positives = 107/178 (59%), Gaps = 6/178 (3%)
Query: 86 LGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNI 145
LG+D G+D +A + G R SL IAV+AA+ +G+ GL+SGY GG VD + + +
Sbjct: 125 LGSDTLGRDQFARIWAGTRVSLIIAVVAALCDLIIGVAYGLISGYVGGRVDNFMQRVLEV 184
Query: 146 MLVIPSIVLLILVAAFLEARSPEVQALI--IGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
+ IP++V++IL+ LE P + ++I I +T+W +AR VR Q L LKN+EFV S
Sbjct: 185 IGAIPNLVVVILMMLILE---PGIVSIIIAIAMTSWITMARVVRGQVLKLKNQEFVMASM 241
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVIL 260
+G S +I+ + ++PN+ I + + + AI A L FIGLG P SLGV++
Sbjct: 242 TLGESTPKILIKHLIPNISGIIIINIMFSIPSAIFFEAFLSFIGLGLPAPAASLGVLV 299
>emb|CAC11409.1| (AL445063) probable dipeptide transport system permease protein
dppC [Thermoplasma acidophilum]
Length = 265
Score = 120 bits (298), Expect = 2e-26
Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 7/225 (3%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
++LGT+ G+D+ + ++Y + +I+++ + G LG G+++GY+GG +DE++M
Sbjct: 44 YLLGTNANGEDILSRMLYAMPRDAYISIIVVLSGVLLGGLFGIIAGYRGGYLDEVIMRIT 103
Query: 144 NIMLVIPSIVLLI-LVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLS 202
+ L +P+++L+I L F E + AL+I WP AR RAQTL +KN +FV +
Sbjct: 104 DAFLSLPALILVIALSVLFHETLGGVILALVI--VWWPIYARFFRAQTLRIKNLDFVQAA 161
Query: 203 KIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQ 261
K+ +S ++ F + N I + L IL +TL F+G+G + LG +
Sbjct: 162 KLGNVSFAKLFFSYLFINSIDPVVAYAALDFGNVILTYSTLAFLGIGLEPPIPELGSMAS 221
Query: 262 KAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRL 306
+ L G WW+ + PGL I +I+ V M+++ + R+
Sbjct: 222 NGV--GTLPTG-WWYAVFPGLAILIIVIGFVLVGDRMQDIVSNRI 263
>sp|P08006|OPPC_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|72439|pir||QREBOC oligopeptide transport system
permease protein oppC - Salmonella typhimurium
>gi|47804|emb|CAA29041.1| (X05491) Opp C (AA1-301)
[Salmonella typhimurium]
Length = 302
Score = 120 bits (297), Expect = 3e-26
Identities = 71/226 (31%), Positives = 120/226 (52%), Gaps = 7/226 (3%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H GTD G+DL + G R SL + + AA++ +G G +SGY GG +D ++M +
Sbjct: 82 HYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKIDSVMMRLL 141
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
I+ P + +IL+ F ++ + + IG+ +W +AR VR QTLSLK +EF+ ++
Sbjct: 142 EILNSFPFMFFVILLVTFF-GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQ 200
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQK 262
+ G+S I+ I+PN++ + + L V IL + L F+GLG + S G +L
Sbjct: 201 VGGVSTASIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSD 260
Query: 263 AIMHNALQFGWWWWFIPPG-LIITLIITALFFVNLGMEEVFNPRLR 307
N+++ W P G L++TL F+ G+ + +P+ R
Sbjct: 261 GA--NSMEVSPWLLLFPAGFLVVTLF--CFNFIGDGLRDALDPKDR 302
>pir||D82242 oligopeptide ABC transporter, permease protein VC1093 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655562|gb|AAF94252.1| (AE004190) oligopeptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 300
Score = 120 bits (297), Expect = 3e-26
Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 7/235 (2%)
Query: 74 MYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGG 133
M+ G + E H GTD G+DL+ + G R SL + ++ A++ +G G SG+ GG
Sbjct: 72 MHAGPSAE--HWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGG 129
Query: 134 IVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSL 193
D ++M + I+ IP + L+I++ F R+ + + IG W +AR VR QTLSL
Sbjct: 130 RTDRVMMRILEILYAIPFMFLVIVLVTFF-GRNIVLIFVAIGAIAWLDMARIVRGQTLSL 188
Query: 194 KNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTT 252
+++EF+ + + G+S II I+PN++ + + L + IL + L F+GLG
Sbjct: 189 RSKEFIEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEP 248
Query: 253 VVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
+ S G +LQ+ N ++ W P ++ L + +V G+ + +P+ R
Sbjct: 249 MTSWGALLQEGA--NTMEVAIWQLLFPAAFMV-LTLFCFNYVGDGLRDALDPKDR 300
>pir||E75454 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458682|gb|AAF10533.1|AE001948_2
(AE001948) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 332
Score = 119 bits (296), Expect = 4e-26
Identities = 85/326 (26%), Positives = 153/326 (46%), Gaps = 30/326 (9%)
Query: 2 KGKADILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPF--ASDGLYYEKVGKIELPAYS 59
+G++ R R+ K G +++ FVL A++ P+ P+ +D Y ++ L S
Sbjct: 12 RGQSIFWRRFRRSTPGKVGAIIVALFVLLALLAPVLRPYDPTTDRNY-----RLNLKPPS 66
Query: 60 SKTL-PPMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGT 118
L +E T TGK GTD G+D+YA +++G R SL + V++ ++
Sbjct: 67 ITALWDAGAKETYTDPATGKVNLWAAPFGTDNLGRDIYARVLHGTRISLKVGVVSTLLAL 126
Query: 119 TLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEV--------- 169
+G +G+++G+ GG D ++ +++L PSI+L I A + P +
Sbjct: 127 VIGTLLGVMAGFFGGWFDSVMGYLTDVLLAFPSILLAIGFATIFSSDHPPLLIKGLDRLF 186
Query: 170 ---------QALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPN 220
L + L P R R+ LS++ REFV + +G S R++F+ ++PN
Sbjct: 187 ALNSPQLVTAMLAVSLVQIPVYMRLARSVVLSIREREFVQAAGALGASQWRMVFKHVLPN 246
Query: 221 MISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIP 279
+S + + G L ++ A + A L F+G+G + G ++ + + W I
Sbjct: 247 SLSPLIVQGALSIATATIEVAALGFLGIGAQPPLPEWGTMISDSRQY---YVDAPWTMIF 303
Query: 280 PGLIITLIITALFFVNLGMEEVFNPR 305
PGL I L + + G+ +V +PR
Sbjct: 304 PGLAIFLTVLGFNLLGDGLRDVLDPR 329
>pir||D83082 probable permease of ABC transporter PA4504 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9950744|gb|AAG07892.1|AE004864_4 (AE004864) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 303
Score = 118 bits (293), Expect = 8e-26
Identities = 72/227 (31%), Positives = 126/227 (54%), Gaps = 11/227 (4%)
Query: 85 ILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVN 144
+LGTD+ G+DL + L++G R SL I + + +I GI +GL++G+ L+M ++
Sbjct: 81 LLGTDELGRDLLSRLIHGARLSLLIGLSSVVISLVPGILLGLLAGFSPNRAGPLIMRLMD 140
Query: 145 IMLVIPSIVLLILVAAFLEARSPEV--QALIIGLTNWPWVARSVRAQTLSLKNREFVNLS 202
IML +PS++L + + A L P + + I + + P R RA ++ NR++V S
Sbjct: 141 IMLALPSLLLAVAIVAIL---GPGLINTVIAIAIVSLPAYVRLTRAAVMTELNRDYVTAS 197
Query: 203 KIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG--PTTVVSLGVIL 260
++ G LR++F ++PN ++ + + L S AIL +A L F+GLG P T G +L
Sbjct: 198 RLAGAGTLRLMFVCVLPNCMAPLIVQATLSFSSAILDAAALGFLGLGVQPPT-PEWGTML 256
Query: 261 QKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
A + ++ WW + PGL I L + A+ + G+ + +P+L+
Sbjct: 257 ASA--RDYIERAWWVVSL-PGLTILLSVLAINLMGDGLRDALDPKLK 300
>pir||C72059 peptide ABC transporter, permease protein, probable CP0151
[imported] - Chlamydophila pneumoniae (strains CWL029
and AR39) >gi|4376892|gb|AAD18736.1| (AE001644)
Oligopeptide Permease [Chlamydophila pneumoniae CWL029]
>gi|7189087|gb|AAF38033.1| (AE002176) peptide ABC
transporter, permease protein, putative [Chlamydophila
pneumoniae AR39] >gi|8978969|dbj|BAA98804.1| (AP002547)
oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 579
Score = 118 bits (292), Expect = 1e-25
Identities = 66/215 (30%), Positives = 116/215 (53%), Gaps = 3/215 (1%)
Query: 93 KDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSI 152
KDL A LV+G+R +L +A + I +GI IGLVSGY GG VD +L F I +P +
Sbjct: 366 KDLLAALVFGIRIALVVAGIGITIALAIGIMIGLVSGYFGGTVDMILSRFTEIWETMPVL 425
Query: 153 VLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRI 212
+L+LV + + +S + +++G +W +R VR + L ++R +V + +G S I
Sbjct: 426 FILMLVISITQQKSLLLNTVLLGCFSWTGFSRYVRIEVLKQRDRGYVLAATNLGYSHYYI 485
Query: 213 IFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVILQKAIMHNALQFG 272
+ +I+PN I + + I A L F+GLG + S G ++++ + +
Sbjct: 486 MVHQILPNAIVPVISLVPFAMMAMISCEAGLTFLGLGEESSASWGNLMREGVTGFPAESA 545
Query: 273 WWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
W PP +I+T+++ A+ + G+ + +PRL+
Sbjct: 546 VLW---PPAIILTMLLIAIALIGDGVRDALDPRLQ 577
>pir||G72215 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4982326|gb|AAD36813.1|AE001813_5 (AE001813)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 289
Score = 116 bits (289), Expect = 2e-25
Identities = 86/298 (28%), Positives = 136/298 (44%), Gaps = 32/298 (10%)
Query: 10 LAFRNNKFK-FGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTR 68
L F+ NK G + + AI+ P P+ D +Y + E P+
Sbjct: 18 LRFKKNKMAVIGGVFVLILIALAILAPYIAPYPYDEPHY--IRAFEGPSKD--------- 66
Query: 69 ENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVS 128
I GTD G+DL++ ++Y LR + I + + +G +G V+
Sbjct: 67 ---------------FIFGTDALGRDLFSRILYSLRNACIIGFGSQFVVLIIGGILGAVA 111
Query: 129 GYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRA 188
G+KGG +D+ +M V+IM P+ + +++ L R L IGLT W +AR VR
Sbjct: 112 GFKGGWIDKFIMSIVDIMFAFPTFLFNVILVTAL-GRGLFTIFLAIGLTGWAGMARLVRG 170
Query: 189 QTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGL 248
Q L LKN EFV +K G S II + I+PNMI I + V GA++ + L IG+
Sbjct: 171 QVLYLKNSEFVEAAKAAGASTFYIIRKHILPNMIGPILVNLAFGVPGAMMTESGLAVIGM 230
Query: 249 G-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
G + S G ++ + I + + I P + + + F+ G+ + FNPR
Sbjct: 231 GVRPPMPSWGNLIGEGI---GMMMAFPHLLIFPAVTFAFTLISFTFLADGLRDAFNPR 285
>pir||S76046 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001402|dbj|BAA10024.1| (D63999) oligopeptide
transport system permease protein [Synechocystis sp.]
Length = 294
Score = 116 bits (289), Expect = 2e-25
Identities = 84/269 (31%), Positives = 129/269 (47%), Gaps = 37/269 (13%)
Query: 6 DILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPP 65
++ R F+ + + VL + GP+F Y + +I+ +S +PP
Sbjct: 15 NLQRKIFQKPLASLSLITLIIIVLSVVFGPIF--------YRVPIDQID---FSQTAVPP 63
Query: 66 MTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIG 125
+ H LGT+ G+D A L+ G R SL + + A + TLG IG
Sbjct: 64 SWQ---------------HPLGTNDLGQDQLARLLIGGRISLAVGLSAMAVSLTLGTLIG 108
Query: 126 LVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLE-----ARSPE-----VQALIIG 175
++GY GG D +LM ++ L +P + L++LV A SPE + L+IG
Sbjct: 109 AIAGYFGGWWDVILMRITDLFLALPQLPLVLLVVYLFREPVTRATSPEKGIFILVVLLIG 168
Query: 176 LTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSG 235
L NW VAR VR L L+ EFV + +G II+ ++PN+++ I +A L V
Sbjct: 169 LLNWMSVARLVRGNILRLREMEFVKAAIAMGAGSNHIIWRHLLPNVLNLIIVAASLAVGN 228
Query: 236 AILASATLDFIGLG-PTTVVSLGVILQKA 263
AI+ +TL F+GLG P V + G +L A
Sbjct: 229 AIITESTLSFLGLGFPPDVPTWGQMLYTA 257
>gi|10955091 moaC [Agrobacterium tumefaciens] >gi|11277278|pir||T45538 moaC
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665714|gb|AAB88474.1| (AF242881) moaC
[Agrobacterium tumefaciens]
Length = 293
Score = 116 bits (289), Expect = 2e-25
Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 11/228 (4%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
++LG D+ G+D+ L+YG R SL I LA +I +G IG+++G++GG +D +LM +
Sbjct: 70 YLLGADQYGRDILTRLLYGARYSLLIGSLAVVIAMVIGTLIGMMAGFRGGKIDIVLMQIM 129
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
+++L PS++L I + A + A + A I T+ P AR RA L+ ++RE+V
Sbjct: 130 DVILAFPSLILGIALVALMGATMTNIIA-AIAFTSVPAFARVARAAVLTQRDREYVQACS 188
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG--PTTVVSLGVILQ 261
+G S R +F I+P ++ + + L ++ A+ A+L F+GLG P G++
Sbjct: 189 AMGFSGSRTLFRHILPAILPEVMVLASLWMANAVRTEASLAFVGLGIAPPAPTWGGMVRD 248
Query: 262 --KAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
I+ + + I P L I L++ A + G+ ++ +PR++
Sbjct: 249 GFTVILSSP------YLAIFPSLAILLLVLAFNLIGDGLRDLIDPRMK 290
>pir||E72371 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981013|gb|AAD35587.1|AE001726_21 (AE001726)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 313
Score = 116 bits (289), Expect = 2e-25
Identities = 78/311 (25%), Positives = 147/311 (47%), Gaps = 16/311 (5%)
Query: 7 ILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELP--AYSSKTLP 64
I++ FR+ G L+ FFV+ AI+ P+ P + +P +++ P
Sbjct: 8 IMKRFFRDPSAIIGFSLVLFFVVIAILAPVIAPPIHPLTRAKLPDPYLMPVVSWNQSPQP 67
Query: 65 PMTRENITIMYTGKT------IEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGT 118
P T+E+ + ++G G+D+ +V+G RT+ I ++ +
Sbjct: 68 PTTKEDALAKNPNREPIRCVDYHPFGVIG----GRDILYGIVWGTRTAFKIGLIVTLARL 123
Query: 119 TLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTN 178
+G+ IG +SGY GG +DE+LM +I L IP ++ +++ L +V +I +
Sbjct: 124 LIGVFIGSISGYFGGWIDEVLMRITDIFLSIPFLIAAVVLTTVLGTGLDKVMIAMI-VFG 182
Query: 179 WPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAIL 238
W AR +R L ++ +FV +K +G+ D II + ++PN I + + + + ++
Sbjct: 183 WMGAARLIRGNILQVREEQFVLAAKAIGVPDFLIILKHVLPNTIFPVLIWASMNMGSLVI 242
Query: 239 ASATLDFIGLG-PTTVVSLGVILQKAIMHNALQFG-WWWWFIPPGLIITLIITALFFVNL 296
+A L F+GLG P G IL + ++ G W+ + PG + L + +
Sbjct: 243 TAAVLSFLGLGAPQGYADWGSILSYS-RDWMMEIGKHWYALVYPGTAMVLFVLGWNLLGD 301
Query: 297 GMEEVFNPRLR 307
+ + F+PRL+
Sbjct: 302 ALRDAFDPRLK 312
>pir||T34756 oligopeptide transport integral membrane protein - Streptomyces
coelicolor >gi|3402243|emb|CAA20179.1| (AL031184)
oligopeptide transport integral membrane protein
[Streptomyces coelicolor A3(2)]
Length = 335
Score = 116 bits (287), Expect = 4e-25
Identities = 66/235 (28%), Positives = 126/235 (53%), Gaps = 18/235 (7%)
Query: 84 HILGTDK-EGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMF 142
H LG + G+D++A +V+G R SL + L+A++ LG +G+++G+ GG VD L+
Sbjct: 103 HWLGVEPVNGRDIFARIVHGARISLLVGFLSAMVAVVLGTVLGVLAGFFGGWVDSLICRI 162
Query: 143 VNIMLVIPSIVLLILVAAFLEARSPEVQA---------LIIGLTNWPWVARSVRAQTLSL 193
++ +L P ++ +I + + + + ++IG WP++ R VR QTLS+
Sbjct: 163 MDGLLAFPQLLFIIALVSVMPDNMLGLSGTGVRLLMMIVVIGFFGWPYIGRVVRGQTLSM 222
Query: 194 KNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG---P 250
+ RE+V ++ +G I+F+E++PN+++ I + + + IL A L F+G+G P
Sbjct: 223 REREYVEAARSLGAGRFYILFKELLPNLVAPIIVYTTMMIPTNILTEAALSFLGVGVKPP 282
Query: 251 TTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
T+ S G +L AI + + + PG+ I + + A G+ + +P+
Sbjct: 283 TS--SWGQMLSSAIDYYKSD---PMYMVVPGVAIFITVLAFNLFGDGVRDALDPK 332
>gb|AAK41520.1| Oligo/dipeptide transport, permease protein (dppC-2) [Sulfolobus
solfataricus]
Length = 536
Score = 115 bits (286), Expect = 6e-25
Identities = 65/216 (30%), Positives = 121/216 (55%), Gaps = 6/216 (2%)
Query: 85 ILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVN 144
+LGTD G ++AE G L +A+LA + +G GL +GY GG +D++L F +
Sbjct: 305 VLGTDNNGASVFAEYSQGGIFDLELAILAGLAIVFIGAVFGLFAGYYGGKLDQILTSFTD 364
Query: 145 IMLVIPSI-VLLILVAAFLEARS--PEVQALIIGLT--NWPWVARSVRAQTLSLKNREFV 199
+L++P + +L++L+ F + + P+ +II L +WP +R++R Q L ++N FV
Sbjct: 365 FILLLPGLAILIVLITIFQQIFTVFPKDILIIIVLVILSWPPTSRTIRGQVLQVRNMAFV 424
Query: 200 NLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVI 259
+K +G+S++ II + ++ ++ I I + I + LDF+G+G + G +
Sbjct: 425 EAAKALGMSNMEIIRKHVLRHVFPIIIAQLIFDIPAVIGIESALDFLGIGILKFPTWGNM 484
Query: 260 LQKAIMHNALQFGW-WWWFIPPGLIITLIITALFFV 294
L +I + G+ WWW + PG+ + L+ +LF++
Sbjct: 485 LGFSINASLDAPGFAWWWILTPGIALFLLGVSLFYI 520
>pir||D82442 probable peptide ABC transporter, permease protein VCA0589
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9658000|gb|AAF96491.1| (AE004389) peptide ABC
transporter, permease protein, putative [Vibrio
cholerae]
Length = 352
Score = 115 bits (286), Expect = 6e-25
Identities = 67/224 (29%), Positives = 130/224 (57%), Gaps = 8/224 (3%)
Query: 86 LGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNI 145
LGTD +G+D+ A ++YG R S+ + +I + +G+ IG GY GG +D F+ +
Sbjct: 131 LGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLFGQRFIEV 190
Query: 146 MLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIV 205
+P++ LLI++++F+E + +++ L +W + VRA+ L +N ++V ++ +
Sbjct: 191 WSGMPTLFLLIILSSFVEPNFWWLLGIMV-LFSWMSLVGVVRAEFLRCRNFDYVRAAQAM 249
Query: 206 GLSDLRIIFEEIMPN-MISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQKA 263
G+SD+RII ++PN M++ + M + +SG++ +LDF+G G P SLG +L +
Sbjct: 250 GVSDMRIILRHMLPNAMVASLTMMPFI-LSGSVTTLTSLDFLGFGLPAGSPSLGELLAQG 308
Query: 264 IMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
+ LQ W I +++++++T L F+ + + F+P L+
Sbjct: 309 KAN--LQAPWLG--ISAFVVLSVMLTLLVFIGEAVRDAFDPHLQ 348
>gb|AAC69839.1| (AF076683) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 289
Score = 115 bits (284), Expect = 1e-24
Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 7/225 (3%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H+LGTD G+D+ L+Y +R SL +A + +G +G +SGY G VD L+M
Sbjct: 54 HLLGTDHLGRDILTRLIYAIRPSLLYVFVALFVSVLIGSILGFLSGYFQGFVDALIMRAC 113
Query: 144 NIMLVIPS-IVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLS 202
++ML PS +V L L+A F + A I LT W W R +R + + V +
Sbjct: 114 DVMLAFPSYVVTLALIALFGMGAENIIMAFI--LTRWAWFCRVIRTSVMQYTASDHVRFA 171
Query: 203 KIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQ 261
K +G++D++II + IMP ++ I + + IL + F+GLG G++L
Sbjct: 172 KTIGMNDMKIIHKHIMPLTLADIAIISSSSMCSMILQISGFSFLGLGVKAPTAEWGMMLN 231
Query: 262 KAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRL 306
+A + F PG+ I +I+ A F++ ++ +PR+
Sbjct: 232 EA---RKVMFTHPEMMFAPGIAIVIIVMAFNFLSDALQIAIDPRI 273
>gi|10954944 Probable accE [Agrobacterium tumefaciens]
>gi|6498297|dbj|BAA87749.1| (AB016260) Probable accE
[Agrobacterium tumefaciens]
Length = 286
Score = 113 bits (281), Expect = 2e-24
Identities = 69/227 (30%), Positives = 121/227 (52%), Gaps = 9/227 (3%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H+LGTD G+D+ + ++ +TSL IA++ ++I +G T+G ++ + GG VD L+M F
Sbjct: 66 HLLGTDYLGRDVLSNILVATQTSLMIALVGSLICAFIGTTLGFLAAHFGGWVDNLIMGFA 125
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
+ +P I+ + V AFL SP + +++G+ ++ AR R LS + ++
Sbjct: 126 DAKASVPFIIFALGVLAFL-GSSPLILLMLVGVASFERYARLTRGLVLSANQEGYAEAAR 184
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG---PTTVVSLGVIL 260
IVG+ LRI ++PN+ + + L IL + L F+GLG P T SLG+++
Sbjct: 185 IVGVPSLRIYVRHVLPNIAGPLIVQITLNFPDIILLESGLSFLGLGIQPPET--SLGLMV 242
Query: 261 QKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
+ A+ WW PG++I L ++ + + + F+ RLR
Sbjct: 243 ADGRNYIAIA---WWLIALPGVVIVLTTLSISLLGDYLRDRFDARLR 286
>gb|AAG20459.1| (AE005118) oligopeptide transport permease protein; AppC
[Halobacterium sp. NRC-1]
Length = 386
Score = 113 bits (281), Expect = 2e-24
Identities = 72/299 (24%), Positives = 146/299 (48%), Gaps = 26/299 (8%)
Query: 13 RNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPA--YSSKTLPPMTREN 70
+N +G ++ + ++GPL I+ P ++++++PP+
Sbjct: 99 KNQVAVVALGWLAVMFVVGVLGPLL---------------IDPPTTQFTNQSVPPVGMST 143
Query: 71 ITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGY 130
T+ KT + LGT +G+ + +VYG+R S+ + ++A I +G +G V+ +
Sbjct: 144 -TVGGVVKTGTWQYPLGTSAKGQGILTLVVYGMRVSMEVGLIATIFSVIIGSAVGAVAAF 202
Query: 131 KGGI----VDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSV 186
+ +DELLM +V++ V P +LL+L+ +L + L+ G +W +AR+V
Sbjct: 203 ATSVGRGRIDELLMRYVDVQSVFPDFMLLLLLT-YLFGSELWMIILLFGFFSWEGIARTV 261
Query: 187 RAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFI 246
R + L + E++ ++ G + L I+ + ++PN + I ++ + + G IL A+L F+
Sbjct: 262 RGEALQRASEEYITAAEASGANMLYIVRQHLIPNSANSIIISATVGIPGFILGEASLAFL 321
Query: 247 GLGPTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
G T S G + ++ A WW PG+ + L + + ++V + + +PR
Sbjct: 322 GFSDPTTYSWGRTIATGQVNLA---SAWWIATIPGVFLFLTVLSFYYVGESLRDAMDPR 377
>pir||G75529 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458041|gb|AAF09944.1|AE001896_9
(AE001896) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 339
Score = 113 bits (280), Expect = 3e-24
Identities = 80/317 (25%), Positives = 149/317 (46%), Gaps = 19/317 (5%)
Query: 8 LRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASD---GLYYEKVGKIELPAYSSKTL- 63
LR RN G ++ F L A++ PL + L E G+I P ++ K +
Sbjct: 25 LRKLRRNPLAVTGFVIVLLFGLMALLAPLIAKPTGNCLRDLGMETQGQIYQPGFALKAIF 84
Query: 64 --PPMTRENITIMYTGKTIEVLHILGT-----DKEGKDLYAELVYGLRTSLWIAVLAAII 116
PP + + + + + GT G +++ L++G RT+L ++ + I
Sbjct: 85 ASPPECYKMERVSFAQEPAPASSVTGTFAPFGTVNGYNIFYGLIWGTRTALKMSFIIVGI 144
Query: 117 GTTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQ-----A 171
++GI IG +SG+ GG VD L+ +N++ +P +VL + + L A++P
Sbjct: 145 TLSIGILIGAISGFYGGWVDGLIQGIINVIYALPPLVLTVTILTILRAKNPGGDPTGPII 204
Query: 172 LIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGIL 231
+ +T W AR +R L + E+V+ ++ +G D+R+I ++PN ++ +F +L
Sbjct: 205 FAMCITGWATYARVIRGDILKTRQLEYVDAARALGARDMRMILRHVVPNSLTTVFTLAVL 264
Query: 232 QVSGAILASATLDFIGLGPTTVVS-LGVILQKAIMHNALQFGWWWWFIPPGLIITLIITA 290
++ L+ A L F+GLG + S G ++ A L+ +W+ P + I L A
Sbjct: 265 ALATVPLSVAALSFLGLGFESGYSEWGQLIDFA--RAWLKPDYWYVLAFPAIFIVLFSLA 322
Query: 291 LFFVNLGMEEVFNPRLR 307
G+ + +P+ R
Sbjct: 323 FNLFGDGLRDALDPKTR 339
>pir||T03434 probable transport protein accE - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153181|gb|AAC17201.1| (AF010180) AccE
[Agrobacterium tumefaciens]
Length = 286
Score = 111 bits (276), Expect = 8e-24
Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 9/227 (3%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H+LGTD G+D+ + ++ +TSL IA++ ++I +G T+G ++ + GG VD L+M F
Sbjct: 66 HLLGTDYLGRDVLSNILVATQTSLMIALVGSLICAFIGTTLGFLAAHFGGWVDNLIMGFA 125
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
+ +P I+ + V AFL SP + + +G+ ++ AR R LS + ++
Sbjct: 126 DAKASVPFIIFALGVLAFL-GSSPLILLMRVGVASFERYARLTRGLVLSANQEGYAEAAR 184
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG---PTTVVSLGVIL 260
IVG+ LRI ++PN+ + + L IL + L F+GLG P T SLG+++
Sbjct: 185 IVGVPSLRIYVRHVLPNIAGPLIVQITLNFPDIILLESGLSFLGLGIQPPET--SLGLMV 242
Query: 261 QKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
+ A+ WW PG++I L ++ + + + F+ RLR
Sbjct: 243 ADGRNYIAIA---WWLIALPGVVIVLTTLSISLLGDYLRDRFDARLR 286
>pir||H72451 probable peptide transport system permease protein APE2260 -
Aeropyrum pernix (strain K1) >gi|5105961|dbj|BAA81272.1|
(AP000064) 280aa long hypothetical peptide transport
system permease protein [Aeropyrum pernix]
Length = 280
Score = 111 bits (276), Expect = 8e-24
Identities = 77/289 (26%), Positives = 141/289 (48%), Gaps = 32/289 (11%)
Query: 20 GIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYTGKT 79
G+ +++F+++ A+ P P++ + KV ++P + S PP +
Sbjct: 19 GLAIVAFYLVVALAAPYIAPYSP----HSKVS--DVPEHPS---PPSLK----------- 58
Query: 80 IEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELL 139
H GT++ G D+++ +V G R L + +L++++G +G+ +GLVSGY GG VD +L
Sbjct: 59 ----HPFGTNEIGYDMFSRVVLGTRIVLKVVLLSSVMGLAVGVPLGLVSGYFGGPVDRVL 114
Query: 140 MMFVNIMLVIPSIVLLILVAAFLEARSPEV--QALIIGLTNWPWVARSVRAQTLSLKNRE 197
+ ++ + P IVL I +A+ L P V A+ + + P R RA+ + +K ++
Sbjct: 115 SVVMDSLYAFPGIVLAIAIASVL---GPSVLNAAIALMVVYVPAYFRMTRARVIEIKTQD 171
Query: 198 FVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPT-TVVSL 256
++ +++G RI+F ++P ++ + + L + AIL A L F GL T
Sbjct: 172 YIVALRVLGAPHSRIMFRHVLPGVMPTVLVVYGLASADAILTEAGLSFFGLVVTYPAPDW 231
Query: 257 GVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
G+ + I G WW + PGL I + + G+ E F R
Sbjct: 232 GLDISYGI--KQFLSGSWWLTLFPGLAILTLALGFAMIGEGLAERFRAR 278
>gb|AAG20590.1| (AE005129) dipeptide ABC transporter permease; DppC1 [Halobacterium
sp. NRC-1]
Length = 315
Score = 111 bits (275), Expect = 1e-23
Identities = 58/224 (25%), Positives = 114/224 (50%), Gaps = 3/224 (1%)
Query: 85 ILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVN 144
+ GTD G+D++ +YG ++ + T LG+ +G+++ Y + D ++M ++
Sbjct: 90 LFGTDAAGRDIFKRTLYGAWIAIKYGTVTVAASTFLGVALGIIAAYYSDLTDNVIMRTMD 149
Query: 145 IMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKI 204
++L PS++L + + A A +V + + L P AR VR L + E++ ++
Sbjct: 150 VLLAFPSLLLALALVAIFGAGLWKV-VIALTLVYTPRFARVVRGAALKVLEDEYIEATEA 208
Query: 205 VGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTT-VVSLGVILQKA 263
+G +D R++ + PN ++ + + L AI+ A L F+G G + S G++L
Sbjct: 209 LGATDARVLARHVFPNTLAPVTVQSTLNYGLAIIDFAALSFLGFGAAPGMPSWGLMLSNG 268
Query: 264 IMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
+ N L G WW + PGL + +++ + GM + +PR+R
Sbjct: 269 VT-NGLLTGKWWMSLFPGLFLAILVLGFNLLGDGMRDALDPRMR 311
>pir||C71510 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328913|gb|AAC68078.1| (AE001321)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 578
Score = 111 bits (274), Expect = 1e-23
Identities = 62/215 (28%), Positives = 115/215 (52%), Gaps = 3/215 (1%)
Query: 93 KDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSI 152
KDL A L++G+R ++ + L I +GI +GL+SGY GG VD LL I +P +
Sbjct: 366 KDLLASLIFGIRIAIVVGGLGVSIALFIGIIVGLLSGYFGGKVDMLLSRVTEIWETMPML 425
Query: 153 VLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRI 212
+L+LV A + +S + ++++G W ++R VR +TL +N +V + + S I
Sbjct: 426 FILMLVVAITQKKSLILDSVLLGCFGWVSISRYVRIETLKQRNLGYVLAATNLCYSHYHI 485
Query: 213 IFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVILQKAIMHNALQFG 272
+ +I+PN+I + + I A L F+GLG + S G +L++ + +
Sbjct: 486 MVHQILPNVIVPVISLLPFSMMAMISCEAGLTFLGLGEESSASWGNLLREGVTAFPSESA 545
Query: 273 WWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
W PP +++TL++ A+ + G+ + +P+++
Sbjct: 546 ILW---PPAIMLTLLLMAIAVIGDGIRDALDPKMQ 577
>pir||E83419 probable permease of ABC transporter PA1808 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9947792|gb|AAG05197.1|AE004607_3 (AE004607) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 339
Score = 110 bits (273), Expect = 2e-23
Identities = 71/223 (31%), Positives = 128/223 (56%), Gaps = 10/223 (4%)
Query: 86 LGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNI 145
LGTD + +D+ A ++YG R S+ A+ ++ + +G+T+G + GY GG VD L F+ +
Sbjct: 123 LGTDDQARDVLARVIYGFRVSILFALTLTVLSSLIGVTVGALQGYYGGWVDLLGQRFLEV 182
Query: 146 MLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIV 205
+P + LLI++A+F++ + +++ L +W + VRA+ L +N E+V ++ +
Sbjct: 183 WSGLPVLYLLIILASFVQPNFWWLLGIML-LFSWMSLVDVVRAEFLRGRNLEYVRAARAL 241
Query: 206 GLSDLRIIFEEIMPN-MISYI-FMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQK 262
G+ + I+F I+PN MIS + FM IL +GAI +LDF+G G P SLG ++ +
Sbjct: 242 GMRNSAIMFRHILPNAMISTLTFMPFIL--TGAIGTLTSLDFLGFGLPPGAPSLGELVAQ 299
Query: 263 AIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
+ LQ W I +++ ++++ L F+ + F+PR
Sbjct: 300 G--KSNLQAPWLG--ISAFVVLAVMLSLLVFIGEAARDAFDPR 338
>pir||F81668 peptide ABC transporter, permease protein, probable TC0763
[imported] - Chlamydia muridarum (strain Nigg)
>gi|7190788|gb|AAF39566.1| (AE002344) peptide ABC
transporter, permease protein, putative [Chlamydia
muridarum]
Length = 578
Score = 109 bits (271), Expect = 3e-23
Identities = 60/216 (27%), Positives = 115/216 (52%), Gaps = 3/216 (1%)
Query: 93 KDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSI 152
KDL A L++G+R ++ + L I +G +GL+SGY GG +D LL I +P +
Sbjct: 366 KDLLASLIFGIRIAIVVGGLGVTIALFIGTIVGLLSGYFGGKIDMLLSRVTEIWETMPML 425
Query: 153 VLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRI 212
+L+LV A + +S + ++++G W ++R VR +TL +N +V + + S I
Sbjct: 426 FILMLVVAITQKKSLILDSVLLGCFGWVSISRYVRIETLKQRNLGYVLAATNLCYSHYHI 485
Query: 213 IFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVILQKAIMHNALQFG 272
+ +I+PN+I + + I A L F+GLG + S G +L++ + +
Sbjct: 486 MVHQILPNVIVPVISLLPFSMMAMISCEAGLTFLGLGEESSASWGNLLREGVSAFPSESA 545
Query: 273 WWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLRG 308
W PP +++TL++ ++ + G+ + +P+++G
Sbjct: 546 ILW---PPAVMLTLLLMSIAVIGDGIRDALDPKMQG 578
>sp|P75799|YLID_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YLID
>gi|7442415|pir||H64820 probable oligopeptide transport
protein b0832 - Escherichia coli
>gi|1787054|gb|AAC73919.1| (AE000185) putative transport
system permease protein [Escherichia coli K12]
>gi|4062409|dbj|BAA35527.1| (D90721) Transmembrane
protein dppC [Escherichia coli]
>gi|4062417|dbj|BAA35535.1| (D90722) Transmembrane
protein dppC [Escherichia coli]
Length = 303
Score = 109 bits (269), Expect = 5e-23
Identities = 68/232 (29%), Positives = 120/232 (51%), Gaps = 17/232 (7%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H G D G+D+++ ++ G + SL V A IG +G +GL++GY G D L+M
Sbjct: 82 HWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRIC 141
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
+++ P I+L I V A L + V + + + + P AR VR TL LK + F+ ++
Sbjct: 142 DVLFAFPGILLAIAVVAVLGSGIANV-IIAVAIFSIPAFARLVRGNTLVLKQQTFIESAR 200
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG--PTTVVSLGVILQ 261
+G SD+ ++ I+P +S I + +++ +I+++A+L F+GLG P T G +L
Sbjct: 201 SIGASDMTVLLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPT-PEWGAMLN 259
Query: 262 KA-----IMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLRG 308
+A I + F P L I L + A + G+ + +P+++G
Sbjct: 260 EARADMVIAPHVAVF--------PALAIFLTVLAFNLLGDGLRDALDPKIKG 303
>pir||C64551 oligopeptide ABC transporter, permease protein - Helicobacter
pylori (strain 26695) >gi|2313343|gb|AAD07318.1|
(AE000544) oligopeptide ABC transporter, permease
protein (oppC) [Helicobacter pylori 26695]
Length = 338
Score = 108 bits (266), Expect = 1e-22
Identities = 62/224 (27%), Positives = 118/224 (52%), Gaps = 6/224 (2%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H+LGTD + +D+ A LVYG R SL +L + +G+++G GY GG+VD +
Sbjct: 118 HLLGTDDQARDVLARLVYGYRVSLIFGILLTLFSVLIGVSLGAFQGYYGGLVDLVGQRLS 177
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
I IP + LLI++++ + + L++ L +W +++ VR + L +N ++ ++
Sbjct: 178 EIWSAIPMLFLLIVISSAFNSNFWIILFLVL-LFSWMGLSQVVRTEFLKARNMDYTKAAR 236
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQK 262
+G++DL+IIF ++PN + ++ +I +LDF+G G P SLG ++ +
Sbjct: 237 ALGVNDLKIIFYHVLPNALVATITYVPFLMAASISTLVSLDFLGFGMPIGSASLGELVNQ 296
Query: 263 AIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRL 306
+ I + I+L+++ L F+ G+ + FN +
Sbjct: 297 GKDNLTTPH----LAIVAFVAISLLLSVLVFIGEGVRDAFNANM 336
>pir||F71957 ABC transporter, permease - Helicobacter pylori (strain J99)
>gi|4154752|gb|AAD05812.1| (AE001461) ABC transporter,
permease [Helicobacter pylori J99]
Length = 338
Score = 107 bits (264), Expect = 2e-22
Identities = 61/224 (27%), Positives = 118/224 (52%), Gaps = 6/224 (2%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H+LGTD + +D+ A LVYG R SL +L + +G+++G GY GG+VD +
Sbjct: 118 HLLGTDDQARDVLARLVYGYRVSLVFGILLTLFSVLIGVSLGAFQGYYGGLVDLVGQRLS 177
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
I IP + LLI++++ + + L++ L +W +++ VR + L +N ++ ++
Sbjct: 178 EIWSAIPMLFLLIVISSAFNSNFWIILFLVL-LFSWMGLSQVVRTEFLKARNMDYTKAAR 236
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQK 262
+G++DL+IIF ++PN + ++ +I +LDF+G G P SLG ++ +
Sbjct: 237 ALGVNDLKIIFYHVLPNALVATITYIPFLMAASISTLVSLDFLGFGMPIGSASLGELVNQ 296
Query: 263 AIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRL 306
+ + + I+L+++ L F+ G+ + FN +
Sbjct: 297 GKDNLTTPH----LAVVAFVAISLLLSVLVFIGEGVRDAFNANM 336
>gb|AAC69844.1| (AF076684) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 276
Score = 106 bits (262), Expect = 4e-22
Identities = 54/181 (29%), Positives = 104/181 (56%), Gaps = 5/181 (2%)
Query: 71 ITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGY 130
+ + T + I LH+LGTD G+DL+ ++ G R++L++ VL I +G+T+GL +GY
Sbjct: 37 VNLSQTFEPISWLHLLGTDDYGRDLFTRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGY 96
Query: 131 KGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWV--ARSVRA 188
K G ++ L++ F+++ L IP +++I +A+F + P + L+I +T W+ R R+
Sbjct: 97 KKGWIERLVLRFIDVGLSIPEFIIMIALASFFQ---PSLWNLVISITLIKWMNYTRLTRS 153
Query: 189 QTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGL 248
S N+ ++ ++++ + I+ + P +I I + ++ IL ++L FIGL
Sbjct: 154 IVNSEMNKPYIKMAQLFHVPTRTILIRHLTPKIIPAIIVLMVVDFGKIILYISSLSFIGL 213
Query: 249 G 249
G
Sbjct: 214 G 214
>gb|AAC18098.1| (AF058302) membrane component of putative ABC transporter
[Streptomyces roseofulvus]
Length = 274
Score = 105 bits (260), Expect = 6e-22
Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 5/217 (2%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H LG D G+DLYA +V+G SL A A +G G +G V+G G VD ++M V
Sbjct: 56 HPLGADHVGRDLYARVVHGTARSLGTAFAAVALGVLAGGALGAVAGVAGRAVDAVVMRVV 115
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
+++L +P ++L + V + L + +V A +G+ +AR RAQ ++ E+V ++
Sbjct: 116 DVLLAVPGLLLSLAVVSALGFGTAQV-ACAVGVGTVGGIARVSRAQVRRVRGGEYVEAAR 174
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQK 262
+ G++ I+ I+PN + + + A+L A+L F+G G P G ++
Sbjct: 175 LAGVAGPLILLRHIVPNAAPPVLALAVTECGTAVLGVASLGFLGFGAPPPAPEWGALIST 234
Query: 263 AIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGME 299
+ L WW + PGL++ ++ AL V +E
Sbjct: 235 G--RDYLVSAWWLTTL-PGLVLVALVVALHRVGRALE 268
>pir||A83389 probable permease of ABC transporter PA2060 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948068|gb|AAG05448.1|AE004632_7 (AE004632) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 338
Score = 105 bits (259), Expect = 8e-22
Identities = 66/222 (29%), Positives = 122/222 (54%), Gaps = 8/222 (3%)
Query: 86 LGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNI 145
LGTD +G+D+ A ++YGLR S+ A+ + + LGI G V GY GG +D F+ +
Sbjct: 122 LGTDDQGRDVLARVIYGLRLSILFALGLTLASSLLGICAGAVQGYYGGWIDLFGQRFIEV 181
Query: 146 MLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIV 205
+P + LLI++A+ ++ + A+++ L +W + VRA+ L ++ E+V ++ +
Sbjct: 182 WSGLPMLYLLIILASLVQPGVGWLLAIML-LFSWTSLVDVVRAEFLRGRHLEYVKAARTL 240
Query: 206 GLSDLRIIFEEIMPN-MISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQKA 263
GL D ++F I+PN M++ + L + GA+ LDF+G G P SLG ++ +
Sbjct: 241 GLGDAGVMFRHILPNAMVATLTFLPFL-LCGAVTTLTALDFLGFGLPPGSPSLGELVGQG 299
Query: 264 IMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
+ LQ W + +++ +++ L F+ + + F+PR
Sbjct: 300 --RDNLQAPWLG--LTVFVVLATLLSLLVFIGEAVRDAFDPR 337
>sp|Q53192|Y4TQ_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE PROTEIN Y4TQ
>gi|1486421|emb|CAA92399.1| (Z68203) OppC homologue
[Rhizobium sp.] >gi|2182647|gb|AAB91870.1| (AE000098)
Y4tQ [Rhizobium sp. NGR234]
Length = 291
Score = 104 bits (257), Expect = 1e-21
Identities = 77/302 (25%), Positives = 146/302 (47%), Gaps = 37/302 (12%)
Query: 7 ILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPM 66
++R+A R+ G G++ +L A+ PL ++ D L + +++ P+ S
Sbjct: 19 VVRIAKRHPLVLLGGGILLLLILLALAAPL---YSGDPLVMDPFKRLQQPSASM------ 69
Query: 67 TRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGL 126
GTD G+D++A +YG R SL + +L+A+ G+ IG+
Sbjct: 70 ------------------WFGTDNLGRDVFARTIYGARISLIVGLLSAVCAAVCGLLIGV 111
Query: 127 VSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALI--IGLTNWPWVAR 184
++GY D ++M ++ ++ IP+ +L I A L P + LI I + P V R
Sbjct: 112 IAGY-SRTFDNIIMRVMDGLMSIPTFLLAI---ALLSLTGPGIGILIVAIAIPETPAVTR 167
Query: 185 SVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLD 244
VR+ LS+++R +V + G R+++ I+P+ I + + + AI+ A L
Sbjct: 168 LVRSVVLSVRSRPYVEAALCGGARLPRVLWRHILPSTIPPLMVQSATVCASAIMTEAGLS 227
Query: 245 FIGLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFN 303
FIG+G P+ + S G ++ + + A+ PGL + + + A+ + G+ ++F+
Sbjct: 228 FIGVGVPSEIPSWGNMIANSRLFLAIA---PLTIFAPGLCLAVTVLAVNLLGDGLRDMFD 284
Query: 304 PR 305
PR
Sbjct: 285 PR 286
>gi|10955081 agaC [Agrobacterium tumefaciens] >gi|11277275|pir||T45530 probable
oligopeptide transport protein agaC [imported] -
Agrobacterium tumefaciens plasmid pTi15955
>gi|2665706|gb|AAB88466.1| (AF242881) agaC
[Agrobacterium tumefaciens]
Length = 275
Score = 103 bits (254), Expect = 3e-21
Identities = 64/229 (27%), Positives = 118/229 (50%), Gaps = 13/229 (5%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H LGTD+ G+D+ + L+ G+R ++ +AV++ II G G++ Y + +M V
Sbjct: 53 HWLGTDEFGRDILSRLLIGIRPTMLVAVISTIIAAVGGTACGIIGAYSRPTISFFVMRAV 112
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
+IML P+I+L +L F + + +++IG+ P AR ++ L + ++EFV
Sbjct: 113 DIMLSFPAILLALLAVGFWRSGVASL-SVVIGIIFIPQFARVAQSAALQVISQEFVEAEH 171
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-----PTTVVSLGV 258
+G LR++ I+PN++S + + L ++ AIL + L F+GLG P+ +G
Sbjct: 172 AMGARYLRVVMRAILPNILSPLVVQATLTIAAAILLESGLSFLGLGIVPPEPSWGQMIGT 231
Query: 259 ILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
+ + N + W P L + L + A+ + + + +PRLR
Sbjct: 232 -ARGYLGQNPMYVVW------PSLCLALTVLAINVLGDALRDHLDPRLR 273
>dbj|BAB04288.1| (AP001509) nickel transport system (permease) [Bacillus halodurans]
Length = 277
Score = 103 bits (254), Expect = 3e-21
Identities = 58/165 (35%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 86 LGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNI 145
LGTD+ G+ + L++G R SL A L I +G+ +G ++GY+GG +D +LM F
Sbjct: 58 LGTDQLGRCNLSRLLFGARVSLGFATLIFISSLGIGLLVGAIAGYRGGWIDSVLMRFCEG 117
Query: 146 MLVIPSIVLLI-LVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKI 204
++ P++VL++ LV F V AL+ + W + AR R+ +SLK + F+ ++I
Sbjct: 118 VMAFPNLVLVLGLVGLFGPGLWQVVLALV--MVQWVYYARMFRSMIVSLKEQNFITAARI 175
Query: 205 VGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG 249
G S +II I+PN++ I + G L++ AI+ + L F+GLG
Sbjct: 176 SGSSPWKIIRRHIIPNVLPPIVVIGTLEMGWAIMDISALSFLGLG 220
>dbj|BAB05795.1| (AP001514) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 293
Score = 102 bits (253), Expect = 4e-21
Identities = 63/245 (25%), Positives = 124/245 (49%), Gaps = 11/245 (4%)
Query: 65 PMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITI 124
P ++ + Y + E ++LG D G+ + + L+YG+R S+ ++A + +G+ +
Sbjct: 37 PPNEVHMELRYASPSWE--YLLGNDHLGRCILSRLIYGIRPSVLSVLVALFLTVLIGLVL 94
Query: 125 GLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIG--LTNWPWV 182
G ++GY G VD ++M +IML P V+ + AF+ ++ ++I L W W
Sbjct: 95 GFIAGYFRGKVDAVIMRICDIMLSFPGYVMPL---AFIGIFGVGLENILIAFILMKWAWF 151
Query: 183 ARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASAT 242
AR++R + ++V +K G+ DL+II++ I+P + + + +S IL +
Sbjct: 152 ARAIRTSVMQYSQVDYVKFAKASGIHDLKIIYKHIVPVTFADVAVISSGSISSMILQISG 211
Query: 243 LDFIGLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEV 301
F+GLG G++L +A + F + PGL I +++ A F++ ++
Sbjct: 212 FSFLGLGIQAPHAEWGMMLNEA---RNVMFSRPELMLAPGLAIIIVVAAFNFLSDALQVA 268
Query: 302 FNPRL 306
+P+L
Sbjct: 269 LDPKL 273
>sp|P33592|NIKC_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NIKC
>gi|628768|pir||S39596 nikC protein - Escherichia coli
>gi|581141|emb|CAA51661.1| (X73143) NikC [Escherichia
coli] >gi|912461|gb|AAB18453.1| (U00039) nikC
[Escherichia coli] >gi|1789889|gb|AAC76503.1| (AE000423)
transport of nickel, membrane protein [Escherichia coli
K12]
Length = 277
Score = 102 bits (252), Expect = 5e-21
Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 11/227 (4%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H LGTD G+D+++ L+ R SL + ++ TLG+ IG +G GG VD+ M
Sbjct: 52 HWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQATMRVA 111
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
++ + P+ +L + L V + I L++W W AR VR+ +SL+ REFV S+
Sbjct: 112 DMFMTFPTSILSFFMVGVLGTGLTNV-IIAIALSHWAWYARMVRSLVISLRQREFVLASR 170
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTT-VVSLGVILQK 262
+ G +R+ + + +I + + L + +L A + F+GLG T GV++
Sbjct: 171 LSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVAGMSFLGLGVTAPTAEWGVMIND 230
Query: 263 A---IMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRL 306
A I LQ W PGL + + + A V + + +P L
Sbjct: 231 ARQYIWTQPLQMFW------PGLALFISVMAFNLVGDALRDHLDPHL 271
>pir||A70789 probable peptidetransport system permease - Mycobacterium
tuberculosis (strain H37RV) >gi|2960088|emb|CAA17986.1|
(AL022121) dppC [Mycobacterium tuberculosis]
Length = 266
Score = 102 bits (252), Expect = 5e-21
Identities = 63/227 (27%), Positives = 115/227 (49%), Gaps = 8/227 (3%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H GTD +G D+Y+ VYG R S+ + + A + +G +G ++G+ G +D ++
Sbjct: 41 HWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVT 100
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
++ L +P ++ I++ + R+ I+ L WP VAR R L ++ ++V +K
Sbjct: 101 DVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAK 160
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQK 262
+GL+ +I+ +PN + + + + I+ ATL ++G+G PT+VVS G +
Sbjct: 161 ALGLNRFQILLRHALPNAVGPVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDIN- 219
Query: 263 AIMHNALQFGWWWWFIPPGLIITLIITALFFVNLG--MEEVFNPRLR 307
+ L+ G F P G L IT L F+ +G + + +P R
Sbjct: 220 -VAQTRLRSGSPILFYPAG---ALAITVLAFMMMGDALRDALDPASR 262
>dbj|BAB05517.1| (AP001513) nickel ABC transporter (permease) [Bacillus halodurans]
Length = 283
Score = 101 bits (249), Expect = 1e-20
Identities = 55/187 (29%), Positives = 106/187 (56%), Gaps = 8/187 (4%)
Query: 68 RENITIMYTGKTIEVL---HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITI 124
R + T+ G+ ++ + H LGTD G+D+ L+ G + ++ +++A ++ +GI
Sbjct: 41 RHDPTLANMGERLQGMSLQHPLGTDHLGRDVLTRLLLGAQQTVGYSLMALLVALFIGIPF 100
Query: 125 GLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWV-- 182
GL+SGYKGGIVD + M + L P ++ I+++ L P + L++ + WV
Sbjct: 101 GLISGYKGGIVDRVFMRVADGFLAFPDTIVAIVLSGLL---GPGIGNLVLAIVMVKWVSY 157
Query: 183 ARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASAT 242
AR VR+ L+ +++V +++I GLS +I+ + + P+++ ++ + L + IL +
Sbjct: 158 ARLVRSTVLTEVEKDYVAIARINGLSSSKIMRKHLFPHIVGHVLVMATLDLGKIILLISA 217
Query: 243 LDFIGLG 249
L +IGLG
Sbjct: 218 LSYIGLG 224
>sp|P77463|YDDQ_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YDDQ
>gi|7442414|pir||H64901 probable oligopeptide transport
protein b1485 - Escherichia coli
>gi|1742425|dbj|BAA15140.1| (D90789) Dipeptide transport
system permease protein DppC. [Escherichia coli]
>gi|1742436|dbj|BAA15150.1| (D90790) Dipeptide transport
system permease protein DppC. [Escherichia coli]
>gi|1787760|gb|AAC74558.1| (AE000245) putative transport
protein [Escherichia coli K12]
Length = 298
Score = 100 bits (246), Expect = 3e-20
Identities = 67/227 (29%), Positives = 110/227 (47%), Gaps = 5/227 (2%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H GTD+ G+DL++ ++ G + S+ ++ I +G +G +SG GG D ++M +
Sbjct: 74 HWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIM 133
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
+IML IPS+VL + +AA L S L I + P+ R R Q L ++ +V +K
Sbjct: 134 DIMLSIPSLVLTMALAAAL-GPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAK 192
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQK 262
G S +I I+ N + + + L + AIL +ATL FIGLG G ++
Sbjct: 193 TFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVAN 252
Query: 263 AIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLRGE 309
+ Q WW+ PG I L G+ ++ +P+ G+
Sbjct: 253 GRNYVLDQ---WWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGK 296
>gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhodococcus fascians]
Length = 714
Score = 100 bits (246), Expect = 3e-20
Identities = 66/218 (30%), Positives = 110/218 (50%), Gaps = 9/218 (4%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H GTD G+D+ + L+ G SL +V+ + + + IGL SGY G D LLM +
Sbjct: 364 HWFGTDGLGRDVLSRLLAGASVSLRFSVIVVVTALIVALPIGLFSGYIGRWPDTLLMRIM 423
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEV--QALIIGLTNWPWVARSVRAQTLSLKNREFVNL 201
+ P+IVL I + L P + + + + P AR +RAQ LS++ F++
Sbjct: 424 EGIHSFPAIVLAIAIVGIL---GPSLLNAGIAVAVAVVPGFARLIRAQALSVREEVFIDA 480
Query: 202 SKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVIL 260
S+ +G RI+ + PN++S + + + + A+LA A L ++GLG S G +L
Sbjct: 481 SRAIGTPTRRILLRHLFPNVLSPLIVQVAVVLGFALLAEAGLSYLGLGVQPPQASWGSML 540
Query: 261 QKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGM 298
++A Q W +PPG+ I L++ A + G+
Sbjct: 541 RQA---TDSQLTNPWGVLPPGIAIVLVVLAFNTIGEGL 575
>dbj|BAA94701.1| (AB026907) dipeptide transporter DppC homolog [Ochrobactrum
anthropi]
Length = 291
Score = 99.8 bits (245), Expect = 4e-20
Identities = 72/286 (25%), Positives = 125/286 (43%), Gaps = 39/286 (13%)
Query: 18 KFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYTG 77
K G +++ L AI P P+ + +E + +PP +
Sbjct: 28 KIGSAIMALLGLVAIFAPFIAPYDPNYQDFEAI-----------LVPPSLK--------- 67
Query: 78 KTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDE 137
H+ GTD G+D+++ +V+G R L + L + G+ IG +GY GG D
Sbjct: 68 ------HLFGTDNLGRDVFSRVVFGARIDLVVGFLLTYVPMIYGVLIGAYAGYIGGRFDA 121
Query: 138 LLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIG--LTNWPWVARSVRAQTLSLKN 195
LM +++ + P +VL++++ A L P +Q + I + W AR RA+ + +
Sbjct: 122 TLMRIIDVAMAFPFLVLIVVILAIL---GPGIQNIYIAIFIVAWTMYARLARAEMMVERT 178
Query: 196 REFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG---PTT 252
++++ +K++G RIIF +PN+I+ + I+ + L FIGLG P
Sbjct: 179 KDYMVAAKVLGFPRSRIIFLHGLPNVINSSIVFSTSDFVLNIVLVSGLSFIGLGIQPPAP 238
Query: 253 VVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGM 298
+ + M A WW + PG I L AL + G+
Sbjct: 239 EWGSMIAEGRDFMRQA-----WWIAVLPGFAIVLTGMALVLIGDGL 279
>gb|AAG20450.1| (AE005117) dipeptide ABC transporter permease; DppC2 [Halobacterium
sp. NRC-1]
Length = 526
Score = 99.8 bits (245), Expect = 4e-20
Identities = 81/325 (24%), Positives = 154/325 (46%), Gaps = 35/325 (10%)
Query: 13 RNNKF-KFGIGLISFFVLFAIIGPLFTP----------FASDGLYY-EKVGKIE-LPA-- 57
RN+ + KFGI ++ F+ ++ G P + ++ Y + G +E +PA
Sbjct: 195 RNHSWGKFGIVVLVLFLTMSLFGTTLAPSTVQQNITASYGNEVQYVSDDTGAVETIPAGE 254
Query: 58 --YSSKTLPPMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAI 115
++SK+ +N+ +M T H GT G+DL+ ++ G T+L + +A
Sbjct: 255 ANFNSKS-KGNPAQNVGVM-TYDDYGRFHPFGTLPNGRDLFTYMMGGAETTLMVTGIAIG 312
Query: 116 IGTTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPE------- 168
+ + + LVS Y GG VD ++ + ++ IP ++LLI+V+ + +
Sbjct: 313 MAGFIAALLALVSSYYGGTVDLSVLTLADGIVSIPQLLLLIMVSVVFQDHWLKSVFNGGL 372
Query: 169 VQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMA 228
+ AL+ GLT WP + RS+R L + E+V+ +K G + + ++P ++ Y+ +
Sbjct: 373 LLALVFGLTTWPVLWRSLRGPALQVAEEEWVDAAKSFGQQPTVTMRKHMLPYVLGYLLIY 432
Query: 229 GILQVSGAILASATLDFIGLG-----PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLI 283
+ V G ++A A+L F+G G PT + + + +A W + PGLI
Sbjct: 433 ASMTVGGIVIAMASLSFLGNGLGITPPTPAWGRAISQGQPYVSSAS----WHIALIPGLI 488
Query: 284 ITLIITALFFVNLGMEEVFNPRLRG 308
I +++T + G+ + +P G
Sbjct: 489 IVVLVTGANALGDGIRDAIDPESEG 513
>pir||T45277 oligopeptide transport integral membrane protein bldKA [imported] -
Streptomyces coelicolor >gi|1532201|gb|AAB09554.1|
(U68036) BldKA [Streptomyces coelicolor A3(2)]
Length = 335
Score = 99.5 bits (244), Expect = 5e-20
Identities = 66/235 (28%), Positives = 119/235 (50%), Gaps = 32/235 (13%)
Query: 92 GKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPS 151
G+D++ +L+YG+R S+ A+ A II T LG+ IGL GY GG ++ L + + +PS
Sbjct: 109 GRDVFTQLLYGMRNSMATALAATIIMTVLGVLIGLAGGYFGGKIEYWLGRITDFFMALPS 168
Query: 152 ---------IVLLILVAAFLEARS-PEVQALIIGLT--NWPWVARSVRAQTLSLKNREFV 199
++ + VA E + A+II L+ W +AR VR +SL++REF+
Sbjct: 169 QLFFVAAMPVITTVFVAPDKETPTYVRAAAIIIVLSFLGWMSMARIVRGAKMSLRDREFI 228
Query: 200 NLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG---PTT---- 252
++I G S RI+ +E++PN+++ + L + IL+ A L F+G+G PT
Sbjct: 229 EAARISGASPWRILRKELLPNIVTPTLVQATLTLPSTILSIAFLSFVGVGYVEPTPDWGR 288
Query: 253 --VVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
+ ++ Q ++ + PG+ + + I A + + + F+P+
Sbjct: 289 MFAIGADIVEQDP-----------YYMLFPGVAMVIFIVAFNLLGDSVRDAFDPK 332
>sp|P18794|AMID_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN AMID
>gi|98017|pir||S11151 amiD protein - Streptococcus
pneumoniae >gi|47345|emb|CAA35215.1| (X17337) AmiD
protein [Streptococcus pneumoniae]
Length = 308
Score = 96.3 bits (236), Expect = 4e-19
Identities = 73/286 (25%), Positives = 133/286 (45%), Gaps = 28/286 (9%)
Query: 21 IGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYTGKTI 80
+G++ +L + I P+F+ F + V K+ + ++ Y
Sbjct: 47 LGILVAIILISFIYPMFSKFD-----FNDVSKVN---------------DFSVRYIKPNA 86
Query: 81 EVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLM 140
E H GTD GK L+ + +G R S+ I+V+A +I +G+ +G + G VD ++M
Sbjct: 87 E--HWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKS-VDRVMM 143
Query: 141 MFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVN 200
N++ IP ++++I++ + A + + +T W +A +R Q L ++ E+
Sbjct: 144 EVYNVISNIPPLLIVIVLTYSIGAGFWNL-IFAMSVTTWIGIAFMIRVQILRYRDLEYNL 202
Query: 201 LSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVI 259
S+ +G L+I+ + IMP ++S I + I A L F GLG P TV SLG +
Sbjct: 203 ASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFISYEAFLSFFGLGLPITVPSLGRL 262
Query: 260 LQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
+ N + +W P + L+ +LF V + + +PR
Sbjct: 263 ISD-YSQNVTTNAYLFWI--PLTTLVLVSLSLFVVGQNLADASDPR 305
>pir||D82170 peptide ABC transporter, permease protein VC1682 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656198|gb|AAF94832.1| (AE004246) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 295
Score = 96.3 bits (236), Expect = 4e-19
Identities = 82/293 (27%), Positives = 132/293 (44%), Gaps = 30/293 (10%)
Query: 14 NNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITI 73
NN FG+ + F L I+ P P+ D + V LPP T+
Sbjct: 26 NNLAMFGLWSLLFIALVTILSPWIAPY--DPQMHSSV----------LLLPPSWEPEGTV 73
Query: 74 MYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGG 133
Y LGTD G+D+ + L+ G S+ AVL +I T +G TIG ++G G
Sbjct: 74 DY---------FLGTDDLGRDILSRLIDGSLFSIGAAVLITLIATLVGGTIGALAGMTKG 124
Query: 134 IVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSL 193
++ L ++ ++ IPS++L I+ AFL A + L IGL P RSV +
Sbjct: 125 LLSSTLNHILDTVMSIPSLLLAIIFVAFLGAGEFNI-LLAIGLALIPRFIRSVYVAVHNE 183
Query: 194 KNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG---P 250
+++V +++ G ++ +++ I PN++ I + +S AIL L F+GLG P
Sbjct: 184 VEKDYVMAARLDGANEFYLLWHSIFPNILPIIVAEITMALSIAILDITALGFLGLGAQSP 243
Query: 251 TTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFN 303
+T G +L ++ L + W PGL I + + V G + N
Sbjct: 244 ST--EWGAMLGDSV---ELIYIAPWTVTLPGLAIMFTVVVINLVGDGARQALN 291
>emb|CAC05749.1| (AL391751) putative peptide transport system integral membrane
protein [Streptomyces coelicolor]
Length = 305
Score = 96.3 bits (236), Expect = 4e-19
Identities = 64/229 (27%), Positives = 114/229 (48%), Gaps = 12/229 (5%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
H G + +G D+Y VYG RTS+ + +LA + LG +G ++G+ GG D +L
Sbjct: 84 HPFGFNGQGCDVYTRTVYGARTSVAVGILATLGVALLGSVLGGLAGFFGGGGDAVLSRIT 143
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
+I IP ++ +++ + + + + I L WP ++R R ++ K ++V ++
Sbjct: 144 DIFFAIPVVLGGLVLLSVITSNTIWPVIGFIVLLGWPQISRIARGSVITAKQNDYVQAAR 203
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQK 262
+G S+ R++ I PN ++ + + + + I ATL F+G+G VS G+ +
Sbjct: 204 ALGASNSRLLLRHIAPNAVAPVIVVATIALGTYISLEATLSFLGVGLKPPSVSWGIDISS 263
Query: 263 A--IMHNALQFGWWWWFIPPGLIITLIITALFFVNLG--MEEVFNPRLR 307
A + NA W P G L IT L F+ LG + + +P+LR
Sbjct: 264 AAPYVRNAPHALLW----PSG---ALAITVLAFIMLGDAVRDALDPKLR 305
>sp|P33915|YEJE_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YEJE
>gi|7442468|pir||B64987 hypothetical 38.1 kD protein in
bcr 5' region - Escherichia coli (strain K-12)
>gi|405908|gb|AAA16378.1| (U00008) yejE [Escherichia
coli] >gi|1736844|dbj|BAA15987.1| (D90849) DciAC protein
[Escherichia coli] >gi|1788505|gb|AAC75240.1| (AE000307)
putative transport system permease protein [Escherichia
coli K12]
Length = 341
Score = 96.0 bits (235), Expect = 5e-19
Identities = 63/222 (28%), Positives = 117/222 (52%), Gaps = 10/222 (4%)
Query: 86 LGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNI 145
LGTD G D+ A ++YG R S+ ++ + + +G+ G + GY GG VD F+ +
Sbjct: 123 LGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEV 182
Query: 146 MLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIV 205
+P++ L+IL+++ ++ + A+ + L W + VRA+ L +N +++ ++ +
Sbjct: 183 WSGMPTLFLIILLSSVVQPNFWWLLAITV-LFGWMSLVGVVRAEFLRTRNFDYIRAAQAL 241
Query: 206 GLSDLRIIFEEIMPN--MISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQK 262
G+SD II ++PN + + F+ IL +I +LDF+G G P SLG +L +
Sbjct: 242 GVSDRSIILRHMLPNAMVATLTFLPFIL--CSSITTLTSLDFLGFGLPLGSPSLGELLLQ 299
Query: 263 AIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNP 304
N LQ W I L + ++++ L F+ + + F+P
Sbjct: 300 G--KNNLQAPWLG--ITAFLSVAILLSLLIFIGEAVRDAFDP 337
>dbj|BAA97045.1| (AB015765) SapC [Vibrio alginolyticus]
Length = 295
Score = 95.2 bits (233), Expect = 9e-19
Identities = 82/294 (27%), Positives = 131/294 (43%), Gaps = 32/294 (10%)
Query: 14 NNKFKFGIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTL-PPMTRENIT 72
N FG+ + F VL I PL PF + A S + L PP T
Sbjct: 26 NGLAMFGLWCLVFIVLITIFAPLLAPF-------------DAQAQSGELLVPPSWAPAGT 72
Query: 73 IMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKG 132
I Y LGTD G+D+ + L+ G + + AV I +G IG+++G
Sbjct: 73 IDY---------FLGTDDLGRDILSRLIMGSQLTFGAAVAITAIAAVVGCLIGVLAGMTK 123
Query: 133 GIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLS 192
G++ L ++ ++ IPS++L I+ AFL + L I L P RSV +
Sbjct: 124 GLLSSTLNHLLDTVMSIPSLLLAIIFVAFLGFGGFNI-LLAICLALIPRFIRSVYIAVHT 182
Query: 193 LKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG--- 249
++++ +++ G +D +++ I+PN+++ I L +S AIL L F+GLG
Sbjct: 183 EVEKDYIMAARLDGANDFYLLWSSILPNILTVIAAEITLALSAAILDITALGFLGLGAQA 242
Query: 250 PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFN 303
P+T G IL ++ L + W PGL I + L V G+ + N
Sbjct: 243 PST--EWGAILGDSV---ELIYIAPWTVTLPGLTIMFTVITLNLVGEGVRQALN 291
>sp|P47324|OPPC_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|1361736|pir||F64208 oligopeptide transport system
permease dciAC homolog - Mycoplasma genitalium
>gi|1045755|gb|AAC71296.1| (U39688) oligopeptide ABC
transporter, permease protein (oppC) [Mycoplasma
genitalium]
Length = 376
Score = 92.4 bits (226), Expect = 6e-18
Identities = 75/299 (25%), Positives = 129/299 (43%), Gaps = 42/299 (14%)
Query: 6 DILRLAFRNNKFKFGIGLISFFVLFAIIGPLFTPFAS--------------DGLYYEKVG 51
+I++ F+N LI VL AII PL +PF++ + K G
Sbjct: 36 EIIKRLFQNKWAILFFLLIVVIVLLAIIVPLTSPFSAVTPVSTNALAQNLPPRYLWHKPG 95
Query: 52 KI----------------------ELPAYSSKTLPPMTRENITIMYTGKTIEVLHILGTD 89
I LP+ +S L + +I + +LGT+
Sbjct: 96 DILVHKITARSIAEISQASGVLVGTLPSANSNPLATNVQYDIAPFQLQELRNYFPLLGTN 155
Query: 90 KEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSG-YKGGIVDELLMMFVNIMLV 148
G D++ L + SLWIAV+ AII G G V+G + G + D ++ + I+ +
Sbjct: 156 GLGIDIWTLLWASVAKSLWIAVVVAIIAMVFGTIYGAVAGSFVGHMADNIMSRIIEIIDI 215
Query: 149 IPSIVLLILVAAF-----LEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
+PSI+ +I++ A ++ V + W W A + R L K+ E++ +K
Sbjct: 216 VPSILWIIVLGATFRFGGVKQFDDSVVIFTLIFVFWTWPATTTRIYILKNKDTEYIQAAK 275
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVILQK 262
+G +RIIF ++P + + + + + I A+L F+GL P T + LG +L +
Sbjct: 276 TLGAHQIRIIFVHMLPVVFGRLAVVFVSLIPAVIGYEASLVFLGLKPATDIGLGALLNQ 334
>sp|P75553|OPPC_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|2146482|pir||S73941 oligopeptide transport system
permease protein amiD - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674317|gb|AAB96263.1| (AE000058)
oligopeptide transport system permease protein AmiD
[Mycoplasma pneumoniae]
Length = 376
Score = 92.1 bits (225), Expect = 8e-18
Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 8/219 (3%)
Query: 50 VGKIELPAYSSKTLPPMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWI 109
VGK LP SS L + NI + +LGT+ G D++ L + SLWI
Sbjct: 118 VGK--LPEASSNPLATNVKYNIAPYQLAELKNYYPLLGTNGLGVDIWTLLWASMAKSLWI 175
Query: 110 AVLAAIIGTTLGITIGLVSG-YKGGIVDELLMMFVNIMLVIPSIVLLILVAAF-----LE 163
A++ A++ G G ++G + G D ++ + I+ ++PSI+ +I++ A ++
Sbjct: 176 AIVVALVSMVFGTIYGAIAGSFVGRAADNIMSRIIEIIDLVPSILWIIVLGATFRFGGVK 235
Query: 164 ARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMIS 223
V + W W A + R L K+ E++ ++ +G +RIIF ++P +
Sbjct: 236 QFDDSVVIFTLIFVFWTWPAATTRIYILKNKDTEYIQAARTLGAKQIRIIFVHMLPVVTG 295
Query: 224 YIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVILQK 262
+ + + + I A+L F+GL P T V LG +L +
Sbjct: 296 RLAVVFVSLIPAVIGYEASLVFLGLKPATEVGLGALLNQ 334
>emb|CAA61524.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 308
Score = 91.7 bits (224), Expect = 1e-17
Identities = 64/221 (28%), Positives = 117/221 (51%), Gaps = 8/221 (3%)
Query: 87 GTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNIM 146
GTDK G+ L+ + YG R S+ I+V+A +I T+G+ +G + G D++++ NI+
Sbjct: 91 GTDKNGQSLFDGVGYGARNSILISVIATLINITIGVVLGAIWGVSKAF-DKVMIEIYNII 149
Query: 147 LVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIVG 206
IPS++++I++ L A + L +T W VA S+R Q L ++ E+ S+ +G
Sbjct: 150 SNIPSMLIIIVLTYSLGAGFWNL-ILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLG 208
Query: 207 LSDLRIIFEEIMPNMISYIFMAGILQVSGAILASAT-LDFIGLG-PTTVVSLGVILQKAI 264
+I + ++P ++S + M + Q+ ++S T L F G+G PTT SLG ++
Sbjct: 209 TPMYKIAVKNLLPQLVS-VIMTMLSQMLPVYVSSETFLSFFGIGLPTTTPSLGRLIAN-Y 266
Query: 265 MHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
N + +W P + + L+ L+ V + + +PR
Sbjct: 267 SSNLTTNAYLFWI--PLVTLILVSLPLYIVGQNLADASDPR 305
>emb|CAA68075.1| (X99740) oligopeptide transport system permease protein homolog
[Mycoplasma hominis]
Length = 424
Score = 88.9 bits (217), Expect = 7e-17
Identities = 59/224 (26%), Positives = 109/224 (48%), Gaps = 6/224 (2%)
Query: 85 ILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSG-YKGGIVDELLMMFV 143
+LGT G D++ Y ++ IA++ I+ +GI+IG G Y G ++D ++M +
Sbjct: 198 LLGTSSIGYDIWTTAWYATWRAIKIALIVVILEAIIGISIGAFLGFYAGKLIDTIIMRVI 257
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
I L P+++ ++L + + A + L + + WP R +++K+ EF+ +K
Sbjct: 258 EIFLAPPTLIWILLFVSIIGANEWSL-VLTLTIVGWPGFVGITRMFIITVKDEEFIIAAK 316
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIG-LGPTTVVSLGVILQK 262
+G+ R IF +P +I I + V G IL A+L F+G +LG +L +
Sbjct: 317 AIGVGTPRRIFVHALPTIIGKIANNIVRSVPGVILWIASLAFLGFFKEKKDTNLGQMLIE 376
Query: 263 AIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRL 306
A W P +I+ + +L F+ LG+ + +PR+
Sbjct: 377 ASQEVGSNI---WIIALPTIILLFLSLSLNFIALGVHDALDPRV 417
>pir||D81253 probable peptide ABC-transport system permease protein Cj1582c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968999|emb|CAB73570.1| (AL139079) putative peptide
ABC-transport system permease protein [Campylobacter
jejuni]
Length = 264
Score = 87.0 bits (212), Expect = 3e-16
Identities = 55/223 (24%), Positives = 114/223 (50%), Gaps = 7/223 (3%)
Query: 84 HILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFV 143
+ILGTD G+DL++ L++ LR SL I V +++ + ++ + M +
Sbjct: 47 YILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYV---FCMRIL 103
Query: 144 NIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSK 203
L +P+ +L++ + + + + +I L +W ++AR + ++ L+N +F +
Sbjct: 104 EFFLALPAFLLMMFFQSMITS-DVFLMIFLIALIHWCFIARIIESELKRLENLDFYKANI 162
Query: 204 IVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQK 262
++G + R F++++P + + IF I + AI ATL F GLG + +LG +L +
Sbjct: 163 VLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGTLLSE 222
Query: 263 AIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPR 305
+ A+ G WW + P L + L+ L ++ +++++ R
Sbjct: 223 S--SKAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKIWGIR 263
>gb|AAB67065.1| (U94729) putative transmembrane protein [Salmonella typhimurium]
Length = 270
Score = 80.8 bits (196), Expect = 2e-14
Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 9/232 (3%)
Query: 58 YSSKTLPPMTRENITIMYTGKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIG 117
Y++ + PP + ++ + ++ H GTD G+D++ G TSL I V AA+
Sbjct: 27 YATLSQPP----EVNLLARHLSPDIQHWFGTDNLGRDVWLRCFQGAFTSLQIGVGAALCS 82
Query: 118 TTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLT 177
+ + + V+ + D L+ + + ML +P ++LLIL+ L V A + LT
Sbjct: 83 GVIALVMAAVARIHPRL-DLLVRLITDAMLAMPHLLLLILICFTLGGGKSGVIAAV-ALT 140
Query: 178 NWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAI 237
+WP +A +RA + +++ L+ +G L P ++ +L A+
Sbjct: 141 HWPRLALILRADAERVAQSDYLTLTYRLGHGHLYCWRYHYFPALLPQWLTGTLLMFPHAV 200
Query: 238 LASATLDFIGLG-PTTVVSLGVILQKAIMHNALQFGWWWWFIPPGLIITLII 288
L SA L F+G G SLG++L A+ + G WW + PGL++ ++
Sbjct: 201 LHSAALSFLGFGLAPHEPSLGLLLADAL--RFISHGNWWLVLFPGLMLFTLV 250
>dbj|BAB13782.1| (AB038238) NikC [Vibrio parahaemolyticus]
Length = 271
Score = 78.0 bits (189), Expect = 1e-13
Identities = 59/255 (23%), Positives = 119/255 (46%), Gaps = 7/255 (2%)
Query: 38 TPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYTGKTIEVLHILGTDKEGKDLYA 97
TPF Y+ I L ++ P + + + ++ LH GTD G+D+++
Sbjct: 3 TPFMKTKSYWSTFAFIGLLIFAY--FWPNSGQEMNLLARLSPPNYLHWFGTDWLGRDMFS 60
Query: 98 ELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNIMLVIPSIVLLIL 157
+ L SL + +A ++ + + +++ + L+ V+ L +PS++LL++
Sbjct: 61 RTLKALMHSLSMTGIAIFFSASIALMLAIIANLNRR-WNMLIDFIVDCALSLPSLLLLMI 119
Query: 158 VAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEI 217
+ + S V I L++WP + R +++ SL ++++ + G + +I +
Sbjct: 120 LTVSFGSGSQGVM-FAIALSHWPKLTRLCKSEIQSLMCSDYMSHALNFGHKKIHVILQHA 178
Query: 218 MPNMISYIFMAGILQVSGAILASATLDFIGLG-PTTVVSLGVILQKAIMHNALQFGWWWW 276
P+++ +L + +L SA L F+G G T S+G I +A ++ L G WW
Sbjct: 179 FPHLLPQWMTGMLLLLPHGLLHSAALSFLGFGSDPTRASMGKIFDEA--NSYLLTGQWWL 236
Query: 277 FIPPGLIITLIITAL 291
+ PGL++ I L
Sbjct: 237 AVLPGLMLVFTIILL 251
>sp|P36669|SAPC_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPC
>gi|628819|pir||S39587 peptide transport system permease
sapC - Salmonella typhimurium >gi|414210|emb|CAA52286.1|
(X74212) sapC [Salmonella typhimurium]
Length = 296
Score = 75.7 bits (183), Expect = 7e-13
Identities = 62/218 (28%), Positives = 107/218 (48%), Gaps = 10/218 (4%)
Query: 81 EVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLM 140
EV LGTD G+D+ + L+ G ++ A + + T G+ +G+V+G G+ +L
Sbjct: 73 EVSFFLGTDDLGRDVLSRLLSGAAPTVGGAFIVTLAATLCGLVLGVVAGATHGLRSAVLN 132
Query: 141 MFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVN 200
++ +L IPS++L I+V AF + L P + RSV + +E+V
Sbjct: 133 HILDTLLSIPSLLLAIIVVAFAGPHLSHAM-FAVWLALLPRMVRSVYSMVHDELEKEYVI 191
Query: 201 LSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVIL 260
+++ G + L I++ I+PN+ + + +S AIL A L F+ LG L
Sbjct: 192 AARLDGATTLNILWFAILPNITAGLVTEITRALSMAILDIAALGFLDLG----AQLPSPE 247
Query: 261 QKAIMHNALQFGWW--WWFIPPGLIITLIITALFFVNL 296
A++ +AL+ + W + PG ITL ++ VNL
Sbjct: 248 WGAMLGDALELIYVAPWTVMLPGAAITL---SVLLVNL 282
>pir||A70193 oligopeptide ABC transporter, permease protein (oppC-2) homolog -
Lyme disease spirochete >gi|2688677|gb|AAC67088.1|
(AE001174) oligopeptide ABC transporter, permease
protein (oppC-2) [Borrelia burgdorferi]
Length = 286
Score = 75.7 bits (183), Expect = 7e-13
Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 31/292 (10%)
Query: 18 KFGIGLISFFVLFAIIGP-LFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYT 76
K I L + F++ II P L + +Y + K+ L + + +PP T++N
Sbjct: 9 KIYIVLFNIFIVLLIITPSLVNENSKIAIYKKDPNKVYLKSIKNVPMPP-TKDNP----- 62
Query: 77 GKTIEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVD 136
LG DK G+D+ A L+ R S+ +++ A I +GI IG + G +
Sbjct: 63 ---------LGIDKMGRDIMARLIIATRNSILLSLSYATISAIIGIFIGTIIGMFSFEIC 113
Query: 137 ELLMMFVNIMLVIPSIVLLILV-------AAFLEARSPEVQALIIGLTNWPWVARSVRAQ 189
L+ + + +P ++ LV + ++ + ALI G + ++AR+
Sbjct: 114 MLISKPIETLQTLPFFYVVSLVFYYFLKQKTYNMLQTATLLALIHGWIRFAFIARN---N 170
Query: 190 TLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG 249
TL +KN +++ S+ +G S +RII I P + S I LQ+ ++ + F+
Sbjct: 171 TLIIKNLDYIKASEAMGASKIRIILYHIFPEVFSSISSIIPLQMGRSLTTFEVVSFLQKQ 230
Query: 250 PTTVV-SLGVILQKAIMHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEE 300
+ SLG +L M N + W +I P LI+ I L +N + +
Sbjct: 231 DKNLYPSLGELLNYMQMGNK----YLWIWINPLLILIGINIILAIINFKLRK 278
>sp|Q47624|SAPC_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPC
>gi|7442408|pir||G64877 peptide transport system
permease protein sapC - Escherichia coli
>gi|1279402|emb|CAA65939.1| (X97282) SapC protein
[Escherichia coli] >gi|1742105|dbj|BAA14845.1| (D90766)
Peptide transport system permease protein SapC.
[Escherichia coli] >gi|1742114|dbj|BAA14853.1| (D90767)
Peptide transport system permease protein SapC.
[Escherichia coli] >gi|1742123|dbj|BAA14862.1| (D90768)
Peptide transport system permease protein SapC.
[Escherichia coli] >gi|1787549|gb|AAC74374.1| (AE000227)
homolog of Salmonella peptide transport permease protein
[Escherichia coli K12]
Length = 296
Score = 73.0 bits (176), Expect = 4e-12
Identities = 49/169 (28%), Positives = 85/169 (49%), Gaps = 1/169 (0%)
Query: 81 EVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLM 140
EV LGTD G+D+ + L+ G ++ A + + T G+ +G +G G+ +L
Sbjct: 73 EVSFFLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATICGLVLGTFAGATHGLRSAVLN 132
Query: 141 MFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVN 200
++ +L IPS++L I+V AF S + L P + RS+ + +E+V
Sbjct: 133 HILDTLLAIPSLLLAIIVVAF-AGPSLSHAMFAVWLALLPRMVRSIYSMVHDELEKEYVI 191
Query: 201 LSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG 249
+++ G S L I++ +MPN+ + + +S AIL A L F+ LG
Sbjct: 192 AARLDGASTLNILWFAVMPNITAGLVTEITRALSMAILDIAALGFLDLG 240
>gb|AAF28111.1|AF153317_3 (AF153317) SapC [Shigella dysenteriae]
Length = 296
Score = 73.0 bits (176), Expect = 4e-12
Identities = 49/169 (28%), Positives = 85/169 (49%), Gaps = 1/169 (0%)
Query: 81 EVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLM 140
EV LGTD G+D+ + L+ G ++ A + + T G+ +G +G G+ +L
Sbjct: 73 EVSFFLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATICGLVLGTFAGATHGLRSAVLN 132
Query: 141 MFVNIMLVIPSIVLLILVAAFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVN 200
++ +L IPS++L I+V AF S + L P + RS+ + +E+V
Sbjct: 133 HILDTLLAIPSLLLAIIVVAF-AGPSLSHAMFAVWLALLPRMVRSIYSMVHDELEKEYVI 191
Query: 201 LSKIVGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLG 249
+++ G S L I++ +MPN+ + + +S AIL A L F+ LG
Sbjct: 192 AARLDGASTLNILWFAVMPNITAGLVTEITRALSMAILDIAALGFLDLG 240
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.145 0.431
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104796987
Number of Sequences: 2977
Number of extensions: 4169503
Number of successful extensions: 18730
Number of sequences better than 1.0e-10: 133
Number of HSP's better than 0.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 18389
Number of HSP's gapped (non-prelim): 148
length of query: 309
length of database: 189,106,746
effective HSP length: 52
effective length of query: 257
effective length of database: 157,985,422
effective search space: 40602253454
effective search space used: 40602253454
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 165 (68.7 bits)