BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1347 (dppF-3) DE:dipeptide ABC transporter, ATP-binding
protein (dppF)
(319 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf... 651 0.0
pir||F71163 probable oligopeptide transport ATP-binding protein ... 531 e-150
pir||D75142 oligopeptide transport ATP-binding protein appf PAB0... 519 e-146
pir||A72282 oligopeptide ABC transporter, ATP-binding protein - ... 363 2e-99
pir||F71130 probable oligopeptide transport ATP-binding protein ... 280 1e-74
pir||C72421 oligopeptide ABC transporter, ATP-binding protein - ... 275 6e-73
pir||E72428 oligopeptide ABC transporter, ATP-binding protein - ... 268 8e-71
pir||A72284 oligopeptide ABC transporter, ATP-binding protein - ... 264 1e-69
pir||E72393 oligopeptide ABC transporter, ATP-binding protein - ... 259 2e-68
pir||C72289 oligopeptide ABC transporter, ATP-binding protein - ... 258 5e-68
pir||F71211 probable oligopeptide transport ATP-binding protein ... 253 2e-66
pir||F75026 oligopeptide transport ATP-binding protein appf. PAB... 252 5e-66
pir||A72216 oligopeptide ABC transporter, ATP-binding protein - ... 249 3e-65
pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf... 247 2e-64
sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 245 4e-64
pir||G71014 probable dipeptide transport ATP-binding protein dpp... 245 7e-64
dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 239 3e-62
gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF... 235 4e-61
gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dp... 234 1e-60
pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 ... 232 4e-60
gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (d... 231 9e-60
dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 229 3e-59
pir||A72618 probable oligopeptide transport ATP-binding protein ... 229 4e-59
pir||G75380 peptide ABC transporter, ATP-binding protein - Deino... 229 4e-59
pir||F75202 dipeptide abc transporter, dipeptide-binding protein... 228 1e-58
gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD... 225 5e-58
pir||B72424 oligopeptide ABC transporter, ATP-binding protein - ... 225 5e-58
emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related ... 223 2e-57
pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AA... 222 6e-57
pir||C72536 probable oligopeptide transport ATP-binding protein ... 220 2e-56
pir||E71130 probable oligopeptide transport ATP-binding protein ... 217 2e-55
gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola] 217 2e-55
sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 215 5e-55
sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 215 5e-55
emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding pr... 215 7e-55
gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus ... 214 9e-55
gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sul... 214 1e-54
pir||D72371 oligopeptide ABC transporter, ATP-binding protein - ... 213 2e-54
pir||G75026 oligopeptide transport ATP-binding protein appd. PAB... 213 2e-54
sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 212 6e-54
gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (d... 211 8e-54
emb|CAC05751.1| (AL391751) putative peptide transport system ATP... 211 8e-54
gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus ... 211 1e-53
pir||G71211 probable oligopeptide transport ATP-binding protein ... 211 1e-53
pir||D72289 oligopeptide ABC transporter, ATP-binding protein - ... 210 1e-53
pir||T34760 oligopeptide ABC transporter ATP-binding protein - S... 210 2e-53
emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD)... 209 3e-53
sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 209 3e-53
pir||H72215 oligopeptide ABC transporter, ATP-binding protein - ... 208 5e-53
pir||A72371 oligopeptide ABC transporter, ATP-binding protein - ... 208 7e-53
dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 208 9e-53
pir||F70141 probable oligopeptide transport ATP-binding protein ... 207 2e-52
pir||C72452 probable peptide transport ATP-binding protein APE22... 207 2e-52
pir||A72452 probable peptide transport ATP-binding protein APE22... 206 3e-52
pir||B72300 oligopeptide ABC transporter, ATP-binding protein - ... 206 4e-52
pir||C75142 oligopeptide transport ATP-binding protein appf PAB0... 206 4e-52
pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd... 206 4e-52
gi|10955083 agaD [Agrobacterium tumefaciens] >gi|11346288|pir||T... 204 1e-51
pir||D71163 probable oligopeptide transport ATP-binding protein ... 204 1e-51
gb|AAG22038.1|AF305387_5 (AF305387) OppF [Bacillus thuringiensis] 204 1e-51
gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dp... 203 2e-51
sp|P24137|OPPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 203 3e-51
gb|AAA62693.1| (M57689) sporulation protein [Bacillus subtilis] ... 203 3e-51
emb|CAA39791.1| (X56347) OppF [Bacillus subtilis] 201 7e-51
pir||G75202 dipeptide abc transporter, dipeptide-binding protein... 200 2e-50
emb|CAC12447.1| (AL445067) probable dipeptide transport system, ... 200 2e-50
sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 199 3e-50
pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC... 199 3e-50
dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 199 3e-50
dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [O... 199 4e-50
gb|AAG20461.1| (AE005118) oligopeptide ABC transporter ATP-bindi... 199 5e-50
gb|AAG20587.1| (AE005129) dipeptide ABC transporter ATP-binding;... 198 6e-50
gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . ... 197 2e-49
pir||F83082 probable ATP-binding component of ABC dipeptide tran... 197 2e-49
gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-bindi... 196 2e-49
dbj|BAB07358.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 196 3e-49
dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 196 4e-49
emb|CAA61526.1| (X89237) oligopeptidepermease [Streptococcus pyo... 195 7e-49
gb|AAG32327.1| (AF305548) oligopeptide permease [Streptococcus p... 194 9e-49
pir||E72536 probable oligopeptide transport ATP-binding protein ... 194 1e-48
pir||B69856 oligopeptide transport ATP-binding protein homolog y... 193 2e-48
sp|P18766|AMIF_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 192 5e-48
gb|AAA23706.1| (L08399) peripheral membrane protein [Escherichia... 192 5e-48
sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 192 5e-48
sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 191 1e-47
pir||F64557 dipeptide transport ATP-binding protein dppF - Helic... 189 3e-47
pir||A71952 dipeptide transport system ATP-binding protein - Hel... 189 3e-47
sp|Q07734|OPPF_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 189 4e-47
pir||T35983 probable peptide transport ATP-binding protein - Str... 189 5e-47
pir||B72421 oligopeptide ABC transporter, ATP-binding protein - ... 189 5e-47
pir||H70788 probable peptidetransport system ABC-transporter ATP... 188 7e-47
pir||C72424 oligopeptide ABC transporter, ATP-binding protein - ... 188 7e-47
pir||F72049 peptide ABC transporter, ATP-binding protein CP0065 ... 188 9e-47
pir||E64820 probable oligopeptide transport protein - Escherichi... 187 1e-46
dbj|BAA35517.1| (D90720) Hypothetical ABC transporter ATP-bindin... 187 1e-46
sp|P75796|YLIA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 187 1e-46
pir||C72300 oligopeptide ABC transporter, ATP-binding protein - ... 187 2e-46
pir||F71014 probable dipeptide transport ATP-binding protein dpp... 186 3e-46
pir||B82393 ABC transporter, ATP-binding protein VCA0977 [import... 186 3e-46
dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 185 4e-46
pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 ... 185 6e-46
pir||C72371 oligopeptide ABC transporter, ATP-binding protein - ... 185 6e-46
pir||T45281 probable ABC transporter intracellular ATPase chain ... 184 1e-45
gb|AAF73094.1|AF103793_5 (AF103793) ATPase OppF [Listeria monocy... 184 1e-45
sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 183 2e-45
pir||H75117 peptide abc transporter ATP-binding protein PAB1874 ... 183 2e-45
pir||T03432 probable transport protein accC - Agrobacterium tume... 182 4e-45
gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola] 182 7e-45
gb|AAK43145.1| ABC transporter, ATP binding protein [Sulfolobus ... 181 9e-45
sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 181 9e-45
gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis] 180 1e-44
pir||D38447 sporulation initiation protein spo0KD - Bacillus sub... 180 1e-44
sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 180 1e-44
pir||F71483 probable dipeptide transport - Chlamydia trachomatis... 180 2e-44
pir||D72393 oligopeptide ABC transporter, ATP-binding protein - ... 180 2e-44
emb|CAC16447.1| (AL450165) putative oligopeptide ABC transporter... 180 2e-44
sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 180 3e-44
pir||F72617 probable dipeptide transport system ATP-binding prot... 180 3e-44
gi|10954942 Probable accC [Agrobacterium tumefaciens] >gi|649829... 179 4e-44
gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis] 179 4e-44
pir||C81746 peptide ABC transporter, ATP-binding protein TC0062 ... 178 6e-44
dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 178 6e-44
dbj|BAA03322.1| (D14438) ATP-binding protein [Synechococcus elon... 177 2e-43
pir||S75333 oligopeptide transport protein oppF - Synechocystis ... 177 2e-43
pir||T34759 oligopeptide ABC transporter ATP-binding protein - S... 177 2e-43
gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocy... 176 3e-43
dbj|BAA14778.1| (D90763) Oligopeptide transport ATP-binding prot... 176 4e-43
sp|P76027|OPPD_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 176 4e-43
gb|AAD48154.1|AF086618_1 (AF086618) ABC transporter homolog [Loo... 175 5e-43
pir||D72720 probable oligopeptide transport ATP-binding protein ... 175 7e-43
gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [H... 175 7e-43
pir||E64557 dipeptide transport ATP-binding protein dppD - Helic... 175 9e-43
pir||B72282 oligopeptide ABC transporter, ATP-binding protein - ... 174 1e-42
pir||E70141 oligopeptide transport ATP-binding protein oppD - Ly... 174 1e-42
pir||H71951 dipeptide transport system dipeptide transport syste... 173 3e-42
pir||H75380 peptide ABC transporter, ATP-binding protein - Deino... 173 3e-42
gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana] 172 6e-42
pir||G72283 oligopeptide ABC transporter, ATP-binding protein - ... 171 7e-42
sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 171 1e-41
gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus ... 171 1e-41
emb|CAC05750.1| (AL391751) putative peptide transport system ATP... 170 2e-41
pir||F72428 oligopeptide ABC transporter, ATP-binding protein - ... 170 2e-41
sp|P04285|OPPD_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 169 4e-41
pir||QREBOT oligopeptide transport protein oppD - Salmonella typ... 168 6e-41
pir||JC5009 nucleotide-binding protein D - Methanosarcina mazei ... 166 2e-40
pir||H72366 oligopeptide ABC transporter, ATP-binding protein - ... 166 3e-40
gb|AAK41518.1| Oligo/dipeptide transport, ATP binding protein . ... 157 2e-37
sp|P45288|SAPD_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 153 2e-36
dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [O... 153 2e-36
emb|CAA10912.1| (AJ222649) sapD [Erwinia chrysanthemi] 152 4e-36
dbj|BAB05518.1| (AP001513) oligopeptide ABC transporter (ATP-bin... 152 4e-36
pir||T45280 probable ABC transporter intracellular ATPase chain ... 152 5e-36
pir||E82170 peptide ABC transporter, ATP-binding protein VC1683 ... 150 2e-35
emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport s... 149 4e-35
gb|AAF28110.1|AF153317_2 (AF153317) SapD [Shigella dysenteriae] 149 5e-35
sp|P36635|SAPD_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 148 6e-35
dbj|BAA97046.1| (AB015765) TrkE [Vibrio alginolyticus] 148 6e-35
sp|P36636|SAPD_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 148 8e-35
pir||T03431 probable transport protein accB - Agrobacterium tume... 139 5e-32
sp|P47325|OPPD_MYCGE OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 138 7e-32
gi|10954941 Probable accB [Agrobacterium tumefaciens] >gi|649829... 137 2e-31
pir||H64716 ABC transporter, ATP-binding protein - Helicobacter ... 136 3e-31
pir||F71800 ABC transporter, ATP-binding protein - Helicobacter ... 136 3e-31
emb|CAB65650.1| (AJ252160) putative ABC-transporter ATP-binding ... 134 1e-30
sp|P75552|OPPD_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 134 1e-30
gb|AAC45666.1| (AF010307) AbcC [Helicobacter pylori] 134 2e-30
pir||H83609 sulfate transport protein CysA PA0280 [imported] - P... 128 1e-28
emb|CAA68077.1| (X99740) oligopeptide transport ATP-binding prot... 127 1e-28
pir||F81875 sulfate ABC transporter, ATP-binding protein NMA1097... 126 4e-28
gi|10955070 agtA [Agrobacterium tumefaciens] >gi|6689864|gb|AAF2... 124 2e-27
pir||B81147 sulfate ABC transporter, ATP-binding protein NMB0879... 124 2e-27
gb|AAC24216.1| (AF055482) ABC transporter [Thermotoga neapolitana] 120 2e-26
gi|7524830 sulfate transport system permease protein [Chlorella ... 120 3e-26
dbj|BAB06849.1| (AP001517) sulfate ABC transporter (ATP-binding ... 120 3e-26
gi|11466425 probable transport protein [Mesostigma viride] >gi|7... 118 1e-25
sp|P38045|NRTC_SYNP7 NITRATE TRANSPORT ATP-BINDING PROTEIN NRTC ... 117 1e-25
dbj|BAB06418.1| (AP001516) ABC transporter (ATP-binding protein)... 115 6e-25
pir||H82694 sulfate ABC transporter ATP-binding protein XF1347 [... 115 1e-24
dbj|BAB04472.1| (AP001509) ABC transporter (ATP-binding protein)... 114 1e-24
emb|CAC11826.1| (AL445065) probable sugar ABC transporter, ATP-b... 114 1e-24
pir||A72401 ABC transporter, ATP-binding protein - Thermotoga ma... 114 2e-24
gi|11467821 probable transport protein [Nephroselmis olivacea] >... 113 2e-24
pir||C82310 sulfate ABC transporter, ATP-binding protein VC0541 ... 113 4e-24
sp|P16676|CYSA_ECOLI SULFATE TRANSPORT ATP-BINDING PROTEIN CYSA ... 112 7e-24
dbj|BAB03992.1| (AP001507) ABC transporter (ATP-binding protein)... 111 9e-24
sp|P57383|LOLD_BUCAI LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PR... 111 1e-23
dbj|BAA05388.1| (D26358) CmpC [Synechococcus sp.] 110 2e-23
pir||G83607 polyamine transport protein PotG PA0302 [imported] -... 110 2e-23
pir||S75959 nitrate transport protein C-1 - Synechocystis sp. (s... 110 3e-23
gb|AAA23639.1| (M32101) cysA [Escherichia coli] 109 6e-23
sp|Q44613|LOLD_BUCAP LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PR... 108 7e-23
sp|P75957|YCFV_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 108 7e-23
dbj|BAA35937.1| (D90747) Heterocyst maturation protein (devA) ho... 108 7e-23
pir||C64666 glutamine transport protein glnQ - Helicobacter pylo... 103 2e-21
dbj|BAB04188.1| (AP001508) phosphonates transport system [Bacill... 103 2e-21
gb|AAK40988.1| ABC transporter, ATP binding protein. [Sulfolobus... 102 4e-21
emb|CAB57615.1| (Y18930) ABC transporter/ATP-binding protein [Su... 102 4e-21
pir||A64703 ABC transporter, ATP-binding protein - Helicobacter ... 102 6e-21
pir||H71817 probable amino acid ABC transporter, ATP-binding pro... 102 6e-21
pir||D81435 probable iron-uptake ABC transport system ATP-bindin... 102 7e-21
gb|AAD53162.1|AF176824_5 (AF176824) ATP-binding protein of ABC t... 101 1e-20
gb|AAK41273.1| Sugar ABC transporter [Sulfolobus solfataricus] 100 2e-20
pir||B82185 glycerol-3-phosphate ABC transporter, ATP-binding pr... 100 3e-20
pir||A70001 ABC transporter (ATP-binding protein) homolog ytsC -... 98 1e-19
pir||D81303 branched-chain amino-acid ABC transport system ATP-b... 96 5e-19
sp|P45092|ARTP_HAEIN ARGININE TRANSPORT ATP-BINDING PROTEIN ARTP... 95 9e-19
gb|AAG34709.1|AF320001_2 (AF320001) putative ATP binding protein... 95 9e-19
pir||D71179 probable sugar ABC transporter - Pyrococcus horikosh... 92 6e-18
pir||B70127 phosphate ABC transporter, ATP-binding protein (pstB... 91 1e-17
dbj|BAB04009.1| (AP001508) ABC transporter (ATP-binding protein)... 90 3e-17
pir||A70158 ABC transporter, ATP-binding protein homolog - Lyme ... 89 5e-17
pir||F72405 ABC transporter, ATP-binding protein - Thermotoga ma... 89 5e-17
sp|Q57243|YC72_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 88 1e-16
sp|P73265|NRTD_SYNY3 PUTATIVE NITRATE TRANSPORT ATP-BINDING PROT... 88 1e-16
pir||D72485 probable high-affinity branched-chain amino acid tra... 88 1e-16
emb|CAB94640.1| (AL359215) putative iron transport protein, ATP-... 88 1e-16
pir||E81261 probable ABC transport system ATP-binding protein Cj... 87 3e-16
pir||D72101 ABC transporter ATPase - Chlamydophila pneumoniae (s... 86 5e-16
dbj|BAB04167.1| (AP001508) ABC transporter (ATP-binding protein)... 86 5e-16
pir||T44443 gliding motility protein [imported] - Flavobacterium... 86 6e-16
pir||D71550 probable ABC transporter ATPase - Chlamydia trachoma... 82 9e-15
gb|AAF73553.1| (AE002310) ABC transporter, ATP-binding protein [... 81 2e-14
gb|AAK41504.1| ABC transporter, ATP binding protein [Sulfolobus ... 80 3e-14
pir||D70984 probable drrA protein - Mycobacterium tuberculosis (... 80 3e-14
pir||S49597 ATP-binding protein - Lactococcus lactis >gi|575301|... 80 4e-14
gb|AAC43327.1| (U17255) NisF [Lactococcus lactis] >gi|1095449|pr... 80 4e-14
gb|AAF43495.1|AF130119_2 (AF130119) oligopeptide permease F [Myc... 79 6e-14
dbj|BAB11402.1| (AP002543) ABC transporter-like protein [Arabido... 78 1e-13
gb|AAK41516.1| Oligo/dipeptide transport, ATP binding protein . ... 76 5e-13
pir||B72552 probable ATP-dependent transporter APE1702 - Aeropyr... 76 5e-13
pir||G71131 probable ATP-binding protein - Pyrococcus horikoshii... 76 7e-13
pir||F81431 ABC transporter ATP-binding protein Cj0142c [importe... 76 7e-13
gb|AAD32038.1|AF093787_6 (AF093787) ABC transporter homolog CylA... 75 2e-12
gb|AAC62423.1| (AF084104) NatA [Bacillus firmus] 71 1e-11
sp|O05732|Y888_HELPY PROBABLE IRON CHELATIN TRANSPORT ATP-BINDIN... 70 3e-11
sp|Q9ZKW3|Y888_HELPJ PROBABLE IRON CHELATIN TRANSPORT ATP-BINDIN... 70 3e-11
pir||C72336 ABC transporter, ATP-binding protein - Thermotoga ma... 70 3e-11
>pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf) PAB1347 -
Pyrococcus abyssi (strain Orsay)
>gi|5458955|emb|CAB50442.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 319
Score = 651 bits (1662), Expect = 0.0
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK
Sbjct: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN
Sbjct: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS
Sbjct: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF
Sbjct: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
Query: 241 DNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRP 300
DNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRP
Sbjct: 241 DNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRP 300
Query: 301 EPVEVEKNHWVACHLYGGS 319
EPVEVEKNHWVACHLYGGS
Sbjct: 301 EPVEVEKNHWVACHLYGGS 319
>pir||F71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256912|dbj|BAA29595.1|
(AP000002) 321aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 321
Score = 531 bits (1352), Expect = e-150
Identities = 248/316 (78%), Positives = 293/316 (92%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++LE++++TK+FTSGL GGY+VRAVD+V+F + EGEIVSL+GESGSGKTTIGKLILRL+K
Sbjct: 3 LVLELEHVTKVFTSGLFGGYEVRAVDDVSFEVGEGEIVSLIGESGSGKTTIGKLILRLLK 62
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PTSG+ILF+GEDIWSFD++KL YYYKNVQAVFQDPFASFNPL+KVDRVFDLVFR FL+
Sbjct: 63 PTSGRILFRGEDIWSFDREKLRRYYYKNVQAVFQDPFASFNPLHKVDRVFDLVFRNFLRG 122
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
V+ E++EL++R+LESVGLNP E+LGK+PHQLSGGQLQRILIARALLVEPSLLIADEAVS
Sbjct: 123 VAPGEREELIKRSLESVGLNPGEVLGKYPHQLSGGQLQRILIARALLVEPSLLIADEAVS 182
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
MLDASTRID+LNLLGEFRD GTSVIFITHDLALGYYISDKI+IMYRG IVEWGD E+VF
Sbjct: 183 MLDASTRIDILNLLGEFRDKFGTSVIFITHDLALGYYISDKIVIMYRGRIVEWGDAERVF 242
Query: 241 DNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRP 300
NPLHPYT+MLLESVPDL+V+WEFKGIEPEREE +V+E+KGC+FAPRC A+ +C++ P
Sbjct: 243 GNPLHPYTRMLLESVPDLSVRWEFKGIEPEREEERVYEIKGCRFAPRCPYARKECYEKPP 302
Query: 301 EPVEVEKNHWVACHLY 316
+ +E+EKNH VAC+LY
Sbjct: 303 QTIEIEKNHHVACYLY 318
>pir||D75142 oligopeptide transport ATP-binding protein appf PAB0631 -
Pyrococcus abyssi (strain Orsay)
>gi|5458364|emb|CAB49853.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 519 bits (1323), Expect = e-146
Identities = 248/319 (77%), Positives = 285/319 (88%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
MLLEVQNLTKIFTSGLIGGYQVRAVD V+F+I EGEIVSLVGESGSGKTTIGKLILRL+
Sbjct: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PTSG+ILF+G+DI F K +L YYY+ VQAVFQDPFASFNPL++VD+VF ++F ++ +
Sbjct: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
+ E++E++ +ALE VGLNP E+ GK+PHQLSGGQLQRILIARALL++P LLIADEAVS
Sbjct: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
MLDASTRIDVLNLLGEFRD +GTSV+FITHDLALGYYISD IIMYRG+IVE G+TEKVF
Sbjct: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
Query: 241 DNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRP 300
NPLHPYTKMLLESVPDLNVKWEFKGIEPE+EEGKVW++KGC++APRC AKD C+KIRP
Sbjct: 241 HNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRP 300
Query: 301 EPVEVEKNHWVACHLYGGS 319
+EVEKNHWVACHLY S
Sbjct: 301 TLIEVEKNHWVACHLYQSS 319
>pir||A72282 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981772|gb|AAD36294.1|AE001778_15 (AE001778)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 315
Score = 363 bits (922), Expect = 2e-99
Identities = 185/313 (59%), Positives = 231/313 (73%), Gaps = 6/313 (1%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LL+VQNLTK F G G +++AVD+V+F I+ IVSL+GESGSGKTT+GKLIL+LI+P
Sbjct: 3 LLKVQNLTKEFPLGFFGKERLKAVDDVSFEIERSRIVSLIGESGSGKTTVGKLILKLIRP 62
Query: 62 TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNV 121
+SG+IL G DI K + + YY+ VQ VFQDPF+SFNP+YK+DRV D+VF F +
Sbjct: 63 SSGQILLNGRDITQI-KGRELREYYRKVQGVFQDPFSSFNPIYKIDRVLDMVFEEFFPDT 121
Query: 122 SDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSM 181
E+ + + SVG+NPREILGK+PHQLSGGQLQRILIAR LL+ LLIADE +SM
Sbjct: 122 PASERRTKMEEVIASVGMNPREILGKYPHQLSGGQLQRILIARTLLLNVELLIADEIISM 181
Query: 182 LDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFD 241
LDASTR+D+LNLLG+ R+ G SVIFITHDL+LGYYISD+ IMYRG+IVE GDTEKVF
Sbjct: 182 LDASTRVDILNLLGDLRE-RGMSVIFITHDLSLGYYISDETFIMYRGNIVEMGDTEKVFH 240
Query: 242 NPLHPYTKMLLESVPDLNVKWEF-KGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRP 300
NP+HPYTKMLLESVP+++ KW+ K PE CK+ RC + ++C +P
Sbjct: 241 NPIHPYTKMLLESVPEIDRKWDLSKRFIPELVSS---SNAPCKYYDRCPIRDERCLVQKP 297
Query: 301 EPVEVEKNHWVAC 313
VEVE+NH V C
Sbjct: 298 AMVEVEENHKVLC 310
>pir||F71130 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3257221|dbj|BAA29904.1|
(AP000003) 323aa long hypothetical oligopeptide
transport ATP-binding protein APPF [Pyrococcus
horikoshii]
Length = 323
Score = 280 bits (710), Expect = 1e-74
Identities = 154/322 (47%), Positives = 216/322 (66%), Gaps = 11/322 (3%)
Query: 2 LLEVQNLTKIF--TSGLIGG-YQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRL 58
L+EV+NLTK+F TS ++G +RAVDNV+F IK+ EI+ LVGESG GK+T+GKL++RL
Sbjct: 6 LIEVKNLTKLFPVTSSILGKKISIRAVDNVSFEIKKNEILGLVGESGCGKSTLGKLLVRL 65
Query: 59 IKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL 118
++PTSG +LFKG+DI+ + K + Y K+VQ VFQ+P+ SF+P + F+ +
Sbjct: 66 LEPTSGTVLFKGQDIYKL-RGKKLKEYRKSVQMVFQNPYTSFDPRLTL---FENIAEPLY 121
Query: 119 KNVSDVEKDELVRRAL---ESVGLNPRE-ILGKFPHQLSGGQLQRILIARALLVEPSLLI 174
+ + K+E + A+ E VGL P E L ++PH+LSGGQLQR IARA+ +EP ++
Sbjct: 122 THKLALNKEEALTLAMQYFEDVGLTPPEDFLMRYPHELSGGQLQRASIARAIALEPEFIV 181
Query: 175 ADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWG 234
ADE SMLDAS R +LNL+ + R TS +FITHDL YYI+D+I +MY G IVE G
Sbjct: 182 ADEPTSMLDASLRSGILNLIKKLRKELHTSWLFITHDLPSAYYIADRIAVMYLGKIVEIG 241
Query: 235 DTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDK 294
++++V NPLHPYT+ LLE+ ++ K + + E V+E C+F PRC A +K
Sbjct: 242 ESKEVLKNPLHPYTQALLEANLPIDPDASLKEPKVKGEPKPVFETGYCRFFPRCPYAFEK 301
Query: 295 CWKIRPEPVEVEKNHWVACHLY 316
C K P VEV+K+H+VAC LY
Sbjct: 302 CKKEEPPLVEVKKDHYVACWLY 323
>pir||C72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980563|gb|AAD35169.1|AE001694_5 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 320
Score = 275 bits (695), Expect = 6e-73
Identities = 157/322 (48%), Positives = 210/322 (64%), Gaps = 12/322 (3%)
Query: 2 LLEVQNLTKIFTSGLI-GGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
LLE++NLTKIFT G I ++ AVDNV F I E EI +L GESG GKTT K+IL +
Sbjct: 3 LLEIKNLTKIFTIGSIFSRTRIVAVDNVNFDINEAEIFTLAGESGCGKTTTAKIILGFEE 62
Query: 61 PTSGKILFKGEDIWSFDK-DKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT-FL 118
PTSG+I++KG I + +K K +QAVFQ+PF++FNPL KVDR F + T F
Sbjct: 63 PTSGEIIYKGRKIDRVHQNEKERRELLKEIQAVFQNPFSTFNPLRKVDRYF---YETLFN 119
Query: 119 KNVSDVEK--DELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
++D +K +E+++ L +VG++ E K+P + SGGQLQRI IARALL PSLL+AD
Sbjct: 120 LGIADTKKKAEEIIKEKLSAVGISFEEFSEKYPSEFSGGQLQRISIARALLTNPSLLVAD 179
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
E VSM+DAS R+ ++NL + ++ +G SV++ITHDL YY+SD+I +M+RG+IVE G
Sbjct: 180 EPVSMVDASLRMSIVNLFKDLKEQYGVSVLYITHDLTTAYYVSDRIAVMFRGNIVELGPA 239
Query: 237 EKVFDNPLHPYTKMLLESV--PDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDK 294
EKV P HPYT++L ESV PD KW+ + I+ E + +GCKFA RC A D
Sbjct: 240 EKVLMEPKHPYTQLLRESVPEPDPKKKWDIR-IKLSETEQAEYLRQGCKFAGRCPKAMDI 298
Query: 295 CWKIRPEPVEVEKNHWVACHLY 316
C K P EV+ V C LY
Sbjct: 299 CRKEPPPYFEVD-GVQVKCWLY 319
>pir||E72428 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980511|gb|AAD35121.1|AE001690_15 (AE001690)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 268
Score = 268 bits (677), Expect = 8e-71
Identities = 138/264 (52%), Positives = 186/264 (70%), Gaps = 4/264 (1%)
Query: 3 LEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPT 62
L V+NLTKIF+ G ++ AV NV+F +KE EIVSLVGESGSGKTT K+ILRL+ PT
Sbjct: 4 LVVKNLTKIFSLGFFSKRRIEAVKNVSFEVKEKEIVSLVGESGSGKTTTAKMILRLLPPT 63
Query: 63 SGKILFKGEDIWSFDKDK-LMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNV 121
SG+I F+G+DIW KD+ + + + V AVFQDPFAS+NP Y V+R + L+N
Sbjct: 64 SGEIYFEGKDIWKDIKDRESLVEFRRKVHAVFQDPFASYNPFYPVERTLWQAI-SLLENK 122
Query: 122 SDVEKD--ELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
+K+ EL++ +L VG++P+++LGK+PHQ+SGGQ QRI+IAR ++ P L++ADE
Sbjct: 123 PSNKKEALELIKESLFRVGIDPKDVLGKYPHQISGGQKQRIMIARCWILRPLLIVADEPT 182
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
SM+DAS+R ++ LL E R+ GTS+IFITHDL L YY+SD I +M G IVE G +KV
Sbjct: 183 SMIDASSRGGIIKLLEELREEQGTSIIFITHDLGLAYYVSDNIFVMKNGEIVERGHPDKV 242
Query: 240 FDNPLHPYTKMLLESVPDLNVKWE 263
P H YTK+L+ S+P L K E
Sbjct: 243 VLEPTHEYTKLLVGSIPKLYRKLE 266
>pir||A72284 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981747|gb|AAD36271.1|AE001776_7 (AE001776)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 319
Score = 264 bits (667), Expect = 1e-69
Identities = 152/318 (47%), Positives = 210/318 (65%), Gaps = 9/318 (2%)
Query: 3 LEVQNLTKIFTSG-LIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
L ++NLTK+++ G L+ ++ AVD+V+FS+K EI +L GESG GK+T K+IL +P
Sbjct: 5 LILKNLTKVYSIGSLLFRSKITAVDDVSFSLKRAEIFTLAGESGCGKSTTAKMILGFEEP 64
Query: 62 TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVF-DLVFRTFLKN 120
TSG I+F+G I + K K + + VQAVFQ+PF SFNPL VD +F + V L N
Sbjct: 65 TSGDIIFEGNSIQWWKKRK--KDFLRKVQAVFQNPFESFNPLLTVDDIFFETVMNYGLAN 122
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
S E ++L+ L+ VGL +I G++ +LSGGQLQR IAR+LL PSLLIADE VS
Sbjct: 123 -SRNEAEKLIDEKLQLVGLKFEDINGRYQSELSGGQLQRASIARSLLSNPSLLIADEPVS 181
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
M+DAS R+ ++NL + RD G SVI+ITHDLA YY+SD+I IM+RG+IVE G +KV
Sbjct: 182 MVDASLRMSIVNLFAKLRDQLGVSVIYITHDLATAYYVSDRIAIMFRGNIVETGPVDKVL 241
Query: 241 DNPLHPYTKMLLESVPDLN--VKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKI 298
+P HPYT++L ES+PD + KW + I E + + +GCKFA RC K+ C +
Sbjct: 242 IDPKHPYTQLLRESIPDPDPEKKWS-REITVSDTEYEEYLKEGCKFAGRCPYVKEICRRE 300
Query: 299 RPEPVEVEKNHWVACHLY 316
+P+ V V+ V CH+Y
Sbjct: 301 KPDDVLVD-GVLVKCHIY 317
>pir||E72393 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980804|gb|AAD35392.1|AE001712_5 (AE001712)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 316
Score = 259 bits (656), Expect = 2e-68
Identities = 147/322 (45%), Positives = 203/322 (62%), Gaps = 13/322 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQ-VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
M + V+NLTKIF G I + + A+DNV+F I GEI SL GESG GKTT K++L L
Sbjct: 1 MRVSVRNLTKIFRVGSIFSLKKLVAIDNVSFEIGSGEIFSLAGESGCGKTTTAKILLGLE 60
Query: 60 KPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLK 119
+PT+G++L+ G + F ++++ ++ K VQ V Q+PF++FNP KV+ D +F+T L+
Sbjct: 61 EPTNGEVLYDGIKLKDFVENEM--HFLKKVQTVQQNPFSTFNPFRKVE---DYLFKTVLR 115
Query: 120 NVSDVEKDE---LVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
KDE L+ L VGLN EI G++P + SGGQLQRI IARALL PS L+AD
Sbjct: 116 FKMANTKDEALRLIEEKLSVVGLNFDEIKGRYPSEFSGGQLQRISIARALLTNPSFLVAD 175
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
E VSM+DAS RI ++NL + ++ G S+++ITHDL+ YY++DK+ IM+RGSIVE G
Sbjct: 176 EPVSMIDASLRISIVNLFRDLKERFGISILYITHDLSTAYYVADKLAIMFRGSIVEMGRA 235
Query: 237 EKVFDNPLHPYTKMLLES--VPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDK 294
+ + D P HPYTK+L S VPD +W+ + I E + + KGCKFA RC
Sbjct: 236 QDILDTPFHPYTKLLKSSIPVPDPEYEWD-ENINLSSTEREEFFAKGCKFASRCPEVMSI 294
Query: 295 CWKIRPEPVEVEKNHWVACHLY 316
C + P +V V C LY
Sbjct: 295 CRESVPPDFDV-NGRVVKCWLY 315
>pir||C72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981699|gb|AAD36227.1|AE001772_6 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 325
Score = 258 bits (653), Expect = 5e-68
Identities = 147/325 (45%), Positives = 197/325 (60%), Gaps = 13/325 (4%)
Query: 2 LLEVQNLTKIFT--SGLIGGYQ------VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGK 53
L+EVQNL K F G I V+AVD V F I EG+ + LVGESGSGKTT G+
Sbjct: 3 LIEVQNLKKYFPVKQGPIDVLLRKPRKFVKAVDGVNFQIDEGKSLGLVGESGSGKTTTGR 62
Query: 54 LILRLIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLV 113
+ILRL +PT GKI+F G DI K++ M K +Q +FQDP AS NP +V + +
Sbjct: 63 VILRLEEPTDGKIIFDGRDITKLSKEE-MRKLRKEMQIIFQDPMASLNPYMRVGKAIEHA 121
Query: 114 FRTFLKNVSD-VEKDELVRRALESVGLNPRE-ILGKFPHQLSGGQLQRILIARALLVEPS 171
+ + D + E+V L V L P E I ++P +LSGGQ QR++IARAL+++P
Sbjct: 122 LE--IHGIGDRSSRKEMVLEMLRRVNLEPAEDIYRRYPRELSGGQRQRVVIARALILKPR 179
Query: 172 LLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIV 231
L++ADEAV+MLD S R +L LL E R +++FITHDLA Y+ D+I +MY G IV
Sbjct: 180 LVVADEAVAMLDVSVRSQLLRLLQELRKEFNLTMLFITHDLATTKYVCDEIAVMYLGKIV 239
Query: 232 EWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLA 291
E GD E ++ NP HPYT+ L+ +VP+ ++K + K I + GC+F PRC
Sbjct: 240 EIGDFEDIYLNPKHPYTQALISAVPEPSLKKKKKFIPEGETPNPIDVPSGCRFHPRCPYR 299
Query: 292 KDKCWKIRPEPVEVEKNHWVACHLY 316
D C K P+ VE+NH VACHLY
Sbjct: 300 MDICMKEEPQLKAVEENHKVACHLY 324
>pir||F71211 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3258402|dbj|BAA31085.1|
(AP000007) 335aa long hypothetical oligopeptide
transport ATP-binding protein appF [Pyrococcus
horikoshii]
Length = 335
Score = 253 bits (639), Expect = 2e-66
Identities = 140/333 (42%), Positives = 201/333 (60%), Gaps = 21/333 (6%)
Query: 2 LLEVQNLTKIFT------SGLIGGYQ--VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGK 53
+L+V+NL K F S L G Q V+AVD V+F I + ++ +LVGESG GKTT GK
Sbjct: 5 ILKVENLKKYFPVRRGFLSALRGEPQKFVKAVDGVSFEIYKQQVFALVGESGCGKTTTGK 64
Query: 54 LILRLIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLV 113
LI++L++PT GKI +G+D+ + + Y + VQ +FQDPF+S NP +++ V +
Sbjct: 65 LIVKLLEPTDGKIYLEGQDVTELRTKEEIKAYRRKVQMIFQDPFSSMNPRFRIYDVLEEP 124
Query: 114 FRTFLKNVSDVEKDELVRRALESVGLNP-REILGKFPHQLSGGQLQRILIARALLVEPSL 172
+ E++EL+ +ALE V + P E +G+FPH LSGGQ QR+ IARAL++ P+
Sbjct: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
++ADE VSMLD S R ++L L+ E ++ G + ++ITHDL+ Y +D I +MY G IVE
Sbjct: 185 VVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
Query: 233 WGDTEKVFDNPLHPYTKMLLESVP-------DLNVKWEFKGIEPEREEGKVWELKGCKFA 285
G +++ DNPLHPYT+ LL +VP D+ + KG P V GC+F
Sbjct: 245 MGPAKEIIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVP----SAVNIPSGCRFH 300
Query: 286 PRC-SLAKDKCWKIRPEPVEVEKNHWVACHLYG 317
PRC K C +P+ +E NHWV CH G
Sbjct: 301 PRCIYFKKGLCDVKQPQLIEYSHNHWVECHRVG 333
>pir||F75026 oligopeptide transport ATP-binding protein appf. PAB1197 -
Pyrococcus abyssi (strain Orsay)
>gi|5459166|emb|CAB50652.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF. [Pyrococcus abyssi]
Length = 335
Score = 252 bits (636), Expect = 5e-66
Identities = 138/333 (41%), Positives = 200/333 (59%), Gaps = 21/333 (6%)
Query: 2 LLEVQNLTKIFT------SGLIGGYQ--VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGK 53
+L+V+NL K F + L G Q VRAVD ++F + + ++ +LVGESG GKTT GK
Sbjct: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
Query: 54 LILRLIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLV 113
L+++L++PT GKI +G+D+ + + Y + VQ +FQDPF+S NP +++ V +
Sbjct: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
Query: 114 FRTFLKNVSDVEKDELVRRALESVGLNP-REILGKFPHQLSGGQLQRILIARALLVEPSL 172
+ E++EL+ +ALE V + P E +G+FPH LSGGQ QR+ IARAL++ P+
Sbjct: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
++ADE VSMLD S R ++L L+ E ++ G + ++ITHDL+ Y +D I +MY G IVE
Sbjct: 185 IVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
Query: 233 WGDTEKVFDNPLHPYTKMLLESVP-------DLNVKWEFKGIEPEREEGKVWELKGCKFA 285
G ++V DNPLHPYT+ LL +VP D+ + KG P V GC+F
Sbjct: 245 MGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVP----SAVNIPPGCRFH 300
Query: 286 PRC-SLAKDKCWKIRPEPVEVEKNHWVACHLYG 317
PRC K C P+ +E NHWV CH G
Sbjct: 301 PRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVG 333
>pir||A72216 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982328|gb|AAD36815.1|AE001813_7 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 249 bits (630), Expect = 3e-65
Identities = 138/320 (43%), Positives = 198/320 (61%), Gaps = 16/320 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LL+ +L K F G ++AVD ++ IKEGE + LVGESG GK+T+G+ IL+L++P
Sbjct: 13 LLQTVDLKKYFPQGK---RILKAVDGISIEIKEGETLGLVGESGCGKSTLGRTILKLLRP 69
Query: 62 TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFD---LVFRTFL 118
GKI F+G+DI + + DK M Y K +Q +FQDP S NP V R+ + ++ +
Sbjct: 70 DGGKIFFEGKDITNLN-DKEMKPYRKKMQIIFQDPLGSLNPQMTVGRIIEDPLIIHKIGT 128
Query: 119 KNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEA 178
K E+ + V L+ VG+ RE + FPH+ SGGQ QRI IARAL + P ++ DE
Sbjct: 129 KK----ERRKRVEELLDMVGIG-REFINSFPHEFSGGQQQRIGIARALALNPKFIVCDEP 183
Query: 179 VSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEK 238
VS LD S + +++LL E + G S +FI H+LA+ +IS K+ +MY G IVE+GD +K
Sbjct: 184 VSALDVSIQAQIIDLLEEIQQKMGISYLFIAHNLAVVEHISHKVAVMYLGKIVEYGDVDK 243
Query: 239 VFDNPLHPYTKMLLESVPDL---NVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKC 295
+F NP+HPYT+ LL+SVP + K F ++ E + KGC+F RC+ K C
Sbjct: 244 IFLNPIHPYTRALLKSVPKIPWDGQKQRFYSLKGEL-PSPIDLPKGCRFQTRCTEKKAIC 302
Query: 296 WKIRPEPVEVEKNHWVACHL 315
++ PE EVEKNH+V+CHL
Sbjct: 303 FEKEPELTEVEKNHFVSCHL 322
>pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf) PAB1875 -
Pyrococcus abyssi (strain Orsay)
>gi|5458167|emb|CAB49656.1| (AJ248285) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 326
Score = 247 bits (623), Expect = 2e-64
Identities = 142/323 (43%), Positives = 201/323 (61%), Gaps = 12/323 (3%)
Query: 2 LLEVQNLTKIFT-SGLIGGYQ-VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
+L+V+NL K F GL V+AVD V+F IK GE LVGESG GKTT G+ ILRLI
Sbjct: 5 VLKVENLKKYFPIRGLFRTIGWVKAVDGVSFEIKRGETFGLVGESGCGKTTTGRTILRLI 64
Query: 60 KPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLK 119
+PT GKI+F G+D+ ++L ++ + Q +FQDP++S +P V ++ +
Sbjct: 65 EPTDGKIIFMGKDVTKLKGEEL-KWFRRKAQIMFQDPYSSLDPRQTVFQIIMEPVKFHGI 123
Query: 120 NVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
V D E E V R LESVGLN + ++PH+ SGGQ QRI +AR L ++P ++ DE
Sbjct: 124 QVDDPE--EFVIRLLESVGLNEMHLY-RYPHEFSGGQRQRIALARLLALKPEFIVLDEPT 180
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
S LD S + ++LN L E ++ HG + +FI+HDL + Y+SD+I +MY G +VE G +++
Sbjct: 181 SALDVSVQANILNTLKELQEKHGFTYLFISHDLGVVKYMSDRIGVMYLGKLVEVGPADRI 240
Query: 240 FDNPLHPYTKMLLESV----PDLNVKWEFKGIEPERE-EGKVWELKGCKFAPRCSLAK-D 293
F+NPLHPYT+ML ++ PDL + + K ++ E + KGC+F PRC AK
Sbjct: 241 FENPLHPYTQMLFSAIPIPDPDLAREMKKKRMKVTGEPPSPINPPKGCRFHPRCPYAKAG 300
Query: 294 KCWKIRPEPVEVEKNHWVACHLY 316
C K P VEVEK+H+VAC LY
Sbjct: 301 LCDKEEPPMVEVEKDHYVACWLY 323
>sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPF
>gi|2119774|pir||I40544 oligopeptide transport
ATP-binding protein appF - Bacillus subtilis
>gi|677944|gb|AAA62357.1| (U20909) AppF [Bacillus
subtilis] >gi|2633491|emb|CAB12994.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 329
Score = 245 bits (620), Expect = 4e-64
Identities = 145/327 (44%), Positives = 203/327 (61%), Gaps = 19/327 (5%)
Query: 2 LLEVQNLTKIFT--SGLIGGY--QVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILR 57
+LE++++ K F SGL V+AVD V+FS+K+GE + +VGESG GK+T G+ ++R
Sbjct: 9 ILELRDVKKYFPIRSGLFQRKVGDVKAVDGVSFSLKKGETLGIVGESGCGKSTAGRTMIR 68
Query: 58 LIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
L KPT G+ILFKG+DI + ++KL KN+Q VFQDPFAS NP + + F T
Sbjct: 69 LYKPTEGQILFKGQDISNLSEEKLRKSVRKNIQMVFQDPFASLNPRKTLRSIIKEPFNTH 128
Query: 118 LKNVSDV-EKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
N+ + E++E V L VGL+P G++PH+ SGGQ QRI IARAL + P L+IAD
Sbjct: 129 --NMYTMRERNEKVEELLARVGLHP-SFAGRYPHEFSGGQRQRIGIARALTLNPELIIAD 185
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
E VS LD S + V+NL+ E ++ + +FI+HDL++ +ISD++ +MY G ++E
Sbjct: 186 EPVSALDVSIQPQVINLMEELQEEFNLTYLFISHDLSVVRHISDRVGVMYLGKMMELTGK 245
Query: 237 EKVFDNPLHPYTKMLLESVPDL----NVKWE---FKGIEPEREEGKVWELKGCKFAPRCS 289
+++DNPLHPYT+ LL SVP +VK E KG P KGC F RC
Sbjct: 246 HELYDNPLHPYTQALLSSVPVTRKRGSVKRERIVLKGELPSPANPP----KGCVFHTRCP 301
Query: 290 LAKDKCWKIRPEPVEVEKNHWVACHLY 316
+AK C + PE E +H+VACHLY
Sbjct: 302 VAKPICKEQIPEFKEAAPSHFVACHLY 328
>pir||G71014 probable dipeptide transport ATP-binding protein dppF - Pyrococcus
horikoshii >gi|3257836|dbj|BAA30519.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppF [Pyrococcus horikoshii]
Length = 329
Score = 245 bits (618), Expect = 7e-64
Identities = 142/323 (43%), Positives = 200/323 (60%), Gaps = 12/323 (3%)
Query: 2 LLEVQNLTKIF-TSGLIGGYQ-VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
+L+V+NL K F GL+ V+AVD V+F I +GE LVGESG GKTT G+ ILRLI
Sbjct: 8 VLKVENLKKYFPVRGLLRTVGWVKAVDGVSFEIYKGETFGLVGESGCGKTTTGRTILRLI 67
Query: 60 KPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLK 119
+PT G+I+F G+D+ ++L ++ + Q +FQDP++S +P V ++ R
Sbjct: 68 EPTDGRIIFMGKDVTKLKGNEL-KWFRRKAQIMFQDPYSSLDPRQTVFQIIMEPVRFHGI 126
Query: 120 NVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
V D E E V + LESVGLN + ++PH+ SGGQ QRI +AR L ++P ++ DE
Sbjct: 127 QVDDPE--EFVIKLLESVGLNEMHLY-RYPHEFSGGQRQRIALARLLALKPEFIVLDEPT 183
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
S LD S + ++LN L E ++ HG + +FI+HDL + Y+SD+I +MY G +VE G +KV
Sbjct: 184 SALDVSVQANILNTLKELQEKHGFTYLFISHDLGVVKYMSDRIGVMYLGKLVEVGPADKV 243
Query: 240 FDNPLHPYTKMLLES--VPDLNVKWEFKGIEPE---REEGKVWELKGCKFAPRCSLAK-D 293
F+NPLHPYT+ML + +PD ++ E K + V KGC+F PRC AK
Sbjct: 244 FENPLHPYTQMLFSAIPIPDPDIAREMKKKRMKVTGEPPSPVNPPKGCRFHPRCPYAKAG 303
Query: 294 KCWKIRPEPVEVEKNHWVACHLY 316
C K P VEVEK+H+VAC LY
Sbjct: 304 LCDKKEPPLVEVEKDHYVACWLY 326
>dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 322
Score = 239 bits (604), Expect = 3e-62
Identities = 138/328 (42%), Positives = 199/328 (60%), Gaps = 24/328 (7%)
Query: 2 LLEVQNLTKIFTSGLIGGY------QVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLI 55
LLEV+NLTK F + GG+ +VRAVDN++FS+ EGE++ +VGESG GK+T GK I
Sbjct: 5 LLEVKNLTKSFD--INGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKSTTGKAI 62
Query: 56 LRLIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFR 115
LRLI+P+SG++ F G +I + + M +++Q +FQDP+AS NP + ++++ +
Sbjct: 63 LRLIEPSSGEVYFAGTEITALSEGD-MRKRRRDMQIIFQDPYASLNPRHTIEKI---IRE 118
Query: 116 TFLKNVSDVEKDEL--VRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLL 173
+ + +K++L V LE+VGL+ ++PHQ SGGQ QRI IARAL V P L+
Sbjct: 119 PLIVHQIGTKKEQLERVEELLETVGLSSDHAT-RYPHQFSGGQRQRIGIARALAVHPKLV 177
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEW 233
I DE VS LD S + +LNL+ + ++ + IFI HDL++ +ISD++ +MY G +VE
Sbjct: 178 ICDEPVSALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLGRMVEM 237
Query: 234 GDTEKVFDNPLHPYTKMLLESVP-----DLNVKWEFKGIEPEREEGKVWELKGCKFAPRC 288
+++F+NP HPYT+ LL +VP K KG P +GC F RC
Sbjct: 238 ATKDQLFENPKHPYTRALLSAVPVPDPDAAKEKILLKGDVPSPSNPP----EGCAFHTRC 293
Query: 289 SLAKDKCWKIRPEPVEVEKNHWVACHLY 316
D C RP E EK H+VACHLY
Sbjct: 294 PDCMDVCKIKRPSLHEKEKGHYVACHLY 321
>gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF)
[Archaeoglobus fulgidus] >gi|7442541|pir||B69471
dipeptide transport ATP-binding protein dppF -
Archaeoglobus fulgidus >gi|2648778|gb|AAB89479.1|
(AE000980) dipeptide ABC transporter, ATP-binding
protein (dppF) [Archaeoglobus fulgidus]
Length = 323
Score = 235 bits (594), Expect = 4e-61
Identities = 139/329 (42%), Positives = 199/329 (60%), Gaps = 19/329 (5%)
Query: 2 LLEVQNLTKIFT------SGLIGGYQ--VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGK 53
+L V+NL K F L+ G + VRAVD V+F +K+GE++SLVGESG GKTT G+
Sbjct: 1 MLRVENLKKYFPVQKSVLEVLLSGRRDFVRAVDGVSFEMKQGEVLSLVGESGCGKTTTGR 60
Query: 54 LILRLIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLV 113
+I+ L +PTSGKI FK +I S +++ +++Q VFQDP+AS NP K+ LV
Sbjct: 61 IIVGLERPTSGKIYFKDREITSLSEEE-QRRMKRHIQMVFQDPYASLNPRMKIGE--HLV 117
Query: 114 FRTFLKNVSDV-EKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSL 172
+ +++ E E+ L+ VGL + + P+QLSGGQ QR+ IARA++++P
Sbjct: 118 ESLTIHGIAENDEAREMAMSMLDRVGLPGEQFFNRMPYQLSGGQRQRVAIARAMILKPDF 177
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
++ADE VSM+D S R +L+LL FRD + S++FITHDL++ + D+I +MY G I+E
Sbjct: 178 VVADEPVSMIDVSLRAAILDLLMSFRDEYNLSMLFITHDLSVARIVGDRIAVMYLGKIME 237
Query: 233 WGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWEL-KGCKFAPRCSLA 291
G T +V NP HPYT LL SVP K + +E + ++ GC++ PRC A
Sbjct: 238 IGKTREVIHNPRHPYTAALLSSVPSFVKKG--RKVEIIGDIANPIDIPSGCRYHPRCPFA 295
Query: 292 KDKCWKIRPEPVEVEKNHWVACH--LYGG 318
++KC K PE E H ACH L GG
Sbjct: 296 REKCKKEEPELEGGE--HSFACHYPLEGG 322
>gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dppF-3) [Sulfolobus
solfataricus]
Length = 323
Score = 234 bits (591), Expect = 1e-60
Identities = 128/299 (42%), Positives = 183/299 (60%), Gaps = 23/299 (7%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKL 81
VRA+DNV+ I++GE++ +VGESGSGKTT+GK++ L KPT G ++F G ++ D+
Sbjct: 35 VRALDNVSVEIRKGEVLGVVGESGSGKTTLGKVLATLEKPTGGNLIFMGMEV----NDRN 90
Query: 82 MNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVGLNP 141
+N+ K++ VFQ+P S NP KV + ++ +++E V++ LE VGL+
Sbjct: 91 INHVRKHIHMVFQNPMTSINPRMKV--------KDIVREAMKEKREERVKKLLEEVGLDY 142
Query: 142 REILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNH 201
+ K+P +LSGGQ QR+ IARAL EP LI DE S LDAS + +LNLL + +
Sbjct: 143 NYVKDKYPRELSGGQTQRVAIARALAKEPDFLILDEPTSALDASVQAQILNLLVDLQKER 202
Query: 202 GTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLNVK 261
+ +FITH++A+ YISD++IIMY G IVE G+T++V P+HPYT+ LL SVP+L K
Sbjct: 203 KLTYLFITHNIAVARYISDRVIIMYAGKIVEEGNTKEVISEPMHPYTQSLLSSVPELGKK 262
Query: 262 WEFKGIEPEREEGKVWEL----KGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACHLY 316
E + G+V L GC+F PRC A C + P VE+ VAC LY
Sbjct: 263 ------ELKPPSGEVPSLINPPSGCRFNPRCPFAMSVCKEKEPPLVEI-NGRKVACWLY 314
>pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655049|gb|AAF93782.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 331
Score = 232 bits (586), Expect = 4e-60
Identities = 136/327 (41%), Positives = 198/327 (59%), Gaps = 16/327 (4%)
Query: 1 MLLEVQNLTKIFT--SGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRL 58
+L+E +NL K F S + +RA+++V+F + + +S+VGESGSGK+T K+I ++
Sbjct: 8 LLVEGKNLVKDFAINSNALKQPMMRAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIAKM 67
Query: 59 IKPTSGKILFKGEDIWSF-DKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
PTSG I +KG DI +D LM +Y + VQ V+QDPF S NP + + F + R
Sbjct: 68 YAPTSGVIEYKGRDIQDIVSRDDLM-HYREGVQMVWQDPFGSLNPTHTI---FHHIARPL 123
Query: 118 L--KNVSDVEKDELVRRA---LESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPS 171
L K V+ K EL R LE VGL P+ K+PHQLSGGQ QR+ +AR + V
Sbjct: 124 LIHKKVTPGNKKELEERVYELLEQVGLIPPKATAAKYPHQLSGGQRQRVNLARNIAVGAE 183
Query: 172 LLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIV 231
+++ADE SMLD S R VLNL+ E + S+++ITHD+A YI++ + +MY G +V
Sbjct: 184 VVLADEPTSMLDVSIRAGVLNLMEEMKFERQMSLLYITHDIATARYIAEDLAVMYVGHMV 243
Query: 232 EWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVW--ELKGCKFAPRCS 289
EWGDT+++ +P HPYTK+L+ +VPD K + +E + E +W GC FA RC
Sbjct: 244 EWGDTDEIIHDPQHPYTKLLVSAVPDPK-KSIHEKLEGNKGEIPLWTPNSVGCPFAGRCL 302
Query: 290 LAKDKCWKIRPEPVEVEKNHWVACHLY 316
A KC + PE ++ NH+V C+L+
Sbjct: 303 YASAKCREALPEVTQLSDNHFVRCYLF 329
>gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (dppF-1) [Sulfolobus
solfataricus]
Length = 325
Score = 231 bits (583), Expect = 9e-60
Identities = 134/319 (42%), Positives = 202/319 (63%), Gaps = 11/319 (3%)
Query: 2 LLEVQNLTKIFTSG--LIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
+++V+NL FT G Y V+A+D VT SIKE EI+ +VGESGSGKTT+G++ + L
Sbjct: 14 VVKVENLKVYFTKGGMFTKKYVVKALDGVTLSIKEREIMGVVGESGSGKTTLGRVTIGLQ 73
Query: 60 KPTSGKILFKGEDIW-SFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF- 117
KPTSG + K ++ + +K KL + VQ ++QDP++S +P+ RV+D++
Sbjct: 74 KPTSGNVYIKADNKEINVNKAKLKDIS-NYVQMIYQDPYSSIDPIM---RVYDVLATPLK 129
Query: 118 LKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
K +SD++K + A+ V L P E+L +QLSGGQ QR+ IARA++V P ++ADE
Sbjct: 130 YKKMSDIDKK--IEEAMRLVDL-PLELLENRVYQLSGGQRQRLSIARAIVVNPKYIVADE 186
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTE 237
+MLDAS + ++L ++ + R++ G S ++ITH+L + ISD+II++Y G IVE G++
Sbjct: 187 PTTMLDASLKGEILKIIKDARESKGFSFMYITHELPIAKIISDRIIVLYLGKIVELGNSN 246
Query: 238 KVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWK 297
++ NPLHPYT+ L+E P ++ K E + + V KGC F PRC A KC +
Sbjct: 247 EIIKNPLHPYTQGLIEVYPRIDPSLRDKIKEIKIKVDIVRPDKGCVFYPRCPFAMPKCKE 306
Query: 298 IRPEPVEVEKNHWVACHLY 316
PE EV +NH+VAC LY
Sbjct: 307 QEPELKEVSQNHYVACWLY 325
>dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 338
Score = 229 bits (579), Expect = 3e-59
Identities = 141/325 (43%), Positives = 194/325 (59%), Gaps = 19/325 (5%)
Query: 2 LLEVQNLTKIFT--SGLIGGY--QVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILR 57
LL+V+ L + F G++G V+AVD+V+F+I EGE VS+VGESG GK+T G+ ILR
Sbjct: 5 LLKVEGLKQYFPIKGGILGRTVNHVKAVDDVSFTIYEGETVSIVGESGCGKSTTGRAILR 64
Query: 58 LIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
L +PT GKI F+GED+ S +K + M K++Q +FQDP+AS NP + +V +
Sbjct: 65 LDEPTDGKIEFQGEDLLSLNKRE-MRKKRKDLQIIFQDPYASINPRQTIRQVLEEAME-I 122
Query: 118 LKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
K V ++ E +R +++VGL + +FPH+ SGGQ QRI IARAL V P L++ DE
Sbjct: 123 QKVVPRDKRGERIRELMDTVGLGSHQA-DRFPHEFSGGQRQRIGIARALSVNPKLIVCDE 181
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTE 237
AVS LD S + V+NLL + + +FI+HDL + +ISD++I+MY G IVE D
Sbjct: 182 AVSALDVSIQAQVINLLKRLQREFKLTYLFISHDLGVVRHISDRVIVMYLGRIVEIADKT 241
Query: 238 KVFDNPLHPYTKMLLES--VPDLNVKWE---FKGIEPEREEGKVWELKGCKFAPRCSLAK 292
+F+NP HPYTK LL + VPD K E KG P + GC+F RC A
Sbjct: 242 SLFENPQHPYTKALLSAIPVPDPEKKKERIILKGDVP----SPIDPPNGCRFHTRCPFAT 297
Query: 293 DKCWKIRPE---PVEVEKNHWVACH 314
DKC PE ++ H ACH
Sbjct: 298 DKCRTETPELRTADYMKDGHLAACH 322
>pir||A72618 probable oligopeptide transport ATP-binding protein APE1402 -
Aeropyrum pernix (strain K1) >gi|5105085|dbj|BAA80399.1|
(AP000061) 347aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 229 bits (577), Expect = 4e-59
Identities = 132/318 (41%), Positives = 185/318 (57%), Gaps = 10/318 (3%)
Query: 1 MLLEVQNLTKIFT--SGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRL 58
+L+E L K F S V+AVDNVT I G+ + LVGESGSGKTT G++ILRL
Sbjct: 29 LLVETVGLKKYFPVKSLFFTRAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRL 88
Query: 59 IKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL 118
+PT G+I F G D+ + + + + + Q +FQDP+ S NP + + +
Sbjct: 89 EEPTGGRIFFDGIDVMKL-RGRGLKEFRRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHG 147
Query: 119 KNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEA 178
V D++ E + L VGLN + ++PH+ SGGQ QRI IAR L ++P ++ DE
Sbjct: 148 IKVGDLQ--EYIVSLLYQVGLNETHLY-RYPHEFSGGQRQRIAIARVLALKPEFIVLDEP 204
Query: 179 VSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEK 238
S LD S + +LNLL + + + + +FI+HDL + Y+SD I +MY G IVE+G+ E+
Sbjct: 205 TSALDVSVQAQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEE 264
Query: 239 VFDNPLHPYTKMLLES--VPDLNVKWEFKGIEPERE-EGKVWELKGCKFAPRCSLAKDKC 295
VF+ PLHPYTK+LLES VPD V I + E + GC+F RC +A DKC
Sbjct: 265 VFEKPLHPYTKVLLESIPVPDPEVAKRRSRIRIKGEPPSPINPPSGCRFRTRCPIAVDKC 324
Query: 296 WKIRPEPVEVEKNHWVAC 313
+ P EVE+ HWVAC
Sbjct: 325 LE-EPPLEEVERGHWVAC 341
>pir||G75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459330|gb|AAF11129.1|AE002000_5 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 346
Score = 229 bits (577), Expect = 4e-59
Identities = 133/318 (41%), Positives = 191/318 (59%), Gaps = 10/318 (3%)
Query: 2 LLEVQNLTKIFT--SGLIGGY--QVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILR 57
LLEV NL K F GL+ V+AV+++TF + +GE+V L+GESGSGKTT G+ +LR
Sbjct: 27 LLEVNNLQKYFPIRGGLMSRVVANVKAVNDITFRVGKGEVVGLIGESGSGKTTAGRALLR 86
Query: 58 LIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
LI+PT G+++F G DI K ++ +Y + +Q +FQDPFAS NP V + +
Sbjct: 87 LIEPTGGQVIFNGTDITKLGKSQMRDYR-REMQIIFQDPFASLNPRMTVSDILGEAMQIH 145
Query: 118 LKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
+ D + L+ VGL P E +G++PH+ SGGQ QRI IARAL V+PS ++ADE
Sbjct: 146 NLHPGKARVDRIAE-LLQRVGLRP-EHMGRYPHEFSGGQRQRIGIARALAVDPSFIVADE 203
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTE 237
VS LD S + V+NL+ + ++ G +V+FI HDL + YI D++I+MY G I+E +
Sbjct: 204 PVSALDVSIQAQVVNLIQDLQEELGLTVLFIAHDLHVVEYICDRMIVMYLGRIMEIAPSR 263
Query: 238 KVFDNPLHPYTKMLLES--VPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKC 295
++ NP HPYT+ LL + VPD +K + +E + + GC F RC A C
Sbjct: 264 ELNRNPKHPYTEALLSASPVPDPTIKRQRIILEGD-IPSPINPPSGCVFRTRCRYAIADC 322
Query: 296 WKIRPEPVEVEKNHWVAC 313
I PE EV +H+ AC
Sbjct: 323 ANIVPELREVSPDHFKAC 340
>pir||F75202 dipeptide abc transporter, dipeptide-binding protein PAB0094 -
Pyrococcus abyssi (strain Orsay)
>gi|5457578|emb|CAB49069.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 323
Score = 228 bits (574), Expect = 1e-58
Identities = 120/309 (38%), Positives = 192/309 (61%), Gaps = 21/309 (6%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTS---GKILFKGEDIWSFDK 78
V+A+D V+F I++GEI++L+GE+G GK+ K I+RL+ + GKI++KG ++ +
Sbjct: 23 VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPE 82
Query: 79 DKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVG 138
++ K + +FQDP S NP++ ++ +F+ V DE+V+ L+ V
Sbjct: 83 REMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIVK-LLKMVK 141
Query: 139 L-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEF 197
+ +P + + +P +LSGG QR++IA L +PSLLIADE + LD + + ++NL+ E
Sbjct: 142 IPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLEL 201
Query: 198 RDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPD 257
R+ TS++ ITH+ + ++D++++MY G +VE E++FDNPLHPYT+ LL ++P
Sbjct: 202 REKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALP- 260
Query: 258 LNVKWEFKGIEPERE----EGKVWEL----KGCKFAPRCSLAKDKCWKIRPEPVEVEKNH 309
+G + ERE G+V L KGC+F PRC AK+ C K +P+ +EVEK H
Sbjct: 261 -------RGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEH 313
Query: 310 WVACHLYGG 318
+VACHLYGG
Sbjct: 314 YVACHLYGG 322
>gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD)
[Archaeoglobus fulgidus] >gi|7445611|pir||A69471
dipeptide ABC transporter, ATP-binding protein (dppD)
homolog - Archaeoglobus fulgidus
>gi|2648781|gb|AAB89480.1| (AE000980) dipeptide ABC
transporter, ATP-binding protein (dppD) [Archaeoglobus
fulgidus]
Length = 313
Score = 225 bits (568), Expect = 5e-58
Identities = 134/325 (41%), Positives = 198/325 (60%), Gaps = 21/325 (6%)
Query: 1 MLLEVQNLTKIFTS--GLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRL 58
MLL+++NLT IF + G+ VRAVDNV+ S+++GE +S+VGESG GK+T+ ++RL
Sbjct: 2 MLLDIENLTTIFRTRRGV-----VRAVDNVSMSVEKGEFISIVGESGCGKSTLAHSVMRL 56
Query: 59 I----KPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVF 114
I + + GKI+F G D+ S +++ + VFQDP S +PL K+ D +
Sbjct: 57 IDYPGEISGGKIIFDGVDLLSLGDEEMREIRGSKIGMVFQDPMTSLDPLEKIG---DQIS 113
Query: 115 RTFLKNVSDVEKD--ELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSL 172
T ++++ +K+ ++ R LE VGL P + +PHQLSGGQ QR++IA A+ + P L
Sbjct: 114 ETIMEHMDVTKKEAWQMAREMLEKVGLQPERV-DSYPHQLSGGQRQRVMIAMAISLNPKL 172
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
LIADE + LD + +++LL + + G +V+ ITHD AL SD+I +MY G +VE
Sbjct: 173 LIADEPTTALDVIVQEKIMDLLEDMK-REGRAVMLITHDFALAAERSDRIAVMYAGWLVE 231
Query: 233 WGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAK 292
G EK+ + PLHPYTK L++SVPD+ + E K + P + +GC+F PRCS A
Sbjct: 232 LGKAEKLTNEPLHPYTKGLIQSVPDVWMDKEIKPL-PGFPPDLINPPEGCRFRPRCSEAS 290
Query: 293 DKCWKIRPEPVEVEKNHWVACHLYG 317
+C K PE EV+ V C LYG
Sbjct: 291 KRCMKEPPE-FEVD-GRVVKCWLYG 313
>pir||B72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980543|gb|AAD35151.1|AE001692_8 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 338
Score = 225 bits (568), Expect = 5e-58
Identities = 143/329 (43%), Positives = 196/329 (59%), Gaps = 23/329 (6%)
Query: 2 LLEVQNLTKIF--TSGL---IGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLIL 56
LLEV+ L K F T G + GY VRAVD+V+F IK+GE ++LVGESG GKTT K IL
Sbjct: 3 LLEVKGLKKYFPLTKGFFKKVVGY-VRAVDDVSFDIKQGETLALVGESGCGKTTTAKSIL 61
Query: 57 RLIKPTSGKILF----KGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDL 112
R I PT G ++ K +I +D+L Y + +Q +FQ+P+ S NP KV ++
Sbjct: 62 RAIDPTDGDVILHLDGKDVNIAKLSRDELKPYR-RYMQMIFQNPYTSLNPRMKVK---EI 117
Query: 113 VFRTFLKN--VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEP 170
V L N E ++ V L++VGL P E + ++PH SGGQ QRI+IARA+ + P
Sbjct: 118 VGEPLLVNGIAKGKELEDRVAELLKAVGLRP-EYMIRYPHAFSGGQRQRIVIARAIALRP 176
Query: 171 SLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSI 230
L++ DE S LD S R +LNLL + ++ + +FITHDL++ +ISD++ +MY G I
Sbjct: 177 KLVVCDEPTSALDVSIRAQILNLLMDLQEEFALTYLFITHDLSVVEHISDRVAVMYLGKI 236
Query: 231 VEWGDTEKVFDNPLHPYTKMLLESV--PDLNVKWEFKGIEPEREEGKVWELKGCKFAPRC 288
VE TE++F+NP HPYT+ LL SV PD +++ E IE E GC F PRC
Sbjct: 237 VELSSTEEIFENPKHPYTETLLRSVPKPDPDLREELVPIEGE-VPNPANPPSGCYFHPRC 295
Query: 289 SLAKDKCWKIRPE--PVEVEKN-HWVACH 314
AK C + PE + E N H+VACH
Sbjct: 296 PYAKSICKEEYPEFRNLGTEDNPHYVACH 324
>emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related protein
[Thermoplasma acidophilum]
Length = 704
Score = 223 bits (562), Expect = 2e-57
Identities = 125/314 (39%), Positives = 184/314 (57%), Gaps = 25/314 (7%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKIL--FKGEDI----WS 75
VRAVD++TF+I++GEI+ +VGESGSGKTT+GK +L L PT+GKI F D+ +
Sbjct: 377 VRAVDDITFAIRKGEILGIVGESGSGKTTLGKTLLGLYSPTAGKITYSFSNGDVEITPTT 436
Query: 76 FDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL--------KNVSDVEKD 127
+ + + + K Q +FQDP+ S NP V +D+V + K D+ K+
Sbjct: 437 SESELMRSSIRKETQMIFQDPYDSLNPKLTV---YDIVAEPIIARRYHKGNKEKDDIYKN 493
Query: 128 -----ELVRRALESVGLNPRE-ILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSM 181
LV+ AL L P E L ++PH+LSGG+ QR+ ARAL++ +IADE SM
Sbjct: 494 PLEILNLVKIALAKASLKPVENYLFRYPHELSGGERQRVATARALVLNSEFIIADEPTSM 553
Query: 182 LDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFD 241
LD S R +N++ E R G ++++I+HD+A YY+SDKI++MY G VE G + + +
Sbjct: 554 LDVSIRASFMNMMKEIRSKEGITMVYISHDIASTYYMSDKILVMYLGKAVEMGSADAIIN 613
Query: 242 NPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWEL-KGCKFAPRCSLAKDKCWKIRP 300
PLHPYTK L++++P W+ I+ E G + KGC+F RC +D C K P
Sbjct: 614 EPLHPYTKALIKAIPTPFSDWDPSKIDIIGEIGNAINVPKGCRFYNRCIYRQDIC-KDNP 672
Query: 301 EPVEVEKNHWVACH 314
V+ ++HW CH
Sbjct: 673 PTVKGAEDHWYLCH 686
Score = 188 bits (473), Expect = 7e-47
Identities = 112/311 (36%), Positives = 177/311 (56%), Gaps = 22/311 (7%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTS---GKILFKGEDIWS--- 75
V A+ +V+F +K+G + +VGESGSGK+T+ I+ L+ + G I KG + S
Sbjct: 15 VHALSDVSFDLKQGRFLGIVGESGSGKSTLALSIMSLLPENAMMRGSIYLKGTEYISDVI 74
Query: 76 -----------FDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDV 124
+D L N +KN+ VFQ SFNP+Y + R VF+ +D
Sbjct: 75 INNAKKKKARKILEDNLRNIRWKNISMVFQGAMNSFNPVYTIRRQMFEVFKIHTTLDND- 133
Query: 125 EKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDA 184
E ++ V AL GLN +L +PH+LSGG QR +IA AL ++P ++IADE + LD
Sbjct: 134 EIEKKVEEALRMAGLNI-SVLDMYPHELSGGMKQRAVIAMALSLDPDIVIADEPTTGLDV 192
Query: 185 STRIDVLNLLGEFRDNHG-TSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNP 243
T+ ++++ L + ++N S+I I+HDL + ++D+++++Y G + E+G+ ++F N
Sbjct: 193 ITQAEIISQLKKLKENGKIKSLILISHDLGVVSQLADEVMVLYAGKVFEYGEKSRIFQNT 252
Query: 244 LHPYTKMLLESVPDL-NVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEP 302
+PYT L+ S P + N K +GI P + KGCKFA RC +A+D C + PE
Sbjct: 253 ANPYTYKLIGSYPSIRNAKRYVEGI-PGSLPDPMKIGKGCKFADRCYMARDVCREEEPEL 311
Query: 303 VEVEKNHWVAC 313
++VE NH+ AC
Sbjct: 312 IKVEDNHYSAC 322
>pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AAC07852.1|
(AE000774) ABC transporter [Aquifex aeolicus]
Length = 305
Score = 222 bits (559), Expect = 6e-57
Identities = 134/321 (41%), Positives = 199/321 (61%), Gaps = 24/321 (7%)
Query: 2 LLEVQNLTKIFT--SGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
LL +QNLTK++ +G + A+ V+ SIK+G+ +++VGESGSGK+T+GK+ILRL
Sbjct: 3 LLSIQNLTKVYKVPAGFLRKKNFFALKEVSLSIKQGDFLAIVGESGSGKSTLGKIILRLE 62
Query: 60 KPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFD---LVFRT 116
KPT GK+ FKG+DI+S K+ Y + V AVFQDP +S NP KV+ + + +V R
Sbjct: 63 KPTKGKVSFKGKDIFSMGKE-----YTRKVSAVFQDPRSSLNPRMKVEEILEEPLIVHRV 117
Query: 117 FLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
+ E V + L+ V L+ E+L K P Q+SGGQ QR+ IARAL++EP L++AD
Sbjct: 118 -------KGRKERVLKVLQRVRLS-EELLEKRPLQISGGQAQRVAIARALILEPELIVAD 169
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
E + LD S + ++L L E ++ G S F+THD+ + +++ + ++Y G ++E G
Sbjct: 170 EPTASLDVSVQEEILELFKEL-NSKGISFFFVTHDIRVVEKVANMVGVIYAGILMELGKK 228
Query: 237 EKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCW 296
E+V NPLHPYTK LLE+VP + K + K ++ +EE +GC F PRC A ++C
Sbjct: 229 EEVLKNPLHPYTKFLLENVPVRHPK-DRKPLKYLQEEEVSIPEEGCPFYPRCPEAMEECK 287
Query: 297 K-IRPEPVEVEKNHWVACHLY 316
K IR V +AC+LY
Sbjct: 288 KFIRRSEV---NGRLLACNLY 305
>pir||C72536 probable oligopeptide transport ATP-binding protein APE1576 -
Aeropyrum pernix (strain K1) >gi|5105263|dbj|BAA80576.1|
(AP000062) 377aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 377
Score = 220 bits (555), Expect = 2e-56
Identities = 128/330 (38%), Positives = 192/330 (57%), Gaps = 38/330 (11%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGE---------- 71
V+AVD V+FSI GE+ LVGESG GKTT GK ILRL+K T G++ FK +
Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERR 106
Query: 72 ----------DIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNV 121
D+ + + K + +Q V+QDP+ S NP + + R+ + + ++
Sbjct: 107 GVKSLGDGFVDLLAVPRRKFKPLR-RELQIVYQDPYGSLNPRFTIKRILEDPL--LIHSI 163
Query: 122 SDV-EKDELVRRALESVGLNPR-EILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
+ E++E+V R LE+V L P + + ++PHQLSGGQ QR+ IARA ++ PSL++ADE V
Sbjct: 164 GNAREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPV 223
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
SMLD S R ++L LL FR+ GTS++FITHDLA+ YI D+I +MY G IVE GD ++
Sbjct: 224 SMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARRI 283
Query: 240 FDNPLHPYTKMLLESV--PDLNVKWEFKGIEPEREEGKVWEL-KGCKFAPRCSLAKDKCW 296
+ P+HPYTK L+ ++ PD + + + + + + E + GC+F PRC +
Sbjct: 284 IERPIHPYTKALVAAIPEPDPSNRKKLREVPIKGEIPSAAAIPPGCRFHPRCVEYEQDMD 343
Query: 297 KIR----------PEPVEVEKNHWVACHLY 316
++R P E E++ V+C Y
Sbjct: 344 RLREMCPVKEPPLKRPTEGEEDRRVSCWRY 373
>pir||E71130 probable oligopeptide transport ATP-binding protein APPD -
Pyrococcus horikoshii >gi|3257220|dbj|BAA29903.1|
(AP000003) 327aa long hypothetical oligopeptide
transport ATP-binding protein APPD [Pyrococcus
horikoshii]
Length = 327
Score = 217 bits (546), Expect = 2e-55
Identities = 117/321 (36%), Positives = 194/321 (59%), Gaps = 17/321 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
+LE++ LT + + V A+ NV+FS+K+G IV ++GESGSGK+T+G ILR +
Sbjct: 4 ILEIEGLTVKYKTRY---GTVHALSNVSFSVKKGSIVGIIGESGSGKSTLGHTILRTLPE 60
Query: 62 T----SGKILFKGEDIWSFDKDKLMNYY-YKNVQAVFQDPFASFNPLYKV-DRVFDLVFR 115
SGKI+F+G D+ D++ + +K + +FQ+ +F+P++++ D++ D+ +
Sbjct: 61 NARIESGKIMFEGSDLLEIDEEVFRREFRWKKISMIFQNSMNAFSPVHRIQDQLLDVARK 120
Query: 116 TFLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
F N S E E+++ L ++ +L K+PH+LSGGQ QR+ I ALL +P ++IA
Sbjct: 121 CF-PNKSRNELLEIIKEKLRIANID-ESVLKKYPHELSGGQRQRVAIGMALLADPEIVIA 178
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE + LD T+ +LN L E + + G +++ ITHD+++ +S ++++Y G ++E+GD
Sbjct: 179 DEPTTGLDVVTQYQILNRLKEIQKDLGITLLLITHDVSVVAALSTDVLVLYAGKVLEYGD 238
Query: 236 TEKVFDNPLHPYTKMLLESVPDLNVK--WEFKGIEPEREEGKVWELKGCKFAPRCSLAKD 293
++VF N HPYT +LL S P++ + +E G P+ GC F PRC A D
Sbjct: 239 IKRVFKNSHHPYTYLLLRSYPEMGKEKLYEIPGSPPDLRNPP----SGCVFHPRCPYATD 294
Query: 294 KCWKIRPEPVEVEKNHWVACH 314
C K P+ VE+E+ H+ ACH
Sbjct: 295 LCRKEEPKLVEIEEGHFSACH 315
>gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola]
Length = 385
Score = 217 bits (546), Expect = 2e-55
Identities = 121/300 (40%), Positives = 184/300 (61%), Gaps = 6/300 (2%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKL 81
V A D + I EGE V LVGESG GK+T+G+ IL+L KPT+G+I F+GE+I ++ ++
Sbjct: 85 VIANDGIDLVIHEGETVGLVGESGCGKSTLGRTILKLYKPTAGEIFFEGENITNYTVTQM 144
Query: 82 MNYYYKNVQAVFQDPFASFNPLYKVDRVF-DLVFRTFLKNVSDVEKDELVRRALESVGLN 140
M K +Q +FQDP++S NP V ++ + + + D ++ V+ + + GL
Sbjct: 145 MPLR-KKMQIIFQDPYSSLNPKMTVGQIIGEALLEHGMFKKKDPAYEKYVKEIMNTCGLA 203
Query: 141 PREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDN 200
I ++PH+ SGGQ QRI IARAL ++P ++ DEAVS LD S + ++NLL + +
Sbjct: 204 DYMIY-RYPHEFSGGQRQRIGIARALALKPKFIVCDEAVSALDVSIQSQIINLLNDLQKE 262
Query: 201 HGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVP--DL 258
S +FI+HDL++ +ISD+I +MY G++VE+ D +++ NPLHPYTK+LL ++P DL
Sbjct: 263 FNLSYLFISHDLSVVKHISDRIGVMYLGNMVEFTDKREMYANPLHPYTKVLLSAIPETDL 322
Query: 259 NVKWEFKGIEPERE-EGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACHLYG 317
+ I E + + GCKF RC +AKD C + P+ E + H+VACH G
Sbjct: 323 QKMRTKRRILLEGDIPSNIITPTGCKFHTRCPIAKDICKREIPQFKEEKPGHFVACHFSG 382
>sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TS
>gi|1486423|emb|CAA92401.1| (Z68203) OppF homologue
[Rhizobium sp.] >gi|2182649|gb|AAB91872.1| (AE000098)
Y4tS [Rhizobium sp. NGR234]
Length = 353
Score = 215 bits (542), Expect = 5e-55
Identities = 126/320 (39%), Positives = 195/320 (60%), Gaps = 10/320 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQ-----VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLIL 56
LL+V++LTK + G ++ VRAV++V+F+++ GE + +VGESG GK+T+ +L++
Sbjct: 5 LLKVESLTKHYPIEA-GWFKTNVPVVRAVEDVSFTVQAGETLCVVGESGCGKSTLARLLM 63
Query: 57 RLIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
RLI PTSG++L +G DI K++L + + +Q VFQDP++S NP ++
Sbjct: 64 RLIDPTSGRVLVEGTDIAGLRKNEL-RAWRRRMQMVFQDPYSSLNPRLTAGQIITEPVEN 122
Query: 117 FLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
F + +S ++ EL L VG++P E+ ++P ++SGGQ QR+ IARAL ++PSL+IAD
Sbjct: 123 F-ECLSRRQRQELATDLLRKVGMSP-EMASRYPSEMSGGQRQRLGIARALALKPSLIIAD 180
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
EAVS LD S + +LNLL + + G ++IFI+HDLA+ +I ++ +MY G IVE
Sbjct: 181 EAVSALDVSVQAQILNLLMDLQQETGIALIFISHDLAVVEHIGHRVAVMYLGRIVELSPR 240
Query: 237 EKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPERE-EGKVWELKGCKFAPRCSLAKDKC 295
+ +F P+HPYT+ L+ + P + + E E V GC F PRC LA D+C
Sbjct: 241 DALFAKPVHPYTEALIAAAPVPDPARARLEVPLEGEVPSPVNPPSGCAFHPRCPLAVDRC 300
Query: 296 WKIRPEPVEVEKNHWVACHL 315
P V + VACH+
Sbjct: 301 RAEVPPLVPMPDGRAVACHV 320
>sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1074010|pir||E64188 dipeptide transport ATP-binding
protein dppF - Haemophilus influenzae (strain Rd KW20)
>gi|972898|gb|AAA95975.1| (U17295) DppF [Haemophilus
influenzae] >gi|1574111|gb|AAC22837.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppF)
[Haemophilus influenzae Rd]
Length = 327
Score = 215 bits (542), Expect = 5e-55
Identities = 117/296 (39%), Positives = 180/296 (60%), Gaps = 8/296 (2%)
Query: 21 QVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDK 80
QV+A+D V+F ++ G+ +++VGESG GK+T+G+L+ + +PT G++ +KG + D +
Sbjct: 33 QVKALDGVSFQLERGKTLAVVGESGCGKSTLGRLLTMIEEPTKGELYYKGHNFLENDSET 92
Query: 81 LMNYYYKNVQAVFQDPFASFNPLYKVDRVFD--LVFRTFLKNVSDVEKDELVRRALESVG 138
K +Q VFQ+P+AS NP K+ + + L+ T L S E+ E V +E VG
Sbjct: 93 KA-LRRKKIQIVFQNPYASLNPRKKIGSILEEPLIINTKL---SAKERREKVLSMMEKVG 148
Query: 139 LNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFR 198
L E ++PH SGGQ QRI IAR L+++P +++ADE VS LD S R VLNL+ + +
Sbjct: 149 LRA-EFYDRYPHMFSGGQRQRIAIARGLMLDPDVVVADEPVSALDVSVRAQVLNLMMDLQ 207
Query: 199 DNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDL 258
D G S +FI+HDL++ +I+D++++MY G +E G TE++F NP HPYTK LL + P L
Sbjct: 208 DELGLSYVFISHDLSVVEHIADEVMVMYLGRCIEKGTTEQIFSNPQHPYTKALLSATPRL 267
Query: 259 NVKWEFKGIEPERE-EGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVAC 313
+ + I+ E + KGC F PRC A +KC + +P + +AC
Sbjct: 268 SPNLRRERIKLTGELPSPINPPKGCAFNPRCWKATEKCRENQPHLEQHTDGKLIAC 323
>emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding protein appF related
protein [Thermoplasma acidophilum]
Length = 314
Score = 215 bits (541), Expect = 7e-55
Identities = 120/299 (40%), Positives = 176/299 (58%), Gaps = 22/299 (7%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKL 81
VRA+D+V+ SI +G ++ +VGESGSGK+T+GK+++ L PT G++ FKG + + K+
Sbjct: 33 VRALDDVSISIMDGNVIGVVGESGSGKSTMGKVMVTLETPTDGELYFKGTRVTKSEYPKI 92
Query: 82 MNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVGLNP 141
K V VFQ+P S NP KV + F + ++ + VGL+
Sbjct: 93 R----KQVDMVFQNPATSLNPKMKVKDIVSEPLGHF--------DEGAIKEVILKVGLSY 140
Query: 142 REILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNH 201
E+ K +LSGGQ+QR+ IARAL+ +P LL+ DE S LD S + VLNLL + + +
Sbjct: 141 DEVKDKQSRELSGGQVQRVAIARALMKKPELLVLDEPTSALDESIQAQVLNLLVDLQTEY 200
Query: 202 GTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLNVK 261
+ IFITH++ + YISD I+++Y G IVE+G T +V PLHPYT++LL SVP ++VK
Sbjct: 201 KMTYIFITHNILVAKYISDYIVVLYAGKIVEYGPTSEVLSKPLHPYTQLLLSSVPTVDVK 260
Query: 262 WEFKGIEPEREEGKVWEL----KGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACHLY 316
+ + G V L +GC+F PRC +KC K P + +N+ VAC LY
Sbjct: 261 ------DVKPPVGDVPSLINLPQGCRFNPRCPFVMEKCRKEEPPLISQGQNYQVACWLY 313
>gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 324
Score = 214 bits (540), Expect = 9e-55
Identities = 131/334 (39%), Positives = 203/334 (60%), Gaps = 36/334 (10%)
Query: 2 LLEVQNLTKIFTS--GLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
L+E++ ++ IF GL + A+ +V+ S+ +G+++ ++GESG+GKTT+G++I+ L
Sbjct: 3 LMELKGVSVIFEDKVGLFKKRKFYALKDVSLSMNQGDLLIVLGESGAGKTTLGRVIVGLQ 62
Query: 60 KPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLK 119
KPTSG++++ G +IW +K K+ Y K+VQ + QDP+++ P K V +++ L+
Sbjct: 63 KPTSGEVVYDGYNIWK-NKRKIFKKYRKDVQLIPQDPYSTL-PFNKT--VEEILVAPILR 118
Query: 120 NVSDVEKDELVRRA---LESVGLNP-REILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
+ KDEL +R LE V L P E LGK+PHQLSGGQ QR+ IAR+L V P +++A
Sbjct: 119 -WEKINKDELRKRLINLLELVKLTPAEEFLGKYPHQLSGGQKQRLSIARSLSVNPRIIVA 177
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALG---YYISDK--IIIMYRGSI 230
DE V+M+DAS RI +LN L E ++ +++FITHD+ + Y++ DK I+M+ G I
Sbjct: 178 DEPVTMVDASLRIGILNTLAEIKNRLNLTMVFITHDIPIARYFYHLFDKGNTIVMFAGRI 237
Query: 231 VEWGDTEKVFDNPLHPYTKMLLESVP-------DLNVKWEFKGIEPEREEGKVWELKGCK 283
VE D E++ +PLHPYT L++ P ++NVK ++ +E KGC
Sbjct: 238 VERADLEEILKDPLHPYTNDLIKLTPSIDNLYKEINVKINYERVE-----------KGCP 286
Query: 284 FAPRCSLAKDKCWKIRPEPVEVEKNHWVACHLYG 317
+ RC A D C EP + +H VAC LYG
Sbjct: 287 YRLRCPFAMDIC--KNEEPKLFKYSHEVACFLYG 318
>gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sulfolobus
solfataricus]
Length = 617
Score = 214 bits (539), Expect = 1e-54
Identities = 118/263 (44%), Positives = 179/263 (67%), Gaps = 11/263 (4%)
Query: 1 MLLEVQNLTKIF--TSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRL 58
+++++ NL+KI+ LI + AV++V+F +K+G I +LVG SG GK+TI K++ +
Sbjct: 355 VVMKILNLSKIYYIRKNLILSEPINAVNDVSFELKKGTITALVGGSGHGKSTIAKILAGM 414
Query: 59 IKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL 118
I+ TSGKI+ G+D+ + M +Y +NVQ +FQDP++S +P + V + R L
Sbjct: 415 IQQTSGKIILLGKDVSEYGVRNSM-WYKENVQMIFQDPYSSLDPRHTVRWHVE---RPLL 470
Query: 119 KNVSDVEKDELVRRALE---SVGLNPRE-ILGKFPHQLSGGQLQRILIARALLVEPSLLI 174
+ KD+L+ + +E +VGL P E L K+PH+LSGG+ QR+ IARA VEP +L+
Sbjct: 471 IHKKVSNKDQLLPKIIEVLKNVGLKPPEKYLYKYPHELSGGERQRVAIARATAVEPKVLV 530
Query: 175 ADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWG 234
ADE VSMLDAS R +LNL+ +F+ N G S+++ITHD+A YI+D+I+++Y+G IVE G
Sbjct: 531 ADEPVSMLDASLRAGILNLIKKFKKN-GISILYITHDIATVNYIADEIMVIYKGRIVEKG 589
Query: 235 DTEKVFDNPLHPYTKMLLESVPD 257
+T +V NP H YTK L+E+VPD
Sbjct: 590 NTYEVISNPSHEYTKRLIEAVPD 612
Score = 156 bits (390), Expect = 4e-37
Identities = 102/306 (33%), Positives = 159/306 (51%), Gaps = 16/306 (5%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTS----GKILFKGEDIWSFD 77
V V NV F + EI ++ GESG GK+T+ I L+K G + K +DI S
Sbjct: 25 VIGVTNVNFEVYPNEIFAIAGESGCGKSTLAMAIYGLLKYPGVVLRGHVYLKDKDILSIT 84
Query: 78 KDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKD-ELVRRALES 136
+++L K V Q + +P+ K+ D + R + + +VE+ +L++ LE
Sbjct: 85 QEELRKLRMKEFVYVPQFAMDALDPVAKIG---DQMMRAAVSHGVNVEEARKLIKEKLEL 141
Query: 137 VGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGE 196
V L P ++ +PH+LSGG QR++IA ++L+ PSL+I DE + LD + ++L L
Sbjct: 142 VDL-PYNVVNMYPHELSGGMRQRVVIATSILLNPSLIILDEPTTGLDVIVQYEILKDLKR 200
Query: 197 FRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVP 256
+ G S++ I+HD+++ ISD++ IMY G IVE G E++ P HPYT +L+ S+P
Sbjct: 201 IQRQLGVSLVIISHDISMLLMISDRVGIMYAGEIVEIGSKEEIIKRPSHPYTYLLISSLP 260
Query: 257 DLNVKWEFKGI----EPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVA 312
L VK K + P KV C+F RC +KC + P ++ H
Sbjct: 261 SL-VKRREKLLSIPGNPPLMLSKV--PNSCRFYDRCPFKMEKCSTLNPALGDIMDGHKAR 317
Query: 313 CHLYGG 318
C L G
Sbjct: 318 CFLQKG 323
>pir||D72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981012|gb|AAD35586.1|AE001726_20 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 327
Score = 213 bits (537), Expect = 2e-54
Identities = 114/302 (37%), Positives = 178/302 (58%), Gaps = 9/302 (2%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI----KPTSGKILFKGEDIWSFD 77
V+AVD V+F ++EGE + +VGESGSGK+ I+RL+ K GKI+FKG ++
Sbjct: 15 VKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLDQNGKIVDGKIIFKGRNLLELS 74
Query: 78 KDKLMNYYYKNVQAVFQDPFASFNPLYKV-DRVFDLVFRTFLKNVSDVEKDELVRRALES 136
++++ K + +FQ+P + NP++ + D++ + + +NVS+ E ++ L
Sbjct: 75 ENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAII--LHQNVSEKEARKMAIDLLRK 132
Query: 137 VGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLG 195
VG+ P + + ++PHQLSGG QR +IA AL PSLLIADE + LD + + +L L+
Sbjct: 133 VGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPTTALDVTIQAQILELMK 192
Query: 196 EFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESV 255
E + +G ++I ITHD+ + +SDK+ +MY G +VE+GD + +F P HPYT LLES+
Sbjct: 193 ELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTIFTEPKHPYTYALLESI 252
Query: 256 PDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCS-LAKDKCWKIRPEPVEVEKNHWVACH 314
P ++V+ E P + GCKF PRC K KC PE +++ NH V C
Sbjct: 253 PRIDVEQERLKSIPGNVPDPLNFPPGCKFHPRCEFFEKGKCDVEEPELEDLDGNHKVRCF 312
Query: 315 LY 316
+
Sbjct: 313 FW 314
>pir||G75026 oligopeptide transport ATP-binding protein appd. PAB1196 -
Pyrococcus abyssi (strain Orsay)
>gi|5459167|emb|CAB50653.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPD. [Pyrococcus abyssi]
Length = 319
Score = 213 bits (537), Expect = 2e-54
Identities = 123/321 (38%), Positives = 190/321 (58%), Gaps = 14/321 (4%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
+LEV+NL + + V+AVD+VTF +++GE++ L GESG GK++IG ++ + +P
Sbjct: 5 ILEVKNLKMYYFTSR---GPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
Query: 62 ----TSGKILFKGEDIWSFDKDKLMNYY-YKNVQAVFQDPFASFNPLYKV--DRVFDLVF 114
SG I G +I +D L ++ + +FQ + NP+Y V + L++
Sbjct: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
Query: 115 RTFLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLI 174
+ +S + + + LE VGL+P EI+ ++PH+LSGG QR++IA AL++EP ++I
Sbjct: 122 H---RGMSREDALDRAMKYLELVGLDP-EIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
Query: 175 ADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWG 234
ADE + LD + ++NL+ + G S+IFITHDL++ ISDKI IMY G IVE G
Sbjct: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
Query: 235 DTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDK 294
+EKV+ P HPYT+ LL ++P L+ E P + GC+F PRC A D+
Sbjct: 238 PSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDR 297
Query: 295 CWKIRPEPVEVEKNHWVACHL 315
C + P+ VEV+K+H+ AC L
Sbjct: 298 CKEEEPKMVEVDKDHYAACWL 318
>sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|72454|pir||QREBOF oligopeptide transport protein
oppF - Salmonella typhimurium >gi|47806|emb|CAA29043.1|
(X05491) Opp F (AA1-334) [Salmonella typhimurium]
Length = 334
Score = 212 bits (533), Expect = 6e-54
Identities = 118/296 (39%), Positives = 177/296 (58%), Gaps = 8/296 (2%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKL 81
++AVD VT + EGE + +VGESG GK+T + I+ L+K T GK+ + G+D+ D+
Sbjct: 37 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGKVAWLGKDLLGMKADEW 96
Query: 82 MNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVGLNP 141
++Q +FQDP AS NP + + RT+ +S + + V+ + VGL P
Sbjct: 97 REVR-SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQDVRDRVKAMMLKVGLLP 155
Query: 142 REILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNH 201
++ ++PH+ SGGQ QRI IARAL++EP L+I D+AVS LD S + V+NLL + +
Sbjct: 156 N-LINRYPHEFSGGQCQRIGIARALILEPKLIICDDAVSALDVSIQAQVVNLLQQLQREM 214
Query: 202 GTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESV----PD 257
G S+IFI HDLA+ +ISD++++MY G VE G ++V+ NPLHPYTK L+ +V PD
Sbjct: 215 GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMSAVPIPDPD 274
Query: 258 LNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVAC 313
L + + +E E + GC F RC +A +C + RP +E H V+C
Sbjct: 275 LERNKKIQLLEGEL-PSPINPPSGCVFRTRCPIAGPECAQTRP-VLEGSFRHAVSC 328
>gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (dppD-1) [Sulfolobus
solfataricus]
Length = 316
Score = 211 bits (532), Expect = 8e-54
Identities = 131/323 (40%), Positives = 186/323 (57%), Gaps = 18/323 (5%)
Query: 1 MLLEVQNLTKIFTS--GLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRL 58
MLLEV+NL F + G+ V+AVD V + +GEIV L GESGSGK+TIG I+RL
Sbjct: 5 MLLEVRNLKVYFYTKRGI-----VKAVDGVNLYLDKGEIVGLAGESGSGKSTIGYAIMRL 59
Query: 59 I----KPTSGKILFKGEDIWSFDKDKLM-NYYYKNVQAVFQDPFASFNPLYKVDRVFDLV 113
+ K SG+ILFKGE+I D++ NY +K + VFQ + F P++K+ D +
Sbjct: 60 VPFPGKIESGEILFKGENILKLDEEAFRKNYRWKKIAMVFQGSMSGFTPVFKIK---DQI 116
Query: 114 FRTFLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLL 173
+ + + +E ++ + V ++P ++ K+PH+LSGGQ QR IA AL + P +L
Sbjct: 117 IEVLRIHGWNGDYEERIKELFKMVNMDP-QLAEKYPHELSGGQKQRAFIAMALALNPEVL 175
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEW 233
IADE + LD + +LNLL + R S+IFITHDLAL ISD+ +Y G ++E
Sbjct: 176 IADEPTTALDVMVQEHILNLLKKLRKELNLSIIFITHDLALLSEISDRDYTLYAGKVMES 235
Query: 234 GDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKD 293
G +E +F P HPYT +L+ES+ L+ K KGI + L GC+F RC A+D
Sbjct: 236 GPSEVIFKKPRHPYTSLLIESIATLD-KDIIKGIPGAMPDLSSPPL-GCRFNTRCPFARD 293
Query: 294 KCWKIRPEPVEVEKNHWVACHLY 316
C+K P+ VAC LY
Sbjct: 294 ICFKEEPKMKTFSDGDEVACWLY 316
>emb|CAC05751.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 356
Score = 211 bits (532), Expect = 8e-54
Identities = 119/302 (39%), Positives = 180/302 (59%), Gaps = 10/302 (3%)
Query: 2 LLEVQNLTKIF--TSGLIGGYQV---RAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLIL 56
+LEV+ L K + TSG++ QV +AVD V F + GE + +VGESG GK+T+ K+++
Sbjct: 8 ILEVRGLVKHYPLTSGILFKKQVGAVKAVDGVDFRLARGETLGIVGESGCGKSTVAKMLV 67
Query: 57 RLIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
L +PT+G+I +KGEDI + + +N+Q VFQDP+ S NP V + +
Sbjct: 68 NLERPTAGEIRYKGEDITRLS-GRALKSVRRNIQMVFQDPYTSLNPRMTVGDIIGEAYDI 126
Query: 117 FLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
+ ++ V+ L+ VGLNP E + ++PHQ SGGQ QRI IAR L + P +++AD
Sbjct: 127 HPEVAPKGDRRRRVQDLLDVVGLNP-EYINRYPHQFSGGQRQRIGIARGLALRPEIIVAD 185
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
E VS LD S + V+NL+ +D S IFI HDL++ +ISD++ +MY G IVE G
Sbjct: 186 EPVSALDVSVQAQVINLMARLQDEFDLSYIFIAHDLSIVRHISDRVGVMYLGRIVETGRD 245
Query: 237 EKVFDNPLHPYTKMLLES--VPDLNVKWEFKGIEPEREEGKVWEL-KGCKFAPRCSLAKD 293
E+++D+P HPYT+ LL + VPD + + I + + GC+F RC A++
Sbjct: 246 EEIYDHPTHPYTQALLSAVPVPDPEAREHRERIILSGDVPSPTNIPSGCRFRTRCWKARE 305
Query: 294 KC 295
+C
Sbjct: 306 RC 307
>gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 362
Score = 211 bits (531), Expect = 1e-53
Identities = 118/326 (36%), Positives = 194/326 (59%), Gaps = 16/326 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M+LEV NL I+ G ++AV++V+F +++GEI+ ++GESGSGKTT+ ILR I+
Sbjct: 44 MILEVHNLNVIYDEG--NSRIIKAVNDVSFGVEKGEILGIIGESGSGKTTLISAILRAIR 101
Query: 61 PT----SGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
P SGK++F G DI+S D+ +K++ V Q + NP+ + +F +
Sbjct: 102 PPGKIISGKVIFNGMDIFSMTIDEFRKLLWKDISYVPQASQNALNPVLPISEIF---YHE 158
Query: 117 FLKNVSDVEKDELVRRA---LESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLL 173
+ + + +K ++ RA L+ VGL+P +L +P QLSGG QR++IA +LL+ P L+
Sbjct: 159 AISH-GEADKKRVIERASELLKLVGLDPARVLKMYPFQLSGGMKQRVMIALSLLLNPKLI 217
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEW 233
+ DE S LD + +L L+ G +++++THD+ I++++++MY+G ++E
Sbjct: 218 LMDEPTSALDMLNQELLLKLIKNINQEMGVTIVYVTHDILNIAQIANRLLVMYKGYVMEE 277
Query: 234 GDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKD 293
G TE++ +PL+PYT +L+ S+P L K E K I +E V + KGC F RCS A
Sbjct: 278 GKTEEIIKSPLNPYTSLLVSSIPSL--KGEVKVINVPLDEPLVSKEKGCPFLARCSKAFG 335
Query: 294 KCWKIRPEPVEVEKNHWVACHLYGGS 319
+C + PE + + + V CHLYG +
Sbjct: 336 RCKEELPE-IRLVYDRKVRCHLYGSN 360
>pir||G71211 probable oligopeptide transport ATP-binding protein appD -
Pyrococcus horikoshii >gi|3258403|dbj|BAA31086.1|
(AP000007) 322aa long hypothetical oligopeptide
transport ATP-binding protein appD [Pyrococcus
horikoshii]
Length = 322
Score = 211 bits (531), Expect = 1e-53
Identities = 120/324 (37%), Positives = 191/324 (58%), Gaps = 20/324 (6%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
+LEV+NL + + V+AVD+VTF +++GE++ L GESG GK++IG ++ + +P
Sbjct: 8 ILEVKNLKMYYFTSR---GPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 64
Query: 62 ----TSGKILFKGEDIWSFDKDKLMNYY-YKNVQAVFQDPFASFNPLYKV--DRVFDLVF 114
G I G +I +D L ++ + +FQ + NP+Y V + L++
Sbjct: 65 PGRIVGGSIKIDGREIVGLPEDVLRREIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 124
Query: 115 RTFLKNVSDVEKDELVRRA---LESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPS 171
+++++ + RA LE VGL+P EI+ ++PH+LSGG QR++IA ALL+EP
Sbjct: 125 H------KGMDREDALDRAMKYLELVGLDP-EIVYRYPHELSGGMKQRVVIAMALLLEPD 177
Query: 172 LLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIV 231
++IADE + LD + ++NL+ + G S+IFITHDL++ ISD++ +MY G +V
Sbjct: 178 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDRVAVMYAGKLV 237
Query: 232 EWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLA 291
E G +EK++ P HPYT+ LL ++P L+ E P + GC+F PRC A
Sbjct: 238 EIGPSEKIYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLINPPSGCRFHPRCPYA 297
Query: 292 KDKCWKIRPEPVEVEKNHWVACHL 315
DKC + P+ VEV+K+H+ AC L
Sbjct: 298 MDKCKEEEPKMVEVDKDHYAACWL 321
>pir||D72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981700|gb|AAD36228.1|AE001772_7 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 323
Score = 210 bits (530), Expect = 1e-53
Identities = 119/320 (37%), Positives = 182/320 (56%), Gaps = 8/320 (2%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI-- 59
+LE++N++ + +G V AV+NV+F +++GE + LVGESG GK+T+G I+RL+
Sbjct: 3 VLELKNVSVRYKTG---EKTVNAVENVSFHLEKGETLGLVGESGCGKSTLGFSIMRLLPK 59
Query: 60 -KPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL 118
G I +G DI S +++ V +FQDP S NP+ +++ F + T
Sbjct: 60 GTKIDGSIKIEGIDISSLSDEEMRQIRGSKVAMIFQDPMTSLNPILRIEDHFVEMILTHR 119
Query: 119 KNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEA 178
+S + EL +ALE VG+N R L +P Q SGG QR++IA ++++ P++LIADE
Sbjct: 120 PELSKEDARELAAKALEDVGIN-RNRLKDYPFQFSGGMRQRVMIALSIVLNPAVLIADEP 178
Query: 179 VSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEK 238
+ LD + ++ LL + H T++I ITHD+ L +D+I +MY G +VE E+
Sbjct: 179 TTSLDVIVQAQIMELLEKLTKEHRTAMILITHDMGLVAEAADRIGVMYAGHLVELASKER 238
Query: 239 VFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKI 298
+F NPLHPYT LL S+P+ +V + P +GC+FAPRC A CW+
Sbjct: 239 IFTNPLHPYTVGLLRSIPNTDVNDKELRYIPGSPPDLSNPPEGCRFAPRCEKAMKICWEK 298
Query: 299 RPEPVEVEKNHWVACHLYGG 318
P E++ V C LYGG
Sbjct: 299 EPPEFEIDGTR-VKCWLYGG 317
>pir||T34760 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402247|emb|CAA20183.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 496
Score = 210 bits (528), Expect = 2e-53
Identities = 126/324 (38%), Positives = 187/324 (56%), Gaps = 17/324 (5%)
Query: 2 LLEVQNLTKIFT--SGLIGGY--QVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILR 57
LL+V L K F GL+ VRAVD + F ++ GE + +VGESG GK+T+G+LI R
Sbjct: 39 LLKVTGLQKHFPIRKGLLQRQVGAVRAVDGIDFEVRSGETLGVVGESGCGKSTMGRLITR 98
Query: 58 LIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
L++PT+GK+ F+G+DI M ++VQ +FQDP++S NP + + + F+
Sbjct: 99 LLEPTAGKVEFQGKDITHLGVGG-MRPLRRDVQMIFQDPYSSLNPRHTIGTIVSAPFKLQ 157
Query: 118 -LKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
++ V+K+ V+R L VGLNP E ++PH+ SGGQ QRI IARAL + P L++AD
Sbjct: 158 GVQPEGGVKKE--VQRLLSVVGLNP-EHYNRYPHEFSGGQRQRIGIARALALNPRLVVAD 214
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
E VS LD S + V+NLL + + G + + I HDL++ ++SD+I +MY G I+E D
Sbjct: 215 EPVSALDVSIQAQVVNLLDDLQQELGLTYVIIAHDLSVVRHVSDRIAVMYLGKIMELADR 274
Query: 237 EKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPER------EEGKVWELKGCKFAPRCSL 290
+ ++ P+HPYTK L+ +VP + +G + ER + GC+F RC
Sbjct: 275 DLLYKTPMHPYTKALMSAVPIPDP--ARRGAKSERILLKGDVPSPIAPPSGCRFHTRCWK 332
Query: 291 AKDKCWKIRPEPVEVEKNHWVACH 314
A C P E+ VACH
Sbjct: 333 ATQVCTTTEPPLKELRPGQQVACH 356
>emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD) [Thermoplasma
acidophilum]
Length = 321
Score = 209 bits (527), Expect = 3e-53
Identities = 120/335 (35%), Positives = 196/335 (57%), Gaps = 34/335 (10%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
MLL +++L ++ + + G Y+V +D++ I +GE+VSLVGES SGK+T+G++I R++
Sbjct: 1 MLLSIKHLN-VWYNTVAGKYKV--IDDLNLDIDQGELVSLVGESASGKSTLGQVISRMLP 57
Query: 61 P---TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVF--DLVFR 115
P TSG+++ G D+ + ++ V +FQ+P S NP+ +++ L R
Sbjct: 58 PVGITSGEVVLDGVDVLKLSEKEMTKIRGTTVFMIFQNPLNSLNPVKRIEEQLMEALAIR 117
Query: 116 TFLKNVSDV--EKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSL 172
N+ E + V +ALES+ L +P +IL ++PH+LSGGQ+QR++I ALL+ P L
Sbjct: 118 NSRMNIQMTFEEARKEVIKALESLRLPDPEKILIRYPHELSGGQVQRVVICMALLLRPKL 177
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
LIADE + LD + + V+ LL + + ++IFITHD+ L Y +SD++++ Y G ++E
Sbjct: 178 LIADEPTTALDVTIQAQVVKLLKDLNRDTKMTIIFITHDVGLAYVLSDRMLVFYAGRVME 237
Query: 233 WGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWEL-----------KG 281
G T ++ NPLHPYT LL S+P + GK++ + KG
Sbjct: 238 QGQTVEIVKNPLHPYTSGLLASIP-----------SSPKHSGKLYSIPGYPPSYLSLPKG 286
Query: 282 CKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACHLY 316
CKFAPRC A ++C++ P ++ + N + C LY
Sbjct: 287 CKFAPRCRFAFERCFEEEPSYIK-KDNRLIRCWLY 320
>sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|7442535|pir||B64872 oligopeptide transport
ATP-binding protein oppF - Escherichia coli
>gi|1742036|dbj|BAA14779.1| (D90763) Oligopeptide
transport ATP-binding protein OppF. [Escherichia coli]
>gi|1787500|gb|AAC74329.1| (AE000223) homolog of
Salmonella ATP-binding protein of oligopeptide ABC
transport system [Escherichia coli K12]
Length = 334
Score = 209 bits (527), Expect = 3e-53
Identities = 118/296 (39%), Positives = 174/296 (57%), Gaps = 8/296 (2%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKL 81
++AVD VT + EGE + +VGESG GK+T + I+ L+K T G + + G+++ D+
Sbjct: 37 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHVAWLGKELLGMKPDE- 95
Query: 82 MNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVGLNP 141
++Q +FQDP AS NP + + RT+ +S E E V+ + VGL P
Sbjct: 96 WRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLP 155
Query: 142 REILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNH 201
++ ++PH+ SGGQ QRI IARAL++EP L+I DE VS LD S + V+NLL + +
Sbjct: 156 N-LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM 214
Query: 202 GTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESV----PD 257
G S+IFI HDLA+ +ISD++++MY G VE G ++V+ NPLHPYT+ L+ +V PD
Sbjct: 215 GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTRALMSAVPIPDPD 274
Query: 258 LNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVAC 313
L + +E E + GC F RC +A +C K RP +E H V+C
Sbjct: 275 LEKNKTIQLLEGEL-PSPINPPSGCVFRTRCPIAGPECAKTRP-VLEGSFRHSVSC 328
>pir||H72215 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982327|gb|AAD36814.1|AE001813_6 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 324
Score = 208 bits (525), Expect = 5e-53
Identities = 125/327 (38%), Positives = 183/327 (55%), Gaps = 19/327 (5%)
Query: 2 LLEVQNLTKIF--TSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
LL V NL F G+ V+AVD +++ + +GE + +VGESGSGK+ +LRLI
Sbjct: 4 LLNVNNLKVEFHRVEGI-----VKAVDGISYKLNKGESLGIVGESGSGKSVSVLSLLRLI 58
Query: 60 ----KPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVD-RVFD-LV 113
+ G+ +F G+D+ +K++L N K++ +FQ+P S NP+ +V +V + ++
Sbjct: 59 NRNGRIVDGEAIFLGKDLLKLNKEELRNIRGKDISIIFQNPMTSLNPIIRVGIQVMEPII 118
Query: 114 FRTFLKNVSDVEKDELVRRALESVGL--NPREILGKFPHQLSGGQLQRILIARALLVEPS 171
+ +KN E E LE VG+ +P+ L +P Q SGG QR++IA AL P
Sbjct: 119 WHRLMKNE---EARERAIELLERVGIPESPKRFLN-YPFQFSGGMRQRVMIAMALACHPK 174
Query: 172 LLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIV 231
LLIADE + LD + + ++ LL E ++ +G SVIFITHDL++ D+II MY G IV
Sbjct: 175 LLIADEPTTALDVTIQAQIMELLQELKEEYGMSVIFITHDLSVATNFCDRIITMYAGKIV 234
Query: 232 EWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLA 291
E E++ PLHPYTK LL S ++ + + P GCKF PRCS A
Sbjct: 235 EEAPVEEILKTPLHPYTKGLLNSTLEIGSRGKKLVPIPGNPPNPTKHPSGCKFHPRCSFA 294
Query: 292 KDKCWKIRPEPVEVEKNHWVACHLYGG 318
+ C + P V + +NH VACHL G
Sbjct: 295 MEICQREEPPLVNISENHRVACHLIKG 321
>pir||A72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981009|gb|AAD35583.1|AE001726_17 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 333
Score = 208 bits (524), Expect = 7e-53
Identities = 123/321 (38%), Positives = 188/321 (58%), Gaps = 17/321 (5%)
Query: 2 LLEVQNLTKIF--TSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
LLEV+NL+ F G+ V+AV++V+FS+ E++ +VGE+GSGK+ K I+RLI
Sbjct: 7 LLEVKNLSTWFYMEEGI-----VKAVNDVSFSLNSNEVLGIVGETGSGKSVTVKSIMRLI 61
Query: 60 KP----TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFR 115
KP SG+I++KG+DI + ++ K + +FQDP S NPLY + D +
Sbjct: 62 KPPGKIVSGEIIYKGQDILKIPEKEMHRIRGKEIAMIFQDPMMSLNPLYTIG---DQLME 118
Query: 116 TFLKNVSDVEKDELVRRA--LESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSL 172
T ++ ++ +R LE VG+ P + + +P + SGG QR++IA AL PS+
Sbjct: 119 TIRYHLGYDKRRAYLRAVEMLELVGIPEPEKRMNNYPFEFSGGMRQRVVIAIALSCNPSV 178
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
LIADE + LD + + +L L+ E + T +IFITHDL + ++D+I++MY G VE
Sbjct: 179 LIADEPTTALDVTIQAQILELMKELQKEFKTGLIFITHDLGVIASMADRIMVMYGGRQVE 238
Query: 233 WGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAK 292
G ++++F +P HPYTKMLL SVP ++ + E P + V C F PRC
Sbjct: 239 IGTSDQIFYSPRHPYTKMLLRSVPRVDKRLEKLESIPGQPPRMVDIPPVCPFLPRCPRRV 298
Query: 293 DKCWKIRPEPVEVEKNHWVAC 313
++C K PE E+E+NH+V C
Sbjct: 299 ERCLKELPELSEIEENHYVRC 319
>dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 332
Score = 208 bits (523), Expect = 9e-53
Identities = 125/324 (38%), Positives = 189/324 (57%), Gaps = 16/324 (4%)
Query: 1 MLLEVQNLTKIF--TSGLIGGYQ--VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLIL 56
+LLE + LTK F + G + +RAVD V +I GE + +VGESG GK+T+G+L++
Sbjct: 4 VLLEAKGLTKHFDVSEGFFKRKKAVLRAVDGVDLTIYAGETLGIVGESGCGKSTLGQLLM 63
Query: 57 RLIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
RL++PT G + F G D + K + + ++Q +FQDPF+S NP V + +T
Sbjct: 64 RLLEPTRGTLSFAGSDFLAL-KGEALRQKRSDIQIIFQDPFSSLNPRMTVREIIGEPLKT 122
Query: 117 F-LKNVSDVEK--DELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLL 173
L +D+ K DEL +++VGL+ R ++PH+ SGGQ QRI IARA+ ++P L+
Sbjct: 123 HRLAKGNDLIKRVDEL----MDAVGLD-RSYAKRYPHEFSGGQRQRIGIARAIALKPKLI 177
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEW 233
I DE VS LD S + +LNL+ + + +FI H L +ISD++ +MY G +VE
Sbjct: 178 ICDEPVSALDVSIQAQILNLMVRLQKEFQLTFLFIAHGLPAVKHISDRMAVMYLGKVVEL 237
Query: 234 GDTEKVFDNPLHPYTKMLLESV--PDLNVKWEFKGIEPERE-EGKVWELKGCKFAPRCSL 290
+ +F P+HPY++ L+++V PD V+ + K + E + V GC+F PRC
Sbjct: 238 ASKDALFAQPMHPYSEGLIQAVPIPDPTVRNDKKWVTLEGDLPSPVHPPSGCRFHPRCPY 297
Query: 291 AKDKCWKIRPEPVEVEKNHWVACH 314
A+DKC P E E H+VACH
Sbjct: 298 AQDKCTVQEPALTEKEPGHFVACH 321
>pir||F70141 probable oligopeptide transport ATP-binding protein oppF - Lyme
disease spirochete >gi|2281463|gb|AAC46288.1| (AF000366)
oligopeptide permease homolog F [Borrelia burgdorferi]
>gi|2688242|gb|AAC66721.1| (AE001140) oligopeptide ABC
transporter, ATP-binding protein (oppF) [Borrelia
burgdorferi]
Length = 323
Score = 207 bits (521), Expect = 2e-52
Identities = 124/325 (38%), Positives = 191/325 (58%), Gaps = 22/325 (6%)
Query: 1 MLLEVQNLTKIFTSG-----LIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLI 55
++L+V+NL + FT+G +V AV+NV+F +++ + + LVGESG GK+T + I
Sbjct: 7 IILKVENLMQTFTTGEDFLFWKNKQKVNAVNNVSFEVEKNKTLGLVGESGCGKSTTLRSI 66
Query: 56 LRLIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFR 115
++L PTSG I F G++I K +L+ K++Q VFQDP S +P + +
Sbjct: 67 MQLYTPTSGNIYFNGKNITKLSKKELLKTK-KDMQMVFQDPHTSLDPRMTIKEIIAEPLE 125
Query: 116 TFLKNV----SDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPS 171
+ +N + E ++ V + VGL+ + +L ++PH+ SGGQ QRI IARAL + P
Sbjct: 126 IYNENKILPKTKQEIEQRVNELTDIVGLH-KSMLTRYPHEFSGGQRQRIGIARALALNPK 184
Query: 172 LLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIV 231
LL+ DEAVS LD S R +LNLL + S +FI+HDLA+ Y+SDKI +MY G I+
Sbjct: 185 LLLLDEAVSALDVSIRAQILNLLKALQKEFNLSYLFISHDLAVVKYMSDKIAVMYLGVIL 244
Query: 232 EWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLA 291
E E +F NP+HPYTKML+ S+P++N PE+ + K +L A +
Sbjct: 245 ELAPRETLFSNPIHPYTKMLIASIPEIN---------PEKRKNKNIKLDEQTLANIRKIH 295
Query: 292 KDKCWKIRPEPVEVEKNHWVACHLY 316
++ P+ EVEK+H+V+ +L+
Sbjct: 296 LST--QVHPKLEEVEKDHFVSKYLF 318
>pir||C72452 probable peptide transport ATP-binding protein APE2263 - Aeropyrum
pernix (strain K1) >gi|5105964|dbj|BAA81275.1|
(AP000064) 347aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 207 bits (521), Expect = 2e-52
Identities = 123/301 (40%), Positives = 178/301 (58%), Gaps = 18/301 (5%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWS--FDKD 79
VRAVD V I+EGE++++VGESG GKTT+GK I+ + +P+ G I ++GE + +D
Sbjct: 41 VRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARD 100
Query: 80 KLMNYYYKNVQAVFQDPFASFNPLYKV-DRVFD-LVFRTFLKNVSDVEKDELVRRA---L 134
+ + + +Q VFQDP+ S +PL V D+V + LV + +E RRA L
Sbjct: 101 RRLR---RKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARG------EEARRRAVEML 151
Query: 135 ESVGLNP-REILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNL 193
E+VGL P RE + PHQLSGGQ QR+ IAR L++EP +++ADE VSM+D S R +L+L
Sbjct: 152 ETVGLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDL 211
Query: 194 LGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLE 253
+ ++ G +++ ITHD+A+ ++D+I +MY G IVE G+ V +NP HPYT L+
Sbjct: 212 IMDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIENPRHPYTAALVT 271
Query: 254 SVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVAC 313
S P ++ + + V GC+F PRC LA C P VE E AC
Sbjct: 272 STPSISRRRPPRFPISGEVPSAVAIPPGCRFHPRCPLASSLCRSREPALVE-EGGRLYAC 330
Query: 314 H 314
H
Sbjct: 331 H 331
>pir||A72452 probable peptide transport ATP-binding protein APE2261 - Aeropyrum
pernix (strain K1) >gi|5105962|dbj|BAA81273.1|
(AP000064) 320aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 320
Score = 206 bits (519), Expect = 3e-52
Identities = 125/321 (38%), Positives = 188/321 (57%), Gaps = 19/321 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
+L++Q+L K+ L G VRAVD V+ S+ +GE +S+VGESGSGK+T+ I RLI P
Sbjct: 7 VLDIQDL-KVHYYTLTG--IVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMP 63
Query: 62 ----TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKV-DRVFDLVFRT 116
G+IL+ G D+ S ++L Y + + VFQDP A +P V ++ + +
Sbjct: 64 PGRIVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEH 123
Query: 117 FLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
L + S E + + ALE VG+ PR+ +PHQLSGGQ QR+ IA A+ +EP +LIAD
Sbjct: 124 GLAS-SGSEAESMAGDALELVGI-PRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIAD 181
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
E + LD + +++L+ + ++ G +V+ +THD+ L SD+I +MY G +VE G
Sbjct: 182 EPTTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPA 241
Query: 237 EKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELK----GCKFAPRCSLAK 292
E V NP+HPYT+ML++SVPD WE + ++P G +L+ GC+F PRC L +
Sbjct: 242 EDVVSNPIHPYTEMLIKSVPD---PWEDREVKP--IPGSPPDLRNPPPGCRFHPRCPLRQ 296
Query: 293 DKCWKIRPEPVEVEKNHWVAC 313
C RP V+ +C
Sbjct: 297 PLCTNTRPSLRMVDGGRGHSC 317
>pir||B72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981604|gb|AAD36138.1|AE001766_4 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 341
Score = 206 bits (518), Expect = 4e-52
Identities = 131/334 (39%), Positives = 192/334 (57%), Gaps = 29/334 (8%)
Query: 2 LLEVQNLTKIFTSGLIG------GYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLI 55
LLEV+NL K F G GY ++AVD ++F I+EGE + LVGESG GKTT KLI
Sbjct: 3 LLEVKNLKKYFPIIKRGFRRKVVGY-LKAVDGISFHIEEGETLGLVGESGCGKTTTAKLI 61
Query: 56 LRLIKPTSGKILFK--GE--DIWSFDKDKLMNYYYKN-VQAVFQDPFASFNPLYKVDRVF 110
+R I+PT G+I+ GE DI + +L + +Q +FQDP++S NP V +
Sbjct: 62 MRGIEPTEGEIVLNMDGEKVDITKLSEKELREKGVRRFLQMIFQDPYSSLNPRMTVRDII 121
Query: 111 --DLVFRTFLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLV 168
LV +K ++ D +V L +VGL P E + ++PH SGGQ QRI IARA+ +
Sbjct: 122 AEPLVVNGVIKGKEEI--DAIVSDLLRAVGLRP-EYMQRYPHAFSGGQRQRIAIARAIAL 178
Query: 169 EPSLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRG 228
+P L++ DE S LD S + ++NLL + + + + +FI+HDL + +I++++ +MY G
Sbjct: 179 KPKLVLCDEPTSALDVSVQAQIINLLKDLQKEYNLTYLFISHDLGVVEHITNRVAVMYVG 238
Query: 229 SIVEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFK-----GIEPEREEGKVWELKGCK 283
IVE +TE++F +P HPYT+ LL +VP + K + K G P+ GC
Sbjct: 239 RIVELAETEELFSSPKHPYTEALLSAVPKPDPKRKRKKAQLTGEVPDPSNPP----SGCY 294
Query: 284 FAPRCSLAKDKCWKIRPEPVEV---EKNHWVACH 314
F PRC AK C ++ P+ V + H VACH
Sbjct: 295 FHPRCPYAKAICKEVYPDLRNVGTDQNPHLVACH 328
>pir||C75142 oligopeptide transport ATP-binding protein appf PAB0630 -
Pyrococcus abyssi (strain Orsay)
>gi|5458363|emb|CAB49852.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 206 bits (518), Expect = 4e-52
Identities = 126/324 (38%), Positives = 191/324 (58%), Gaps = 13/324 (4%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTT-IGKLILRL-- 58
LL+V+NL + + + GY VRAVD V+F + EGE+ + GESG GK+T + LILR
Sbjct: 3 LLDVRNLRVYYRTPV--GY-VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPP 59
Query: 59 IKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKV-DRVFDLVFRTF 117
++ G +FKG D+ S +D+L Y + + Q + NP ++ D V+DL
Sbjct: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
Query: 118 LKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
+ +VE EL+R L V L+PR + +P +LSGG QR + + L+ P LLIADE
Sbjct: 120 YADRREVE--ELLRERLSMVKLSPR-VADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
Query: 178 AVSMLDASTRIDVLNLLGEF-RDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
S LD +T+ V+ LL F ++ S+IF+THDLAL I+D++++MY G +VE G
Sbjct: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
Query: 237 EKVFDNPLHPYTKMLLESVPDLNVKWEFKGIE--PEREEGKVWELKGCKFAPRCSLAKDK 294
E+V +NP HPYT++LL S+P + V ++ + + P + KGC+F RC A +
Sbjct: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMED 296
Query: 295 CWKIRPEPVEVEKNHWVACHLYGG 318
C + P+ V+V ++H+ ACHL GG
Sbjct: 297 CRDVEPKLVKVGRDHYAACHLLGG 320
>pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd) PAB1346 -
Pyrococcus abyssi (strain Orsay)
>gi|5458956|emb|CAB50443.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppD) [Pyrococcus
abyssi]
Length = 322
Score = 206 bits (518), Expect = 4e-52
Identities = 126/324 (38%), Positives = 191/324 (58%), Gaps = 13/324 (4%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTT-IGKLILRL-- 58
LL+V+NL + + + GY VRAVD V+F + EGE+ + GESG GK+T + LILR
Sbjct: 3 LLDVRNLRVYYRTPV--GY-VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPP 59
Query: 59 IKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKV-DRVFDLVFRTF 117
++ G +FKG D+ S +D+L Y + + Q + NP ++ D V+DL
Sbjct: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
Query: 118 LKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
+ +VE EL+R L V L+PR + +P +LSGG QR + + L+ P LLIADE
Sbjct: 120 YADRREVE--ELLRERLSMVKLSPR-VADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
Query: 178 AVSMLDASTRIDVLNLLGEF-RDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
S LD +T+ V+ LL F ++ S+IF+THDLAL I+D++++MY G +VE G
Sbjct: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
Query: 237 EKVFDNPLHPYTKMLLESVPDLNVKWEFKGIE--PEREEGKVWELKGCKFAPRCSLAKDK 294
E+V +NP HPYT++LL S+P + V ++ + + P + +GC+F RC A +
Sbjct: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPRGCRFYTRCPFAMEH 296
Query: 295 CWKIRPEPVEVEKNHWVACHLYGG 318
C ++ P+ V+V K H+ ACHL GG
Sbjct: 297 CPEVEPKLVKVGKEHYAACHLLGG 320
>gi|10955083 agaD [Agrobacterium tumefaciens] >gi|11346288|pir||T45532 agaD
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665708|gb|AAB88468.1| (AF242881) agaD
[Agrobacterium tumefaciens]
Length = 569
Score = 204 bits (514), Expect = 1e-51
Identities = 114/260 (43%), Positives = 166/260 (63%), Gaps = 8/260 (3%)
Query: 2 LLEVQNLTKIF---TSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRL 58
LL ++NLTK F S L + RAVD+V+ I V LVGESG GK+T+ +L++RL
Sbjct: 304 LLTIRNLTKTFWLRESPLAPPKEFRAVDDVSLDIPARSTVGLVGESGCGKSTLSRLVMRL 363
Query: 59 IKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL 118
++P SG I F G D+ S D+++L + +N VFQ+P+ S NP V DL+
Sbjct: 364 MEPNSGTIEFDGIDLTSLDRERL-RHARQNFALVFQNPYGSLNPRQTVT---DLIAAPVD 419
Query: 119 KNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEA 178
+ +++ +V + L++VGL PR+ + ++PH+ SGGQ QRI+IARAL + P LLI DEA
Sbjct: 420 IHAKGRDREAIVAKLLDAVGL-PRDAMRRYPHEFSGGQRQRIVIARALALRPKLLICDEA 478
Query: 179 VSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEK 238
VS LD S + VLNLL + +D + +FITHD+++ +ISD I +M +G IVE G E+
Sbjct: 479 VSALDVSVQAQVLNLLQDLQDEFDLTYLFITHDMSVVRHISDTIAVMQKGRIVETGTAEE 538
Query: 239 VFDNPLHPYTKMLLESVPDL 258
VFD+P YT+ LL +VP +
Sbjct: 539 VFDHPKDEYTRTLLRAVPKI 558
Score = 162 bits (406), Expect = 5e-39
Identities = 95/266 (35%), Positives = 154/266 (57%), Gaps = 15/266 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
+L++ NLT F +G G + AV++V+ S+ GEI+ LVGESGSGKT + + L+ P
Sbjct: 6 VLKIDNLTVAFKTG--DGLRT-AVNSVSLSLHSGEILGLVGESGSGKTILSLAAMGLLPP 62
Query: 62 TS----GKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
+ G + F GED+ + D L K + +FQDP AS +P++ + +
Sbjct: 63 NAVVAGGTVKFFGEDLLTARPDVLRKLRGKRIAMIFQDPMASLDPVFTCG---SQIVESI 119
Query: 118 LKNVSDVEKDELVRRALE---SVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLL 173
L + V + +RAL+ VG+ +P +G +PH+LSGGQ QR++IA A+ +P ++
Sbjct: 120 LLH-ERVPRRNAHQRALDLLTKVGIVDPERCMGSYPHELSGGQCQRVMIAMAVACKPDVI 178
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEW 233
IADE + LD + + VLNLL G +++ ITHDL + Y ++D++ ++YRG ++E
Sbjct: 179 IADEPTTALDVTVQKQVLNLLQNLNQEIGAAILLITHDLGVIYEVADRVAVIYRGDMMEE 238
Query: 234 GDTEKVFDNPLHPYTKMLLESVPDLN 259
T +F P YTK L+ S+P ++
Sbjct: 239 AKTTDLFAAPKSAYTKALIASMPSVS 264
>pir||D71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256910|dbj|BAA29593.1|
(AP000002) 324aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 324
Score = 204 bits (514), Expect = 1e-51
Identities = 128/326 (39%), Positives = 192/326 (58%), Gaps = 15/326 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTT-IGKLILRLI 59
+LL V+NL +I+ S G V+AVD V+F +K+GE+ + GESG GK+T + LILR
Sbjct: 2 ILLRVRNL-RIYYSTPRGF--VKAVDGVSFEVKKGEVFGIAGESGCGKSTLVHSLILRKP 58
Query: 60 KPT--SGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKV-DRVFDLVFRT 116
T GK +FKG+D+ +++ YK + + Q + NP K+ D V+DL
Sbjct: 59 PMTHKGGKAIFKGKDLMKLSREEARKIQYKELSIIPQYAMNALNPTKKIKDIVWDLAREH 118
Query: 117 FLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
+++ +VEK L++ L V L+P+ + +P +LSGG QR + + L+ P LLIAD
Sbjct: 119 GMQDKKEVEK--LLKERLSMVKLSPK-VAEMYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGT-SVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
E S LD +T+ V+ LL F + S+IF+THDLAL I+D+++IMY G +VE G
Sbjct: 176 EVTSALDVTTQRVVIELLHHFMEEGIVKSIIFVTHDLALLRQIADRVMIMYAGKVVEIGS 235
Query: 236 TEKVFDNPLHPYTKMLLESVPDLNVKWE---FKGIEPEREEGKVWELKGCKFAPRCSLAK 292
E+V ++P HPYT++LL S+P + V ++ +GI P + +GC+F RC A
Sbjct: 236 MEEVLESPAHPYTQLLLNSLPRMGVHYKRERLRGI-PGYPISLLNPPEGCRFYTRCPYAM 294
Query: 293 DKCWKIRPEPVEVEKNHWVACHLYGG 318
C ++ PE VEV H+ ACHL GG
Sbjct: 295 QVCREVEPELVEVSPGHYAACHLLGG 320
>gb|AAG22038.1|AF305387_5 (AF305387) OppF [Bacillus thuringiensis]
Length = 311
Score = 204 bits (513), Expect = 1e-51
Identities = 110/255 (43%), Positives = 160/255 (62%), Gaps = 4/255 (1%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
L+EV+N+ + F + G V+AV++++F I GE LVGESG GK+T G+ I+RL
Sbjct: 8 LIEVKNVKQHFD---VSGGVVKAVNDISFDIYRGETFGLVGESGCGKSTTGRTIIRLYDA 64
Query: 62 TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNV 121
T+G++LF GE++ + + + +Q +FQDP+AS NP V +
Sbjct: 65 TAGEVLFDGENVHGKKSRAELKKFNRKMQMIFQDPYASLNPRMTVGDIIAEGIDIHGLAK 124
Query: 122 SDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSM 181
S E+ + V L +VGLN +E +FPH+ SGGQ QRI IARAL VEP +IADE +S
Sbjct: 125 SKKERMDRVHELLNTVGLN-KEHANRFPHEFSGGQRQRIGIARALAVEPEFIIADEPISA 183
Query: 182 LDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFD 241
LD S + V+NLL + + G + +FI HDL++ YISD+I +MYRG IVE +E+++
Sbjct: 184 LDVSIQAQVVNLLKKLQKEKGLTYLFIAHDLSMVKYISDRIGVMYRGQIVELTTSEELYA 243
Query: 242 NPLHPYTKMLLESVP 256
NP+HPYTK LL ++P
Sbjct: 244 NPVHPYTKSLLSAIP 258
>gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dppD-3) [Sulfolobus
solfataricus]
Length = 324
Score = 203 bits (511), Expect = 2e-51
Identities = 121/325 (37%), Positives = 191/325 (58%), Gaps = 15/325 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++L+++NL ++ + LI V+ + +V +++GEIV +VGESGSGK+T+G I R++
Sbjct: 5 VVLQIRNLN-VYYNTLISW--VKVLSDVNLDVEKGEIVGVVGESGSGKSTLGHAISRILP 61
Query: 61 PTS---GKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKV-DRVFDLVFRT 116
P + G I+ G ++ +L Y V +FQ+P S NP+ KV ++ + V
Sbjct: 62 PNARIQGDIIVDGVNLAKLKDSELQKYRGTWVFMIFQNPLNSLNPVKKVGSQLLEAVKIR 121
Query: 117 FLKNVSDVEKDELVRRALESVG----LNPREILGKFPHQLSGGQLQRILIARALLVEPSL 172
+ + E++ L+R +E + +P I+ ++PHQLSGGQ+QRI+I+ ALL++P L
Sbjct: 122 YQREGKKAEEESLMRDVIEVLKDLRLPDPYSIIDRYPHQLSGGQVQRIVISMALLLKPKL 181
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
LIADE S LD + + V+NL + TS++FITHD++L Y +SD+I++MY G I+E
Sbjct: 182 LIADEPTSALDVTIQAQVVNLFKQLNKEINTSILFITHDISLAYVVSDRIVVMYAGRIME 241
Query: 233 WGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAK 292
G E+V +P+HPYT+ L+ S+P + + I P GCKF+ RCS
Sbjct: 242 DGKVEEVLKSPMHPYTQGLVASIPSGDKNQKLTAI-PGNPPSFFALPTGCKFSNRCSKVF 300
Query: 293 DKCWKIRPEPVEVEKN-HWVACHLY 316
D C K EP +EKN + C LY
Sbjct: 301 DICRK--KEPSIIEKNGRKIRCWLY 323
>sp|P24137|OPPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|98478|pir||E38447 oligopeptide transport ATP-binding
protein oppF - Bacillus subtilis
>gi|143608|gb|AAA62692.1| (M57689) sporulation protein
[Bacillus subtilis]
Length = 308
Score = 203 bits (510), Expect = 3e-51
Identities = 120/313 (38%), Positives = 184/313 (58%), Gaps = 22/313 (7%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LLE+++L + F + V+AVD+++F I +GE + LVGESG GK+T G+ I+RL +
Sbjct: 8 LLEIKHLKQHFVTPR---GTVKAVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYEA 64
Query: 62 TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNV 121
T G++LF GE++ K + + + +Q +FQDP+AS NP V +
Sbjct: 65 TDGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNPRMTVADIIAEGLDIHKLAK 124
Query: 122 SDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSM 181
+ E+ + V LE+VGLN +E ++PH+ SGGQ QRI IARAL V+P +IADE +S
Sbjct: 125 TKKERMQRVHELLETVGLN-KEHANRYPHEFSGGQRQRIGIARALAVDPEFIIADEPISA 183
Query: 182 LDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFD 241
LD S + V+NL+ E + G + +FI HDL++ YISD+I +MY G +VE +++++
Sbjct: 184 LDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVELAPADELYE 243
Query: 242 NPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKD-KCWKIRP 300
NPLHPYTK LL ++P +P+ E +V + K+ P KD + + R
Sbjct: 244 NPLHPYTKSLLSAIP---------LPDPDYERNRVRQ----KYDPSVHQLKDGETMEFR- 289
Query: 301 EPVEVEKNHWVAC 313
EV+ H+V C
Sbjct: 290 ---EVKPGHFVMC 299
>gb|AAA62693.1| (M57689) sporulation protein [Bacillus subtilis]
>gi|2633501|emb|CAB13004.1| (Z99110) oligopeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 305
Score = 203 bits (510), Expect = 3e-51
Identities = 120/313 (38%), Positives = 184/313 (58%), Gaps = 22/313 (7%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LLE+++L + F + V+AVD+++F I +GE + LVGESG GK+T G+ I+RL +
Sbjct: 5 LLEIKHLKQHFVTPR---GTVKAVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYEA 61
Query: 62 TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNV 121
T G++LF GE++ K + + + +Q +FQDP+AS NP V +
Sbjct: 62 TDGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNPRMTVADIIAEGLDIHKLAK 121
Query: 122 SDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSM 181
+ E+ + V LE+VGLN +E ++PH+ SGGQ QRI IARAL V+P +IADE +S
Sbjct: 122 TKKERMQRVHELLETVGLN-KEHANRYPHEFSGGQRQRIGIARALAVDPEFIIADEPISA 180
Query: 182 LDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFD 241
LD S + V+NL+ E + G + +FI HDL++ YISD+I +MY G +VE +++++
Sbjct: 181 LDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVELAPADELYE 240
Query: 242 NPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKD-KCWKIRP 300
NPLHPYTK LL ++P +P+ E +V + K+ P KD + + R
Sbjct: 241 NPLHPYTKSLLSAIP---------LPDPDYERNRVRQ----KYDPSVHQLKDGETMEFR- 286
Query: 301 EPVEVEKNHWVAC 313
EV+ H+V C
Sbjct: 287 ---EVKPGHFVMC 296
>emb|CAA39791.1| (X56347) OppF [Bacillus subtilis]
Length = 307
Score = 201 bits (507), Expect = 7e-51
Identities = 107/255 (41%), Positives = 162/255 (62%), Gaps = 4/255 (1%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LLE+++L + F + V+AVD+++F I +GE + LVGESG GK+T G+ I+RL +
Sbjct: 8 LLEIKHLKQHFVTPR---GTVKAVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYEA 64
Query: 62 TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNV 121
T G++LF GE++ K + + + +Q +FQDP+AS NP V +
Sbjct: 65 TDGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNPRMTVADIIAEGLDIHKLAK 124
Query: 122 SDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSM 181
+ E+ + V LE+VGLN +E ++PH+ SGGQ QRI IARAL V+P +IADE +S
Sbjct: 125 TKKERMQRVHELLETVGLN-KEHANRYPHEFSGGQRQRIGIARALAVDPEFIIADEPISA 183
Query: 182 LDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFD 241
LD S + V+NL+ E + G + +FI HDL++ YISD+I +MY G +VE +++++
Sbjct: 184 LDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVELAPADELYE 243
Query: 242 NPLHPYTKMLLESVP 256
NPLHPYTK LL ++P
Sbjct: 244 NPLHPYTKSLLSAIP 258
>pir||G75202 dipeptide abc transporter, dipeptide-binding protein PAB0095 -
Pyrococcus abyssi (strain Orsay)
>gi|5457579|emb|CAB49070.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 345
Score = 200 bits (504), Expect = 2e-50
Identities = 117/296 (39%), Positives = 165/296 (55%), Gaps = 5/296 (1%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKL 81
V AVD ++ +I++GE L GESG GK+T G+L+LRLI+PT G I F G DI DKD+
Sbjct: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLDKDE- 88
Query: 82 MNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVGLNP 141
M + + VFQDP +S NP + S+ EK + + LE+VGL
Sbjct: 89 MRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLG- 147
Query: 142 REILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNH 201
E L ++PH+LSGGQLQR+ IARA++ P ++ DE S LD S + +LNLL +
Sbjct: 148 EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKF 207
Query: 202 GTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPL-HPYTKMLLESVPDL-- 258
+ +FI+HD+++ Y+SD+I IMY G +VE + + HPYT LL S P L
Sbjct: 208 NLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHP 267
Query: 259 NVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACH 314
+ + K I + GC+F RC KC P VE++K+H+VACH
Sbjct: 268 SKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACH 323
>emb|CAC12447.1| (AL445067) probable dipeptide transport system, ATP-binding protein
dppF [Thermoplasma acidophilum]
Length = 248
Score = 200 bits (504), Expect = 2e-50
Identities = 107/247 (43%), Positives = 159/247 (64%), Gaps = 9/247 (3%)
Query: 14 SGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDI 73
+GL+G + A++NV ++ + EI+ LVG SGSGK+T+ ++++ L +P++GK++F+G D+
Sbjct: 3 TGLMGTQDITALNNVNITLYQKEILGLVGASGSGKSTLARVLVLLYRPSTGKVVFEGRDV 62
Query: 74 WSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT--FLKNVSDVEKDELVR 131
++ KL Y +VQ VFQDP+AS +P + + R + N+ DE +
Sbjct: 63 TNYRGMKLREYR-SDVQMVFQDPYASLDPYHTISWHIRRPLRIHHYRGNI-----DERID 116
Query: 132 RALESVGLNPREIL-GKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDV 190
LE V L+P KFPHQ+SGGQ QR+ +ARAL +EP +LIADE VSMLD S RID+
Sbjct: 117 ELLEMVKLDPPSYFRDKFPHQISGGQRQRVYLARALALEPKVLIADEPVSMLDVSLRIDI 176
Query: 191 LNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKM 250
L LL R++ G S+I+ITHDL I+D+I +++ G IVE G T+ V NP YT+
Sbjct: 177 LELLSRIREDLGISIIYITHDLNTVSMITDRIYVLHNGEIVEEGQTDDVLSNPRDDYTRS 236
Query: 251 LLESVPD 257
L+E+ PD
Sbjct: 237 LIEAAPD 243
>sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|1075085|pir||B64184 oligopeptide transport
ATP-binding protein oppF - Haemophilus influenzae
(strain Rd KW20) >gi|1574675|gb|AAC22774.1| (U32792)
oligopeptide ABC transporter, ATP-binding protein (oppF)
[Haemophilus influenzae Rd]
Length = 332
Score = 199 bits (502), Expect = 3e-50
Identities = 111/295 (37%), Positives = 174/295 (58%), Gaps = 5/295 (1%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKL 81
++AV +V+F + GE + +VGESG GK+T+ + I+ L++ + G+IL+ G+ + K
Sbjct: 36 LKAVKDVSFKLYAGETLGVVGESGCGKSTLARAIIGLVEASEGEILWLGKHLRK-QSAKQ 94
Query: 82 MNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVGLNP 141
K++Q +FQDP AS NP + + + + ++S E E V+ + VGL P
Sbjct: 95 WKETRKDIQMIFQDPLASLNPRMNIGEIIAEPLKIYQPHLSAAEVKEKVQAMMLKVGLLP 154
Query: 142 REILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNH 201
++ ++PH+ SGGQ QRI IARAL++EP ++I DE VS LD S + V+NLL +
Sbjct: 155 N-LINRYPHEFSGGQCQRIGIARALIIEPKMIICDEPVSALDVSIQAQVVNLLKSLQKEM 213
Query: 202 GTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLNVK 261
G S+IFI HDLA+ +ISD++++MY G+ +E G +V+++ HPYTK L+ +VP + K
Sbjct: 214 GLSLIFIAHDLAVVKHISDRVLVMYLGNAMELGSDVEVYNDTKHPYTKALMSAVPIPDPK 273
Query: 262 WE-FKGIEPEREE--GKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVAC 313
E K IE + + GC F RC A + C K +P +H+VAC
Sbjct: 274 LERNKSIELLEGDLPSPINPPSGCVFRTRCLKADENCAKQKPPFTSQNNSHFVAC 328
>pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC1095 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655564|gb|AAF94254.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 336
Score = 199 bits (502), Expect = 3e-50
Identities = 113/296 (38%), Positives = 177/296 (59%), Gaps = 8/296 (2%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKL 81
++AVD V + EGE + +VGESG GK+T + I+ L++ T G++++ G+D+ + K
Sbjct: 40 LKAVDGVNVRLYEGETLGVVGESGCGKSTFARAIIGLVQATHGEVVWLGQDLTRMQEVK- 98
Query: 82 MNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVGLNP 141
K +Q +FQDP AS NP V + +TF +S E + V+ + VGL P
Sbjct: 99 RRATRKQIQMIFQDPLASLNPRMTVGDIIAEPLQTFYPELSKQEVKDRVKEMMAKVGLLP 158
Query: 142 REILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNH 201
++ ++PH+ SGGQ QRI IARAL+++P ++I DE VS LD S + V+NLL E +
Sbjct: 159 N-VINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKEL 217
Query: 202 GTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESV--PDLN 259
G S++FI HDL++ +ISD++++MY G+ VE G ++++F NP HPYTK L+ +V PD N
Sbjct: 218 GLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGVSKELFANPKHPYTKALMSAVPIPDPN 277
Query: 260 VKWEFKGIEPEREE--GKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVAC 313
++ K I+ + + GC F RC A +C K +P ++ H V+C
Sbjct: 278 IE-RNKTIQMLEGDLPSPMNPPSGCVFRTRCPQATAECAKTKP-VIKGSDIHSVSC 331
>dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 347
Score = 199 bits (502), Expect = 3e-50
Identities = 117/326 (35%), Positives = 185/326 (55%), Gaps = 19/326 (5%)
Query: 2 LLEVQNL-TKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI- 59
+LEV++L T FT ++V+AVD VTFS+ +G+ + +VGESGSGK+ IL+LI
Sbjct: 12 ILEVRDLRTSFFTEA----FEVKAVDGVTFSVPKGKTLGIVGESGSGKSITSLSILKLIQ 67
Query: 60 ---KPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
K G+I FKGE++ + ++ + + +FQ+P S NP+Y V + FR
Sbjct: 68 EPGKVVGGEINFKGENLVTKNEAYMRKIRGNEISMIFQEPMTSLNPVYTVGQQISESFRI 127
Query: 117 FLKNVSDVEKDELVRRALESVGL----NPREILGKFPHQLSGGQLQRILIARALLVEPSL 172
K + K E ++R+++ + L +P + + ++PH+LSGG QR++IA AL P L
Sbjct: 128 HEK----LGKKEALKRSVDMLKLVGIPSPEKRVHQYPHELSGGMRQRVMIAMALACNPEL 183
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
LIADE + LD + + +L L+ + +D G S+I ITHDL + D + +MY G +VE
Sbjct: 184 LIADEPTTALDVTIQAQILELMKDLQDRLGMSIIMITHDLGVVAETCDYVAVMYCGKVVE 243
Query: 233 WGDTEKVFDNPLHPYTKMLLESVP--DLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSL 290
+ D + +F NP HPYT LL S+P D++++ E + +GC+FAPRC
Sbjct: 244 YADVKTLFKNPRHPYTVGLLNSLPRHDIDLEDEELSVIKGNVPSPADMPEGCRFAPRCPF 303
Query: 291 AKDKCWKIRPEPVEVEKNHWVACHLY 316
A D C + P+ E + + C +Y
Sbjct: 304 ASDICKERLPDLETDENGNQIRCWVY 329
>dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [Ochrobactrum
anthropi]
Length = 335
Score = 199 bits (501), Expect = 4e-50
Identities = 122/297 (41%), Positives = 169/297 (56%), Gaps = 16/297 (5%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKL 81
VRAVD V+ S++ GE + LVGESGSGK+TIG+ IL L +P SG I F G S
Sbjct: 34 VRAVDGVSLSVQAGETLGLVGESGSGKSTIGRAILGLNEPLSGTIHFDGRPTHS------ 87
Query: 82 MNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVGLNP 141
+ +Q VFQDP++S NP K+ V R F V + D VRR L VGL+
Sbjct: 88 RRDLRRRMQMVFQDPYSSLNPRLKIGDAIGEVLR-FHSIVPKQDVDREVRRLLSLVGLSA 146
Query: 142 REILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNH 201
+ + P ++SGGQ QR IARAL + P L+ DE V+ LD S + +LNLL + R
Sbjct: 147 A-MAERRPREMSGGQRQRAGIARALALRPDFLVLDEPVAALDVSIQAQILNLLTDLRQEL 205
Query: 202 GTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLNVK 261
G +++FI H L + ++SD+I ++Y G I+E G VF++ HPYTK LL +VP++N+
Sbjct: 206 GLTMLFIAHGLGVVRHMSDRIAVLYLGKIMEVGPAHAVFESSRHPYTKALLSAVPEINL- 264
Query: 262 WEFKGIEPEREEGKVWE----LKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACH 314
K P +G V GC+F RC +A+D C K +P V V +H+ CH
Sbjct: 265 --VKRQRPPVTQGDVPSPLNVPSGCRFRTRCPVAQDIC-KTQPPEVPVGPDHFSRCH 318
>gb|AAG20461.1| (AE005118) oligopeptide ABC transporter ATP-binding; AppF
[Halobacterium sp. NRC-1]
Length = 440
Score = 199 bits (500), Expect = 5e-50
Identities = 110/296 (37%), Positives = 171/296 (57%), Gaps = 20/296 (6%)
Query: 21 QVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDK 80
+VRAVD V+F ++ GE + +VGESG GK+T+ + +LRL PT+G + F GED+ ++D D
Sbjct: 39 RVRAVDGVSFEVRAGETLGIVGESGCGKSTVAESVLRLTDPTAGSVYFDGEDVTAYD-DT 97
Query: 81 LMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKD-ELVRRALESVGL 139
+ + + Q +FQ+P +SF+P + + V + E+ R LE VG+
Sbjct: 98 ALKRFRREAQMIFQNPDSSFDPRMTTGESVAEPLK--IHGVGPRSRRLEIARDLLERVGM 155
Query: 140 NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRD 199
+ + ++PH+LSGGQ QR+ +ARAL+V P L++ADE VS LD S + +VL LL + +
Sbjct: 156 SGEDA-ARYPHELSGGQKQRVALARALVVNPRLIVADEPVSALDVSVQAEVLTLLNDIQA 214
Query: 200 NHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLN 259
V+FI+HD+ + + D++ +MY G IVE G TE VF++P HPYT+ LL S+P +
Sbjct: 215 EFNLGVLFISHDMGVVREVCDRVAVMYLGEIVEMGRTEDVFNDPEHPYTRALLRSIPTVG 274
Query: 260 VKWE-----FKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHW 310
V+ +G P + GC F RC I+P+ + E+ HW
Sbjct: 275 VESRGTDAGLRGEVPPPSDPPT----GCNFHTRCPEV------IQPDGYDFEQAHW 320
>gb|AAG20587.1| (AE005129) dipeptide ABC transporter ATP-binding; DppF
[Halobacterium sp. NRC-1]
Length = 943
Score = 198 bits (499), Expect = 6e-50
Identities = 114/304 (37%), Positives = 176/304 (57%), Gaps = 20/304 (6%)
Query: 2 LLEVQNLTKIFT------SGLIGGYQ--VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGK 53
LL + L K F+ ++GG Q V+AVD V + EGE + LVGESG GK+T G+
Sbjct: 504 LLSSRGLEKHFSRADGWLDSMLGGDQEPVKAVDGVDLDVYEGETLGLVGESGCGKSTTGR 563
Query: 54 LILRLIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVD------ 107
ILRL++PT G+++F G+D+ + D+L ++Q +FQDP +S +P +
Sbjct: 564 SILRLVEPTDGRVVFAGDDVTDLNDDEL-RATRTDMQMIFQDPLSSLDPRQSIGDTILEP 622
Query: 108 -RVFDLVFRTFLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARAL 166
++ DL ++ +D ++ +++VGL+P + ++PH+LSGGQ QR+ IARAL
Sbjct: 623 LQIHDLPANPGAQSTRQARRDRVID-LMDAVGLDPSQY-DRYPHELSGGQRQRVGIARAL 680
Query: 167 LVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMY 226
V+P ++ADE VS LD S + +LNLL + +D + +FI HDL++ +I D+I +MY
Sbjct: 681 AVDPDFIVADEPVSALDVSVQAQILNLLEDLQDEFDLTYLFIAHDLSVVRHICDRIAVMY 740
Query: 227 RGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLN--VKWEFKGIEPEREEGKVWELKGCKF 284
G IVE T ++F P HPYTK LL S+PD + + + I + GC+F
Sbjct: 741 LGKIVETAQTAQLFSTPKHPYTKSLLSSIPDPDPLATTDDRIILEGDVPSPIDPPSGCRF 800
Query: 285 APRC 288
RC
Sbjct: 801 RTRC 804
Score = 131 bits (326), Expect = 1e-29
Identities = 84/227 (37%), Positives = 116/227 (51%), Gaps = 29/227 (12%)
Query: 92 VFQDPFASFNPLYKV--------------DRVFDLVFRTFLKNVSDVEKDELVRR----A 133
+FQDP S NP V ++ D +S + DE V
Sbjct: 234 IFQDPMTSLNPSLTVGEQVAESLRLHRYGEQPTDSWLNGLRAAISRGDTDEQVVADVVDV 293
Query: 134 LESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLN 192
L++VG+ P L ++PH+ SGG QR+LIA AL P LLIADE + LD + + +L+
Sbjct: 294 LDAVGIPEPETRLDEYPHEFSGGMRQRVLIAIALACRPRLLIADEPTTALDVTIQAQILD 353
Query: 193 LLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLL 252
+ + +D G SV+FITHDL + D++ +MY G IVE G E++F NP HPYT LL
Sbjct: 354 RISDLQDEFGMSVLFITHDLGVVAETCDRVAVMYAGEIVEEGPVEEIFHNPSHPYTYALL 413
Query: 253 ESVPDLNVKWEFKGIEPEREEGKVWEL----KGCKFAPRCSLAKDKC 295
ES+P + + + P EG V +L GC F RC A D C
Sbjct: 414 ESIP----RDDADRLHP--IEGNVPDLIDLPSGCHFEARCPWASDAC 454
>gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . (dppD-2)
[Sulfolobus solfataricus]
Length = 323
Score = 197 bits (495), Expect = 2e-49
Identities = 118/327 (36%), Positives = 183/327 (55%), Gaps = 18/327 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M L+V++L S IG +RA++ V F +++G+ + ++GE+GSGKTTI I+R +
Sbjct: 1 MSLQVRDLN---ISYKIGKGSIRAINRVYFQLEKGDSLGVIGETGSGKTTIANAIMRALP 57
Query: 61 PT---SGKILFKGEDIWSFDKDKLMNYY-YKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
SG I F +DI D++ +K + + Q +FNP+ +V +
Sbjct: 58 ENAEYSGSIFFNNKDILKMDQETYRKEIRWKKISIIPQYSMNAFNPIKRVGEQLVKIMME 117
Query: 117 FLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
N+ + E + + L P EI K P +LSGGQ QR++IA ALL++P L+IAD
Sbjct: 118 NDSNIDTSKASERIFYLFNQLSLPP-EIYKKLPDELSGGQRQRVVIASALLLDPELVIAD 176
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
E + LD + V++L+ + ++I+ITHD+A+ ++ K++ +Y G I+E+GD+
Sbjct: 177 EPTTALDVINQARVISLIKREIVDKQKTLIYITHDIAVVAGVAKKVLTLYAGEIMEFGDS 236
Query: 237 EKVFDNPLHPYTKMLLESVPDLNVKWEFK-----GIEPEREEGKVWELKGCKFAPRCSLA 291
K+F PLHPY+K LL SVPD+ K G P+ + E+KGC FAPRCS+A
Sbjct: 237 RKIFKEPLHPYSKGLLSSVPDIRFGKVKKVHYIPGDPPDLSK----EIKGCPFAPRCSIA 292
Query: 292 KDKCWKIRPEPVEVEKNHWVACHLYGG 318
KD C K+ + +VACHL GG
Sbjct: 293 KDIC-KVEKPKLRYVDGRYVACHLVGG 318
>pir||F83082 probable ATP-binding component of ABC dipeptide transporter PA4506
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950746|gb|AAG07894.1|AE004864_6 (AE004864) probable
ATP-binding component of ABC dipeptide transporter
[Pseudomonas aeruginosa]
Length = 323
Score = 197 bits (495), Expect = 2e-49
Identities = 114/319 (35%), Positives = 190/319 (58%), Gaps = 12/319 (3%)
Query: 2 LLEVQNLTKIF--TSGLIGGY-QVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRL 58
+L ++LT+ + + GL G+ QVRA++ V+F ++ G+ +++VGESG GK+T+ + + +
Sbjct: 4 VLTARDLTRHYEVSRGLFKGHAQVRALNGVSFELEAGKTLAVVGESGCGKSTLARALTLI 63
Query: 59 IKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL 118
+PTSG + G+++ KD+ ++VQ VFQ+P+AS NP K+ D + L
Sbjct: 64 EEPTSGSLKIAGQEVKGASKDQ-RRQLRRDVQMVFQNPYASLNPRQKIG---DQLAEPLL 119
Query: 119 KN--VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
N +S E+ E V++ + VGL P E ++PH SGGQ QRI +ARA++++P +L+AD
Sbjct: 120 INTALSREERREKVQQMMRQVGLRP-EHYQRYPHMFSGGQRQRIALARAMMLQPKVLVAD 178
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
E S LD S + VLNL + + T+ +FI+H+LA+ +++D +++MY G E G
Sbjct: 179 EPTSALDVSIQAQVLNLFMDLQQQFRTAYVFISHNLAVVRHVADDVLVMYLGRPAEMGPA 238
Query: 237 EKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPERE-EGKVWELKGCKFAPRCSLAKDKC 295
+K+++NPLHPYT+ LL + P ++ I + E + +GC F RC A ++C
Sbjct: 239 DKLYENPLHPYTRALLSATPAIHPDPTKPKIRIQGELPNPLNPPEGCAFHKRCPYATERC 298
Query: 296 WKIRPEPVEVEKNHWVACH 314
PE + + VACH
Sbjct: 299 RSEVPE-LRLLDQRQVACH 316
>gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-binding; YkfD
[Halobacterium sp. NRC-1]
Length = 445
Score = 196 bits (494), Expect = 2e-49
Identities = 123/317 (38%), Positives = 176/317 (54%), Gaps = 22/317 (6%)
Query: 2 LLEVQNLTKIF-TSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
L+EV +L K + G G V+AVD V F I+EGE + LVGESGSGKTT+G+ +++L
Sbjct: 19 LVEVTDLKKHYGDGGRFSGPPVKAVDGVNFEIQEGETLGLVGESGSGKTTLGRTLIQLET 78
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
T G + F G DI L + KN Q VFQDP +S N + + N
Sbjct: 79 ATEGTVSFDGRDITKLTGSDLKQWR-KNAQIVFQDPDSSLNDRMTIGEIVREPLDAHDWN 137
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
S E+ + V+ L SVGL ++PHQ SGGQ QRI IARAL +EP ++ DE VS
Sbjct: 138 -SPAERRDRVKELLSSVGLQADHYY-RYPHQFSGGQRQRIGIARALALEPEFMVLDEPVS 195
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
LDAS + +LNLL + +D G + +FI HDL++ +I D++ +MY G I+E G+TE+++
Sbjct: 196 ALDASVQAKILNLLEDLQDEFGLTYLFIAHDLSVVRHICDRVAVMYLGKIMEIGETEELY 255
Query: 241 DNPLHPYTKMLLESVP------DLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDK 294
+ +PYT+ LL ++P D N + G P GC+F+ RC
Sbjct: 256 ADAKNPYTRSLLSAIPRPDPTIDRN-RITLPGAPPSPRNPPA----GCQFSTRCPA---- 306
Query: 295 CWKIRPEP-VEVEKNHW 310
KIRPE +++ + W
Sbjct: 307 --KIRPEAYADIDDDTW 321
>dbj|BAB07358.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 308
Score = 196 bits (493), Expect = 3e-49
Identities = 109/243 (44%), Positives = 159/243 (64%), Gaps = 4/243 (1%)
Query: 19 GYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDK 78
GY +AVD V+ ++EG+ LVGESGSGKTT G+ I+ L K T+G ILF G+DI K
Sbjct: 25 GYN-KAVDGVSLELEEGQTYGLVGESGSGKTTTGRAIIGLNKLTAGHILFDGQDITKQLK 83
Query: 79 DKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVG 138
K N +N+Q +FQDP++S NP +V + R F K +S +E+ + V LE VG
Sbjct: 84 KK-KNDIRRNIQMIFQDPYSSLNPKKRVLDIIAEPLRNFEK-LSKLEERKRVEELLEIVG 141
Query: 139 LNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFR 198
L+ RE + K+PH+ SGGQ QRI IARA+ ++P L+IADE VS LD S + VLN + + +
Sbjct: 142 LS-RESIFKYPHEFSGGQRQRIGIARAIALKPKLIIADEPVSALDVSVQAQVLNFMKDIQ 200
Query: 199 DNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDL 258
+ +FI+HDL + ++ D+I IMYRG +VE G + ++++P H YTK L+ ++PD+
Sbjct: 201 KEFNLTYLFISHDLGIIRHMCDRIGIMYRGRLVEEGVRDDIYESPQHIYTKRLIAAIPDM 260
Query: 259 NVK 261
+ K
Sbjct: 261 DPK 263
>dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 196 bits (492), Expect = 4e-49
Identities = 111/323 (34%), Positives = 176/323 (54%), Gaps = 17/323 (5%)
Query: 5 VQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSG 64
V L K+ T +V AVD V+ + +GEI+ +VGESG GK+ I++L+ G
Sbjct: 5 VLELDKLRTHFFTDQGEVPAVDGVSLRLHQGEIIGIVGESGCGKSVTSLSIMQLVPNPPG 64
Query: 65 KIL-----FKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLK 119
KI+ FKGED+ ++ ++ +FQ+P S NPL+ + R K
Sbjct: 65 KIMSGHVYFKGEDLVQVSPKRMKQIRGNDIAMIFQEPMTSLNPLFTIGNQLIEAIRNHRK 124
Query: 120 NVSDVEKDELVRRALESVGLNPR--EILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
+ + V LE VG+ PR EI ++PHQLSGG QR++IA A+ +P +LIADE
Sbjct: 125 MTKQEARKQAVTM-LERVGI-PRADEIASEYPHQLSGGMRQRVMIAMAMCCDPKVLIADE 182
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTE 237
+ LD + + +L+L+ + H T+++ ITHDL + + +++++MY G +VE GD
Sbjct: 183 PTTALDVTIQAQILDLMRHLNEAHDTAILLITHDLGVVAELCNRVVVMYAGQVVEEGDVR 242
Query: 238 KVFDNPLHPYTKMLLESVPDLNVK----WEFKGIEPEREEGKVWELKGCKFAPRCSLAKD 293
+ +P HPYTK LL+S+P ++ + + G+ P + G V GC+FA RC +A +
Sbjct: 243 MILKHPKHPYTKGLLKSLPKIHEQSKRLYSIPGVVP--KPGTVGH--GCRFAARCEVAFE 298
Query: 294 KCWKIRPEPVEVEKNHWVACHLY 316
+C P+ +V H C LY
Sbjct: 299 RCKTTAPQLQQVATGHQCRCFLY 321
>emb|CAA61526.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 307
Score = 195 bits (490), Expect = 7e-49
Identities = 111/255 (43%), Positives = 157/255 (61%), Gaps = 4/255 (1%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
L+EV++L F G + AV N F IK+GE SLVGESGSGKTTIG+ I+ L
Sbjct: 5 LVEVKDLEISFGEGK---KKFGAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDT 61
Query: 62 TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNV 121
+SG+IL+ G+ I N + +Q +FQDP AS N VD + F
Sbjct: 62 SSGQILYDGKVINGRKSKSEANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFK 121
Query: 122 SDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSM 181
++ E+ E ++ + VGL E L ++PH+ SGGQ QRI IARAL++ P +IADE +S
Sbjct: 122 TEEERKEKIKNMMAEVGLLS-EHLTRYPHEFSGGQRQRIGIARALVMNPEFVIADEPISA 180
Query: 182 LDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFD 241
LD S R VLNLL + G + +FI HDL++ +ISD+I ++++G IVE +TE++F+
Sbjct: 181 LDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN 240
Query: 242 NPLHPYTKMLLESVP 256
NP+HPYT+ LL +VP
Sbjct: 241 NPIHPYTQSLLSAVP 255
>gb|AAG32327.1| (AF305548) oligopeptide permease [Streptococcus pyogenes]
Length = 307
Score = 194 bits (489), Expect = 9e-49
Identities = 111/255 (43%), Positives = 157/255 (61%), Gaps = 4/255 (1%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
L+EV++L F G + AV N F IK+GE SLVGESGSGKTTIG+ I+ L
Sbjct: 5 LVEVKDLEISFGEGK---KKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDT 61
Query: 62 TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNV 121
+SG+IL+ G+ I N + +Q +FQDP AS N VD + F
Sbjct: 62 SSGQILYDGKVINGRKSKSEANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFK 121
Query: 122 SDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSM 181
++ E+ E ++ + VGL E L ++PH+ SGGQ QRI IARAL++ P +IADE +S
Sbjct: 122 TEEERKEKIKNMMAEVGLLS-EHLTRYPHEFSGGQRQRIGIARALVMNPEFVIADEPISA 180
Query: 182 LDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFD 241
LD S R VLNLL + G + +FI HDL++ +ISD+I ++++G IVE +TE++F+
Sbjct: 181 LDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN 240
Query: 242 NPLHPYTKMLLESVP 256
NP+HPYT+ LL +VP
Sbjct: 241 NPIHPYTQSLLSAVP 255
>pir||E72536 probable oligopeptide transport ATP-binding protein APE1578 -
Aeropyrum pernix (strain K1) >gi|5105265|dbj|BAA80578.1|
(AP000062) 324aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 324
Score = 194 bits (488), Expect = 1e-48
Identities = 114/302 (37%), Positives = 168/302 (54%), Gaps = 7/302 (2%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP----TSGKILFKGEDIWSFD 77
V+AVD V+F+++ GE++ + GESGSGK+T+ IL L+ P G+I+ G D+ S
Sbjct: 22 VKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMS 81
Query: 78 KDKLMNYY-YKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALES 136
+ +L +K V VFQ P+Y V R + V + + V E + V LES
Sbjct: 82 EAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIH-RGVGRHEARQRVYELLES 140
Query: 137 VGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGE 196
VGL+ R I ++PH+LSGGQ QR++IA AL +EP ++IADE + LD + +LNLL +
Sbjct: 141 VGLH-RSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKK 199
Query: 197 FRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVP 256
S+I ITHDL++ +++ ++IMY G I E+G ++ VF P HPYT+ LL+++P
Sbjct: 200 LAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYGPSDAVFTKPQHPYTQALLKAIP 259
Query: 257 DLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACHLY 316
L + P GC+F PRC A D+C + P V H AC L
Sbjct: 260 KLRGPIDRLAYIPGSPPDLRNPPPGCRFHPRCPKAFDRCSREEPPLFRVGDGHLSACWLN 319
Query: 317 GG 318
G
Sbjct: 320 EG 321
>pir||B69856 oligopeptide transport ATP-binding protein homolog ykfD - Bacillus
subtilis >gi|2632021|emb|CAA05580.1| (AJ002571) YkfD
[Bacillus subtilis] >gi|2633654|emb|CAB13157.1| (Z99110)
similar to oligopeptide ABC transporter (permease)
[Bacillus subtilis]
Length = 327
Score = 193 bits (486), Expect = 2e-48
Identities = 118/296 (39%), Positives = 174/296 (57%), Gaps = 19/296 (6%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LLEV L F +G V+AVD VTF I+EGE LVGESG GK+T+G++++RL +P
Sbjct: 6 LLEVSQLKMHFDAGK--KRTVKAVDGVTFQIREGETFGLVGESGCGKSTLGRVLMRLYQP 63
Query: 62 TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNV 121
T G + ++G ++ + +K + + +Q +FQDP+AS NP V + ++ + N+
Sbjct: 64 TEGSVTYRGTNLHALS-EKEQFAFNRKLQMIFQDPYASLNPRMTVREI--ILEPMEIHNL 120
Query: 122 SDVEKDEL--VRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
+ K L V LE+VGL+P + ++PH+ SGGQ QRI IARAL + P ++ADE +
Sbjct: 121 YNTHKARLSVVDELLEAVGLHP-DFGSRYPHEFSGGQRQRIGIARALSLNPEFIVADEPI 179
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
S LD S + V+NLL + G + +FI HDL++ +ISD+I +MY G ++E ++ +
Sbjct: 180 SALDVSVQAQVVNLLKRLQKEKGLTFLFIAHDLSMVKHISDRIGVMYLGHMMEITESGTL 239
Query: 240 FDNPLHPYTKMLLESV----PDLNVKWE---FKGIEPEREEGKVWELKGCKFAPRC 288
+ PLHPYTK LL S+ P+L K E KG P V GC F RC
Sbjct: 240 YREPLHPYTKALLSSIPIPDPELEDKRERILLKGELP----SPVNPPSGCVFRTRC 291
>sp|P18766|AMIF_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN AMIF
>gi|98019|pir||S11153 oligopeptide transport protein
amiF - Streptococcus pneumoniae
>gi|47347|emb|CAA35217.1| (X17337) AmiF protein
[Streptococcus pneumoniae]
Length = 308
Score = 192 bits (483), Expect = 5e-48
Identities = 109/255 (42%), Positives = 156/255 (60%), Gaps = 4/255 (1%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
L+E+++L F G + AV N F I +GE SLVGESGSGKTTIG+ I+ L
Sbjct: 5 LVEIKDLEISFGEG---SKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDT 61
Query: 62 TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNV 121
++G I+F G+ I + + +Q +FQDP AS N VD +
Sbjct: 62 SNGDIIFDGQKINGKKSREQAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFK 121
Query: 122 SDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSM 181
+ E+ E V+ + VGL E L ++PH+ SGGQ QRI IARAL+++P +IADE +S
Sbjct: 122 DEEERKEKVQSIIREVGLLA-EHLTRYPHEFSGGQRQRIGIARALVMQPDFVIADEPISA 180
Query: 182 LDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFD 241
LD S R VLNLL +F+ G + +FI HDL++ +ISD+I ++Y+G IVE +TE++F+
Sbjct: 181 LDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN 240
Query: 242 NPLHPYTKMLLESVP 256
NP+HPYT+ LL +VP
Sbjct: 241 NPIHPYTQALLSAVP 255
>gb|AAA23706.1| (L08399) peripheral membrane protein [Escherichia coli]
Length = 333
Score = 192 bits (483), Expect = 5e-48
Identities = 105/283 (37%), Positives = 171/283 (60%), Gaps = 8/283 (2%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKL 81
V+A+D V+F+++ G+ +++VGESG GK+T+G+L+ + PT G++ ++G+D+ D +
Sbjct: 35 VKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPTGGELYYQGQDLLKHDP-QA 93
Query: 82 MNYYYKNVQAVFQDPFASFNPLYKVDRVFD--LVFRTFLKNVSDVEKDELVRRALESVGL 139
+ +Q VFQ+P+ S NP KV ++ + L+ T L S ++ E + VGL
Sbjct: 94 QKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL---SKEQRREKALSMMAKVGL 150
Query: 140 NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRD 199
E ++PH SGGQ QRI IAR L+++P ++IADE VS LD S R VLNL+ + +
Sbjct: 151 KT-EHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQ 209
Query: 200 NHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLN 259
G S +FI+HDL++ +I+D++++MY G VE G +++F+NP HPYT+ LL + P LN
Sbjct: 210 ELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRLN 269
Query: 260 VKWEFKGIEPERE-EGKVWELKGCKFAPRCSLAKDKCWKIRPE 301
+ I+ E + GC F RC C +++P+
Sbjct: 270 PDDRRERIKLSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQ 312
>sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1073370|pir||S47762 dipeptide transport protein dppF
- Escherichia coli >gi|466679|gb|AAB18518.1| (U00039)
was dppE [Escherichia coli] >gi|1789962|gb|AAC76565.1|
(AE000431) putative ATP-binding component of dipeptide
transport system [Escherichia coli K12]
Length = 334
Score = 192 bits (483), Expect = 5e-48
Identities = 105/283 (37%), Positives = 171/283 (60%), Gaps = 8/283 (2%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKL 81
V+A+D V+F+++ G+ +++VGESG GK+T+G+L+ + PT G++ ++G+D+ D +
Sbjct: 35 VKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPTGGELYYQGQDLLKHDP-QA 93
Query: 82 MNYYYKNVQAVFQDPFASFNPLYKVDRVFD--LVFRTFLKNVSDVEKDELVRRALESVGL 139
+ +Q VFQ+P+ S NP KV ++ + L+ T L S ++ E + VGL
Sbjct: 94 QKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL---SKEQRREKALSMMAKVGL 150
Query: 140 NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRD 199
E ++PH SGGQ QRI IAR L+++P ++IADE VS LD S R VLNL+ + +
Sbjct: 151 KT-EHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQ 209
Query: 200 NHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLN 259
G S +FI+HDL++ +I+D++++MY G VE G +++F+NP HPYT+ LL + P LN
Sbjct: 210 ELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRLN 269
Query: 260 VKWEFKGIEPERE-EGKVWELKGCKFAPRCSLAKDKCWKIRPE 301
+ I+ E + GC F RC C +++P+
Sbjct: 270 PDDRRERIKLSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQ 312
>sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
>gi|2119773|pir||I40543 oligopeptide transport
ATP-binding protein appD - Bacillus subtilis
>gi|677943|gb|AAA62356.1| (U20909) AppD [Bacillus
subtilis] >gi|2633490|emb|CAB12993.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 328
Score = 191 bits (480), Expect = 1e-47
Identities = 118/325 (36%), Positives = 173/325 (52%), Gaps = 18/325 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LLEV NL F + AVD V F I +GE V+LVGESGSGK+ I+ L++
Sbjct: 4 LLEVNNLKTYFFRKK---EPIPAVDGVDFHISKGETVALVGESGSGKSITSLSIMGLVQS 60
Query: 62 TSGKIL-----FKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
+ GKI+ + +D+ SF ++ V +FQ+P S NP+ + V
Sbjct: 61 SGGKIMDGSIKLEDKDLTSFTENDYCKIRGNEVSMIFQEPMTSLNPVLTIGEQITEVL-I 119
Query: 117 FLKNVSDVEKDELVRRALESVGLNPRE-ILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
+ KN+ E + L+ VG + E I+ ++PH+LSGG QR++IA AL P LLIA
Sbjct: 120 YHKNMKKKEARQRAVELLQMVGFSRAEQIMKEYPHRLSGGMRQRVMIAIALSCNPKLLIA 179
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE + LD + + VL L+ + TS++ ITHDL + +D++I+MY G +VE
Sbjct: 180 DEPTTALDVTIQAQVLELMKDLCQKFNTSILLITHDLGVVSEAADRVIVMYCGQVVENAT 239
Query: 236 TEKVFDNPLHPYTKMLLESVPDLNVKWE----FKGIEPEREEGKVWELKGCKFAPRCSLA 291
+ +F PLHPYT+ LL S+P ++ + + KG P + GC+FAPRC A
Sbjct: 240 VDDLFLEPLHPYTEGLLTSIPVIDGEIDKLNAIKGSVPTPDNLP----PGCRFAPRCPKA 295
Query: 292 KDKCWKIRPEPVEVEKNHWVACHLY 316
DKCW +P + + V C LY
Sbjct: 296 MDKCWTNQPSLLTHKSGRTVRCFLY 320
>pir||F64557 dipeptide transport ATP-binding protein dppF - Helicobacter pylori
(strain 26695) >gi|2313400|gb|AAD07371.1| (AE000548)
dipeptide ABC transporter, ATP-binding protein (dppF)
[Helicobacter pylori 26695]
Length = 268
Score = 189 bits (476), Expect = 3e-47
Identities = 113/263 (42%), Positives = 162/263 (60%), Gaps = 12/263 (4%)
Query: 2 LLEVQNLTKIFT--SGLIGGYQV-RAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRL 58
LLE++ L K + GL +V A++ ++F +++ E++S+VGESG GK+T K++ +
Sbjct: 3 LLEIKELKKSYAIDRGLFKPKRVIHALNGISFEVEQNEVLSIVGESGCGKSTTAKILAGI 62
Query: 59 IKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL 118
+ SG I F G+ F K +Y K VQ +FQDP++S NP +KV +++ L
Sbjct: 63 ERQDSGAIYFNGKRHLHFSKQDWFDYR-KKVQMIFQDPYSSLNPRWKVG---EIIAEPLL 118
Query: 119 KNVSDVEKDELVRRALE---SVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
N S K E+ + LE VGL E + ++PHQ SGGQ QRI IARAL++ PS++I
Sbjct: 119 LN-SHFSKKEIKTKVLEIMQKVGLK-LEWIDRYPHQFSGGQRQRIGIARALILHPSVVIC 176
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE VS LD S + VLNLL + + G + IFI+HDL + +ISDKII+M +G IVE GD
Sbjct: 177 DEPVSALDVSIQAQVLNLLLDLQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQIVETGD 236
Query: 236 TEKVFDNPLHPYTKMLLESVPDL 258
+ V P HPYT+ LL +VP L
Sbjct: 237 VDSVISAPKHPYTQKLLNAVPHL 259
>pir||A71952 dipeptide transport system ATP-binding protein - Helicobacter
pylori (strain J99) >gi|4154801|gb|AAD05857.1|
(AE001465) DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 268
Score = 189 bits (476), Expect = 3e-47
Identities = 113/263 (42%), Positives = 162/263 (60%), Gaps = 12/263 (4%)
Query: 2 LLEVQNLTKIFT--SGLIGGYQV-RAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRL 58
LLE++ L K + GL +V A++ ++F +++ E++S+VGESG GK+T K++ +
Sbjct: 3 LLEIKELKKSYAIDRGLFKPKRVIHALNGISFEVEQNEVLSIVGESGCGKSTTAKILAGI 62
Query: 59 IKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL 118
+ SG I F G+ F K +Y K VQ +FQDP++S NP +KV +++ L
Sbjct: 63 ERQDSGAIYFNGKRHLHFSKQDWFDYR-KKVQMIFQDPYSSLNPRWKVG---EIIAEPLL 118
Query: 119 KNVSDVEKDELVRRALE---SVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
N S K E+ + LE VGL E + ++PHQ SGGQ QRI IARAL++ PS++I
Sbjct: 119 LN-SHFSKKEIKTKVLEIMQKVGLK-LEWIDRYPHQFSGGQRQRIGIARALILHPSVVIC 176
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE VS LD S + VLNLL + + G + IFI+HDL + +ISDKII+M +G IVE GD
Sbjct: 177 DEPVSALDVSIQAQVLNLLLDLQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQIVETGD 236
Query: 236 TEKVFDNPLHPYTKMLLESVPDL 258
+ V P HPYT+ LL +VP L
Sbjct: 237 VDSVISAPKHPYTQKLLNAVPHL 259
>sp|Q07734|OPPF_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|1075750|pir||B53290 oligopeptide transport protein
oppF - Lactococcus lactis subsp. lactis
>gi|308851|gb|AAA16164.1| (L18760) ATP binding protein
[Lactococcus lactis] >gi|495178|gb|AAB00534.1| (U09553)
ATP binding protein [Lactococcus lactis]
Length = 319
Score = 189 bits (475), Expect = 4e-47
Identities = 106/241 (43%), Positives = 153/241 (62%), Gaps = 7/241 (2%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKL 81
V AVD V +I EGE V LVGESGSGK+TIGK I+ L + TSG++++KG+D+ K K+
Sbjct: 28 VLAVDGVDLTIHEGETVGLVGESGSGKSTIGKTIVGLEQMTSGQLIYKGQDV---SKKKI 84
Query: 82 MNY--YYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVGL 139
N Y K+VQ +FQD F+S NP + + R F K ++ E ++ + L+ VGL
Sbjct: 85 RNQLKYNKDVQMIFQDAFSSLNPRKTIYDIIAEPIRNFEKIDANTE-NKRIHELLDIVGL 143
Query: 140 NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRD 199
P++ L ++P Q SGGQ QRI IARA+ P L++ADE VS LD S + VLN + +
Sbjct: 144 -PKQALEQYPFQFSGGQQQRIGIARAVATNPKLIVADEPVSALDLSVQAQVLNFMKLIQK 202
Query: 200 NHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLN 259
+ G + +FI+HDL + +++D I +M+ G IVE G +FD P H YTK LL ++P ++
Sbjct: 203 DLGIAFLFISHDLGVVRHMTDNIAVMHNGRIVEKGTRRDIFDEPQHIYTKRLLSAIPSID 262
Query: 260 V 260
V
Sbjct: 263 V 263
>pir||T35983 probable peptide transport ATP-binding protein - Streptomyces
coelicolor >gi|4464268|emb|CAB37471.1| (AL035559)
putative peptide transport ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 359
Score = 189 bits (474), Expect = 5e-47
Identities = 122/325 (37%), Positives = 170/325 (51%), Gaps = 22/325 (6%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LL V+ L F G G RAVD V I+ GEIV+LVGESG GKTT+ + +L L++P
Sbjct: 32 LLSVRGLHVTFP-GRRGAAAARAVDGVDLDIRRGEIVALVGESGCGKTTLARSLLGLVRP 90
Query: 62 TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNV 121
T G++ F G + + + Y + Q V QDP S NP + V +D+V +
Sbjct: 91 TGGRVTFDGAPLGY--SARALKAYRRRAQLVLQDPSGSLNPRHTV---YDIVAEGLRIHG 145
Query: 122 SDVEKDELVRRALESVGLNPRE-ILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
++ V AL GL P E ++PH+LSGGQ QR++IA AL+++P LL+ADE V+
Sbjct: 146 HAGDERTAVAEALSRAGLRPPERFFLRYPHELSGGQRQRVVIAGALVLQPELLVADEPVA 205
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
LDAS R ++L LL R G S + +THDL L + I+D++ +MY G IVE G E+V
Sbjct: 206 SLDASVRGEILALLLRLRTELGLSALVVTHDLGLAWNIADRVAVMYLGRIVETGAVEQVL 265
Query: 241 DNPLHPYTKMLLESVPDL-NVKWEFKGIEPEREEGKVWELKGCKFAPRCSL--------- 290
P HPYT+ LL +P+ G P+ + GC+F RC +
Sbjct: 266 TAPRHPYTQALLSVLPEAPGAPVVLTGEPPDPS----YIPGGCRFHVRCPVLASGEAVRA 321
Query: 291 -AKDKCWKIRPEPVEVEKNHWVACH 314
D C E + VACH
Sbjct: 322 GVADACRNEELEILRGGDESQVACH 346
>pir||B72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980562|gb|AAD35168.1|AE001694_4 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 189 bits (474), Expect = 5e-47
Identities = 112/323 (34%), Positives = 171/323 (52%), Gaps = 11/323 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQV-RAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+L +NL + + G +V +AVD+V SI E EI + GESG GK+T+ + + I+
Sbjct: 3 VLRTENLKSYYILDIFGKKRVVKAVDDVNISIMENEIYGIAGESGCGKSTLLRALFAAIE 62
Query: 61 P----TSGKILF----KGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDL 112
P GK+L+ K D++S ++ + + V Q + NP+ K+ F
Sbjct: 63 PPQRIVGGKVLYRENGKEVDVYSLSDEERRRLRWSFISYVPQGSMSVLNPVVKIKETFKD 122
Query: 113 VFRTFLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSL 172
+ + E E+ + ++ +GL P EIL +PHQLSGG QR+ IA A ++ P +
Sbjct: 123 FIESHTTGKTKEEAYEMAKEHIKELGL-PIEILNAYPHQLSGGMRQRVTIALATVLSPKV 181
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
+IADE + LD T+ V+ LL E + + ++I +THD+ + ++D+I IMY G I+E
Sbjct: 182 IIADEPTTALDVVTQRGVVQLLKEIQSSRQNTIILVTHDMGVHANVTDRIAIMYAGKIIE 241
Query: 233 WGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAK 292
G TE++F+NP+HPYTK L+ S+P K + P GC F PRC A
Sbjct: 242 EGKTEEIFENPMHPYTKYLIYSLPKFGDKGR-RESAPGSPPSLADLPPGCSFHPRCPHAF 300
Query: 293 DKCWKIRPEPVEVEKNHWVACHL 315
D+C K P E H VAC L
Sbjct: 301 DRCKKEVPPLKEYLPGHRVACWL 323
>pir||H70788 probable peptidetransport system ABC-transporter ATP-binding
protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2960087|emb|CAA17985.1| (AL022121) dppD
[Mycobacterium tuberculosis]
Length = 548
Score = 188 bits (473), Expect = 7e-47
Identities = 102/260 (39%), Positives = 166/260 (63%), Gaps = 9/260 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGY---QVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRL 58
+L V LTKI+ + + RAVD V+F + +++VGESGSGK+T+ +++L L
Sbjct: 281 ILVVSELTKIYRESRGAPWRRVESRAVDGVSFRLPRASTLAIVGESGSGKSTLARMVLGL 340
Query: 59 IKPTSGKILFKGE-DIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
++PTSG ++F G D+ + +D+++ + + VQ VFQ+P++S +P+Y V R + R
Sbjct: 341 LQPTSGTVVFDGTYDVGALARDQVLAFR-RRVQPVFQNPYSSLDPMYSVFRAIEEPLR-- 397
Query: 118 LKNVSDV-EKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
+ +V D ++ VR ++ V L P ILG+ P +LSGGQ QR+ IARAL + P +L+ D
Sbjct: 398 VHHVGDRRQRQRAVRELVDQVAL-PSSILGRRPRELSGGQRQRVAIARALALRPEVLVCD 456
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
EAVS LD + +L+LL + + + G + +FI+HDLA+ I+D +++M G +VE T
Sbjct: 457 EAVSALDVLVQAQILDLLADLQADLGLTYLFISHDLAVIRQIADDVLVMRAGRVVEHAST 516
Query: 237 EKVFDNPLHPYTKMLLESVP 256
E+VF P H YT+ LL+++P
Sbjct: 517 EEVFSRPRHEYTRQLLQAIP 536
Score = 152 bits (380), Expect = 5e-36
Identities = 96/268 (35%), Positives = 145/268 (53%), Gaps = 20/268 (7%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI-- 59
LL V+ L F G AV V +++ G+ V++VGESGSGK+T IL L+
Sbjct: 8 LLSVEGLEVTF------GTDAPAVCGVDLAVRSGQTVAVVGESGSGKSTTAAAILGLLPA 61
Query: 60 --KPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
+ T+G+++F G DI D +L + + + V QDP + NP++KV R
Sbjct: 62 GGRITAGRVVFDGRDITGADAKRLRSIRGREIGYVPQDPMTNLNPVWKVGFQVTEALR-- 119
Query: 118 LKNVSDVEKDELVRRALE---SVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLL 173
++ + RRA+E GL +P + G++PHQLSGG QR LIA L P LL
Sbjct: 120 ----ANTDGRAARRRAVELLAEAGLPDPAKQAGRYPHQLSGGMCQRALIAIGLAGRPRLL 175
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEW 233
IADE S LD + + VL+ L D GT+++ ITHDLAL ++ ++++ RG +VE
Sbjct: 176 IADEPTSALDVTVQRQVLDHLQGLTDELGTALLLITHDLALAAQRAEAVVVVRRGVVVES 235
Query: 234 GDTEKVFDNPLHPYTKMLLESVPDLNVK 261
G + + +P H YT+ L+ + P L +
Sbjct: 236 GAAQSILQSPQHEYTRRLVAAAPSLTAR 263
>pir||C72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980544|gb|AAD35152.1|AE001692_9 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 331
Score = 188 bits (473), Expect = 7e-47
Identities = 119/336 (35%), Positives = 192/336 (56%), Gaps = 30/336 (8%)
Query: 2 LLEVQNLTKIF--TSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
+LE+++L F T G V+AVD V+F I+ GEI+ LVGESG GK+ + ILR++
Sbjct: 4 VLEIRDLKVYFDLTEGT-----VKAVDGVSFDIRRGEILGLVGESGCGKSVTAQSILRIL 58
Query: 60 KPTS----GKILF----KGEDIWSFDKD--KLMNYYYKNVQAVFQDPFASFNPLYKVDRV 109
++ G+I+F K D+ D + ++ + K++ +FQ+P ASF+P+Y V
Sbjct: 59 PKSARIVNGEIVFHRNGKTLDLTRLDPEGEEIRDIRGKDISMIFQEPMASFSPVYTVGA- 117
Query: 110 FDLVFRTFL-KNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALL 167
++ L +NVS E + V L+ V + N +++ +P +LSGG LQR +IA A+
Sbjct: 118 -QMIEAILLHENVSKEEARKRVVEMLKKVKIPNAEKVVDMYPFELSGGMLQRCMIAMAMS 176
Query: 168 VEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYR 227
+ P+LL+ADE + LD + + +L L+ E + + +S++ ITHD+ + ++D++ +MY
Sbjct: 177 LNPTLLLADEPTTALDVTIQAQILYLMKELQKEYHSSILLITHDMGVVAQMADRVAVMYL 236
Query: 228 GSIVEWGDTEKVFDNPLHPYTKMLLESVPDLNVK----WEFKGIEPEREEGKVWELKGCK 283
G+IVE + ++F NPLHPYT+ LL S+P + ++ KG+ P+ GC+
Sbjct: 237 GNIVETAEVFELFKNPLHPYTQALLRSIPKIGIRKTRLETIKGMVPDPYNLPT----GCR 292
Query: 284 FAPRC-SLAKDKCWKIRPEPVEVEKNHWVACHLYGG 318
F RC K C P VEV+ H V C LYGG
Sbjct: 293 FHNRCEKFMKGLCDVKEPPEVEVKPGHKVKCFLYGG 328
>pir||F72049 peptide ABC transporter, ATP-binding protein CP0065 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376983|gb|AAD18821.1| (AE001650) ABC ATPase
Dipeptide Transport [Chlamydophila pneumoniae CWL029]
>gi|7189002|gb|AAF37954.1| (AE002170) peptide ABC
transporter, ATP-binding protein [Chlamydophila
pneumoniae AR39] >gi|8979054|dbj|BAA98889.1| (AP002547)
ABC ATPase dipeptide transport [Chlamydophila pneumoniae
J138]
Length = 324
Score = 188 bits (472), Expect = 9e-47
Identities = 108/303 (35%), Positives = 169/303 (55%), Gaps = 9/303 (2%)
Query: 21 QVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK----PTSGKILFKGEDIWSF 76
Q V +++F+I EG+ ++++GESGSGK+ ILRL+ SG++ F+G ++ +
Sbjct: 22 QYPIVQSLSFTINEGQTLAIIGESGSGKSVSAHAILRLLPCPPFSVSGQVNFQGHNLLTA 81
Query: 77 DKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALES 136
+ + +FQ+P AS NP++ +++ F + T L ++V K++++ ALE
Sbjct: 82 SRSIQKKIIGTEISMIFQNPQASLNPVFTIEQQFREIIHTHLALTAEVAKEKMLY-ALEE 140
Query: 137 VGLN-PREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLG 195
G + PR L +PHQLSGG LQRI IA ALL P LLIADE + LD S + +L LL
Sbjct: 141 TGFHDPRLCLNLYPHQLSGGMLQRICIAMALLCSPKLLIADEPTTALDVSVQYQILQLLK 200
Query: 196 EFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESV 255
+ G S++ ITH++ + +D ++++Y G +VE ++F NP HPYT+ LL S
Sbjct: 201 TLQKKTGMSLLIITHNMGVVAETADDVLVLYAGRMVECAPAVQMFHNPSHPYTRDLLASR 260
Query: 256 PDLNVK--WEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVAC 313
P L + F I + + GC++ PRCS ++C PE V + H V C
Sbjct: 261 PSLQPQQLGSFNPIPGQPPHYTAFP-SGCRYHPRCSKILNRCSAEAPEIYPVREGHKVRC 319
Query: 314 HLY 316
LY
Sbjct: 320 WLY 322
>pir||E64820 probable oligopeptide transport protein - Escherichia coli
>gi|1787051|gb|AAC73916.1| (AE000185) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 612
Score = 187 bits (471), Expect = 1e-46
Identities = 113/261 (43%), Positives = 161/261 (61%), Gaps = 11/261 (4%)
Query: 2 LLEVQNLTKIFT--SGLIGGY--QVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILR 57
+L V+NL F SGL+ +V AV+ V+F + GE +SLVGESGSGK+T G+ +LR
Sbjct: 302 VLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 361
Query: 58 LIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
L++ G+I+F G+ I + KL +++Q +FQDP+AS +P + D +
Sbjct: 362 LVESQGGEIIFNGQRIDTLSPGKLQALR-RDIQFIFQDPYASLDPRQTIG---DSIIEPL 417
Query: 118 LKNVSDVEKDELVRRA--LESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
+ KD R A LE VGL P E ++PH+ SGGQ QRI IARAL + P ++IA
Sbjct: 418 RVHGLLPGKDAAARVAWLLERVGLLP-EHAWRYPHEFSGGQRQRICIARALALNPKVIIA 476
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DEAVS LD S R ++NLL + + + G + +FI+HD+A+ IS ++ +MY G IVE G
Sbjct: 477 DEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGP 536
Query: 236 TEKVFDNPLHPYTKMLLESVP 256
VF+NP HPYT+ LL +VP
Sbjct: 537 RRAVFENPQHPYTRKLLAAVP 557
Score = 155 bits (388), Expect = 6e-37
Identities = 94/281 (33%), Positives = 155/281 (54%), Gaps = 18/281 (6%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
+L V+NL F ++ AV N++FS++ GE +++VGESGSGK+ ++RL++
Sbjct: 1 MLAVENLNIAFMQDQ---QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ 57
Query: 62 TSG-----KILFKGE-----DIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFD 111
G K+L + ++ + ++ + ++ +FQ+P S NP++ V
Sbjct: 58 AGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIA 117
Query: 112 LVFRTFLKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEP 170
R +N S E +R L+ V + + IL ++PHQLSGG QR++IA AL P
Sbjct: 118 ESIRLH-QNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRP 176
Query: 171 SLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSI 230
++LIADE + LD + + +L L+ + VIFITHD+ + I+D++++MY+G
Sbjct: 177 AVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 236
Query: 231 VEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPER 271
VE G E++F P HPYT+ LL +VP L KG++ R
Sbjct: 237 VETGTVEQIFHAPQHPYTRALLAAVPQLGA---MKGLDYPR 274
>dbj|BAA35517.1| (D90720) Hypothetical ABC transporter ATP-binding protein in bcr
5'region. [Escherichia coli] >gi|4062406|dbj|BAA35524.1|
(D90721) Hypothetical ABC transporter ATP-binding
protein in bcr 5'region. [Escherichia coli]
Length = 659
Score = 187 bits (471), Expect = 1e-46
Identities = 113/261 (43%), Positives = 161/261 (61%), Gaps = 11/261 (4%)
Query: 2 LLEVQNLTKIFT--SGLIGGY--QVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILR 57
+L V+NL F SGL+ +V AV+ V+F + GE +SLVGESGSGK+T G+ +LR
Sbjct: 349 VLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 408
Query: 58 LIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
L++ G+I+F G+ I + KL +++Q +FQDP+AS +P + D +
Sbjct: 409 LVESQGGEIIFNGQRIDTLSPGKLQALR-RDIQFIFQDPYASLDPRQTIG---DSIIEPL 464
Query: 118 LKNVSDVEKDELVRRA--LESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
+ KD R A LE VGL P E ++PH+ SGGQ QRI IARAL + P ++IA
Sbjct: 465 RVHGLLPGKDAAARVAWLLERVGLLP-EHAWRYPHEFSGGQRQRICIARALALNPKVIIA 523
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DEAVS LD S R ++NLL + + + G + +FI+HD+A+ IS ++ +MY G IVE G
Sbjct: 524 DEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGP 583
Query: 236 TEKVFDNPLHPYTKMLLESVP 256
VF+NP HPYT+ LL +VP
Sbjct: 584 RRAVFENPQHPYTRKLLAAVP 604
Score = 155 bits (387), Expect = 8e-37
Identities = 94/281 (33%), Positives = 155/281 (54%), Gaps = 18/281 (6%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
+L V+NL F ++ AV N++FS++ GE +++VGESGSGK+ ++RL++
Sbjct: 48 VLAVENLNIAFMQDQ---QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ 104
Query: 62 TSG-----KILFKGE-----DIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFD 111
G K+L + ++ + ++ + ++ +FQ+P S NP++ V
Sbjct: 105 AGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIA 164
Query: 112 LVFRTFLKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEP 170
R +N S E +R L+ V + + IL ++PHQLSGG QR++IA AL P
Sbjct: 165 ESIRLH-QNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRP 223
Query: 171 SLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSI 230
++LIADE + LD + + +L L+ + VIFITHD+ + I+D++++MY+G
Sbjct: 224 AVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 283
Query: 231 VEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPER 271
VE G E++F P HPYT+ LL +VP L KG++ R
Sbjct: 284 VETGTVEQIFHAPQHPYTRALLAAVPQLGA---MKGLDYPR 321
>sp|P75796|YLIA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YLIA
Length = 629
Score = 187 bits (471), Expect = 1e-46
Identities = 113/261 (43%), Positives = 161/261 (61%), Gaps = 11/261 (4%)
Query: 2 LLEVQNLTKIFT--SGLIGGY--QVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILR 57
+L V+NL F SGL+ +V AV+ V+F + GE +SLVGESGSGK+T G+ +LR
Sbjct: 319 VLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 378
Query: 58 LIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
L++ G+I+F G+ I + KL +++Q +FQDP+AS +P + D +
Sbjct: 379 LVESQGGEIIFNGQRIDTLSPGKLQALR-RDIQFIFQDPYASLDPRQTIG---DSIIEPL 434
Query: 118 LKNVSDVEKDELVRRA--LESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
+ KD R A LE VGL P E ++PH+ SGGQ QRI IARAL + P ++IA
Sbjct: 435 RVHGLLPGKDAAARVAWLLERVGLLP-EHAWRYPHEFSGGQRQRICIARALALNPKVIIA 493
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DEAVS LD S R ++NLL + + + G + +FI+HD+A+ IS ++ +MY G IVE G
Sbjct: 494 DEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGP 553
Query: 236 TEKVFDNPLHPYTKMLLESVP 256
VF+NP HPYT+ LL +VP
Sbjct: 554 RRAVFENPQHPYTRKLLAAVP 574
Score = 155 bits (387), Expect = 8e-37
Identities = 94/281 (33%), Positives = 155/281 (54%), Gaps = 18/281 (6%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
+L V+NL F ++ AV N++FS++ GE +++VGESGSGK+ ++RL++
Sbjct: 18 VLAVENLNIAFMQDQ---QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ 74
Query: 62 TSG-----KILFKGE-----DIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFD 111
G K+L + ++ + ++ + ++ +FQ+P S NP++ V
Sbjct: 75 AGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIA 134
Query: 112 LVFRTFLKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEP 170
R +N S E +R L+ V + + IL ++PHQLSGG QR++IA AL P
Sbjct: 135 ESIRLH-QNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRP 193
Query: 171 SLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSI 230
++LIADE + LD + + +L L+ + VIFITHD+ + I+D++++MY+G
Sbjct: 194 AVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 253
Query: 231 VEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPER 271
VE G E++F P HPYT+ LL +VP L KG++ R
Sbjct: 254 VETGTVEQIFHAPQHPYTRALLAAVPQLGA---MKGLDYPR 291
>pir||C72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981605|gb|AAD36139.1|AE001766_5 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 187 bits (470), Expect = 2e-46
Identities = 114/330 (34%), Positives = 190/330 (57%), Gaps = 20/330 (6%)
Query: 2 LLEVQNL-TKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
LL+++NL T FT + V+AVD V+F I+EG + +VGESG GK+ + I++L+
Sbjct: 4 LLQIKNLRTYFFTDEGV----VKAVDGVSFEIEEGRTLGVVGESGCGKSVTARSIIKLLS 59
Query: 61 PT----SGKILFKGE----DIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKV-DRVFD 111
SG+IL+ + D+ F K+++ +++ +FQ+P A+F+P+Y + D++ +
Sbjct: 60 TAGRIVSGEILYNMDGQMVDLVKFSKEEIRKVRGRHIAMIFQEPMAAFSPVYTIGDQITE 119
Query: 112 LVFRTFLKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEP 170
+ F ++ E E L VG+ P +++ +P + SGG QR +IA AL P
Sbjct: 120 GMIYHF--GITKQEARERAVELLRRVGIPKPEKMIDSYPFEYSGGMRQRAMIAMALSCNP 177
Query: 171 SLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSI 230
LLIADE + LD + + VL+LL + + + +++ ITH++ + ++D +++MY G +
Sbjct: 178 RLLIADEPTTALDVTIQAQVLDLLKDLQQEYKMAIMMITHNMGVVAEMADHVVVMYLGRV 237
Query: 231 VEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWE-FKGIEPEREEGKVWELKGCKFAPRCS 289
VE E++F NP HPYT +LL S+P + + E + IE + + + KGC+F PRC
Sbjct: 238 VESAPVEELFYNPKHPYTSLLLRSIPVVGKRVERLEVIEGDVPDPRNMP-KGCRFHPRCP 296
Query: 290 -LAKDKCWKIRPEPVEVEKNHWVACHLYGG 318
+ K C + P VEV H V+C LYGG
Sbjct: 297 YMMKGICDEREPVEVEVGPEHRVSCFLYGG 326
>pir||F71014 probable dipeptide transport ATP-binding protein dppD - Pyrococcus
horikoshii >gi|3257835|dbj|BAA30518.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppD [Pyrococcus horikoshii]
Length = 329
Score = 186 bits (467), Expect = 3e-46
Identities = 114/327 (34%), Positives = 182/327 (54%), Gaps = 17/327 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
+L+V++LT F + G V+A++ V+F + +GE +LVGE+G GK+ + I +LI+
Sbjct: 8 ILQVRDLTVHFYT--YAGI-VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
Query: 62 ----TSGKILFKGEDIWSFDKDKLMNYYYKNVQA-----VFQDPFASFNPLYKVDRVFDL 112
G++L+ ED D KL + ++ +FQDP +S +PLY V
Sbjct: 65 PGRIVGGQVLYYREDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHSSLDPLYTVGYQIAE 124
Query: 113 VFRTF--LKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVE 169
+KN+ + K + L+SV + +P+ + +PH+LSGG QR++I L
Sbjct: 125 AMEVHGKIKNIKEGIKKAV--DILKSVLIPDPQRRVNNYPHELSGGMKQRVVIGIGLSNN 182
Query: 170 PSLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGS 229
P +LIADE + LD + + +L+L+ + ++ + +VI ITH+L + +D++ +MY G
Sbjct: 183 PRILIADEPTTALDVTVQAQILDLINQLKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
Query: 230 IVEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCS 289
IVE G +++F NPLHPYT+ LL +VP+ K E P + GC+F PRC
Sbjct: 243 IVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLINPPSGCRFHPRCP 302
Query: 290 LAKDKCWKIRPEPVEVEKNHWVACHLY 316
A D C + PE E+E H+VACHLY
Sbjct: 303 KAMDICKQKVPELKEIEPGHFVACHLY 329
>pir||B82393 ABC transporter, ATP-binding protein VCA0977 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658417|gb|AAF96873.1| (AE004424) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 539
Score = 186 bits (467), Expect = 3e-46
Identities = 93/235 (39%), Positives = 150/235 (63%), Gaps = 3/235 (1%)
Query: 24 AVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKLMN 83
AV ++ +K+GE + +VGESGSGK+T+G+ ++ L+ P++G+I FKG+D + + + +
Sbjct: 302 AVKGISLELKQGETLGIVGESGSGKSTLGRALIGLL-PSTGQIAFKGQDFRALSEKQRLA 360
Query: 84 YYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVGLNPRE 143
K++Q VFQDP+ S +P V + ++S +E+ + RRALE V L+P
Sbjct: 361 LK-KDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLDPNS 419
Query: 144 ILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNHGT 203
I ++PH+ SGGQ QRI IARAL++EPS ++ DE S LD S ++ V+ LL E +
Sbjct: 420 I-NRYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNI 478
Query: 204 SVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDL 258
+FI+HDLA+ +SD++++M +G ++E G E +F NP H YTK L+ + D+
Sbjct: 479 GYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAASFDI 533
Score = 178 bits (446), Expect = 1e-43
Identities = 98/261 (37%), Positives = 158/261 (59%), Gaps = 10/261 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LL+V+NL+ FT+ V AV NV+F I+ GE +++VGESGSGK+ +++L+
Sbjct: 6 LLQVRNLSVSFTTN---DGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPK 62
Query: 62 TS-----GKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
+ I+F+GE++ + ++ + +FQ+P S NP +V R
Sbjct: 63 NARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRC 122
Query: 117 FLKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
+NVS + + V + V L +P+ KFPH+ SGGQLQRI+IA AL+ EP +LIA
Sbjct: 123 H-RNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIA 181
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE + LD + + +VL L+ E + N G +++FITHDL + +++D++++M +G +VE G
Sbjct: 182 DEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGS 241
Query: 236 TEKVFDNPLHPYTKMLLESVP 256
TE++F P H YT+ML+ S+P
Sbjct: 242 TEQLFLQPEHDYTRMLINSIP 262
>dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 340
Score = 185 bits (466), Expect = 4e-46
Identities = 112/324 (34%), Positives = 171/324 (52%), Gaps = 16/324 (4%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LL+++NLT F I AVDNVT ++ + E++++VGESGSGK+ + I+ L P
Sbjct: 6 LLQIRNLTTAFQ---IKDDFYAAVDNVTLNVNKNEVLAIVGESGSGKSALANTIMGLHNP 62
Query: 62 T----SGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
G+I FKGE++ KL + +FQDP + NPL +
Sbjct: 63 ERTKIEGEINFKGENLVKLPVSKLNKIRGDKLSMIFQDPLTALNPLMIIGEQIGEALLLH 122
Query: 118 LKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
++++ E+ + V L VG+ P ++PH+LSGG QR++IA A+ EP LIAD
Sbjct: 123 -RSLTKAERKKKVIDLLNLVGIPRPESTYEQYPHELSGGMRQRVMIAAAIACEPEFLIAD 181
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
E + LD + + +L+L+ + ++ +I ITHDL + ++D++ +MY G IVE D
Sbjct: 182 EPTTALDVTIQAQILDLIRDLKEKIHAGIILITHDLGVVAEMADRVAVMYAGQIVEIADV 241
Query: 237 EKVFDNPLHPYTKMLLESVPDLNVKWE----FKGIEPEREEGKVWELKGCKFAPRCSLAK 292
+F+ PLHPYT+ LL SVP + E +GI P + KGC+F R
Sbjct: 242 FTLFERPLHPYTRSLLNSVPSESNDQEKLHVIQGIVPALQN---LPRKGCRFKDRIPWLS 298
Query: 293 DKCWKIRPEPVEVEKNHWVACHLY 316
+ + PE EVE H+V C Y
Sbjct: 299 ESAHEDHPELHEVEPGHFVRCTCY 322
>pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655050|gb|AAF93783.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 327
Score = 185 bits (465), Expect = 6e-46
Identities = 106/304 (34%), Positives = 171/304 (55%), Gaps = 16/304 (5%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP----TSGKILFKGEDIWSFD 77
VRA +NV+F + GE+ L GESG GK+T+ ++RL KP T G+++F GEDI +
Sbjct: 22 VRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPAFITGGEVIFNGEDILKYS 81
Query: 78 KDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVF-DLVFRTFLKNVSDVEKDELVRRA--- 133
+++ + +K + VFQ + NP+ ++ F D++ R +++ +++ RRA
Sbjct: 82 DERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVITRH-----TNMTREQAKRRAEGL 136
Query: 134 LESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNL 193
LE V ++P L +PHQ SGG QR++IA AL + P ++I DE + LD + ++L
Sbjct: 137 LEIVDIHPSR-LNDYPHQFSGGMRQRLVIAIALALNPKMIIMDEPTTALDVVVQREILQK 195
Query: 194 LGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLE 253
+ ++ G S++FITHDL+L SD+I IMY G ++E ++++ + P HPYTK L
Sbjct: 196 IYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQILETPYHPYTKGLGS 255
Query: 254 SVPDL-NVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVA 312
S P L K + GI P + +GC+F RC + C K+ ++E +
Sbjct: 256 SFPPLTGPKTKLTGI-PGNPLNLLDIPQGCRFQARCDRVHEACTKVPTVLRQIEHGRFSN 314
Query: 313 CHLY 316
CHLY
Sbjct: 315 CHLY 318
>pir||C72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981011|gb|AAD35585.1|AE001726_19 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 384
Score = 185 bits (465), Expect = 6e-46
Identities = 138/384 (35%), Positives = 196/384 (50%), Gaps = 75/384 (19%)
Query: 2 LLEVQNLTKIFT--SGL---IGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKT------- 49
+L V+NL K F +G+ I G+ V+AVD V+FSI EGE LVGESG GKT
Sbjct: 5 ILRVENLVKHFPIRAGVFKRIVGW-VKAVDGVSFSINEGETFGLVGESGCGKTTIGMTLL 63
Query: 50 -----TIGKLIL----------------RLIKPT--SGKILFKGEDIWSFD--------- 77
T G++I+ + IK T S + K D+ +
Sbjct: 64 RLYEPTSGRIIVDNEDTTYYFMPRSKAKKYIKQTYLSRFVNMKESDVEKLEGVDREYARI 123
Query: 78 --------KDKLMNY-----------YYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL 118
K M+ + + +Q VFQDP++S NP +V + T
Sbjct: 124 FFEEAKGSPKKFMSILLDDLPEKRKKFRREMQIVFQDPYSSLNPRLRVKSIVGEGIVTH- 182
Query: 119 KNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEA 178
+ E ++ ++ LE VG+ P + +FPH+ SGGQ QRI IARAL +EP L++ADEA
Sbjct: 183 RIARGKEVEKRIKEILEDVGI-PSAYVYRFPHEFSGGQRQRIGIARALALEPKLVVADEA 241
Query: 179 VSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEK 238
V+ LD S R ++NL+ + + H + IFI+HDLA+ +ISD+I +MY G +VE +
Sbjct: 242 VAALDVSIRSQIINLMEDLQREHKLTYIFISHDLAVVKHISDRIGVMYLGKMVELAPKKD 301
Query: 239 VFDNPLHPYTKMLLES--VPDLNVKWE---FKGIEPEREEGKVWELKGCKFAPRCSLAKD 293
+F+ PLHPYT L+ + VPD K E KG P + GC+F RC +AK+
Sbjct: 302 LFEKPLHPYTVALMSAIPVPDPTKKRERIILKGDVP----SPINPPSGCRFHTRCPIAKE 357
Query: 294 KCWKIRPEPVEVEKNHWVACHLYG 317
C K P EVE+ H+VACH G
Sbjct: 358 ICSKEEPAFREVEEGHFVACHFPG 381
>pir||T45281 probable ABC transporter intracellular ATPase chain BldKE
[imported] - Streptomyces coelicolor (fragment)
>gi|1532205|gb|AAB09558.1| (U68036) putative ABC
transporter intracellular ATPase subunit BldKE
[Streptomyces coelicolor A3(2)]
Length = 284
Score = 184 bits (462), Expect = 1e-45
Identities = 104/258 (40%), Positives = 153/258 (58%), Gaps = 10/258 (3%)
Query: 13 TSGLIGGYQ-------VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGK 65
TS + GG+ ++AVD V F + G + LVGESG GK+T G+ + RL +PT G
Sbjct: 25 TSPIKGGFPDQAHRRPLKAVDRVDFEVFPGRELGLVGESGCGKSTTGRQLTRLYEPTQGS 84
Query: 66 ILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVE 125
I ++G+DI ++ +L +Q +FQDP+AS NP V + N
Sbjct: 85 IEYRGKDITRANRRELAPVR-SEIQMIFQDPYASLNPRQTVGTIISGPMEINGINPPG-G 142
Query: 126 KDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDAS 185
+++ VR LE VGLNP E +FPH+ SGGQ QRI +ARA+ ++P L++ADE VS LD S
Sbjct: 143 REKRVRELLEIVGLNP-EHYNRFPHEFSGGQRQRIGVARAVALQPKLIVADEPVSALDVS 201
Query: 186 TRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLH 245
+ V+NLL E + G + +FI HDLA+ + S ++ +MY G IVE D + +++ P H
Sbjct: 202 IQAQVVNLLQEVQREMGIAFVFIAHDLAIVRHFSQRVAVMYLGKIVEIADRDSLYNRPRH 261
Query: 246 PYTKMLLESVPDLNVKWE 263
PYT LL +VP+ ++ E
Sbjct: 262 PYTHALLSAVPETDLDAE 279
>gb|AAF73094.1|AF103793_5 (AF103793) ATPase OppF [Listeria monocytogenes]
Length = 325
Score = 184 bits (462), Expect = 1e-45
Identities = 101/258 (39%), Positives = 153/258 (59%), Gaps = 6/258 (2%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LLE+ NL + F G +VRAVD+++F I +GE + LVGESG GK+T G+ I+RL
Sbjct: 8 LLEIHNLKQYFNKGTAS--EVRAVDDISFDIYKGETLGLVGESGCGKSTTGRTIIRLYDA 65
Query: 62 TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNV 121
T G++++ G+D+ + K M + + +Q +FQDP+AS NP KV + R
Sbjct: 66 TGGEVIYNGKDVHARKSRKEMLEFRRKMQMIFQDPYASLNPRVKVKDIIAEGIRIHGLAK 125
Query: 122 SDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS- 180
+ E ++ V LE+VGL+ +E G++PH+ SGGQ QRI P +IADE +S
Sbjct: 126 TPEETNKQVYDLLETVGLS-KEHAGRYPHEFSGGQRQRIGYRSCACCSPEFIIADEPISA 184
Query: 181 --MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEK 238
LD S + V+NLL + + + +FI HDL++ YISD+I +MY G +V+
Sbjct: 185 LDFLDVSIQAQVVNLLRQLQKEKNLTYLFIAHDLSMVKYISDRIGVMYFGKLVKLAFAND 244
Query: 239 VFDNPLHPYTKMLLESVP 256
++ PLHPYT+ LL ++P
Sbjct: 245 LYHAPLHPYTESLLSAIP 262
>sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TR
>gi|1486422|emb|CAA92400.1| (Z68203) OppD homologue
[Rhizobium sp.] >gi|2182648|gb|AAB91871.1| (AE000098)
Y4tR [Rhizobium sp. NGR234]
Length = 335
Score = 183 bits (461), Expect = 2e-45
Identities = 114/328 (34%), Positives = 170/328 (51%), Gaps = 27/328 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQV-RAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
+LL+V++L F G V RA+ V F +K GE++ +VGESG GK+ ILRL+
Sbjct: 11 LLLDVRDLETHF----YGEESVTRALGGVNFHVKSGEMLGIVGESGCGKSVTALSILRLL 66
Query: 60 -----KPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVF 114
K G+++FKG ++ + ++ + +FQDP S +P++ V R
Sbjct: 67 PKQTAKTVGGEVIFKGRNLLELSERQMREVRGNRIAMIFQDPMTSLSPVHTVGRQIAEAV 126
Query: 115 RTFLKNVSDVEKDELVRRALESVGL----NPREILGKFPHQLSGGQLQRILIARALLVEP 170
+ + V + E + +ALE + L +P L +PH++SGG QR +IA AL P
Sbjct: 127 QIHGR----VSRAEALEKALEMLRLVRIADPERRLNNYPHEMSGGMRQRAMIAMALACSP 182
Query: 171 SLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSI 230
LLIADE + LD + + +L L+ + +D GT+V+FITHDL + ++I+MY G I
Sbjct: 183 ELLIADEPTTALDVTIQAQILRLIVDLKDRMGTAVMFITHDLGVVAETCQRVIVMYAGRI 242
Query: 231 VEWGDTEKVFDNPLHPYTKMLLESVPD-----LNVKWEFKGIEPEREEGKVWELKGCKFA 285
VE +F P HPYT+ L+ SVPD + E G+ P E L GC FA
Sbjct: 243 VEQASVTDLFARPTHPYTRALMNSVPDRRRGRQSRLPEIPGVVPSLRE----PLVGCSFA 298
Query: 286 PRCSLAKDKCWKIRPEPVEVEKNHWVAC 313
RC A C + P E++ H AC
Sbjct: 299 ERCPFAIGVCREKMPVLSEIQPGHAAAC 326
>pir||H75117 peptide abc transporter ATP-binding protein PAB1874 - Pyrococcus
abyssi (strain Orsay) >gi|5458168|emb|CAB49657.1|
(AJ248285) PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN
[Pyrococcus abyssi]
Length = 329
Score = 183 bits (460), Expect = 2e-45
Identities = 113/325 (34%), Positives = 176/325 (53%), Gaps = 13/325 (4%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
+L+V+NLT F + G V+A++ V+F + +GE +LVGE+G GK+ + I +LI+
Sbjct: 8 ILQVRNLTVHFYT--YAGI-VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
Query: 62 ----TSGKILFKGEDIWSFDKDKLMNYYYKNVQA-----VFQDPFASFNPLYKVDRVFDL 112
G++L+ +D D KL + ++ +FQDP AS +PLY V
Sbjct: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
Query: 113 VFRTFLKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPS 171
K S E + L+SV + +P + +PH+LSGG QR++I + P
Sbjct: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
Query: 172 LLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIV 231
+LIADE + LD + + +L+LL + ++ + +VI ITH+L + +D++ +MY G IV
Sbjct: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
Query: 232 EWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLA 291
E G +++F NPLHPYT+ LL +VP+ K E P + GC+F PRC
Sbjct: 245 EIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKV 304
Query: 292 KDKCWKIRPEPVEVEKNHWVACHLY 316
C + PE E+E H+VACHLY
Sbjct: 305 MSICKEKVPELKEIEPGHFVACHLY 329
>pir||T03432 probable transport protein accC - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153179|gb|AAC17199.1| (AF010180) AccC
[Agrobacterium tumefaciens]
Length = 338
Score = 182 bits (458), Expect = 4e-45
Identities = 112/307 (36%), Positives = 179/307 (57%), Gaps = 17/307 (5%)
Query: 2 LLEVQNLTKIFT--SGLIGGYQVR-AVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRL 58
LL+ + +TK+F SGL V AV+++ + E V +VGESGSGK+T+G+L+L L
Sbjct: 5 LLQARGVTKVFRLKSGLFVKPSVHVAVNSIDLELAPRERVGVVGESGSGKSTLGRLLLGL 64
Query: 59 IKPTSGKILFKGEDIWSFDKD-KLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
T G++LF+G + D+ + + + K V Q+P ++ NP + + +
Sbjct: 65 TSTTEGEVLFEG--LAHTDRSARDWSTFRKETSLVQQNPLSALNPQMTIGE--QIAEAVW 120
Query: 118 LKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
+ V++ + L+ VGL+ ++ ++PHQ+SGGQ QR++IARAL+++P L++ DE
Sbjct: 121 VHRVANAGARDRAATMLDRVGLSSA-MMNRYPHQMSGGQRQRVVIARALILDPKLVVFDE 179
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTE 237
AVS LD S + V+ LL + + +FITHDL + ++ D+I++MY G +VE GD +
Sbjct: 180 AVSALDVSVQAQVVALLRQLWQELDLAYVFITHDLRIVRHLVDRIVVMYLGRVVETGDIK 239
Query: 238 KVFDNPLHPYTKMLLESVPDLNVKWEFKGIEP----EREEGKVWELKGCKFAPRCSLAKD 293
V+ P HPYT+ LL SVP ++ + IEP E + GKV + GC F RC A +
Sbjct: 240 SVYAWPRHPYTRALLASVPTMDP--TVRNIEPPIKGELDAGKV--MTGCAFRSRCPFAIE 295
Query: 294 KCWKIRP 300
+C K P
Sbjct: 296 RCAKETP 302
>gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola]
Length = 330
Score = 182 bits (456), Expect = 7e-45
Identities = 110/323 (34%), Positives = 175/323 (54%), Gaps = 18/323 (5%)
Query: 2 LLEVQNL-TKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI- 59
LLEV+NL T FT+ ++AV V F+I+ G+ + +VGESGSGK+ IL L+
Sbjct: 5 LLEVKNLHTYFFTNK----GTIKAVQGVDFTIEAGKTLGIVGESGSGKSITAFSILNLLE 60
Query: 60 ---KPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFD---LV 113
K G+I F G ++ + K ++ ++ +FQ+P S NP++++ R ++
Sbjct: 61 YPGKIVQGEINFGGINLVNLGKKEIRKIRGNDISMIFQEPMTSLNPVHRIGRQLSEPLIL 120
Query: 114 FRTFLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLL 173
+ K + +L+R NP ++ +P QLSGG QR++IA AL +P LL
Sbjct: 121 HQHMSKKEAWAAAIDLLREVKIP---NPENVVYNYPFQLSGGMRQRVMIAMALACKPRLL 177
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEW 233
IADE + LD + + + L+ + + H T+++FITHDL ++D + +MY G IVE
Sbjct: 178 IADEPTTALDVTIQAQIFKLMNDLKKKHNTAIMFITHDLGAIAELADDVAVMYTGEIVER 237
Query: 234 GDTEKVFDNPL---HPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSL 290
+ +FD HPY + LLES+P L+ + E+ + KGC+F+ RC
Sbjct: 238 APVDVIFDRQTQFSHPYKEGLLESIPLLDEEVEYLAQIQGSVPHPLKLPKGCRFSTRCEY 297
Query: 291 AKDKCWKIRPEPVEVEKNHWVAC 313
A +KC +PE VEVE+ H + C
Sbjct: 298 ATEKCRNEKPELVEVEEGHLIRC 320
>gb|AAK43145.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 267
Score = 181 bits (455), Expect = 9e-45
Identities = 104/261 (39%), Positives = 157/261 (59%), Gaps = 9/261 (3%)
Query: 2 LLEVQNLTKIFT--SGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
L+E+ ++ K F G+ G + +V I++ EIV +VG SG GKT I +I+ L+
Sbjct: 5 LIELIHVYKDFIVRKGVFGKEHRPGIWDVNMDIRKNEIVGMVGGSGGGKTVIAWMIVGLL 64
Query: 60 KPTSGKILFK--GEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
KPT G I++ G D+ +K K + Y +VQ VFQDP++S +P + V + + +
Sbjct: 65 KPTKGSIIYTPMGLDVTKANK-KQLKQYRADVQLVFQDPYSSLDPAHTVKWHIERPLKIY 123
Query: 118 LKNVSDVEKDELVRRALESVGLNPRE-ILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
K D+E E ++ L V L P E L K+P QLSGGQ QR+ +AR L + P +LIAD
Sbjct: 124 -KYRGDIE--ERIKELLREVALTPPEDFLNKYPFQLSGGQRQRVYLARVLALNPKVLIAD 180
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
E VS +DAS R +L+L RD G S+++ITHD+A Y++D++ ++ G IVE GD
Sbjct: 181 EPVSNVDASIRASLLDLFKRLRDEKGISIMYITHDIATIGYVADRVYVVKNGRIVEEGDV 240
Query: 237 EKVFDNPLHPYTKMLLESVPD 257
+ +P H YT++L+E+VPD
Sbjct: 241 GTIISHPKHEYTRLLIEAVPD 261
>sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|2125993|pir||S61404 dipeptide transport protein dppD
- Escherichia coli >gi|349228|gb|AAA23705.1| (L08399)
peripheral membrane protein [Escherichia coli]
>gi|466680|gb|AAB18519.1| (U00039) dppD [Escherichia
coli] >gi|1789963|gb|AAC76566.1| (AE000431) putative
ATP-binding component of dipeptide transport system
[Escherichia coli K12]
Length = 327
Score = 181 bits (455), Expect = 9e-45
Identities = 105/297 (35%), Positives = 150/297 (50%), Gaps = 6/297 (2%)
Query: 23 RAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI----KPTSGKILFKGEDIWSFDK 78
RAVD +++S+K+GE+V +VGESGSGK+ I+ LI + + K+ F G+D+ +
Sbjct: 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80
Query: 79 DKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVG 138
+ N V +FQDP S NP Y V + + + L VG
Sbjct: 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAID-LLNQVG 139
Query: 139 L-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEF 197
+ +P L +PHQLSGG QR++IA A+ P LLIADE + LD + + ++ LL E
Sbjct: 140 IPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL 199
Query: 198 RDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPD 257
+ +++ ITHDLAL + KII+MY G +VE GD +F P HPYT+ LL ++P+
Sbjct: 200 QQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQALLRALPE 259
Query: 258 LNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACH 314
E P GK GC PRC A D+C P + CH
Sbjct: 260 FAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCH 316
>gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 358
Score = 180 bits (453), Expect = 1e-44
Identities = 115/321 (35%), Positives = 172/321 (52%), Gaps = 19/321 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LLEV++L F + G +V+A+ V F + +GE +++VGESGSGK+ + I++LI
Sbjct: 7 LLEVKDLAISFKTY---GGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPM 63
Query: 62 TSG-----KILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
G +ILF+G+D+ + ++ N K + +FQDP S NP KV + V
Sbjct: 64 PPGYFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFK 123
Query: 117 FLKNVSDVEKDELVRRALESVGLN-PREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
K + K V LE VG+ P + + +FPH+ SGG QR++IA AL P LLIA
Sbjct: 124 HEKISKEAAKKRAVE-LLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIA 182
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE + LD + + +L L+ + + TS+IFITHDL + ++D++ +MY G IVE G
Sbjct: 183 DEPTTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGT 242
Query: 236 TEKVFDNPLHPYTKMLLESVPDLNVKWE-----FKGIEPEREEGKVWELKGCKFAPRCSL 290
+++F +P HPYT LL S+P L E G P+ KG FA R S
Sbjct: 243 VDEIFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPP----KGDAFALRSSY 298
Query: 291 AKDKCWKIRPEPVEVEKNHWV 311
A ++ P +V H+V
Sbjct: 299 AMKIDFEQEPPMFKVSDTHYV 319
>pir||D38447 sporulation initiation protein spo0KD - Bacillus subtilis
>gi|580898|emb|CAA39790.1| (X56347) OppD [Bacillus
subtilis]
Length = 336
Score = 180 bits (453), Expect = 1e-44
Identities = 115/321 (35%), Positives = 172/321 (52%), Gaps = 19/321 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LLEV++L F + G +V+A+ V F + +GE +++VGESGSGK+ + I++LI
Sbjct: 7 LLEVKDLAISFKTY---GGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPM 63
Query: 62 TSG-----KILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
G +ILF+G+D+ + ++ N K + +FQDP S NP KV + V
Sbjct: 64 PPGYFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFK 123
Query: 117 FLKNVSDVEKDELVRRALESVGLN-PREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
K + K V LE VG+ P + + +FPH+ SGG QR++IA AL P LLIA
Sbjct: 124 HEKISKEAAKKRAVE-LLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIA 182
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE + LD + + +L L+ + + TS+IFITHDL + ++D++ +MY G IVE G
Sbjct: 183 DEPTTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGT 242
Query: 236 TEKVFDNPLHPYTKMLLESVPDLNVKWE-----FKGIEPEREEGKVWELKGCKFAPRCSL 290
+++F +P HPYT LL S+P L E G P+ KG FA R S
Sbjct: 243 VDEIFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPP----KGDAFALRSSY 298
Query: 291 AKDKCWKIRPEPVEVEKNHWV 311
A ++ P +V H+V
Sbjct: 299 AMKIDFEQEPPMFKVSDTHYV 319
>sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|7442529|pir||B69669 oligopeptide transport
ATP-binding protein oppD - Bacillus subtilis
>gi|2633500|emb|CAB13003.1| (Z99110) oligopeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 358
Score = 180 bits (453), Expect = 1e-44
Identities = 115/321 (35%), Positives = 172/321 (52%), Gaps = 19/321 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LLEV++L F + G +V+A+ V F + +GE +++VGESGSGK+ + I++LI
Sbjct: 7 LLEVKDLAISFKTY---GGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPM 63
Query: 62 TSG-----KILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
G +ILF+G+D+ + ++ N K + +FQDP S NP KV + V
Sbjct: 64 PPGYFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFK 123
Query: 117 FLKNVSDVEKDELVRRALESVGLN-PREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
K + K V LE VG+ P + + +FPH+ SGG QR++IA AL P LLIA
Sbjct: 124 HEKISKEAAKKRAVE-LLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIA 182
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE + LD + + +L L+ + + TS+IFITHDL + ++D++ +MY G IVE G
Sbjct: 183 DEPTTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGT 242
Query: 236 TEKVFDNPLHPYTKMLLESVPDLNVKWE-----FKGIEPEREEGKVWELKGCKFAPRCSL 290
+++F +P HPYT LL S+P L E G P+ KG FA R S
Sbjct: 243 VDEIFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPP----KGDAFALRSSY 298
Query: 291 AKDKCWKIRPEPVEVEKNHWV 311
A ++ P +V H+V
Sbjct: 299 AMKIDFEQEPPMFKVSDTHYV 319
>pir||F71483 probable dipeptide transport - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3329143|gb|AAC68285.1| (AE001339) ABC
Transport ATPase [Chlamydia trachomatis]
Length = 321
Score = 180 bits (452), Expect = 2e-44
Identities = 99/319 (31%), Positives = 174/319 (54%), Gaps = 8/319 (2%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LL+V+NL+ + AVD+++F + G+ ++++GESGSGK+ + +++L+
Sbjct: 6 LLQVKNLSVSLNRNRVS---FLAVDSLSFDVFPGQTLAIIGESGSGKSITAQSLMQLLPE 62
Query: 62 T----SGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
SG+ LF E++ + + +FQ+P ASF+P++ +++ F V RT
Sbjct: 63 ENFSLSGEALFNKENLLDRKNTNAKVLFGSKISMIFQNPLASFDPVFTIEQQFHEVIRTH 122
Query: 118 LKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
L + + ++++ E+ +P + +PH+LSGG LQR+ IA LL P LLIADE
Sbjct: 123 LGISNKMAHEQMLAVLRETGFQDPERCIKLYPHELSGGMLQRMAIAMTLLTSPDLLIADE 182
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTE 237
+ LD S + +L LL + G S++ ITHD+ + ++D + ++Y G + E+ +
Sbjct: 183 PTTALDVSVQYQILQLLKTLQKKTGMSLLIITHDMGVVAEMADDVFVLYAGRMAEYSSVQ 242
Query: 238 KVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWK 297
++F +P HPYT+ LL S P + F I + KGC ++PRC A+ C++
Sbjct: 243 EIFHSPAHPYTEDLLASRPSQYRQQTFVPIAGQPPHYTSLP-KGCCYSPRCRKAQPICFE 301
Query: 298 IRPEPVEVEKNHWVACHLY 316
P+ + + +H V C LY
Sbjct: 302 KSPDSLSLNDHHRVRCWLY 320
>pir||D72393 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980803|gb|AAD35391.1|AE001712_4 (AE001712)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 180 bits (452), Expect = 2e-44
Identities = 105/304 (34%), Positives = 166/304 (54%), Gaps = 11/304 (3%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP----TSGKILFK--GED--I 73
+RAVDNV+ E E+ + GESG GK+T+ K++ IKP G+++FK GE+ I
Sbjct: 25 IRAVDNVSLHFFENEVYGIAGESGCGKSTLLKVLFGEIKPPLKLVDGEVVFKLDGEEYRI 84
Query: 74 WSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRA 133
S D+L +K V V Q + NP+ K+ R+F V ++S E +
Sbjct: 85 NSMSLDQLKKIRWKYVSYVPQGSMSVLNPVRKIRRIFLDVIEEHT-SMSREEAFSRIESY 143
Query: 134 LESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNL 193
E++GL P +L +PHQLSGG QR+ IA A ++ P ++ ADE + LD + V+ L
Sbjct: 144 FEALGL-PVRVLDSYPHQLSGGMRQRVTIALATVLNPKVIFADEPTTALDVVVQRGVIQL 202
Query: 194 LGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLE 253
L + +++ +THD+ + +++ +I +MY G ++E +T ++F NPLHPYT+ L+
Sbjct: 203 LKKIHKEQKNTLVIVTHDMGVHAHLATRIGVMYAGRLIEEAETHEIFKNPLHPYTRFLIN 262
Query: 254 SVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVAC 313
S+P + +G P GC F PRC +A C ++ P+ +EV +NH VAC
Sbjct: 263 SLPRFGDRSRKEG-TPGSPPSLANLPSGCPFHPRCPIADQICMEMEPDLIEVARNHKVAC 321
Query: 314 HLYG 317
G
Sbjct: 322 WKVG 325
>emb|CAC16447.1| (AL450165) putative oligopeptide ABC transporter ATP-binding
protein [Streptomyces coelicolor]
Length = 316
Score = 180 bits (452), Expect = 2e-44
Identities = 102/265 (38%), Positives = 160/265 (59%), Gaps = 16/265 (6%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LLE+ L K F G + AVD+V+ ++EGE ++LVGESG GKTT+ +L+L L++P
Sbjct: 25 LLELDGLRKEFG----GRHPNVAVDDVSLEVREGETMALVGESGCGKTTLTRLLLGLLEP 80
Query: 62 TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNV 121
T+G + F G+D+ + +L + +Q V QDP++S NP R+ D+V + +
Sbjct: 81 TAGSVRFDGQDLAALTASQLRGVR-RQMQVVLQDPYSSMNPRM---RITDIVAEPLVTHD 136
Query: 122 SDVE-------KDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLI 174
+ + V LE+VGL+ I ++PH+ SGGQ QR+ IARAL + P LL+
Sbjct: 137 PEARGRRARARNRQRVGELLEAVGLDAG-IQDRYPHEFSGGQRQRVSIARALALHPRLLV 195
Query: 175 ADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWG 234
DE S LD S + VL+LL + + G + +F++H+LA+ ++D++ +M RGS+VE G
Sbjct: 196 LDEPTSALDVSVQATVLDLLADLQQRLGLTYVFVSHNLAVVAQVADRVAVMSRGSLVEVG 255
Query: 235 DTEKVFDNPLHPYTKMLLESVPDLN 259
+ V P HPYT+ LL++VP L+
Sbjct: 256 EAAAVLRTPRHPYTRQLLDAVPVLD 280
>sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD >gi|98274|pir||S16650
dipeptide transport ATP-binding protein dppD - Bacillus
subtilis >gi|48807|emb|CAA40005.1| (X56678) dciAD
[Bacillus subtilis] >gi|2632016|emb|CAA05575.1|
(AJ002571) DppD [Bacillus subtilis]
>gi|2633649|emb|CAB13152.1| (Z99110) dipeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 335
Score = 180 bits (451), Expect = 3e-44
Identities = 118/325 (36%), Positives = 172/325 (52%), Gaps = 20/325 (6%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
+L VQNL FT+ G V+AV V+F + +GE ++VGESG GK+ + I+ L+ P
Sbjct: 4 VLSVQNLHVSFTTY---GGTVQAVRGVSFDLYKGETFAIVGESGCGKSVTSQSIMGLLPP 60
Query: 62 -----TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKV-DRVFDLVFR 115
T G+ILFK +D+ ++ ++ +FQDP + NP V D++ + + R
Sbjct: 61 YSAKVTDGRILFKNKDLCRLSDKEMRGIRGADISMIFQDPMTALNPTLTVGDQLGEALLR 120
Query: 116 TFLKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLI 174
K +S + V L VG+ +P E L ++PHQ SGG QRI+IA AL+ EP +LI
Sbjct: 121 H--KKMSKKAARKEVLSMLSLVGIPDPGERLKQYPHQFSGGMRQRIVIAMALICEPDILI 178
Query: 175 ADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWG 234
ADE + LD + + +L L E + SVI ITHDL + ++D++ +MY G + E G
Sbjct: 179 ADEPTTALDVTIQAQILELFKEIQRKTDVSVILITHDLGVVAQVADRVAVMYAGKMAEIG 238
Query: 235 DTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWEL----KGCKFAPRCSL 290
+ +F P HPYTK LL SVP L + G E +G +L GC FA RC
Sbjct: 239 TRKDIFYQPQHPYTKGLLGSVPRL----DLNGAELTPIDGTPPDLFSPPPGCPFAARCPN 294
Query: 291 AKDKCWKIRPEPVEVEKNHWVACHL 315
C ++ P +H V C L
Sbjct: 295 RMVVCDRVYPGQTIRSDSHTVNCWL 319
>pir||F72617 probable dipeptide transport system ATP-binding protein APE1399 -
Aeropyrum pernix (strain K1) >gi|5105082|dbj|BAA80396.1|
(AP000061) 333aa long hypothetical dipeptide transport
system ATP-binding protein [Aeropyrum pernix]
Length = 333
Score = 180 bits (451), Expect = 3e-44
Identities = 116/325 (35%), Positives = 178/325 (54%), Gaps = 19/325 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
++EV+NL K++ G V+A+++V+F I GE LVGE+G GK+ + + RLI P
Sbjct: 9 IIEVENL-KVYFYTYAG--IVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYP 65
Query: 62 ----TSGKILFKGE-----DIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDL 112
GKI + E DI S D+ +L + + +FQDP A+ +PLY +
Sbjct: 66 PGRIVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQ--- 122
Query: 113 VFRTFLKNVSDVEKDELVRRA---LESVGL-NPREILGKFPHQLSGGQLQRILIARALLV 168
V T L + E VRRA L++V + +P + + +PH+LSGG QR +I +L
Sbjct: 123 VGETMLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSN 182
Query: 169 EPSLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRG 228
P LLIADE + LD + + +++LL + + HG +++ ITH+L L D++ +MY G
Sbjct: 183 RPKLLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAG 242
Query: 229 SIVEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRC 288
+IVE +++F NPLHPYT+ L+ +VP+ K E P + GC+F PRC
Sbjct: 243 NIVEEAPVDELFSNPLHPYTRALIRAVPNPLAKIENLEHIPGTVPNLITPPPGCRFHPRC 302
Query: 289 SLAKDKCWKIRPEPVEVEKNHWVAC 313
LA D+C + +P E H AC
Sbjct: 303 PLAFDRCSREKPLLKEYSPGHKAAC 327
>gi|10954942 Probable accC [Agrobacterium tumefaciens]
>gi|6498295|dbj|BAA87747.1| (AB016260) Probable accC
[Agrobacterium tumefaciens]
Length = 339
Score = 179 bits (449), Expect = 4e-44
Identities = 114/308 (37%), Positives = 182/308 (59%), Gaps = 18/308 (5%)
Query: 2 LLEVQNLTKIFT--SGLIGGYQVR-AVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRL 58
LL+ + +TK+F SGL V AV+++ + E VS+V ESGSGK+T+G+L+L L
Sbjct: 5 LLQARGVTKVFRLKSGLFVKPSVHVAVNSIDLELAPRERVSVVRESGSGKSTLGRLLLGL 64
Query: 59 IKPTSGKILFKGEDIWSFDKD-KLMNYYYKNVQAVFQDPFASFNPLYKV-DRVFDLVFRT 116
T G++LF+G + D+ + + + K V Q+P ++ NP + +++ + V+
Sbjct: 65 TSTTEGEVLFEG--LAHTDRSARDWSTFRKETSLVQQNPLSALNPQMTIGEQIAEAVWVH 122
Query: 117 FLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
+ N + + L+ VGL+ ++ ++PHQ+SGGQ QR++IARAL+++P L+I D
Sbjct: 123 RVANRAGAR--DRAATMLDRVGLSSA-MMNRYPHQMSGGQRQRVVIARALILDPKLVIFD 179
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
EAVS LD S + V+ LL + + +FITHDL + ++ D+I++MY G +VE GD
Sbjct: 180 EAVSALDVSVQAQVVALLRQLWQELDLAYVFITHDLRIVRHLVDRIVVMYLGRVVETGDI 239
Query: 237 EKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEP----EREEGKVWELKGCKFAPRCSLAK 292
+ V+ P HPYT+ LL SVP ++ + IEP E + GKV + GC F RC A
Sbjct: 240 KSVYAWPRHPYTRALLASVPTMDP--TVRNIEPPIKGELDAGKV--MTGCAFRSRCPFAI 295
Query: 293 DKCWKIRP 300
++C K P
Sbjct: 296 ERCAKETP 303
>gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis]
Length = 347
Score = 179 bits (449), Expect = 4e-44
Identities = 108/322 (33%), Positives = 177/322 (54%), Gaps = 14/322 (4%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI-- 59
LLEV++L F + +V+AV VTF +K+GE +++VGESGSGK+ K ++ LI
Sbjct: 4 LLEVKDLQVSFDTH---AGEVQAVRGVTFDLKKGETLAIVGESGSGKSVTSKALMGLIPN 60
Query: 60 ---KPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
+ +G+I+F+G D+ + ++ K++ +FQDP S NP + + +
Sbjct: 61 PPGRIKNGEIVFEGRDLTKLTEKEMQQVRGKDIAMIFQDPMTSLNPTMTIG---NQIMEG 117
Query: 117 FLKN--VSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLL 173
+K+ +S + ++ ++ VG+ NP L ++PHQ SGG QR++IA AL P LL
Sbjct: 118 LIKHQGMSKADARKVALELIDLVGIPNPEARLKQYPHQFSGGMRQRVVIAMALACNPKLL 177
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEW 233
IADE + LD + + +L L+ + + ++IFITHDL + ++D++ +MY G +VE
Sbjct: 178 IADEPTTALDVTIQAQILELMKDIQQKTEAAIIFITHDLGVVANVADRVAVMYAGKVVEI 237
Query: 234 GDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKD 293
G +++F NP HPYT L+ S+P L+ E P + KG FAPR A
Sbjct: 238 GTVDEIFYNPKHPYTWGLIASMPSLDGSEEELYAIPGTPPDLLKPPKGDAFAPRNPQALK 297
Query: 294 KCWKIRPEPVEVEKNHWVACHL 315
+++ P +V H+ A L
Sbjct: 298 IDFEMDPPLFKVSDTHYAATWL 319
>pir||C81746 peptide ABC transporter, ATP-binding protein TC0062 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190098|gb|AAF38947.1| (AE002273) peptide ABC
transporter, ATP-binding protein [Chlamydia muridarum]
Length = 321
Score = 178 bits (448), Expect = 6e-44
Identities = 102/321 (31%), Positives = 172/321 (52%), Gaps = 12/321 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LL+V+NL+ + V++++F++ G+ ++++GESGSGK+ + +++L+
Sbjct: 6 LLQVKNLSVSLNRNTVS---FPVVEDLSFNVFPGQTLAIIGESGSGKSITAQSLMQLLPE 62
Query: 62 T----SGKILFKGEDIWSFDKDKLMN--YYYKNVQAVFQDPFASFNPLYKVDRVFDLVFR 115
SG+ E++ D+ L++ + + +FQ+P ASF+P++ +++ F V R
Sbjct: 63 EYFSISGEAFLHKENL--LDRKNLLSKTLFGSKMAMIFQNPLASFDPVFTIEQQFHEVIR 120
Query: 116 TFLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
T L V +++V E+ +P + +PH+LSGG LQR+ IA LL P LLIA
Sbjct: 121 THLDLTKKVAHEQIVTVLRETGFQDPERCIKLYPHELSGGMLQRMAIAMTLLTSPDLLIA 180
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE + LD S + +L LL + G S++ ITHD+ + ++D + ++Y G + E+
Sbjct: 181 DEPTTALDVSVQYQILQLLKTLQKKTGMSLLVITHDMGVVAEMADDVFVLYAGRMAEYSS 240
Query: 236 TEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKC 295
+ +F +P HPYTK LL S P K F I KGC ++PRC A C
Sbjct: 241 VQDIFHSPAHPYTKDLLASRPSQYKKQTFVPISGHPPHYTNLP-KGCCYSPRCQKALPIC 299
Query: 296 WKIRPEPVEVEKNHWVACHLY 316
+K P + + +H V C LY
Sbjct: 300 YKQSPHAISLNDHHHVRCWLY 320
>dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 178 bits (448), Expect = 6e-44
Identities = 106/310 (34%), Positives = 165/310 (53%), Gaps = 22/310 (7%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI----KPTSGKILFKGEDIWSFD 77
V +V+ V+F +K GE V++VGESG GK+ I+ L+ K G I F G+D+ +
Sbjct: 23 VPSVNGVSFEVKHGETVAVVGESGCGKSVTSLSIMGLVRSPGKIVGGDIRFNGQDLTTIS 82
Query: 78 KDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALE-- 135
+ + + +FQ+P S NPL+ + V + V K+E ++ +E
Sbjct: 83 EREYRKLRGNELSMIFQEPLTSLNPLFTIGNQLGEV----ILQHQQVTKEEAKQKGIEML 138
Query: 136 -SVGLNPR--EILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLN 192
VG+ PR ++ +PHQLSGG QR++IA AL EP LLIADE + LD + + +L
Sbjct: 139 KKVGI-PRAEQVYRSYPHQLSGGMRQRVMIAMALACEPKLLIADEPTTALDVTIQAQILQ 197
Query: 193 LLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLL 252
L+ + + T+++ ITHDL + ++D +I+MY G +VE D +F P HPYT+ LL
Sbjct: 198 LMRKLVKENDTAILLITHDLGVVAEMADTVIVMYAGQVVEQADVFTLFATPAHPYTQGLL 257
Query: 253 ESVPDLNVKWE----FKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKN 308
S P+++ E +G P E KGC+F PRC A ++C P ++ +
Sbjct: 258 ASTPNIHASGEKLQSIEGTVPTHETMP----KGCRFFPRCLHATEQCVHQEPPLMKTGRG 313
Query: 309 HWVACHLYGG 318
V C L+ G
Sbjct: 314 QHVRCWLFDG 323
>dbj|BAA03322.1| (D14438) ATP-binding protein [Synechococcus elongatus]
Length = 531
Score = 177 bits (444), Expect = 2e-43
Identities = 106/257 (41%), Positives = 149/257 (57%), Gaps = 11/257 (4%)
Query: 2 LLEVQNLTKIFTSG--LIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
LL V+NL + + G L +RAVD V +++ GE + LVGESG GK+T+ +LIL+LI
Sbjct: 275 LLRVENLQRHYRLGGWLQPQTTIRAVDGVDLTLRRGETLGLVGESGCGKSTLSRLILQLI 334
Query: 60 KPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFD---LVFRT 116
+G ++F G + +L +++Q +FQDP A NP V + L+ R
Sbjct: 335 PANAGDVVFLGRSLTQLSAAQLRRTR-RDLQMIFQDPHACLNPKMTVAQNLLEPLLIHRL 393
Query: 117 FLKNVSDVEKDELVRRALESVGLNPREI-LGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
K + E VR L V L P E L ++PH LSGGQ QR+ IARAL+ P L+I
Sbjct: 394 MAKRAAQ----ERVREMLMQVELTPAEAYLHRYPHALSGGQRQRVAIARALITHPQLVIC 449
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE VSMLDA + VL L+ E ++ + +FITHDLA+ D++ +MYRG IVE
Sbjct: 450 DEPVSMLDAHIQAQVLALMQELKEQLQLTYLFITHDLAIARRFCDRVAVMYRGKIVELAP 509
Query: 236 TEKVFDNPLHPYTKMLL 252
T ++F +P HPYT+ LL
Sbjct: 510 TAQLFAHPQHPYTQKLL 526
Score = 152 bits (379), Expect = 7e-36
Identities = 90/254 (35%), Positives = 134/254 (52%), Gaps = 4/254 (1%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LLE++ L + VD V+F + GE LVG SG GK+TIGK ILRL+ P
Sbjct: 4 LLELRELRVAYPRMETSSAATFVVDGVSFCVAAGERFGLVGASGCGKSTIGKAILRLLPP 63
Query: 62 TS---GKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL 118
S G+I +G+ + +L + + VFQDP NPL + D + R+
Sbjct: 64 GSQIFGQIALQGQSLLGLSASQLQRLRGEQIGLVFQDPMTRLNPLMSIYDHCDELLRSHW 123
Query: 119 KNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEA 178
+ S ++ + + LE V + P L ++PH+LSGG QR+ IA ALL+ P L+IADE
Sbjct: 124 FSWSRPQRRQRIIEVLERVKI-PANRLHQYPHELSGGMRQRVAIALALLLNPPLIIADEP 182
Query: 179 VSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEK 238
+ LD + ++L L ++ I+HDLAL D++ +M++G I+E G +
Sbjct: 183 TTALDVTVAAEILEELTRLCQQEQRGLLLISHDLALMAKYCDRLAVMHQGKIMELGAAHQ 242
Query: 239 VFDNPLHPYTKMLL 252
V P HPYT+ LL
Sbjct: 243 VLQRPQHPYTQSLL 256
>pir||S75333 oligopeptide transport protein oppF - Synechocystis sp. (strain
PCC 6803) >gi|1652324|dbj|BAA17247.1| (D90904)
oligopeptide transport ATP-binding protein OppF
[Synechocystis sp.]
Length = 650
Score = 177 bits (444), Expect = 2e-43
Identities = 101/259 (38%), Positives = 160/259 (60%), Gaps = 5/259 (1%)
Query: 2 LLEVQNLTKIF-TSGLIGGYQV-RAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
LLEVQNLT + GL G V +AV++V+F + GE + LVGESG GK+T+ + +LRL
Sbjct: 381 LLEVQNLTVSYGQGGLFGKKSVFKAVNDVSFQVYPGETLGLVGESGCGKSTLARALLRLT 440
Query: 60 KPTSGKILFKGEDIWSF-DKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL 118
+G+I+F G+++ + +K + + +Q +FQ+P+ S NP + R
Sbjct: 441 PIQTGRIIFDGQNVAALPEKSQQWRRLRREMQIIFQNPYNSLNPRMTIGRAIQEPLIIHE 500
Query: 119 KNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEA 178
S ++ + V LE VG++P + ++PH+LSGGQ QRI IARAL + P +I DE+
Sbjct: 501 PKQSTKQQRQRVAELLERVGISP-QWFNRYPHELSGGQRQRICIARALALNPRFIICDES 559
Query: 179 VSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT-E 237
VS LD S + VLNLL E + + + IFI+HDL++ ++ D+I++M RG + E +T +
Sbjct: 560 VSALDVSVQAQVLNLLKELQRDLQLTYIFISHDLSVVRFMGDRIMVMNRGQLAEPINTAQ 619
Query: 238 KVFDNPLHPYTKMLLESVP 256
++ +NP YTK L++S+P
Sbjct: 620 EIIENPQSAYTKKLIQSIP 638
Score = 136 bits (339), Expect = 3e-31
Identities = 93/284 (32%), Positives = 144/284 (49%), Gaps = 48/284 (16%)
Query: 24 AVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI-KP----TSGKILFKGE------D 72
AV V F ++ GEI+ +VGESGSGK+ I+ L+ KP S +I F + +
Sbjct: 59 AVKGVDFELERGEILGIVGESGSGKSVTSLGIMGLVPKPGWVEPSSEIDFFAQAQSSPVN 118
Query: 73 IWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL-KNVSDVEKDELVR 131
+ + + Y + +FQ+P +S NP+Y + F ++ L +NV+ E
Sbjct: 119 LVALPEGDKRQYRGGKIAMIFQEPMSSLNPVYTIG--FQIIEAIRLHQNVTQEEAQNQAI 176
Query: 132 RALESVGLNPRE---------------------------------ILGKFPHQLSGGQLQ 158
L+ V + P++ L ++PH+LSGGQLQ
Sbjct: 177 ALLQEVRVLPKDEVLEEEFLAQEQAQPRGKVTQNLASYIQQRKQSFLKRYPHELSGGQLQ 236
Query: 159 RILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNH-GTSVIFITHDLALGYY 217
R++IA A+ P LLIADE + LD + + ++L LL + H S+IFI+HDL +
Sbjct: 237 RVMIAMAISANPRLLIADEPTTALDVTVQAEILRLLRDLCKQHQEMSLIFISHDLGVINE 296
Query: 218 ISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLNVK 261
I+D++ +MYRG IVE G E++ +P HPYTK LL P L ++
Sbjct: 297 IADRVAVMYRGEIVEQGLKEQILHSPQHPYTKGLLACRPRLEIQ 340
>pir||T34759 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402246|emb|CAA20182.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 365
Score = 177 bits (444), Expect = 2e-43
Identities = 109/312 (34%), Positives = 168/312 (52%), Gaps = 22/312 (7%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP---------TSGKILFKGED 72
V++VD ++F +++G+ + +VGESGSGK+ I+ L SG+I G +
Sbjct: 41 VKSVDGLSFQLEKGKTLGIVGESGSGKSVTSLGIMGLHTAGQYGKRKARISGEIWLDGTE 100
Query: 73 IWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRR 132
+ S D D + + + +FQDP ++ +P Y + + +R K V+K RR
Sbjct: 101 LLSADPDHVRKLRGREMAMIFQDPLSALHPYYTIGQQIVEAYRIHHK----VDKKTAKRR 156
Query: 133 ALES---VGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRI 188
A+E VG+ P + + +PH+ SGG QR +IA +L+ P LLIADE + LD + +
Sbjct: 157 AVEMLDRVGIPQPDKRVDSYPHEFSGGMRQRAMIAMSLVNNPELLIADEPTTALDVTVQA 216
Query: 189 DVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYT 248
+L+L+ + + G++VI ITHDL + ++D +++MY G VE G EKVF P HPYT
Sbjct: 217 QILDLIRDLQKEFGSAVIVITHDLGVVAELADDLLVMYGGRCVERGPAEKVFYEPRHPYT 276
Query: 249 KMLLESVPDLNVKWEFKGIEPEREEGKVWEL-KGCKFAPRCSLA----KDKCWKIRPEPV 303
LL S+P L+ + + I + + L GC F PRC A D +RPE
Sbjct: 277 WGLLGSMPRLDRDQQERLIPVKGSPPSLINLPSGCAFNPRCPYADVPKDDVTRTVRPELT 336
Query: 304 EVEKNHWVACHL 315
EV HW ACH+
Sbjct: 337 EVGSKHWAACHM 348
>gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocytogenes]
Length = 358
Score = 176 bits (442), Expect = 3e-43
Identities = 111/320 (34%), Positives = 171/320 (52%), Gaps = 10/320 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LLEV++L F + +V+A+ V F + +GE +++VGESGSGK+ K I+RL+
Sbjct: 4 LLEVKDLNISFHTY---AGEVKAIRGVNFDLYKGETLAIVGESGSGKSVTTKSIMRLLPE 60
Query: 62 -----TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
SG+ILF G DI + ++ K++ +FQDP S NP + +
Sbjct: 61 GNSEIKSGQILFNGMDIAKAHEKQMQKIRGKDIAMIFQDPMTSLNPTMTIGKQISEPLIK 120
Query: 117 FLKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
K +S E + R L+ VG+ N E + ++PHQ SGG QR++IA +L P +LIA
Sbjct: 121 HQK-ISKHEAHKTALRLLQLVGIANAEERIKQYPHQFSGGMRQRVVIAISLACNPQILIA 179
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE + LD + + +L+L+ + + TS+IFITHDL + ++D++ +MY G IVE G
Sbjct: 180 DEPTTALDVTIQAQILDLMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYGGKIVEIGT 239
Query: 236 TEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKC 295
+++F NP HPYT L+ S+P L+ E + P + KG FA R A
Sbjct: 240 VDEIFYNPQHPYTWGLISSMPTLDTDDEELFVIPGTPPDLLHPPKGDAFAARNKYAMQID 299
Query: 296 WKIRPEPVEVEKNHWVACHL 315
+ P +V H+ A L
Sbjct: 300 LEEEPPLFKVSDTHYAATWL 319
>dbj|BAA14778.1| (D90763) Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli] >gi|1805527|dbj|BAA16041.1| (D90852)
Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli]
Length = 337
Score = 176 bits (441), Expect = 4e-43
Identities = 106/303 (34%), Positives = 161/303 (52%), Gaps = 8/303 (2%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LL V++L F++ V AV+++ FS++ GE + +VGESGSGK+ ++ L+
Sbjct: 19 LLNVKDLRVTFSTP---DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAA 75
Query: 62 TS---GKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL 118
G F G +I + + +L + + +FQDP S NP +V V
Sbjct: 76 NGRIGGSATFNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLH- 134
Query: 119 KNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
KN+S E E R L++V + R+ + +PH+ SGG QR++IA ALL P LLIADE
Sbjct: 135 KNMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADE 194
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTE 237
+ LD + + ++ LL E + T++I ITHDL + I DK+++MY G +E+G+
Sbjct: 195 PTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVMYAGRTMEYGNAR 254
Query: 238 KVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWK 297
VF P+HPY+ LL +VP L+ + E P + KGC F PRC A + C
Sbjct: 255 DVFYQPVHPYSIGLLNAVPRLDAEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSS 314
Query: 298 IRP 300
P
Sbjct: 315 APP 317
>sp|P76027|OPPD_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|7442530|pir||A64872 oligopeptide transport
ATP-binding protein oppD - Escherichia coli
>gi|1787499|gb|AAC74328.1| (AE000223) homolog of
Salmonella ATP-binding protein of oligopeptide ABC
transport system [Escherichia coli K12]
Length = 337
Score = 176 bits (441), Expect = 4e-43
Identities = 106/303 (34%), Positives = 161/303 (52%), Gaps = 8/303 (2%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LL V++L F++ V AV+++ FS++ GE + +VGESGSGK+ ++ L+
Sbjct: 19 LLNVKDLRVTFSTP---DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAA 75
Query: 62 TS---GKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL 118
G F G +I + + +L + + +FQDP S NP +V V
Sbjct: 76 NGRIGGSATFNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLH- 134
Query: 119 KNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
KN+S E E R L++V + R+ + +PH+ SGG QR++IA ALL P LLIADE
Sbjct: 135 KNMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADE 194
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTE 237
+ LD + + ++ LL E + T++I ITHDL + I DK+++MY G +E+G+
Sbjct: 195 PTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVMYAGRTMEYGNAR 254
Query: 238 KVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWK 297
VF P+HPY+ LL +VP L+ + E P + KGC F PRC A + C
Sbjct: 255 DVFYQPVHPYSIGLLNAVPRLDAEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSS 314
Query: 298 IRP 300
P
Sbjct: 315 APP 317
>gb|AAD48154.1|AF086618_1 (AF086618) ABC transporter homolog [Loofah witches'-broom
phytoplasma]
Length = 315
Score = 175 bits (440), Expect = 5e-43
Identities = 109/318 (34%), Positives = 181/318 (56%), Gaps = 24/318 (7%)
Query: 1 MLLEVQNLTKIFTSGLI---GGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILR 57
+L+E +NL+K F + ++A D+++ SI +G+ +++VG GSGK+T+G+ +L+
Sbjct: 11 ILIECKNLSKFFFRKKLFAKSSIFLKANDDISLSIHKGQTLAVVG--GSGKSTLGQTLLQ 68
Query: 58 LIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFD--LVFR 115
L K TSGK+++ E L K++Q +FQ+P+ S NP + + L+
Sbjct: 69 LEKSTSGKVIYYKEQ----QSINLSELSTKDLQIIFQNPYLSLNPKILISDIIGEGLLIH 124
Query: 116 TFLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
+K+ +D + + ++ G+ E+ + QLSGG+ QRI IAR L++EP ++
Sbjct: 125 NLVKSKNDPLYKQKILDIMKKCGVK-EELYNRSLAQLSGGERQRIAIARTLIIEPKFIVC 183
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE VS+LD + + +L LL + + N+ +++FITHDL + Y+SD+I IMY G +VE G
Sbjct: 184 DEIVSLLDVTIQKQILELLKQLKKNYELTLLFITHDLGVAKYLSDQIAIMYLGKLVELGP 243
Query: 236 TEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKC 295
TEK+F NP HPYT LL S+P L +++ GI ++ K +E F +DK
Sbjct: 244 TEKIFTNPQHPYTIELLNSIPKL-IEY---GISSKKYIAK-YENSSYDFLYN-KKKEDKD 297
Query: 296 WKIRPEPVEVEKNHWVAC 313
W +V NH++ C
Sbjct: 298 WH------QVSPNHFILC 309
>pir||D72720 probable oligopeptide transport ATP-binding protein oppD APE0301 -
Aeropyrum pernix (strain K1) >gi|5103940|dbj|BAA79256.1|
(AP000059) 282aa long hypothetical oligopeptide
transport ATP-binding protein oppD [Aeropyrum pernix]
Length = 282
Score = 175 bits (439), Expect = 7e-43
Identities = 104/288 (36%), Positives = 158/288 (54%), Gaps = 22/288 (7%)
Query: 41 VGESGSGKTTIGKLILRLIKPTSGKILFKGE-----------DIWSFDKDKLMNYYYKNV 89
+GESG GK+T+ + I R++ S ++ KG D+ +D+L+ K V
Sbjct: 1 MGESGCGKSTLARSIARILP--SNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIV 58
Query: 90 QAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVGLNPREILGKFP 149
+FQDP A+ +P++KV + + V + ++ L + + + P IL K+P
Sbjct: 59 SMIFQDPSAALSPVHKVKKQVTDHVSGEKRRVEKIAQEILKKLMMPA----PHMILEKYP 114
Query: 150 HQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFIT 209
H+LSGG QRI+IA +L+ P ++IADE + LD + + +L +L R+ T++I IT
Sbjct: 115 HELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRLREELETTIILIT 174
Query: 210 HDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEP 269
H+LA+ I+D+I +MY G +VE D +F+ PLHPYTK LL+S+P +V E IEP
Sbjct: 175 HNLAVAAEIADRIAVMYAGHVVEVADVFSLFERPLHPYTKGLLKSIPKPHVDEE---IEP 231
Query: 270 EREE--GKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACHL 315
R E GC+F PRC D C +I+P E VACHL
Sbjct: 232 IRGEPPSLADPPPGCRFHPRCPYVMDVCMRIKPRLEERAPGRLVACHL 279
>gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [Halobacterium sp.
NRC-1]
Length = 363
Score = 175 bits (439), Expect = 7e-43
Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 20/327 (6%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
+L ++NL +F + +RAVD ++ SI GE + +VGESGSGK+ + I+ L+
Sbjct: 18 ILSIRNLQTVFRTD---HEHIRAVDGISLSISPGETLGIVGESGSGKSVTARSIMGLVDA 74
Query: 62 TS-----GKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
I+F G ++ D+ V +FQDP S NP+Y V R
Sbjct: 75 PGEVLPESSIVFDGTELTELSADQYQEVRGSGVGMIFQDPLKSLNPVYTVGNQIREALR- 133
Query: 117 FLKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
+ ++ E ++ LE V + +P L ++P++ SGG QR +IA L +P +LI
Sbjct: 134 INRGITGQEATDVAIDLLEDVAIPDPERRLDEYPNEFSGGMRQRAVIAMMLACDPDVLIC 193
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE + LD + + ++ LL + + +++FITHD+ + ISD++ +MY G VE
Sbjct: 194 DEPTTALDVTIQAQIVELLQDIQAERDLAILFITHDMGVIAEISDRVNVMYAGEFVEKAP 253
Query: 236 TEKVFDNPLHPYTKMLLESVPDLNVKWE----FKGIEPEREEGKVWELKGCKFAPRCSLA 291
E++F NP HPYT+ LL+++P +V E +G P + C+FAPRC A
Sbjct: 254 VEELFANPKHPYTQGLLDAIPGTSVDDERLNTIEGDVPTPNQ----PATDCRFAPRCPKA 309
Query: 292 KDKCWKIRPEPVEVE--KNHWVACHLY 316
+ C ++ P V V +H AC LY
Sbjct: 310 FEDCTEVHPTHVSVSDTHDHSTACLLY 336
>pir||E64557 dipeptide transport ATP-binding protein dppD - Helicobacter pylori
(strain 26695) >gi|2313399|gb|AAD07370.1| (AE000548)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Helicobacter pylori 26695]
Length = 287
Score = 175 bits (438), Expect = 9e-43
Identities = 102/275 (37%), Positives = 162/275 (58%), Gaps = 11/275 (4%)
Query: 1 MLLEVQNL-TKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
M+LEV++L T FT + +AVD V+F +K+ + + +VGESGSGK+ IL LI
Sbjct: 1 MILEVKDLKTYFFTDKGVN----KAVDGVSFGLKKSQTLCIVGESGSGKSITSLSILGLI 56
Query: 60 -KP---TSGKILFKGEDIWSFDKDKLMNYYY-KNVQAVFQDPFASFNPLYKVDRVFDLVF 114
KP G I F G+D+ + ++ K + +FQ+P S NP Y V + V
Sbjct: 57 EKPGQIVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGFQINEVL 116
Query: 115 RTFLKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLL 173
+ N++ E+ E V LE VG+ + + ++P LSGGQ QR++IA A++ EP +L
Sbjct: 117 KIHHPNLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQRQRVMIAMAMVCEPEIL 176
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEW 233
IADE + LD + + +L L+ E + GTS++FITHDL + I+D++++MY+G +VE
Sbjct: 177 IADEPTTALDVTIQAQILELMKELQQKKGTSILFITHDLGVVAQIADEVVVMYKGHVVEQ 236
Query: 234 GDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIE 268
+++F +P HPYTK LL ++P ++ K +E
Sbjct: 237 ASAKELFADPRHPYTKALLSAIPKPGKEYRKKRLE 271
>pir||B72282 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981773|gb|AAD36295.1|AE001778_16 (AE001778)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 174 bits (437), Expect = 1e-42
Identities = 110/323 (34%), Positives = 181/323 (55%), Gaps = 16/323 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++L+V++L +I+ L G V+AVD V+F IK GEI+ + GESG GK+T+G ++ L
Sbjct: 7 VVLDVRDL-RIYYRTLYG--YVKAVDGVSFDIKRGEILGIAGESGCGKSTLGNGLILLKP 63
Query: 61 PTS---GKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
P G+ + G++I + +L Y+ + + Q + NP K+ ++ D +
Sbjct: 64 PMKYMGGEAILDGKNIMALSPKELRKVRYEKISIIPQYAMDAMNPTKKIKQIIDDLLHEH 123
Query: 118 LKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
++ K +++ LE V L +++L +P +LSGG QR+++ + L+ P +LIADE
Sbjct: 124 GESFE--RKKDVIEERLEIVNLG-KKVLNMYPIELSGGMKQRMVMVISTLMNPDVLIADE 180
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGT-SVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
S LD S++ V+ +L E R+ S+ FITHDL++ Y I+DK++++Y G + E
Sbjct: 181 ITSALDVSSQRSVIQMLYEMREKEIMGSLAFITHDLSVLYQIADKVMVLYAGRVAEISPM 240
Query: 237 EKVFDNPLHPYTKMLLESVPDLNVKW---EFKGIEPEREEGKVWELKGCKFAPRCSLAKD 293
E + PLHPYTKMLL S+P + V++ + KGI P + GC+F RC A +
Sbjct: 241 EDIIQEPLHPYTKMLLSSLPKIGVRYSQTKLKGI-PGYPPSLLNIGPGCRFRDRCPYAFE 299
Query: 294 KCWKIRPEPVEVEKNHWVACHLY 316
KC + PV V+C L+
Sbjct: 300 KC--EQDPPVFDVDGRKVSCWLF 320
>pir||E70141 oligopeptide transport ATP-binding protein oppD - Lyme disease
spirochete >gi|2281462|gb|AAC46287.1| (AF000366)
oligopeptide permease homolog D [Borrelia burgdorferi]
>gi|2688243|gb|AAC66722.1| (AE001140) oligopeptide ABC
transporter, ATP-binding protein (oppD) [Borrelia
burgdorferi]
Length = 290
Score = 174 bits (436), Expect = 1e-42
Identities = 101/260 (38%), Positives = 146/260 (55%), Gaps = 10/260 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
+LE++NLT F + + V NV S+K GEI ++VGESGSGK+ IL+L+
Sbjct: 6 ILEIKNLTIEFR---LKHTTIHPVSNVNLSVKRGEIRAIVGESGSGKSVTSMAILKLLPE 62
Query: 62 T-----SGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
SG+ILF+ +D+ + +L+ + +FQDP S NP ++ +
Sbjct: 63 LTTVYKSGEILFENQDLLKLSEKELLKIRGNKISMIFQDPMTSLNPFLRISTQLEETI-I 121
Query: 117 FLKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
+ + E E L++VG+ N E + FPHQ SGG QR++IA AL PSLLIA
Sbjct: 122 LHQGLGKKEAKEKAIEMLKTVGVVNAEERIKHFPHQFSGGMRQRVMIAMALSCHPSLLIA 181
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE + LD + + +L L+ TS IFITHDLA+ I D + +MY+G IVE G
Sbjct: 182 DEPTTALDVTIQEQILLLIKNLSKKFNTSTIFITHDLAVVAEICDTVSVMYQGKIVEEGT 241
Query: 236 TEKVFDNPLHPYTKMLLESV 255
E++F+NP HPYT LL+S+
Sbjct: 242 VEEIFNNPKHPYTIGLLKSI 261
>pir||H71951 dipeptide transport system dipeptide transport system ATP-binding
protein - Helicobacter pylori (strain J99)
>gi|4154800|gb|AAD05856.1| (AE001465) DIPEPTIDE
TRANSPORT SYSTEM DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 287
Score = 173 bits (434), Expect = 3e-42
Identities = 100/275 (36%), Positives = 161/275 (58%), Gaps = 11/275 (4%)
Query: 1 MLLEVQNL-TKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
M+LEV++L T FT + +AVD V+F +K+ + + +VGESGSGK+ IL LI
Sbjct: 1 MILEVKDLKTYFFTDKGVN----KAVDGVSFGLKKSQTLCIVGESGSGKSITSLSILGLI 56
Query: 60 ----KPTSGKILFKGEDIWSFDKDKLMNYYY-KNVQAVFQDPFASFNPLYKVDRVFDLVF 114
K G I F G+D+ + ++ K + +FQ+P S NP Y V + V
Sbjct: 57 EKPGKIVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGFQINEVL 116
Query: 115 RTFLKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLL 173
+ +++ E+ E V LE VG+ + + ++P LSGGQ QR++IA A++ EP +L
Sbjct: 117 KIHHPSLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQRQRVMIAMAMVCEPEIL 176
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEW 233
IADE + LD + + +L L+ E + GTS++FITHDL + I+D++++MY+G +VE
Sbjct: 177 IADEPTTALDVTIQAQILELMKELQQKKGTSILFITHDLGVVAQIADEVVVMYKGHVVEQ 236
Query: 234 GDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIE 268
+++F +P HPYTK LL ++P ++ K +E
Sbjct: 237 ASAKELFADPRHPYTKALLNAIPKPGKEYRKKRLE 271
>pir||H75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459331|gb|AAF11130.1|AE002000_6 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 386
Score = 173 bits (433), Expect = 3e-42
Identities = 110/334 (32%), Positives = 178/334 (52%), Gaps = 26/334 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI- 59
+LL V NL F + V++VD VTF IK+GE +++VGESGSGK+ ++RLI
Sbjct: 32 VLLAVNNLKTYFNTD---DGVVKSVDGVTFHIKKGETLAVVGESGSGKSVTSLTVMRLIP 88
Query: 60 ----KPTSGKILFKGED-----IWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKV-DRV 109
+ G+ILF G+D + + + ++ ++ +FQ+P S NP+Y V D++
Sbjct: 89 MPPGQIAGGEILFTGKDGVQRNLVNVSEAEMRRIRGNDISMIFQEPMTSLNPVYTVGDQI 148
Query: 110 FDLVFRTFLKNVSDVEKDELVRRALESVGLN-PREILGKFPHQLSGGQLQRILIARALLV 168
+ V + + E ++ L VG+ P + + ++PHQ+SGG QR++IA AL
Sbjct: 149 AEAV--VLHQGKTRKEAMDVATDMLRFVGIPAPEKRVNEYPHQMSGGMRQRVMIAMALSC 206
Query: 169 EPSLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRG 228
+P+LLIADE + LD + + +L+L+ + G S++FITH+L + ++D++++MY G
Sbjct: 207 KPALLIADEPTTALDVTIQAQILDLMRNLQREVGMSILFITHNLGVVAEMADRVVVMYGG 266
Query: 229 SIVEWGDTEKVFDNPLHPYTKMLLESV--PDLNVKWEFKGIEPEREEGKVWEL------- 279
+VE GD ++F P HPYT LL S+ P + G +R E +
Sbjct: 267 RVVEEGDVIEIFKAPRHPYTMGLLNSIPRPSEDEHAHVPGQPKKRLEAIPGNVPNPLNLP 326
Query: 280 KGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVAC 313
GC F PRC A +C + P + H C
Sbjct: 327 PGCTFEPRCKFAVPQCSQAVPALEDTGGGHMARC 360
>gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 326
Score = 172 bits (431), Expect = 6e-42
Identities = 105/328 (32%), Positives = 175/328 (53%), Gaps = 16/328 (4%)
Query: 2 LLEVQNLTKIFTSGLIGGYQ-VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
L+E +NL + G + +RAVDNV+ I GEI + GESG GK+T+ K +L ++
Sbjct: 4 LVEGKNLKAYYVLEFWGKKRTIRAVDNVSLKIFSGEIYGIAGESGCGKSTLLKTLLANLE 63
Query: 61 PTSGKILFKGE----------DIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVF 110
P LF GE ++ S +++ ++ + + Q NP+ ++ F
Sbjct: 64 PPLR--LFGGELNYWLDSKPVNVVSLKEEERRRLKWRFISYIPQGSMHVLNPVKRIRDTF 121
Query: 111 DLVFRTFLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEP 170
+ ++ ++ + + + L+++GL P +L FPHQLSGG QR+ IA A L++P
Sbjct: 122 MEILKSHVRRQKETFLEMAIEH-LKALGL-PSRVLDMFPHQLSGGMRQRVTIALATLLKP 179
Query: 171 SLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSI 230
+++ADE + LD + V+ L+ + + +++ +THD+ + ++ ++ IMY G I
Sbjct: 180 RIILADEPTTALDVVAQRAVIQLIKKIQKELKNTIVLVTHDMGIHAQVTTRMAIMYAGKI 239
Query: 231 VEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSL 290
VE G T ++F PLHPYT+ L++S+P + K +GI P V GC+F PRC
Sbjct: 240 VEEGPTLEIFKEPLHPYTRYLIQSLPRVGDKQLREGI-PGSPPSLVSPPSGCRFHPRCPH 298
Query: 291 AKDKCWKIRPEPVEVEKNHWVACHLYGG 318
A +C + P +EV H AC L GG
Sbjct: 299 ATQRCEEEEPVFLEVNPGHRAACFLLGG 326
>pir||G72283 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981745|gb|AAD36269.1|AE001776_5 (AE001776)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 171 bits (430), Expect = 7e-42
Identities = 108/326 (33%), Positives = 173/326 (52%), Gaps = 12/326 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQV-RAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
L+ +NL + L G +V +AVDNV+ I EI + GESG GK+T+ K +L L+
Sbjct: 4 LISGKNLKAYYVLDLWGSKKVVKAVDNVSLDILPNEIYGIAGESGCGKSTLLKALLALLD 63
Query: 61 PT----SGKILFKGE----DIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDL 112
P G++L+ E ++ + + + + + Q NP+ +V F
Sbjct: 64 PPLRLMDGELLYNIEGRPTNVTLLKSETIRKLRWSFISYIPQGSMHVLNPVKRVRDTFIE 123
Query: 113 VFRTFLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSL 172
+ + +K + D V+ L+ +GL P +L FPHQLSGG QR+ IA A +++P +
Sbjct: 124 ILSSHVKKQTKEFLDLAVQH-LKDLGL-PERVLNMFPHQLSGGMRQRVTIALATVLKPRV 181
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
+ ADE + LD + V+ L+ + +++ +V+ +THD+ + I+ ++ IMY G IVE
Sbjct: 182 IFADEPTTALDVVAQRAVMQLIRKIQNDLKNTVVLVTHDMGVHAQITTRMAIMYAGKIVE 241
Query: 233 WGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAK 292
G T ++F NPLHPYT+ L++S+P + K GI P V GC+F PRC A
Sbjct: 242 EGPTLEIFKNPLHPYTRYLIQSLPAIGDKKLRSGI-PGSPPSLVAPPPGCRFHPRCPHAS 300
Query: 293 DKCWKIRPEPVEVEKNHWVACHLYGG 318
+C + P E++ H VAC L G
Sbjct: 301 QRCREEEPLLKEIKPGHKVACFLMEG 326
>sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|1074009|pir||F64188 dipeptide transport ATP-binding
protein dppD - Haemophilus influenzae (strain Rd KW20)
>gi|972897|gb|AAA95974.1| (U17295) DppD [Haemophilus
influenzae] >gi|1574112|gb|AAC22838.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Haemophilus influenzae Rd]
Length = 330
Score = 171 bits (429), Expect = 1e-41
Identities = 102/301 (33%), Positives = 157/301 (51%), Gaps = 15/301 (4%)
Query: 23 RAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI----KPTSGKILFKGEDIWSFDK 78
+AVD +++ + +GE++ +VGESGSGK+ I+ LI + ++ + F+ D+ + +
Sbjct: 21 KAVDRISYQVAQGEVLGIVGESGSGKSVSSLAIMGLIDHPGRVSAESLQFENTDLLTLES 80
Query: 79 DKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVG 138
+V +FQDP S NP Y V +T KD + L+ VG
Sbjct: 81 KAKRQLIGADVAMIFQDPMTSLNPAYTVGFQIMEALKTHEGGTKKARKDRTLE-LLKLVG 139
Query: 139 L-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEF 197
+ +P + +PHQLSGG QR++IA A+ P LLIADE + LD + + ++ LL E
Sbjct: 140 IPDPESRIDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIMELLLEL 199
Query: 198 RDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPD 257
+ S+I ITHDLAL +++II+MY G IVE G + +F P HPYT+ LL S+P+
Sbjct: 200 QKKECMSLILITHDLALVAEAAERIIVMYAGQIVEEGTAKDIFREPKHPYTQALLRSLPE 259
Query: 258 L----NVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVAC 313
+ +G+ P GK GC PRC A + C ++ P+ + V C
Sbjct: 260 FAEGKSRLESLQGVVP----GKYDRPTGCLLNPRCPYATEYCRQVEPQLHHIGSRK-VKC 314
Query: 314 H 314
H
Sbjct: 315 H 315
>gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 331
Score = 171 bits (428), Expect = 1e-41
Identities = 104/319 (32%), Positives = 164/319 (50%), Gaps = 8/319 (2%)
Query: 4 EVQNLTKIFTSGLIGGYQV-RAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPT 62
E+ K G + Y + + + NV+ I E +I+ + GESGSGK+T+ I+ + P
Sbjct: 3 EISISVKNLNVGYLSDYGIIKVLRNVSIDIPESKIIGVAGESGSGKSTLATTIMGFVNPP 62
Query: 63 ----SGKILFKGE-DIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
G I+ + DI S +D+L + V Q S NP+ KV F + +
Sbjct: 63 LYVERGSIIVDSKYDILSMSRDELNKIRGSVISYVPQAAQNSLNPIRKVKETFTDILKA- 121
Query: 118 LKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
K + ++V LE VGL R++L +P QLSGG QR++IA +LL+ P +LI DE
Sbjct: 122 -KGMDYYANIDVVYNTLEEVGLTDRQVLDMYPFQLSGGMKQRVVIAISLLLNPKILIMDE 180
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTE 237
+ LD + ++L LL + + +++ I+HD+A+ + ISD I +MY G IVE+G
Sbjct: 181 PTTGLDVVVQYEILKLLKKIQKEKDLTLVVISHDIAMLFQISDYIAVMYGGQIVEYGKYN 240
Query: 238 KVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWK 297
+ + HPYT +LL SVP + + + P EG + KGC F+ RC C +
Sbjct: 241 TLLEEAYHPYTYLLLSSVPTVRSRGKKLPRIPGDFEGFIRYPKGCVFSSRCPFVTSTCKE 300
Query: 298 IRPEPVEVEKNHWVACHLY 316
+ P+ V +K + C Y
Sbjct: 301 VPPQIVAYDKFGFYKCIRY 319
>emb|CAC05750.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 327
Score = 170 bits (427), Expect = 2e-41
Identities = 108/329 (32%), Positives = 175/329 (52%), Gaps = 21/329 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI- 59
MLLEV++L F + +AV+ V++ + GE ++++GESGSGK+ + I+ ++
Sbjct: 1 MLLEVRDLHVEFHTR---DGVAKAVNGVSYGVDAGETLAVLGESGSGKSVTAQTIMGILD 57
Query: 60 ----KPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFR 115
+ T+G+ILF+G D+ +++ + +FQD +S NP+ V +F
Sbjct: 58 IPPGRVTAGEILFEGRDLLKLKEEERRKVRGAEMAMIFQDALSSLNPVLTVGAQLAEMF- 116
Query: 116 TFLKNVSDVEKDELVRRALESVGLNP-REILGKFPHQLSGGQLQRILIARALLVEPSLLI 174
T + +S + ++ V + +E + ++PHQ SGG QRI+IA A+ +EP L+I
Sbjct: 117 TVHRGMSRKDAHAKAVELMDRVRIPAAKERVRQYPHQFSGGMRQRIMIAMAMALEPKLII 176
Query: 175 ADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWG 234
ADE + LD + + V++LL E + +I ITHDL + ++DKI +MY G IVE
Sbjct: 177 ADEPTTALDVTVQAQVMDLLAELQRELHMGLILITHDLGVVADVADKIAVMYAGRIVETA 236
Query: 235 DTEKVFDNPLHPYTKMLLESVPDLNVK----WEFKGIEPEREEGKVWELKGCKFAPRCSL 290
++ P HPYT+ LLES+P L+ K + KG+ P GC F PRC +
Sbjct: 237 PVHDIYKAPAHPYTRGLLESIPRLDQKGQELYAIKGLPPNLTRIP----PGCAFHPRCPM 292
Query: 291 AKDKCWKIRP---EPVEVEKNHWVACHLY 316
A+D C P + E + ACH +
Sbjct: 293 AQDVCRTDVPPLYDVTESDAERGSACHFW 321
>pir||F72428 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980512|gb|AAD35122.1|AE001690_16 (AE001690)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 330
Score = 170 bits (426), Expect = 2e-41
Identities = 120/330 (36%), Positives = 179/330 (53%), Gaps = 22/330 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLI-LRLI 59
+LL+ +N+ + + V+AVD ++F I E E++ +VGESG GKTT+ +I + ++
Sbjct: 4 ILLKAENVRAYYKLEKVS---VKAVDGLSFEILEDEVIGVVGESGCGKTTLSNVIFMNMV 60
Query: 60 KPTS---GKILFK--GE--DIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDL 112
KP + GKI + GE ++ S +D++ ++ + P A+ N L R+
Sbjct: 61 KPLTLVDGKIFLRVNGEFVELSSMTRDEVKRKFWGKEITII--PQAAMNALMPTIRMEKY 118
Query: 113 VFRTFLKNVSDVEKDELV---RRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVE 169
V L ++++EL+ RR E VGL+P I ++P +LSGG QR +IA A ++
Sbjct: 119 V--RHLAESHGIDEEELLDKARRRFEEVGLDPLWIK-RYPFELSGGMRQRAVIAIATILN 175
Query: 170 PSLLIADEAVSMLDASTRIDVLNLLGEF-RDNHGTSVIFITHDLALGYYISDKIIIMYRG 228
PSLLIADE S LD + +L +L + R S+IFITHD+A I+D++IIMY G
Sbjct: 176 PSLLIADEPTSALDVVNQKVLLKVLMQMKRQGIVKSIIFITHDIATVRQIADRMIIMYAG 235
Query: 229 SIVEWGDTEKVFDNPLHPYTKMLLESV--PDLNVKWEFKGIEPEREEGKVWELKGCKFAP 286
IVE+ E + + PLHPYT+ L SV P+ VK P + GC+F P
Sbjct: 236 KIVEFAPVESLLEKPLHPYTQGLFNSVLTPEPEVKKRGITTIPGAPPNLINPPSGCRFHP 295
Query: 287 RCSLAKDKCWKIRPEPVEVEKNHWVACHLY 316
RC A D C + P E+E VAC LY
Sbjct: 296 RCPHAMDVCKEKEPPLTEIEPGRRVACWLY 325
>sp|P04285|OPPD_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|47805|emb|CAA29042.1| (X05491) Opp D (AA1-335)
[Salmonella typhimurium]
Length = 335
Score = 169 bits (424), Expect = 4e-41
Identities = 105/300 (35%), Positives = 161/300 (53%), Gaps = 10/300 (3%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+LLEV +L F + V AV+++ F+++ GE + +VGESGSGK+ ++ L+
Sbjct: 16 VLLEVNDLRVTFATP---DGDVTAVNDLNFTLRAGETLGIVGESGSGKSQTAFALMGLLA 72
Query: 61 PTSGKI----LFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
T+G+I F G +I + + +L + + +FQDP S NP +V V
Sbjct: 73 -TNGRIGGSATFNGREILNLPERELNTLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML 131
Query: 117 FLKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
K +S E E R L++V + R+ + +PH+ SGG QR++IA ALL P LLIA
Sbjct: 132 H-KGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 190
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE + LD + + ++ LL E + T++I ITHDL + I DK+++MY G +E+G
Sbjct: 191 DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGK 250
Query: 236 TEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKC 295
VF P+HPY+ LL +VP L+ + P + KGC F PRC A + C
Sbjct: 251 ARDVFYQPVHPYSIGLLNAVPRLDSEGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEIC 310
>pir||QREBOT oligopeptide transport protein oppD - Salmonella typhimurium
Length = 335
Score = 168 bits (422), Expect = 6e-41
Identities = 106/300 (35%), Positives = 161/300 (53%), Gaps = 10/300 (3%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+LLEV +L F + V AV+++ F+++ GE + +VGESGSGK+ +L L +
Sbjct: 16 VLLEVNDLRVTFATP---DGDVTAVNDLNFTLRAGETLGIVGESGSGKSQ-SRLRLMGLL 71
Query: 61 PTSGKI----LFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
T+G+I F G +I + + +L + + +FQDP S NP +V V
Sbjct: 72 ATNGRIGGSATFNGREILNLPERELNTRRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML 131
Query: 117 FLKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
K +S E E R L++V + R+ + +PH+ SGG QR++IA ALL P LLIA
Sbjct: 132 H-KGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 190
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE + LD + + ++ LL E + T++I ITHDL + I DK+++MY G +E+G
Sbjct: 191 DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGK 250
Query: 236 TEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKC 295
VF P+HPY+ LL +VP L+ + P + KGC F PRC A + C
Sbjct: 251 ARDVFYQPVHPYSIGLLNAVPRLDSEGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEIC 310
>pir||JC5009 nucleotide-binding protein D - Methanosarcina mazei
>gi|1491738|emb|CAA62801.1| (X91502) ABC transporter
[Methanosarcina mazei]
Length = 317
Score = 166 bits (417), Expect = 2e-40
Identities = 110/321 (34%), Positives = 168/321 (52%), Gaps = 19/321 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LLEV+NL F +G V A+ ++FSI E E ++LVGE+G GK+ I+RL+ P
Sbjct: 9 LLEVKNLQVSF----LGIKTVTALSGISFSIGERETLALVGETGCGKSVAAHAIMRLLPP 64
Query: 62 TSG---KILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFL 118
SG + +G ++ + ++ K + +FQ+P + NP+Y + R
Sbjct: 65 ESGVKGTVELRGRNLLGLSEKEMTEIRGKEIGIIFQNPSLALNPVYSIGHQLAEPLRLHR 124
Query: 119 KNVSDVEKDELVR--RALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
K + +K L R AL+++G N EI+ +P SGG QR LIA + +++P+LLIA
Sbjct: 125 K---EKKKKALSRAAEALKNMGFANTGEIINYYPSWCSGGMNQRFLIAASTILDPALLIA 181
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE LD S ++ L ++ T+++ I+HDL ++D++ +MY G IVE D
Sbjct: 182 DEPGKGLDRSCLSELEAGLKRLKEEKKTALLLISHDLGFVRNLADRVAVMYAGEIVEIAD 241
Query: 236 TEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKC 295
+ +F+ PLHPYTK LL S+P+ G P GC+F PRC L K C
Sbjct: 242 SSGIFEEPLHPYTKGLLNSLPEKGF-IPIPGFSPPLSRLP----SGCRFHPRCPLRKRCC 296
Query: 296 WKIRPEPVEVEKNHWVACHLY 316
+ +PE +E V C LY
Sbjct: 297 IENQPEIIET-NGRAVRCFLY 316
>pir||H72366 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981043|gb|AAD35615.1|AE001728_16 (AE001728)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 389
Score = 166 bits (416), Expect = 3e-40
Identities = 97/249 (38%), Positives = 138/249 (54%), Gaps = 16/249 (6%)
Query: 77 DKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFD--LVFRTFLKNVSDVEKDELVRRAL 134
D D+ + + +Q VFQDP +S NP V + ++F K E ++ + L
Sbjct: 146 DIDEKRMKFRRKIQIVFQDPMSSLNPRMTVGDILTEPILFHGLAKTRE--EAVDMAKDLL 203
Query: 135 ESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLL 194
+SVGL L ++PHQ SGGQ QRI IARA+ + P ++I DE + LD S + V+NL
Sbjct: 204 KSVGLKEYH-LERYPHQFSGGQRQRIAIARAISINPEIVILDEPTASLDVSVQAQVINLF 262
Query: 195 GEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLES 254
+ ++ G + +FI+HDL L +IS ++ IMY G IVE G+T+++FDNPLHPYT+ LL +
Sbjct: 263 LKLQEEKGFTYLFISHDLGLVRFISHEVGIMYLGRIVEMGNTDEIFDNPLHPYTQALLSA 322
Query: 255 VPDLNVKWE-------FKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEK 307
VP + K E +G P + GC F PRC C K P E+
Sbjct: 323 VPVPDPKVERTRKRIILRGGVP----SPINRPTGCFFHPRCPYKMPVCEKEYPVMKEISP 378
Query: 308 NHWVACHLY 316
HWVACHL+
Sbjct: 379 GHWVACHLH 387
>gb|AAK41518.1| Oligo/dipeptide transport, ATP binding protein . amino-end
fragment. (dppF-2) [Sulfolobus solfataricus]
Length = 245
Score = 157 bits (392), Expect = 2e-37
Identities = 93/231 (40%), Positives = 140/231 (60%), Gaps = 10/231 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQ---VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILR 57
++++VQN+ + G +G ++ V AV++V+ IK+GEI L+GESGSGKTT+GK ILR
Sbjct: 6 IIVKVQNVWIKYPMGRVGLFRKLYVHAVNDVSLEIKKGEIFGLIGESGSGKTTLGKGILR 65
Query: 58 LIKPTSGKILFKGE-----DIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDL 112
LI+ SG I +K + DI + D + K+ Q + QDP+ + +P V +
Sbjct: 66 LIETYSGSIYWKVDGGKLVDITKLN-DNTLRRLRKDFQIIQQDPYGALDPRMSVYEILAE 124
Query: 113 VFRTFLKNVSDVEKDELVRRALESVGLNPRE-ILGKFPHQLSGGQLQRILIARALLVEPS 171
R + E+ E + + L V L P E K P +LSGGQ QR+++ARALL+ P
Sbjct: 125 GLRLHKLISNKSEEVEQIYKILSIVKLTPPENFANKKPMELSGGQRQRVVVARALLLRPK 184
Query: 172 LLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKI 222
++ADE +SMLDASTR +L + RD GT+ +FITHD+++ Y+SD+I
Sbjct: 185 FIVADEPISMLDASTRGQILEFILNDRDQRGTAYLFITHDISIASYVSDRI 235
>sp|P45288|SAPD_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|1075118|pir||D64134 peptide transport system
ATP-binding protein HI1641 - Haemophilus influenzae
(strain Rd KW20) >gi|1574489|gb|AAC23288.1| (U32837)
peptide ABC transporter, ATP-binding protein (sapD)
[Haemophilus influenzae Rd]
Length = 349
Score = 153 bits (384), Expect = 2e-36
Identities = 107/331 (32%), Positives = 175/331 (52%), Gaps = 29/331 (8%)
Query: 2 LLEVQNLT-KIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
LL++ NL +I TS +++ VD V S+ EGEI LVGESGSGK+ I K+I IK
Sbjct: 3 LLDICNLNIEIQTSN----GRIKIVDGVNLSLNEGEISGLVGESGSGKSLIAKVICNAIK 58
Query: 61 P----TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDR--VFDLVF 114
T+ + F ++ +K K + +FQ+P + +P K+ + + ++
Sbjct: 59 ENWIITADRFRFHDVELLKLSPNKRRKLVGKEISMIFQNPLSCLDPSRKIGKQLIQNIPN 118
Query: 115 RTFLKNVSDVEKDELVRRALE---SVGLNP-REILGKFPHQLSGGQLQRILIARALLVEP 170
TF KN RRA+E VG+ R+I+ +P++L+ G+ Q+++IA A+ +P
Sbjct: 119 WTF-KNKWWKWFGWKKRRAIELLHRVGIKDHRDIMASYPNELTEGEGQKVMIAMAVANQP 177
Query: 171 SLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSI 230
LLIADE + L+++T + V LL N GT+++ ++D+ D+I ++Y G
Sbjct: 178 RLLIADEPTNALESTTALQVFRLLSSMNQNQGTTILLTSNDIKSISEWCDQISVLYCGQN 237
Query: 231 VEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFK-------GIEPEREEGKVWELKGCK 283
E TE + ++P HPYT+ L+ +VPD FK G P E+ + GC+
Sbjct: 238 TESAPTEILIESPHHPYTQALINAVPDFTQPLGFKTKLGTLEGTAPILEQMPI----GCR 293
Query: 284 FAPRCSLAKDKCWKIRPEPVEVEKNHWVACH 314
PRC A+ KC + +P +++ K H +CH
Sbjct: 294 LGPRCPFAQKKCME-KPRRLKI-KQHEFSCH 322
>dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [Ochrobactrum
anthropi]
Length = 334
Score = 153 bits (383), Expect = 2e-36
Identities = 97/320 (30%), Positives = 164/320 (50%), Gaps = 12/320 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LL V NL F++ V A + V+ I GE + +VGESGSGK+ + + +L L+
Sbjct: 6 LLSVDNLNVTFSTPR---GNVVANNGVSLQIAGGETLGIVGESGSGKSVLCRALLGLLPS 62
Query: 62 T-----SGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRT 116
+ +++F G ++ S ++ + + VFQ+P +S NP++ + R
Sbjct: 63 PPATIRADRLVFAGRNMLSLTAAEMRAVRGQEISMVFQNPMSSLNPVWPIGDQISEGLRV 122
Query: 117 FLKNVSDVEKDELVRRALESVGLNPREI-LGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
+ + + + AL VG+ EI + +PHQ SGG QR +IA A++ EP LL+A
Sbjct: 123 H-RGIGNAQARSAAIAALRRVGIPSPEIRVDDYPHQWSGGMAQRAVIAMAMIGEPKLLLA 181
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE + LD + + +L+LL + + G +++ ++HD+++ D + +MY G +VE G
Sbjct: 182 DEPTTALDVTIQDQILSLLMQLQRETGMAIVLVSHDMSVISETCDNVAVMYAGGVVETGR 241
Query: 236 TEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKC 295
T +F P HPYT LL S+P + + + P + GC F RCS+A +C
Sbjct: 242 TTDIFRTPSHPYTAGLLNSIPPIKGRADKLASIPGQPPDLARLGPGCPFFERCSVASAEC 301
Query: 296 WKIRPEPVE-VEKNHWVACH 314
+ RP ++ + ACH
Sbjct: 302 -QTRPVALKRLASGQQTACH 320
>emb|CAA10912.1| (AJ222649) sapD [Erwinia chrysanthemi]
Length = 330
Score = 152 bits (381), Expect = 4e-36
Identities = 103/329 (31%), Positives = 169/329 (51%), Gaps = 25/329 (7%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LLE++N+T F L V+AVD V+ ++ EGEI LVGESGSGK+ I K I + K
Sbjct: 3 LLEIRNVTIEF---LTPDGPVKAVDRVSINLNEGEIRGLVGESGSGKSLIAKAICGINKE 59
Query: 62 ----TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDR-VFDLVFRT 116
T+ + F D+ + N+ +FQ+P + +P +V R + +
Sbjct: 60 NWRITADRFRFDDVDMLQLTPPQRRKLVRHNMSMIFQEPQSCLDPSARVGRQLIQSIPGW 119
Query: 117 FLKNVSDVEKDELVRRALE---SVGLNP-REILGKFPHQLSGGQLQRILIARALLVEPSL 172
K + RRA+E VG+ ++++ FP++L+ G+ Q+++IA AL +P L
Sbjct: 120 TYKGRWWQRFNWRKRRAIELLHRVGIKDHKDVMRSFPYELTEGECQKVMIAIALANQPRL 179
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
LIADE + ++A+T+ + LL N+ T+++ I+HDL +D+I ++Y G VE
Sbjct: 180 LIADEPNNAMEATTQAQIFRLLSRLNQNNNTTILLISHDLQTMSKWADRINVLYCGQTVE 239
Query: 233 WGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFK-------GIEPEREEGKVWELKGCKFA 285
++++ P HPYT+ L+ ++PD K G P V GC+
Sbjct: 240 SAVSDELISAPHHPYTQALIRAMPDFGCSLPHKSRLNTLPGAIPSLAHLPV----GCRLG 295
Query: 286 PRCSLAKDKCWKIRPEPVEVEKNHWVACH 314
PRC ++ +C + P+ +NHW ACH
Sbjct: 296 PRCPYSQKQC--MTAPPLIPVRNHWYACH 322
>dbj|BAB05518.1| (AP001513) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 266
Score = 152 bits (381), Expect = 4e-36
Identities = 97/262 (37%), Positives = 147/262 (56%), Gaps = 14/262 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M+L V+ +T +I VD V+ I+ G+ +LVG+SGSGK+ + + I +++
Sbjct: 1 MILSVEQVTIRSRENII-------VDQVSLQIRAGQWFALVGQSGSGKSLLSQAIGQMLA 53
Query: 61 PT---SGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
P GKI FKG D+++ + ++ + +FQD SF P + + F+ +
Sbjct: 54 PNLQVEGKISFKGRDLFTLSRKEMRTLRGSKISYIFQDYQGSFTPFRTIAQHFEEYQKNH 113
Query: 118 LKNVSDVEKDELVRRALESVGLNPREIL-GKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
+ KDE +R AL+SVGL EIL ++P QLSGGQLQR+ IA ALL+ P LLIAD
Sbjct: 114 TTRSAKERKDEAMR-ALQSVGLE--EILYHRYPFQLSGGQLQRVSIALALLLSPDLLIAD 170
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
EA + LD+ + +L LL + G +++FITHD +D I +M G+IVE G
Sbjct: 171 EATTALDSVSGHRILELLARRQRETGCAILFITHDWRHVRRYADHIAVMKEGTIVESGGK 230
Query: 237 EKVFDNPLHPYTKMLLESVPDL 258
+V D+ YTK L+++ P L
Sbjct: 231 HRVLDHRRDDYTKQLIQAAPTL 252
>pir||T45280 probable ABC transporter intracellular ATPase chain bldkD
[imported] - Streptomyces coelicolor
>gi|1532204|gb|AAB09557.1| (U68036) putative ABC
transporter intracellular ATPase subunit BldkD
[Streptomyces coelicolor A3(2)]
Length = 353
Score = 152 bits (380), Expect = 5e-36
Identities = 103/312 (33%), Positives = 160/312 (51%), Gaps = 20/312 (6%)
Query: 19 GYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLIL----RLIKPTSGKILFKGEDIW 74
G V+AVD ++F ++ G+ + +VGESGSGK+ +L R G I G+++
Sbjct: 33 GGVVKAVDGLSFDLERGKTLGIVGESGSGKSVTNLAVLGLHDRRRTAIDGSITLDGQELT 92
Query: 75 SFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRA- 133
+ +L K + +FQD + +P Y V R + F+K+ +KD
Sbjct: 93 DASEKQLEKLRGKKMAMIFQDALTALSPYYTVGRQ---IAEPFMKHNGASKKDARCGAID 149
Query: 134 -LESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVL 191
L+ VG+ +P++ + +PHQ SGG QR +IA AL P LLIADE + LD + + +L
Sbjct: 150 LLQKVGIPHPQKRVDDYPHQFSGGIGQRAMIAMALSCNPDLLIADEPTTALDVTVQAQIL 209
Query: 192 NLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKML 251
+LL + + +++I ITHDL + ++D I++MY G VE G +V +P HPYT L
Sbjct: 210 DLLKDLQQEFASAIIMITHDLGVVGNMADDIMVMYAGRAVERGTVREVLKSPQHPYTWGL 269
Query: 252 LESVPDL--NVKWEFKGIEPEREEGKVWELKGCKFAPRCS----LAKDKCWKIRPEPVEV 305
L S+P+L +V I P + GC F PRC ++ ++C RP +
Sbjct: 270 LSSMPNLTSDVDEPLMPI-PGSPPSLMNPPSGCAFHPRCGFTDLVSGERCSGERP---TL 325
Query: 306 EKNHWVACHLYG 317
ACHL G
Sbjct: 326 PHGRAAACHLTG 337
>pir||E82170 peptide ABC transporter, ATP-binding protein VC1683 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656199|gb|AAF94833.1| (AE004246) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 331
Score = 150 bits (375), Expect = 2e-35
Identities = 105/328 (32%), Positives = 175/328 (53%), Gaps = 23/328 (7%)
Query: 2 LLEVQNLT-KIFT-SGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
LL++++LT +I T GL V+AVD ++ ++ EGEI LVGESGSGK+ + K I+ +
Sbjct: 3 LLDIRHLTIEIDTPQGL-----VKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGIC 57
Query: 60 KP----TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDR--VFDLV 113
K T+ ++ D+ + ++V +FQ+P +P +V R + +
Sbjct: 58 KENWRVTADRMRLGNIDLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESIP 117
Query: 114 FRTFLKNVSD--VEKDELVRRALESVGLNP-REILGKFPHQLSGGQLQRILIARALLVEP 170
FRTF + + + L VG+ ++I+ +P++L+ G+ Q+++IA A+ +P
Sbjct: 118 FRTFEGRWWERFTWRKKQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAKP 177
Query: 171 SLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSI 230
LLIADE + +D T+ +L LL + TS++ I HDL +D+I +MY G
Sbjct: 178 KLLIADEPTNDVDPITQSQILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQS 237
Query: 231 VEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELK----GCKFAP 286
VE +T K+ P HPYT LL+++PD + W + + G + L+ GC+ P
Sbjct: 238 VESAETAKIVAEPKHPYTAALLKAMPDFS-DWIPHKQKLQSLPGSIPPLQHLPIGCRLGP 296
Query: 287 RCSLAKDKCWKIRPEPVEVEKNHWVACH 314
RC A+ +C ++ P V KNH +CH
Sbjct: 297 RCPYAQRQCVEV-PHSRWV-KNHKFSCH 322
>emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport system, ATP-binding
protein appD [Thermoplasma acidophilum]
Length = 298
Score = 149 bits (373), Expect = 4e-35
Identities = 95/291 (32%), Positives = 154/291 (52%), Gaps = 11/291 (3%)
Query: 32 IKEGEIVSLVGESGSGKTTIGKLILRLIKP----TSGKILFKGEDIWSFDKDKLMNYYYK 87
+++G I+ + GESGSGK+T+ + I R +K TSG++ +DI + + L
Sbjct: 5 VRKGIILGIAGESGSGKSTLAQAIYRSLKYPGEITSGQVYLDDQDILRINGEDLRRIRAT 64
Query: 88 NVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDE-LVRRALESVGLNPREILG 146
+ P A+ N L V R+ + + + EK+E ++ A++ V L +L
Sbjct: 65 RFSFI---PQAAMNALNPVKRIRYQFYDLLIAHGLQPEKNEDRIQAAIKMVRLR-ENVLE 120
Query: 147 KFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVI 206
FPH+LSGG QR++IA +LL+ P L+I DE + LD + ++L L + G ++I
Sbjct: 121 SFPHELSGGMRQRVVIAMSLLLRPDLVILDEPTTGLDVLVQHEILKDLKAIQRQSGLTMI 180
Query: 207 FITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKG 266
FITHDL++ Y I+D+I ++Y G IVE+G +++ ++P HPY +LL S+P + K G
Sbjct: 181 FITHDLSILYEIADEIAMIYAGEIVEFGPRDEMLNDPQHPYNFLLLRSMPRIGAK-RGTG 239
Query: 267 IEPEREEGKVWE-LKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACHLY 316
G E GC+F RC + +C PE + H+ C Y
Sbjct: 240 YRLIGNPGNFREDFNGCQFYTRCPFSVPQCVSKHPELTSDDGRHFRRCLRY 290
>gb|AAF28110.1|AF153317_2 (AF153317) SapD [Shigella dysenteriae]
Length = 330
Score = 149 bits (372), Expect = 5e-35
Identities = 103/336 (30%), Positives = 167/336 (49%), Gaps = 39/336 (11%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LL+++NLT F +G V+AVD V+ ++ EGEI LVGESGSGK+ I K I + K
Sbjct: 3 LLDIRNLTIEFKTG---DEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKD 59
Query: 62 ----TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
T+ ++ F D+ + NV +FQ+P + +P +V R
Sbjct: 60 NWRVTADRMRFDDIDLLGLSARERRKLVGHNVSMIFQEPQSCLDPSERVGR-------QL 112
Query: 118 LKNVSD-----------VEKDELVRRALESVGLNP-REILGKFPHQLSGGQLQRILIARA 165
++N+ V + L VG+ ++ + FP++L+ G+ Q+++IA A
Sbjct: 113 MQNIPAWTYKGRWWQRFVWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIA 172
Query: 166 LLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIM 225
L +P LLIADE + ++ +T+ + LL N T+++ I+HDL + +DKI ++
Sbjct: 173 LANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVL 232
Query: 226 YRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFK-------GIEPEREEGKVWE 278
Y G VE ++++ P HPYT+ L+ ++PD K G P E+ +
Sbjct: 233 YCGQTVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPI-- 290
Query: 279 LKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACH 314
GC+ PRC A+ +C I + KNH ACH
Sbjct: 291 --GCRLGPRCPYAQREC--IVTPRLTGAKNHLYACH 322
>sp|P36635|SAPD_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|7445933|pir||F64877 peptide transport system
ATP-binding protein sapD - Escherichia coli
>gi|1279403|emb|CAA65940.1| (X97282) SapD protein
[Escherichia coli] >gi|1742104|dbj|BAA14844.1| (D90766)
Peptide transport system ATP-binding protein SapD
(fragment). [Escherichia coli]
>gi|1742113|dbj|BAA14852.1| (D90767) Peptide transport
system ATP-binding protein SapD (fragment). [Escherichia
coli] >gi|1742122|dbj|BAA14861.1| (D90768) Peptide
transport system ATP-binding protein SapD (fragment).
[Escherichia coli] >gi|1787548|gb|AAC74373.1| (AE000227)
putative ATP-binding protein of peptide transport system
[Escherichia coli K12]
Length = 330
Score = 148 bits (371), Expect = 6e-35
Identities = 105/329 (31%), Positives = 168/329 (50%), Gaps = 25/329 (7%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LL+++NLT F +G V+AVD V+ ++ EGEI LVGESGSGK+ I K I + K
Sbjct: 3 LLDIRNLTIEFKTG---DEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKD 59
Query: 62 ----TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDR-VFDLVFRT 116
T+ ++ F D+ + NV +FQ+P + +P +V R + +
Sbjct: 60 NWRVTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAW 119
Query: 117 FLKNVSDVEKDELVRRALE---SVGLNP-REILGKFPHQLSGGQLQRILIARALLVEPSL 172
K RRA+E VG+ ++ + FP++L+ G+ Q+++IA AL +P L
Sbjct: 120 TYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRL 179
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
LIADE + ++ +T+ + LL N T+++ I+HDL + +DKI ++Y G VE
Sbjct: 180 LIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVE 239
Query: 233 WGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFK-------GIEPEREEGKVWELKGCKFA 285
++++ P HPYT+ L+ ++PD K G P E+ + GC+
Sbjct: 240 TAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPI----GCRLG 295
Query: 286 PRCSLAKDKCWKIRPEPVEVEKNHWVACH 314
PRC A+ +C I + KNH ACH
Sbjct: 296 PRCPYAQREC--IVTPRLTGAKNHLYACH 322
>dbj|BAA97046.1| (AB015765) TrkE [Vibrio alginolyticus]
Length = 331
Score = 148 bits (371), Expect = 6e-35
Identities = 105/328 (32%), Positives = 172/328 (52%), Gaps = 23/328 (7%)
Query: 2 LLEVQNLT-KIFT-SGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
LL++++LT +I T GL V+AVD ++ ++ EGEI LVGESGSGK+ + K I+ +
Sbjct: 3 LLDIRHLTIEIETPQGL-----VKAVDRMSLTLNEGEIRGLVGESGSGKSLVAKAIVGVS 57
Query: 60 KP----TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDR--VFDLV 113
K T+ ++ D+ + +++ +FQ+P +P +V R + +
Sbjct: 58 KDNWRITADRMRLGNIDLLQLTPKERRRVIARDIAMIFQEPSTCLDPSEEVGRQLIESIP 117
Query: 114 FRTFLKNVSDVEK--DELVRRALESVGLNP-REILGKFPHQLSGGQLQRILIARALLVEP 170
R F + K + L VG+ + ++G +P++L+ G+ Q+++IA A+ +P
Sbjct: 118 SRAFEGKWWERFKWRKKQAIALLHKVGIKDHKRLMGSYPYELTDGECQKVMIAMAIATKP 177
Query: 171 SLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSI 230
LLIADE + LD T+ +L LL + T+++ I HDLA + +I +MY G
Sbjct: 178 KLLIADEPTNDLDPITQSQILRLLSRMNQLNNTTILLIGHDLATITQWAGRITVMYCGQS 237
Query: 231 VEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELK----GCKFAP 286
VE DT K+ P HPYT LL+++PD N W + + G + L+ GC+ P
Sbjct: 238 VESADTSKIIAAPKHPYTDALLKAMPDFN-DWVPHKQKLQSLPGSIPPLQHLPIGCRLGP 296
Query: 287 RCSLAKDKCWKIRPEPVEVEKNHWVACH 314
RC A+ +C +I P + KNH CH
Sbjct: 297 RCPYAQKQCVEI-PHTRRI-KNHKFNCH 322
>sp|P36636|SAPD_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|628820|pir||S39588 peptide transport system
ATP-binding protein sapD - Salmonella typhimurium
>gi|414211|emb|CAA52287.1| (X74212) sapD [Salmonella
typhimurium]
Length = 330
Score = 148 bits (370), Expect = 8e-35
Identities = 106/329 (32%), Positives = 168/329 (50%), Gaps = 25/329 (7%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
LL+++NLT F + G+ V+AVD V+ ++ EGEI LVGESGSGK+ I K I + K
Sbjct: 3 LLDIRNLTIEFKTS--EGW-VKAVDRVSMTLSEGEIRGLVGESGSGKSLIAKAICGVAKD 59
Query: 62 ----TSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDR-VFDLVFRT 116
T+ ++ F D+ + NV +FQ+P + +P +V R + +
Sbjct: 60 NWRVTADRMRFDDIDLLRLSSRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAW 119
Query: 117 FLKNVSDVEKDELVRRALE---SVGLNP-REILGKFPHQLSGGQLQRILIARALLVEPSL 172
K RRA+E VG+ +E + FP++L+ G+ Q+++IA AL +P L
Sbjct: 120 TYKGRWWQRLGWRKRRAIELLHRVGIKDHKEPMRSFPYELTDGECQKVMIAIALANQPRL 179
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
LIADE + ++ +T+ + LL N T+++ I+HDL + +DKI ++Y G VE
Sbjct: 180 LIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVE 239
Query: 233 WGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFK-------GIEPEREEGKVWELKGCKFA 285
++ + P HPYT+ L+ ++PD K G P E+ + GC+
Sbjct: 240 TAPSKDLVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPI----GCRLG 295
Query: 286 PRCSLAKDKCWKIRPEPVEVEKNHWVACH 314
PRC A+ +C I + KNH ACH
Sbjct: 296 PRCPYAQREC--IITPRLTGAKNHLYACH 322
>pir||T03431 probable transport protein accB - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153178|gb|AAC17198.1| (AF010180) AccB
[Agrobacterium tumefaciens]
Length = 321
Score = 139 bits (346), Expect = 5e-32
Identities = 94/304 (30%), Positives = 154/304 (49%), Gaps = 26/304 (8%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKT----TIGKLILRLIKPTSGKILFKGEDIWSFD 77
+ ++ V+FS+ G+ + LVGESG GK+ I K + R I T G I D
Sbjct: 28 ITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGISQTGGTI--------ELD 79
Query: 78 KDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDL-VFRTFLKNVSDVEKDELVRRALES 136
+ + ++QDP +S NP++ + + ++R +D + + R LE
Sbjct: 80 SGPKADGK-PAIAMIYQDPTSSLNPVHSIGYYLESSLYRHQGLEGNDARLEAM--RLLER 136
Query: 137 VGLN-PREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLG 195
VG++ + L +PH+ SGG QR++IA AL +P L+IADE + LD +T+ +L+LL
Sbjct: 137 VGIDRAKSRLRSYPHEYSGGMNQRVMIAHALAAKPKLMIADEPTTALDVTTQAQILHLLE 196
Query: 196 EFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESV 255
E R G +++ ++HDL + ++D+ +MY G IVE ++ + HPY + L+ +
Sbjct: 197 ELRSETGMALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAELLERAAHPYARALIGCM 256
Query: 256 PDLNVKWEFKGIEPERE-EGKVWEL----KGCKFAPRCSLAKDKCWKIRPEPVEVEKNHW 310
P ++ +EP G V L GC + PRC A ++C P PV V H
Sbjct: 257 PTIDA----DDLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCSVSFPGPVNVGAFHD 312
Query: 311 VACH 314
AC+
Sbjct: 313 AACY 316
>sp|P47325|OPPD_MYCGE OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1361734|pir||G64208 oligopeptide transport
ATP-binding protein amiE - Mycoplasma genitalium
>gi|1045756|gb|AAC71297.1| (U39688) oligopeptide ABC
transporter, ATP-binding protein (oppD) [Mycoplasma
genitalium]
Length = 402
Score = 138 bits (345), Expect = 7e-32
Identities = 103/335 (30%), Positives = 154/335 (45%), Gaps = 41/335 (12%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK--PTSGKIL-FKGEDIWSFDK 78
+ AV + ++ G IV +VGESGSGK+ K I+ T K++ FK DI K
Sbjct: 38 LHAVRGIDLKVERGSIVGIVGESGSGKSVSVKSIIGFNDNAQTKAKLMNFKNVDITKLKK 97
Query: 79 DKLMNYYYKNVQAVFQDPFASFNPLYKVDRVF-----------------DLVF------- 114
+ Y V + QDP S NP + + DL F
Sbjct: 98 HQWKYYRGTYVSYISQDPLFSLNPTMTIGKQVKEAIYVASKRRYFQAKSDLKFALSNKEI 157
Query: 115 -------------RTFLKNVSDVEKDELVRRALESVGLNP-REILGKFPHQLSGGQLQRI 160
+T+ + + + ++ L+ +G+N ++ L FP + SGG QRI
Sbjct: 158 DKKTYKSKLKEIKQTYQQKIKPINVEKKTLEILQFIGINDAKKRLKAFPSEFSGGMRQRI 217
Query: 161 LIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISD 220
+IA A+ EP L+IADE + LD + + VL L+ + RD ++IFI+H+++L D
Sbjct: 218 VIAIAVATEPDLIIADEPTTALDVTIQAKVLTLIKQLRDLLNITIIFISHNISLIANFCD 277
Query: 221 KIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELK 280
+ +MY G IVE G E++F NPLHPYT L+ S+P+ K + P + K
Sbjct: 278 FVYVMYAGKIVEQGLVEEIFTNPLHPYTWALISSIPEQKDKNKPLTSIPGVIPNMLTPPK 337
Query: 281 GCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACHL 315
G FA R A ++ P EV K H A L
Sbjct: 338 GDAFASRNQYALAIDFEYHPPFFEVTKTHKAATWL 372
>gi|10954941 Probable accB [Agrobacterium tumefaciens]
>gi|6498294|dbj|BAA87746.1| (AB016260) Probable accB
[Agrobacterium tumefaciens]
Length = 321
Score = 137 bits (341), Expect = 2e-31
Identities = 94/304 (30%), Positives = 156/304 (50%), Gaps = 26/304 (8%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKT----TIGKLILRLIKPTSGKILFKGEDIWSFD 77
+ ++ V+FS+ G+ + LVGESG GK+ I K + R I T G I ++ S
Sbjct: 28 ITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGISQTGGTI-----ELNSGP 82
Query: 78 KDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDL-VFRTFLKNVSDVEKDELVRRALES 136
K + ++QDP +S NP++ + + ++R +D + + R LE
Sbjct: 83 KADGK----PAIAMIYQDPTSSLNPVHSIGYYLESSLYRHQGLEGNDARLEAM--RLLER 136
Query: 137 VGLN-PREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLG 195
VG++ + L +PH+ SGG QR++IA L +P L+IADE + LD +T+ +L+LL
Sbjct: 137 VGIDRAKSRLRSYPHEFSGGMNQRVMIATRSLAKPKLMIADEPTTALDVTTQAQILHLLE 196
Query: 196 EFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESV 255
E R G +++ ++HDL + ++D+ +MY G IVE ++ ++ HPY + L+ +
Sbjct: 197 ELRSETGMALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAELLEHAAHPYARALIGCM 256
Query: 256 PDLNVKWEFKGIEPERE-EGKVWEL----KGCKFAPRCSLAKDKCWKIRPEPVEVEKNHW 310
P ++ +EP G V L GC + PRC A ++C P PV V H
Sbjct: 257 PTIDA----DDLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCSVSFPGPVNVGAFHD 312
Query: 311 VACH 314
AC+
Sbjct: 313 AACY 316
>pir||H64716 ABC transporter, ATP-binding protein - Helicobacter pylori (strain
26695) >gi|2314761|gb|AAD08616.1| (AE000655) ABC
transporter, ATP-binding protein (abc) [Helicobacter
pylori 26695]
Length = 327
Score = 136 bits (340), Expect = 3e-31
Identities = 89/255 (34%), Positives = 145/255 (55%), Gaps = 19/255 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M++E++N+ KI+ +G A+ V +K+G+I+ ++G SG+GK+T+ +LI L +
Sbjct: 1 MVVELKNIEKIYENGF------HALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLER 54
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P+SG++L G ++ K K + + + +FQ FN L VF+ V F
Sbjct: 55 PSSGEVLVNGVNLLKL-KPKELQKARQKIGMIFQH----FN-LLSAKNVFENV--AFALE 106
Query: 121 VSDVEKDEL---VRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
++ EK+++ V LE VGL + + +P QLSGGQ QR+ IAR+L P LL+ DE
Sbjct: 107 IARWEKNKIKSRVHELLELVGLEDK--MHFYPKQLSGGQKQRVAIARSLANCPDLLLCDE 164
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTE 237
A S LD+ T +L LL + S++FITH++ + + +++ ++ G IVE G E
Sbjct: 165 ATSALDSKTTHSILTLLSGIQKKLDLSIVFITHEIEVVKELCNQMCVISSGEIVERGSVE 224
Query: 238 KVFDNPLHPYTKMLL 252
++F NP H TK LL
Sbjct: 225 EIFANPKHAVTKELL 239
>pir||F71800 ABC transporter, ATP-binding protein - Helicobacter pylori (strain
J99) >gi|4156118|gb|AAD07069.1| (AE001570) abc
transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 327
Score = 136 bits (339), Expect = 3e-31
Identities = 89/255 (34%), Positives = 145/255 (55%), Gaps = 19/255 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M++E++N+ KI+ +G A+ V +K+G+I+ ++G SG+GK+T+ +LI L +
Sbjct: 1 MVVELKNIEKIYENGF------HALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLER 54
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P+SG++L G ++ + K K + + + +FQ FN L VF+ V F
Sbjct: 55 PSSGEVLVNGVNLLNL-KPKELQKARQKIGMIFQH----FN-LLSAKNVFENV--AFALE 106
Query: 121 VSDVEKDEL---VRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
++ EK ++ V LE VGL + + +P QLSGGQ QR+ IAR+L P+LL+ DE
Sbjct: 107 IARWEKTKIKSRVHELLELVGLEDK--VHFYPKQLSGGQKQRVAIARSLANCPNLLLCDE 164
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTE 237
A S LD+ T +L LL + S++FITH + + + +++ ++ G IVE G E
Sbjct: 165 ATSALDSKTTHSILTLLSGIQKKFDLSIVFITHQIEVVKELCNQMCVISSGEIVERGSVE 224
Query: 238 KVFDNPLHPYTKMLL 252
++F NP H TK LL
Sbjct: 225 EIFANPKHAVTKELL 239
>emb|CAB65650.1| (AJ252160) putative ABC-transporter ATP-binding protein
[Alicyclobacillus acidocaldarius]
Length = 393
Score = 134 bits (335), Expect = 1e-30
Identities = 82/243 (33%), Positives = 130/243 (52%), Gaps = 18/243 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M +E + KI+ G R+V V+F I+EGE+V L+G SGSGKTTI +LI L +
Sbjct: 1 MTIEFVGVEKIYPGG------ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER 54
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PT G + G+ + K +NV VFQ+ +A F + D V F K
Sbjct: 55 PTKGDVWIGGKRVTDLPPQK------RNVGLVFQN-YALFQHMTVYDNVS---FGLREKR 104
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
V E D VR L + L +FPH+LSGGQ QR+ +ARAL P +L+ DE +
Sbjct: 105 VPKDEMDARVRELLRFMRLE--SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 162
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
+D R ++ + + D G + +F+THD ++D++++++ G++ ++G E+V+
Sbjct: 163 AIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVY 222
Query: 241 DNP 243
+ P
Sbjct: 223 EKP 225
>sp|P75552|OPPD_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|2146480|pir||S73940 oligopeptide transport
ATP-binding protein oppD - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674316|gb|AAB96262.1| (AE000058)
oligopeptide transport ATP-binding protein OppD
[Mycoplasma pneumoniae]
Length = 423
Score = 134 bits (334), Expect = 1e-30
Identities = 103/335 (30%), Positives = 154/335 (45%), Gaps = 41/335 (12%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRL---IKPTSGKILFKGEDIWSFDK 78
++AV V +K+G IV +VGESGSGK+ K I+ K T+ + FK DI K
Sbjct: 38 MQAVRGVDLKVKKGSIVGIVGESGSGKSVCVKSIIGFNDGAKTTAKLMNFKNIDISKMKK 97
Query: 79 DKLMNYYYKNVQAVFQDPFASFNPLYKVDR-----VFDLVFRTFLKNVSDVEKDELVRRA 133
+ Y V + QDP S NP + R ++ R + + SD++ D R
Sbjct: 98 HQWQYYRGTYVSYISQDPLFSLNPTMTIGRQVKEAIYVSCKRRYYQTKSDLKYDLQTERI 157
Query: 134 --------------------------------LESVGLNPREI-LGKFPHQLSGGQLQRI 160
L +G++ E L FP + SGG QRI
Sbjct: 158 DLDTYKEKLAQAKETYKAKTTKAAVHAKTLEILNFIGIDQAEKRLKAFPSEFSGGMRQRI 217
Query: 161 LIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISD 220
+IA A+ EP L+IADE + LD + + LNL+ + RD ++IFI+H+++L D
Sbjct: 218 VIAIAVATEPDLIIADEPTTALDVTIQAKALNLIKQLRDLLNITIIFISHNISLIANFCD 277
Query: 221 KIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELK 280
+ +MY G +VE G E++F NP+HPYT L+ S+P+ K P + K
Sbjct: 278 FVYVMYAGRLVEKGLVEEIFTNPVHPYTWALMASIPEGTDKNAPLTSIPGYIPNMLSPPK 337
Query: 281 GCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACHL 315
G FA R A ++ +P +V + H A L
Sbjct: 338 GDAFAARNQFALAIDFEHQPPFFDVTETHKAATWL 372
>gb|AAC45666.1| (AF010307) AbcC [Helicobacter pylori]
Length = 327
Score = 134 bits (333), Expect = 2e-30
Identities = 85/252 (33%), Positives = 138/252 (54%), Gaps = 13/252 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M++E++N+ KI+ +G A+ V +K+G+I+ ++G SG+GK+T+ +LI L +
Sbjct: 1 MVVELKNIEKIYENGF------HALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLER 54
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P+SG++L G ++ K K + + + +FQ FN L D ++ F +
Sbjct: 55 PSSGEVLVNGVNLLKL-KPKELQKARQKIGMIFQH----FNLLSAKDVFENVAFALEIAR 109
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
+ V LE VGL + + +P QLSGGQ +R+ IAR+L P LL+ DEA S
Sbjct: 110 WEKTKIKSRVHELLELVGLEDK--VHFYPKQLSGGQKERVAIARSLANCPDLLLCDEATS 167
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
LD+ T +L LL + SV+FITH + + + +++ ++ G IVE G E++F
Sbjct: 168 ALDSKTTHSILTLLSGIQKKLDLSVVFITHQIEVVKELCNQMCVISSGEIVERGSVEEIF 227
Query: 241 DNPLHPYTKMLL 252
NP H TK LL
Sbjct: 228 ANPKHAVTKELL 239
>pir||H83609 sulfate transport protein CysA PA0280 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946123|gb|AAG03669.1|AE004466_3 (AE004466) sulfate
transport protein CysA [Pseudomonas aeruginosa]
Length = 329
Score = 128 bits (318), Expect = 1e-28
Identities = 82/244 (33%), Positives = 131/244 (53%), Gaps = 17/244 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M +E++N++K F + +A+D++ I+ GE+V+L+G SG GKTT+ ++I L
Sbjct: 1 MSIEIRNVSKNFNA-------FKALDDINLDIQSGELVALLGPSGCGKTTLLRIIAGLET 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRV-FDLVFRTFLK 119
P +G I+F GED+ D +NV VFQ +A F + D V F L + +
Sbjct: 54 PDAGNIVFHGEDVSQHDVRD------RNVGFVFQH-YALFRHMTVFDNVAFGLRMKPKGE 106
Query: 120 NVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
+ V L V L+ + ++P QLSGGQ QRI +ARAL VEP +L+ DE
Sbjct: 107 RPGESAIKAKVHELLNMVQLD--WLADRYPEQLSGGQRQRIALARALAVEPKILLLDEPF 164
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
LDA R ++ L + + +F+THD ++D+I++M +G I + G +V
Sbjct: 165 GALDAKVRKELRRWLARLHEEINLTSVFVTHDQEEAMEVADRIVVMNKGVIEQIGSPGEV 224
Query: 240 FDNP 243
++NP
Sbjct: 225 YENP 228
>emb|CAA68077.1| (X99740) oligopeptide transport ATP-binding protein homolog
[Mycoplasma hominis]
Length = 842
Score = 127 bits (317), Expect = 1e-28
Identities = 63/148 (42%), Positives = 100/148 (67%), Gaps = 2/148 (1%)
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
+S + ++ +ALE VGL ++ ++PH+ SGGQLQRI+IARAL+VEP +++ADE ++
Sbjct: 646 ISSILYKTIIYKALEDVGLL-KQFAYRYPHEFSGGQLQRIVIARALIVEPQVIVADEPIA 704
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
LD S + V+NLL E +IFI HDL++ Y++D++ IM+ G IVE G TE ++
Sbjct: 705 SLDISIQAQVVNLLKELCIKKNIGLIFIAHDLSMIEYVADEVQIMHLGKIVESGKTEAIY 764
Query: 241 DNPLHPYTKMLLESVPDL-NVKWEFKGI 267
NP+HPYT L +++P + N +F+ +
Sbjct: 765 ANPIHPYTINLFKAIPKISNANEKFQNV 792
Score = 81.1 bits (197), Expect = 2e-14
Identities = 53/134 (39%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 1 MLLEVQNLTKIFTS-GLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
++L + NL K F + G+I +AVD V+F + EGEIV L+GESGSGKTT+G ILRL
Sbjct: 11 VILSIDNLKKYFVNQGMIN----KAVDGVSFDVHEGEIVGLIGESGSGKTTVGSTILRLY 66
Query: 60 KPTSGKILFKGEDI-WSFDKDKLMNYYYKNVQAVFQDPFASFNP---LYKVDRVFDLVFR 115
+G + + + I + L + KNVQ +FQDP AS N +Y + + LV
Sbjct: 67 DDYNGFVRLEDKIISGKRISESLNRFLRKNVQMIFQDPHASLNSQQNIYSILKEPLLVNG 126
Query: 116 TFLKNVSDVEKDEL 129
+ D+ KD L
Sbjct: 127 VMKDKIKDIFKDWL 140
>pir||F81875 sulfate ABC transporter, ATP-binding protein NMA1097 [similarity] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379792|emb|CAB84360.1| (AL162755) putative sulphate
permease ATP-binding protein [Neisseria meningitidis
Z2491]
Length = 357
Score = 126 bits (313), Expect = 4e-28
Identities = 88/254 (34%), Positives = 129/254 (50%), Gaps = 19/254 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M + +QNL K F + A+ N+ ++ G++VSL+G SG GKTT+ ++I L
Sbjct: 1 MSITIQNLNKHFGN-------FHALKNINLNVPTGKLVSLLGPSGCGKTTLLRIIAGLEN 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRV-FDLVFRTFLK 119
GKILF G+D+ + + + V VFQ +A F + D V F L T L
Sbjct: 54 ADGGKILFDGQDVTA------KHVRERKVGFVFQH-YALFRHMNVFDNVAFGL---TVLP 103
Query: 120 NVSDVEKDELVRRALESVGLNPREILGK-FPHQLSGGQLQRILIARALLVEPSLLIADEA 178
K ++ + E + L L K +PHQLSGGQ QRI +ARAL VEP LL+ DE
Sbjct: 104 KSERPSKGQIRAKVEELLKLVQLSHLAKSYPHQLSGGQRQRIALARALAVEPKLLLLDEP 163
Query: 179 VSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEK 238
LDA R ++ L + N G + I +THD +SD+I++M G I + G E
Sbjct: 164 FGALDAKVRKELRTWLRDIHHNLGVTSILVTHDQEEALEVSDEIVVMNHGKIEQTGSAEA 223
Query: 239 VFDNPLHPYTKMLL 252
++ P + + L
Sbjct: 224 IYRKPENAFVTEFL 237
>gi|10955070 agtA [Agrobacterium tumefaciens]
>gi|6689864|gb|AAF23877.1|AF117204_2 (AF242881) agtA
[Agrobacterium tumefaciens]
Length = 359
Score = 124 bits (308), Expect = 2e-27
Identities = 89/298 (29%), Positives = 144/298 (47%), Gaps = 20/298 (6%)
Query: 22 VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKL 81
V AVDNV+ I +GE +L+G SGSGKTT+ L+ P G++L G + K
Sbjct: 21 VTAVDNVSLDISQGEFFALLGSSGSGKTTLLTLLAGFDNPNEGQVLMSGVSVSDVPPHK- 79
Query: 82 MNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKNVSDVEKDELVRRALESVGLNP 141
+ + VFQ+ +A F L + V + ++ V+ E++E V+ AL V L+
Sbjct: 80 -----RQIGVVFQN-YALFPHLTAAENV---AYPLRMRGVARHEREERVKAALALVNLSD 130
Query: 142 REILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVLNLLGEFRDNH 201
R LG +P QLSGGQ QR+ +ARAL+ P++L+ DE + LD R + L +
Sbjct: 131 R--LGAYPIQLSGGQQQRVALARALVFSPAILLMDEPLGALDRRLRDQMQQELKRIQHEL 188
Query: 202 GTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLNVK 261
G +VI++THD + ++D+I IM G +++ D E ++ P + + L V
Sbjct: 189 GITVIYVTHDQSEAMAMADRIGIMSAGRLLQVADPEAIYAAPSSHFVARFIGECSILRVS 248
Query: 262 WEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACHLYGGS 319
EG+ +E+ G + + +RPE V + + +G S
Sbjct: 249 --------GTNEGRGYEIAGARQSLPSPANGPFDIVVRPEDVAIRSPSTASIDSFGVS 298
>pir||B81147 sulfate ABC transporter, ATP-binding protein NMB0879 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7226117|gb|AAF41290.1| (AE002440) sulfate ABC
transporter, ATP-binding protein [Neisseria meningitidis
MC58]
Length = 357
Score = 124 bits (308), Expect = 2e-27
Identities = 87/254 (34%), Positives = 128/254 (50%), Gaps = 19/254 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M + +QNL K F + A+ N+ ++ G++VSL+G SG GKTT+ ++I L
Sbjct: 1 MSITIQNLNKHFGN-------FHALKNINLNVPTGKLVSLLGPSGCGKTTLLRIIAGLEN 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRV-FDLVFRTFLK 119
G ILF G+D+ + + + V VFQ +A F + D V F L T L
Sbjct: 54 ADGGNILFDGQDVTA------KHVRERKVGFVFQH-YALFRHMNVFDNVAFGL---TVLP 103
Query: 120 NVSDVEKDELVRRALESVGLNPREILGK-FPHQLSGGQLQRILIARALLVEPSLLIADEA 178
K ++ + E + L L K +PHQLSGGQ QRI +ARAL VEP LL+ DE
Sbjct: 104 KSERPSKGQIRAKVEELLKLVQLSHLAKSYPHQLSGGQRQRIALARALAVEPKLLLLDEP 163
Query: 179 VSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEK 238
LDA R ++ L + N G + I +THD +SD+I++M G I + G E
Sbjct: 164 FGALDAKVRKELRTWLRDIHHNLGVTSILVTHDQEEALEVSDEIVVMNHGKIEQTGSAEA 223
Query: 239 VFDNPLHPYTKMLL 252
++ P + + L
Sbjct: 224 IYRKPENAFVTEFL 237
>gb|AAC24216.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 138
Score = 120 bits (299), Expect = 2e-26
Identities = 66/140 (47%), Positives = 86/140 (61%), Gaps = 8/140 (5%)
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
M+DAS R+ ++NL + RD G SVI+ITHDLA YY+SD+I IM+RG IVE G E+V
Sbjct: 1 MVDASLRMSIVNLFAQLRDQLGVSVIYITHDLATAYYVSDRIAIMFRGDIVEMGSVERVL 60
Query: 241 DNPLHPYTKMLLESV--PDLNVKW--EFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCW 296
+P HPYT++L ES+ PD KW E + E EE + KGCKFA RC C
Sbjct: 61 TDPKHPYTRLLRESIPEPDPEKKWKEEITIADTEYEE---YLRKGCKFAGRCPEVMSICR 117
Query: 297 KIRPEPVEVEKNHWVACHLY 316
+ +P + V + V CHLY
Sbjct: 118 EEKPPEIMV-GDSMVRCHLY 136
>gi|7524830 sulfate transport system permease protein [Chlorella vulgaris]
>gi|3023607|sp|P56344|CYSA_CHLVU PROBABLE SULFATE
TRANSPORT ATP-BINDING PROTEIN CYSA
>gi|7442559|pir||T07260 sulfate transport ATP-binding
protein - Chlorella vulgaris chloroplast
>gi|2224423|dbj|BAA57907.1| (AB001684) sulfate transport
system permease protein [Chlorella vulgaris]
Length = 236
Score = 120 bits (297), Expect = 3e-26
Identities = 77/252 (30%), Positives = 135/252 (53%), Gaps = 19/252 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M + ++N++K F G +Q A+D V IK G +V L+G SGSGK+T+ +++ L K
Sbjct: 1 MSILIENISKRF-----GSFQ--ALDRVNLEIKNGSLVGLLGPSGSGKSTLLRVLAGLEK 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P SG+I +G+D M + + VFQ+ +A F L + V F ++
Sbjct: 54 PDSGRIWLEGQDATQ------MKLQDREIGFVFQN-YALFPHLTVSENV---AFGLEIQK 103
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
+ + K + V L+ + L + +P+QLSGGQ QR+ +ARAL +EP +L+ DE +
Sbjct: 104 IDSLLKKKRVNELLKLMQLE--KFGDSYPNQLSGGQRQRVALARALAMEPKVLLLDEPFA 161
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
LDA R + + L E + +F+THD + ++ +I+++ G I++ G +++
Sbjct: 162 ALDAKIRKQLRSWLRELHHKISVTTVFVTHDYSEAMELAQEIVLLENGKIIQIGSAQELS 221
Query: 241 DNPLHPYTKMLL 252
D+P + + L
Sbjct: 222 DHPTNTFVTNFL 233
>dbj|BAB06849.1| (AP001517) sulfate ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 357
Score = 120 bits (297), Expect = 3e-26
Identities = 86/258 (33%), Positives = 136/258 (52%), Gaps = 21/258 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M + +QN++K F G +Q A+ ++ SI+ GE+V+L+G SGSGKT++ ++I L
Sbjct: 1 MSIVIQNVSKSF-----GSFQ--ALADINLSIETGELVALLGPSGSGKTSLLRIIAGLEA 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQA--VFQDPFASFNPLYKVDRV-FDLVFRTF 117
G I F KDK+ + + Q VFQ +A F + D + + L +
Sbjct: 54 ADQGDIYFH--------KDKVTQTHAASRQVGFVFQH-YALFPHMTVADNISYGLRVKPR 104
Query: 118 LKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
+ S E E VR L V L + ++P QLSGGQ QRI +ARAL VEP +L+ DE
Sbjct: 105 KERPSKKEIAEKVRELLALVKLEGMD--DRYPAQLSGGQRQRIALARALAVEPKVLLLDE 162
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTE 237
LDA R D+ L + + + +F+THD +SD++++M +G I + G +
Sbjct: 163 PFGALDAKVRKDLRKWLRKLHNEFQVTSVFVTHDQEEALDVSDRVVVMNQGKIEQVGSPD 222
Query: 238 KVFDNPLHPYTKMLLESV 255
+V++ P P+ L +V
Sbjct: 223 EVYEQPKSPFVYDFLGNV 240
>gi|11466425 probable transport protein [Mesostigma viride]
>gi|7259568|gb|AAF43869.1|AF166114_81 (AF166114)
probable transport protein [Mesostigma viride]
Length = 348
Score = 118 bits (292), Expect = 1e-25
Identities = 80/253 (31%), Positives = 132/253 (51%), Gaps = 21/253 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M + + N++K F G +Q A++++ IK G I++L+G SGSGK+T+ ++I L
Sbjct: 1 MSILIDNISKKF-----GNFQ--ALNHINLEIKSGSIIALLGPSGSGKSTLLRIIAGLDT 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFD-LVFRTFLK 119
P G I G++ + +N+ VFQ+ L+K V+D + F L+
Sbjct: 54 PDEGTIWISGKNASGYSIQS------RNIGFVFQN-----YALFKNMTVYDNIAFGLELR 102
Query: 120 NVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
+S + V + LE V L + + ++P QLSGGQ QRI +ARAL +EP +L+ DE
Sbjct: 103 RISFNDISRKVNKLLELVQL--QNLGHRYPAQLSGGQRQRIALARALAIEPKVLLLDEPF 160
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
LDA R ++ L + + + I +THD I+D+I++ G I + G + +
Sbjct: 161 GALDARVRKNLRAWLRDLHNKFSITTIIVTHDQQEAMEIADEIVVFNSGRIEQIGKPQDI 220
Query: 240 FDNPLHPYTKMLL 252
+D P P+ LL
Sbjct: 221 YDQPATPFVFSLL 233
>sp|P38045|NRTC_SYNP7 NITRATE TRANSPORT ATP-BINDING PROTEIN NRTC >gi|419629|pir||S30893
nrtC protein - Synechococcus sp. (strain PCC 7942)
>gi|48971|emb|CAA43811.1| (X61625) nitrate transporter
[Synechococcus sp.] >gi|445047|prf||1908370B nitrate
transporter [Synechococcus sp.]
Length = 659
Score = 117 bits (291), Expect = 1e-25
Identities = 74/239 (30%), Positives = 126/239 (51%), Gaps = 15/239 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+ L V ++ ++F L GG Q A+ +V+ +I+ GE +SL+G SG GK+T+ LI L +
Sbjct: 3 VFLAVDHVHQVFD--LPGGGQYIALKDVSLNIRPGEFISLIGHSGCGKSTLLNLIAGLAQ 60
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P+SG I+ +G + D+++ VFQ+ S P V + L + L +
Sbjct: 61 PSSGGIILEGRQVTEPGPDRMV---------VFQN--YSLLPWRTVRQNIALAVDSVLHD 109
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
+ E+ ++ ++ VGL R K+PH++SGG QR+ IAR L + P LL+ DE
Sbjct: 110 RNRTERRTIIEETIDLVGL--RAAADKYPHEISGGMKQRVAIARGLAIRPKLLLLDEPFG 167
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
LDA TR ++ L G + + +THD+ +SD+++++ G + G +V
Sbjct: 168 ALDALTRGNLQEQLMRICQEAGVTAVMVTHDVDEALLLSDRVVMLTNGPAAQIGQILEV 226
>dbj|BAB06418.1| (AP001516) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 251
Score = 115 bits (286), Expect = 6e-25
Identities = 66/217 (30%), Positives = 121/217 (55%), Gaps = 8/217 (3%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++LE +L K++ G G +D V+ +K+G+ ++++G SGSGKTT+ L+ +
Sbjct: 2 IILEANHLHKVYGEG--GTRTTVGLDQVSLRVKKGDFLAIMGPSGSGKTTLLNLLSGIDA 59
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PTSG I+ G+DI D ++L + K + VFQ+ FN L + +++ L+
Sbjct: 60 PTSGTIVINGDDISKMDGNQLALFRRKELGFVFQE----FNLLDSLTVKENIMVPMILEK 115
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
S +E + + G++ + K+P+ LSGGQ QR+ ++RAL+ EPS+L ADE
Sbjct: 116 KSAKHMEEKAKEVMSIFGIDG--LANKYPYHLSGGQQQRVAVSRALVNEPSILFADEPTG 173
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYY 217
LD+ + ++ + +++ T+++ +THD+ Y
Sbjct: 174 NLDSKSSKVIMECFEQIVNHYQTTILLVTHDVFAANY 210
>pir||H82694 sulfate ABC transporter ATP-binding protein XF1347 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9106344|gb|AAF84156.1|AE003966_17 (AE003966) sulfate
ABC transporter ATP-binding protein [Xylella fastidiosa]
Length = 348
Score = 115 bits (284), Expect = 1e-24
Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M + +Q L K F A+ + I++GE+++L+G SGSGKTT+ ++I L
Sbjct: 1 MGIRIQELCKQFED-------FTALAGIDLDIRQGELLALLGPSGSGKTTLLRIIAGLEH 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRV-FDLVFRTFLK 119
+G++LF ED +M+ + V VFQ +A F + + V F L R
Sbjct: 54 ADAGRVLFGDEDA------TMMSVQARRVGFVFQH-YALFKHMSVYENVAFGLRVRRGKA 106
Query: 120 NVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
+ + V L V L+ E ++P QLSGGQ QR+ +ARAL +EP +L+ DE
Sbjct: 107 RWPESQISARVFELLSLVQLDGLE--QRYPMQLSGGQRQRVALARALAIEPRVLLLDEPF 164
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
LDA R D+ L E D G + +F+THD ++D++ I+ +G I + +V
Sbjct: 165 GALDAQVRRDLRRWLREIHDRTGLTTVFVTHDQEEALELADRVAILNQGRIEQVASPAEV 224
Query: 240 FDNPLHPYTKMLLESV 255
++ P P+ + +V
Sbjct: 225 YNRPSSPFVYSFVGAV 240
>dbj|BAB04472.1| (AP001509) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 260
Score = 114 bits (283), Expect = 1e-24
Identities = 72/225 (32%), Positives = 124/225 (55%), Gaps = 9/225 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
MLL+ +N++KI+TSG GG +A+D +K GE V ++G SGSGK+T+ ++ + K
Sbjct: 1 MLLQAENVSKIYTSGK-GGASHQALDQFNLHVKRGEFVGIMGPSGSGKSTLLHILAMIDK 59
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P++G + G ++ + + ++ + K + +FQD FN L ++ +++ L++
Sbjct: 60 PSAGTVKIDGVNMKALSRKEVALFRRKRLGFIFQD----FNLLDTLNVKENILLPLVLES 115
Query: 121 VSDVEKDELVRRALESVG-LNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
V +K E+ RR E G L ++IL K +++SGGQ QR ARAL+ P L++ADE
Sbjct: 116 V---DKAEMERRLQELTGILGIQDILLKRTYEISGGQQQRTAAARALIHNPELILADEPT 172
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIII 224
LD+ + ++ L S++ +THD Y S + I
Sbjct: 173 GNLDSKSATSLMTALEALNREQERSILMVTHDPFAASYCSRIVFI 217
>emb|CAC11826.1| (AL445065) probable sugar ABC transporter, ATP-binding protein
[Thermoplasma acidophilum]
Length = 372
Score = 114 bits (283), Expect = 1e-24
Identities = 76/257 (29%), Positives = 136/257 (52%), Gaps = 21/257 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M + ++NLT + I + N +++GE ++G SGSGKTT+ + I LI
Sbjct: 1 MSVIIENLTARYGDKYI-------LKNFNLRVEDGEFFVILGSSGSGKTTLLRSIAGLIP 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
G+IL G D+ +N+ VFQ+ FA LY V+D +
Sbjct: 54 IDDGRILIDGNDVTDLYPSD------RNIAMVFQN-FA----LYPHMTVYDNISLNL--K 100
Query: 121 VSDVEKDELVRRALESVG-LNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
+ V KDE+ ++ + L+ + L K+P QLSGG+ QR+ IARA++ +PS+ + DE +
Sbjct: 101 IKHVPKDEIKKKVSDVAEMLHISQHLQKYPRQLSGGEQQRVGIARAMVRDPSVFLMDEPL 160
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
S LDA R ++L L F + ++I++ HD ++D+I+++ +G I++ G +++
Sbjct: 161 SNLDAKLRREMLGELRSFHEKVKKTIIYVCHDQDEAMALADRILVLNQGQIMQLGTPDEL 220
Query: 240 FDNPLHPYTKMLLESVP 256
+D+P + + + + P
Sbjct: 221 YDHPANVFVAGFIGNPP 237
>pir||A72401 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4980721|gb|AAD35314.1|AE001707_1 (AE001707)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 266
Score = 114 bits (282), Expect = 2e-24
Identities = 77/241 (31%), Positives = 131/241 (53%), Gaps = 22/241 (9%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M +EV N++ IF G + +A++NV+ I EGE + + G +GSGK+T+ +++ LI+
Sbjct: 1 MRIEVVNVSHIFHRGT--PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE 58
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PTSG +L+ GE ++ +N+ FQ P F +RVFD V
Sbjct: 59 PTSGDVLYDGERKKGYE-------IRRNIGIAFQYPEDQFF----AERVFDEVAFAVKNF 107
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
D + LV++A+E VGL+ + P LSGG+ +R+ IA ++ EP +LI DE +
Sbjct: 108 YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
LD + D+L ++ +++ G +VI I+HD+ D+++++ +G +KVF
Sbjct: 168 GLDREGKTDLLRIVEKWK-TLGKTVILISHDIETVINHVDRVVVLEKG--------KKVF 218
Query: 241 D 241
D
Sbjct: 219 D 219
>gi|11467821 probable transport protein [Nephroselmis olivacea]
>gi|5880750|gb|AAD54843.1|AF137379_66 (AF137379)
probable transport protein [Nephroselmis olivacea]
Length = 343
Score = 113 bits (281), Expect = 2e-24
Identities = 73/247 (29%), Positives = 129/247 (51%), Gaps = 19/247 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M + ++N++K F + RA+D+V +K G +V+LVG SGSGK+T+ ++I L +
Sbjct: 1 MSILIENISKTFGT-------FRALDHVNLEVKAGSLVALVGPSGSGKSTLLRMIAGLER 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
GKI G D K +++ VFQ+ +A F L + F ++
Sbjct: 54 ADEGKIWLAGRDATYAPIQK------RHIGFVFQN-YALFKHLNVAKNIS---FGLEVRQ 103
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
+ + VR L+ + L + ++P QLSGGQ QR+ +ARAL VEP +L+ DE
Sbjct: 104 ANPNQIRSRVRDLLQLIQLE--HMADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFG 161
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
LDA R ++ + L + + +F+THD ++ +I++ +G + + G ++++
Sbjct: 162 ALDARVRRELRSWLRDLHQEMPVTTVFVTHDQQEAMEVAHEIVVFNQGRLEQVGSPQEIY 221
Query: 241 DNPLHPY 247
D+P P+
Sbjct: 222 DHPATPF 228
>pir||C82310 sulfate ABC transporter, ATP-binding protein VC0541 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654969|gb|AAF93709.1| (AE004140) sulfate ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 376
Score = 113 bits (279), Expect = 4e-24
Identities = 76/265 (28%), Positives = 133/265 (49%), Gaps = 19/265 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M + + N++K F Q +A+ ++ I++GE++ L+G SGSGKTT+ ++I L
Sbjct: 1 MSIRLDNISKHFG-------QFQALAPLSLKIEDGEMIGLLGPSGSGKTTLLRIIAGLEG 53
Query: 61 PTSGKILFKGEDIWSFD-KDKLMNYYYKNVQAVFQDPFASFNPLYKVDRV-FDLVFRTFL 118
SG I F+ D+ + +D+ + + ++N +A F + D V F L
Sbjct: 54 ADSGTIHFRNRDVTNVHVRDRRVGFVFQN--------YALFRHMTVADNVAFGLQVMERA 105
Query: 119 KNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEA 178
+ + E + V++ LE V L + ++P QLSGGQ QRI +ARAL +P +L+ DE
Sbjct: 106 QRPNPAEIQKRVKQLLEIVQLG--HLAHRYPEQLSGGQKQRIALARALATQPEVLLLDEP 163
Query: 179 VSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEK 238
LDA R ++ L D G + +F+THD +SD++++M G I + +
Sbjct: 164 FGALDAKVRKELRRWLRSLHDELGFTSVFVTHDQDEALELSDRVVVMSNGRIEQIDSPVE 223
Query: 239 VFDNPLHPYTKMLLESVPDLNVKWE 263
++ P + +V +W+
Sbjct: 224 LYAQPNSRFVFDFFGNVNQFAGEWQ 248
>sp|P16676|CYSA_ECOLI SULFATE TRANSPORT ATP-BINDING PROTEIN CYSA >gi|7428825|pir||QRECSA
sulfate transport ATP-binding protein cysA - Escherichia
coli >gi|1788761|gb|AAC75475.1| (AE000329) ATP-binding
component of sulfate permease A protein; chromate
resistance [Escherichia coli K12]
>gi|1799841|dbj|BAA16296.1| (D90871) sulfate/thiosulfate
transport protein cysA [Escherichia coli]
>gi|1799851|dbj|BAA16305.1| (D90872) sulfate/thiosulfate
transport protein cysA [Escherichia coli]
Length = 365
Score = 112 bits (277), Expect = 7e-24
Identities = 78/260 (30%), Positives = 136/260 (52%), Gaps = 20/260 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M +E+ N+ K F + + +++++ I G++V+L+G SGSGKTT+ ++I L
Sbjct: 1 MSIEIANIKKSFG-------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRV-FDLVFRTFLK 119
TSG I F G D+ ++ + V VFQ +A F + D + F L +
Sbjct: 54 QTSGHIRFHGTDV------SRLHARDRKVGFVFQH-YALFRHMTVFDNIAFGLTVLPRRE 106
Query: 120 NVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
+ V + LE V L + ++P QLSGGQ QR+ +ARAL VEP +L+ DE
Sbjct: 107 RPNAAAIKAKVTKLLEMVQL--AHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPF 164
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
LDA R ++ L + + + +F+THD ++D++++M +G+I + ++V
Sbjct: 165 GALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQADAPDQV 224
Query: 240 FDNPLHPYTKMLLESVPDLN 259
+ P T+ +LE + ++N
Sbjct: 225 WREPA---TRFVLEFMGEVN 241
>dbj|BAB03992.1| (AP001507) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 253
Score = 111 bits (276), Expect = 9e-24
Identities = 73/243 (30%), Positives = 128/243 (52%), Gaps = 14/243 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++L VQ L K + +G +A+ + F +K E VS++G SGSGKTT I + +
Sbjct: 4 IILNVQQLHKDY----VGEVNYKALKGIDFQLKRNEFVSVMGPSGSGKTTFLNCISTIDR 59
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PT+G I ++ + + + L + + VFQD FN ++ + +++ L
Sbjct: 60 PTNGSITINQKNPYELNDEDLAKFRRSELGFVFQD----FNLVHTLTVEENILLPLTLDA 115
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
V+ E + +E +G+ EI+ K ++SGGQ QR+ IARA++ +PSLL+ADE
Sbjct: 116 VNAKEMTSRLAEVVEFLGIE--EIMKKRTFEISGGQKQRVAIARAVIHQPSLLLADEPTG 173
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSI---VEWGDTE 237
LD+ V+ L + TS++ +THD + + ++++I M G + ++ GD +
Sbjct: 174 NLDSKAANSVMTLFQSIHETFQTSLLMVTHDPYVASF-AERVIFMQDGMLYNEIQRGDHK 232
Query: 238 KVF 240
K F
Sbjct: 233 KQF 235
>sp|P57383|LOLD_BUCAI LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PROTEIN LOLD
>gi|10038971|dbj|BAB13006.1| (AP001118) hypothetical ABC
transporter ATP-binding protein ycfv [Buchnera sp. APS]
Length = 228
Score = 111 bits (274), Expect = 1e-23
Identities = 70/218 (32%), Positives = 111/218 (50%), Gaps = 17/218 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++++ NL K + G + + N++F + +G+I ++G+SGSGKTT L+ L
Sbjct: 4 IIIKCINLNKSYKDG---DFTYTILKNISFQLNKGDIAGIIGKSGSGKTTFLHLLAGLEN 60
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPF----ASFNPLYKVDRVFDLVFRT 116
PTSG ILF G S +K+ + +N++ F F FN L V
Sbjct: 61 PTSGDILFNGRLFSSMSSNKMSKF--RNIELGFIYQFHHLMLDFNILENVSMPL------ 112
Query: 117 FLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
+ N S + +E+ L+ L + + K+P +LSGG+ QR+ +ARA + +PSL+IAD
Sbjct: 113 LISNKSKKDSEEIAYNMLKKFNLEDK--IKKYPSELSGGERQRVAVARAFINKPSLIIAD 170
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLAL 214
E LD + NL+ E ++ TS I THD L
Sbjct: 171 EPTGNLDEDNTNIIFNLITELNSDYNTSFIIATHDPTL 208
>dbj|BAA05388.1| (D26358) CmpC [Synechococcus sp.]
Length = 663
Score = 110 bits (273), Expect = 2e-23
Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 15/228 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+ + V+N+ K F L GG + A+ + IK+GE +SL+G SG GK+T+ LI L
Sbjct: 3 LFVAVENIEKSFP--LSGGNEYLALKGIDLEIKQGEFISLIGHSGCGKSTLLNLIAGLEL 60
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PT G + +G+ I + D+++ VFQ+ S P V L L++
Sbjct: 61 PTDGAVSLEGQQITAPGPDRMV---------VFQN--YSLFPWLTVRENIALAVDEVLRD 109
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
+ E+ +V ++ VGL K P QLSGG QR+ IAR L P LL+ DE
Sbjct: 110 LPKEERQAIVEEHIQLVGLG--HAADKPPAQLSGGMKQRVAIARGLATRPKLLLLDEPFG 167
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRG 228
LDA TR ++ L + + + + + +THD+ +SD+I+++ G
Sbjct: 168 ALDALTRGNLQEKLMQICEENHVTAVMVTHDVDEAVLLSDRIVMLTNG 215
>pir||G83607 polyamine transport protein PotG PA0302 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946147|gb|AAG03691.1|AE004468_3 (AE004468)
polyamine transport protein PotG [Pseudomonas
aeruginosa]
Length = 384
Score = 110 bits (273), Expect = 2e-23
Identities = 78/260 (30%), Positives = 134/260 (51%), Gaps = 22/260 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+L+++ +TK F L AVD V+ +I +GEI +L+G SGSGK+T+ +++ +
Sbjct: 21 VLVKIDRVTKQFDETL-------AVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFER 73
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PT G+I G+DI Y + + +FQ +A F P V + ++ F
Sbjct: 74 PTEGRIFLDGQDITDLPP------YERPINMMFQS-YALF-PHMSVAQ--NIAFGLKQDG 123
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
+ E DE V L+ V + + + PHQLSGGQ QR+ +AR+L P LL+ DE +
Sbjct: 124 LPKAEIDERVAEMLKLVHMT--QYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMG 181
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
LD R + L E + G + + +THD ++ +I IM+ G I + G ++
Sbjct: 182 ALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIY 241
Query: 241 DNPLHPYTKMLLESVPDLNV 260
+ P ++++ E + ++N+
Sbjct: 242 ETPA---SRLVCEFIGNVNL 258
>pir||S75959 nitrate transport protein C-1 - Synechocystis sp. (strain PCC 6803)
>gi|1001319|dbj|BAA10806.1| (D64006) nitrate transport
protein NrtC [Synechocystis sp.]
Length = 667
Score = 110 bits (272), Expect = 3e-23
Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 15/228 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+ + V N+ K+F+ L G + A+ + IK+GE VSL+G SG GK+T+ +I L
Sbjct: 3 LFVAVDNIDKVFS--LTDGGEYIALKGINLEIKKGEFVSLIGHSGCGKSTLLNMIAGLDL 60
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P+ G + +G+ I DK++ +FQ+ S P V + L +K
Sbjct: 61 PSEGIVTLEGQRIKQPGPDKMV---------IFQN--YSLLPWLTVKQNIALAVDEVMKG 109
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
S E+ +V + VGL + K P +LSGG QR+ IARAL + P LL+ DE
Sbjct: 110 ASAAERKAIVEEHINLVGLG--HAVDKRPGELSGGMKQRVAIARALAIRPKLLLLDEPFG 167
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRG 228
LDA TR ++ L + + + + +THD+ +SD+I+++ G
Sbjct: 168 ALDALTRGNLQEQLMRICEQYQVTAVMVTHDVDEAVLLSDRIVMLTNG 215
>gb|AAA23639.1| (M32101) cysA [Escherichia coli]
Length = 365
Score = 109 bits (269), Expect = 6e-23
Identities = 76/260 (29%), Positives = 135/260 (51%), Gaps = 20/260 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M +E+ N+ K F + + +++++ I G++V+L+G SGSGKTT+ ++I L
Sbjct: 1 MSIEIANIKKSFG-------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRV-FDLVFRTFLK 119
TSG I F G D+ ++ + V VFQ +A F + D + F L +
Sbjct: 54 QTSGHIRFHGTDV------SRLHARDRKVGFVFQH-YALFRHMTVFDNIAFGLTVLPRRE 106
Query: 120 NVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
+ V + LE V L + ++P +SGGQ QR+ +ARAL VEP +L+ DE
Sbjct: 107 RPNAAAIKAKVTKLLEMVQL--AHLADRYPAHVSGGQKQRVALARALAVEPQILLLDEPF 164
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
LDA R ++ L + + + +F+THD ++D++++M +G+I + ++V
Sbjct: 165 GALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQADAPDQV 224
Query: 240 FDNPLHPYTKMLLESVPDLN 259
+ P T+ +LE + ++N
Sbjct: 225 WREPA---TRFVLEFMGEVN 241
>sp|Q44613|LOLD_BUCAP LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PROTEIN LOLD
>gi|2120388|pir||I40068 probable ABC-type transport
protein - Buchnera aphidicola >gi|862629|gb|AAC05797.1|
(U11045) OrfC [Buchnera aphidicola]
>gi|1094932|prf||2107191B ORF C [Buchnera aphidicola]
Length = 229
Score = 108 bits (268), Expect = 7e-23
Identities = 71/213 (33%), Positives = 116/213 (54%), Gaps = 11/213 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++L+ NLTK F ++R ++ ++ I++G+I + G+SGSGK+T+ L+ L K
Sbjct: 5 IILQCINLTKSFYRKK---EEIRTLNKISLKIRKGDITFITGKSGSGKSTLLHLLGGLDK 61
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFD-LVFRTFLK 119
PTSG ILF G + S +++ + +FQ F+ L V + + + +
Sbjct: 62 PTSGSILFDGVSLHSMSSNEIAKLRNLKLGFIFQ-----FHHLLLDFNVLENIAIPSLIS 116
Query: 120 NVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
S E E L+ V L + + K+P +LSGG+ QR+ IARAL+ +PSL+IADE
Sbjct: 117 KKSIQESKEKSYEILKKVHLEKK--INKYPSELSGGERQRVAIARALVNQPSLVIADEPT 174
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDL 212
S LD + + +L+ E N TS + ++HDL
Sbjct: 175 SHLDKNNAKIIFDLIFELNSNLNTSFLIVSHDL 207
>sp|P75957|YCFV_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YCFV
Length = 233
Score = 108 bits (268), Expect = 7e-23
Identities = 76/225 (33%), Positives = 118/225 (51%), Gaps = 15/225 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+LL+ NL K + G + Q + NV+FS+ EGE++++VG SGSGK+T+ L+ L
Sbjct: 4 ILLQCDNLCKRYQEGSV---QTDVLHNVSFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PTSG ++F G+ + + + ++Q F+ L + V L
Sbjct: 61 PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQ-----FHHLLPDFTALENVAMPLL-- 113
Query: 121 VSDVEKDELVRRALE---SVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
+ + E+ RALE +VGL+ R P +LSGG+ QR+ IARAL+ P L++ADE
Sbjct: 114 IGKKKPAEINSRALEMLKAVGLDHRA--NHRPSELSGGERQRVAIARALVNNPRLVLADE 171
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKI 222
LDA + LLGE GT+ + +THDL L +S ++
Sbjct: 172 PTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL 216
>dbj|BAA35937.1| (D90747) Heterocyst maturation protein (devA) homolog [Escherichia
coli]
Length = 263
Score = 108 bits (268), Expect = 7e-23
Identities = 76/225 (33%), Positives = 118/225 (51%), Gaps = 15/225 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+LL+ NL K + G + Q + NV+FS+ EGE++++VG SGSGK+T+ L+ L
Sbjct: 34 ILLQCDNLCKRYQEGSV---QTDVLHNVSFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDT 90
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PTSG ++F G+ + + + ++Q F+ L + V L
Sbjct: 91 PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQ-----FHHLLPDFTALENVAMPLL-- 143
Query: 121 VSDVEKDELVRRALE---SVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
+ + E+ RALE +VGL+ R P +LSGG+ QR+ IARAL+ P L++ADE
Sbjct: 144 IGKKKPAEINSRALEMLKAVGLDHRA--NHRPSELSGGERQRVAIARALVNNPRLVLADE 201
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKI 222
LDA + LLGE GT+ + +THDL L +S ++
Sbjct: 202 PTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL 246
>pir||C64666 glutamine transport protein glnQ - Helicobacter pylori (strain
26695) >gi|2314330|gb|AAD08217.1| (AE000623) glutamine
ABC transporter, ATP-binding protein (glnQ)
[Helicobacter pylori 26695]
Length = 248
Score = 103 bits (255), Expect = 2e-21
Identities = 73/257 (28%), Positives = 132/257 (50%), Gaps = 21/257 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++LE + L K + + L+ +D + F++ +GE+ ++G SG GK+T K + L K
Sbjct: 3 VILETKGLKKTYQNHLV-------LDGINFTLNKGEVAVILGPSGCGKSTFLKCLNGLEK 55
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
G+ILF+ ++ +K N + + VFQ+ L+ V D + +K
Sbjct: 56 INEGEILFENTNL--NNKATNWNQMRQKIGMVFQN-----YELFPHLNVLDNILLAPMK- 107
Query: 121 VSDVEKDELVRRALE---SVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
V KDE++ +A+E VGL ++ +P +LSGGQ QR+ I R+L + P +++ DE
Sbjct: 108 VQKRSKDEVISQAIELLKRVGLEHKQ--QAYPKELSGGQKQRVAIVRSLCMRPKIMLFDE 165
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTE 237
+ LD +VL ++ E G S++ +TH++ I+ KI+ G I E + +
Sbjct: 166 VTASLDPEMVKEVLEVILELATT-GMSMVIVTHEMKFAQKIAHKIVFFDSGKIAEENNAK 224
Query: 238 KVFDNPLHPYTKMLLES 254
+ F++P + LE+
Sbjct: 225 EFFNHPKSQRAQKFLET 241
>dbj|BAB04188.1| (AP001508) phosphonates transport system [Bacillus halodurans]
Length = 247
Score = 103 bits (255), Expect = 2e-21
Identities = 76/250 (30%), Positives = 130/250 (51%), Gaps = 23/250 (9%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M+L V+ L K++ G +G + + SI+ GE++S++G SG+GK+T + I RL++
Sbjct: 4 MILRVEGLKKVYPDGTVG------IKEINTSIRRGELISVIGPSGAGKSTFLRSINRLVE 57
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PTSG I +GE+I + + K + + + VFQ +N L K V V L
Sbjct: 58 PTSGAIFVEGENICNA-RGKKLRQMRRKIGMVFQH----YN-LIKRSSVLQNVLHGRLGY 111
Query: 121 VSDVE------KDELVRRAL---ESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPS 171
+S ++ + +RAL + VGL + + K +LSGGQ QR+ IARA+ P+
Sbjct: 112 MSTIKGGLGRFHESDTKRALSILKRVGLEEQAL--KRADELSGGQQQRVGIARAIAQNPT 169
Query: 172 LLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIV 231
L++ADE ++ LD + +VL+ + G + + H + +D++I + G IV
Sbjct: 170 LILADEPIASLDPTASENVLHYMKTICQEEGITTVVNLHQVEFAKKFADRMIGIKAGKIV 229
Query: 232 EWGDTEKVFD 241
G ++ D
Sbjct: 230 FDGTPRELTD 239
>gb|AAK40988.1| ABC transporter, ATP binding protein. [Sulfolobus solfataricus]
Length = 246
Score = 102 bits (253), Expect = 4e-21
Identities = 72/238 (30%), Positives = 128/238 (53%), Gaps = 25/238 (10%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+L++ +L K++ + I + A+ VT + +GE + + G SGSGKTT+ L+ L
Sbjct: 18 ILIDAMDLKKVYKTKNI---EYVALRGVTLKVNKGEFLVIAGPSGSGKTTLLDLLGLLDS 74
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P++GKI+ G D+ +FD+D+ + + + VFQ S+N + + T L+N
Sbjct: 75 PSAGKIIIDGIDVTNFDEDERAIFRRRYIGFVFQ----SYNLI---------TYLTVLEN 121
Query: 121 VS------DVEKDELVRRALESVGLNPR--EILGKFPHQLSGGQLQRILIARALLVEPSL 172
V + + +A E + + P E+ K P++LSGGQ QR+ IARAL +P +
Sbjct: 122 VELALAAIGIPVWKRREKAEEILSMIPGMLELKNKKPNELSGGQQQRVAIARALANDPKI 181
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSI 230
L+ADE + LD+ T ++ L+ + + ++I THD + Y +D+I+ + G +
Sbjct: 182 LLADEPTANLDSKTGEAIVELMKKLNEEKKVTIIMATHDPDMMRY-ADRIVYIRDGLV 238
>emb|CAB57615.1| (Y18930) ABC transporter/ATP-binding protein [Sulfolobus
solfataricus]
Length = 246
Score = 102 bits (253), Expect = 4e-21
Identities = 72/238 (30%), Positives = 128/238 (53%), Gaps = 25/238 (10%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+L++ +L K++ + I + A+ VT + +GE + + G SGSGKTT+ L+ L
Sbjct: 18 ILIDAMDLKKVYKTKNI---EYVALRGVTLKVNKGEFLVIAGPSGSGKTTLLDLLGLLDS 74
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P++GKI+ G D+ +FD+D+ + + + VFQ S+N + + T L+N
Sbjct: 75 PSAGKIIIDGIDVTNFDEDERAIFRRRYIGFVFQ----SYNLI---------TYLTVLEN 121
Query: 121 VS------DVEKDELVRRALESVGLNPR--EILGKFPHQLSGGQLQRILIARALLVEPSL 172
V + + +A E + + P E+ K P++LSGGQ QR+ IARAL +P +
Sbjct: 122 VELALAAIGIPVWKRREKAEEILSMIPGMLELKNKKPNELSGGQQQRVAIARALANDPKI 181
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSI 230
L+ADE + LD+ T ++ L+ + + ++I THD + Y +D+I+ + G +
Sbjct: 182 LLADEPTANLDSKTGEAIVELMKKLNEEKKVTIIMATHDPDMMRY-ADRIVYIRDGLV 238
>pir||A64703 ABC transporter, ATP-binding protein - Helicobacter pylori (strain
26695) >gi|2314642|gb|AAD08506.1| (AE000646) ABC
transporter, ATP-binding protein (HI1087) [Helicobacter
pylori 26695]
Length = 261
Score = 102 bits (252), Expect = 6e-21
Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 18/238 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+L+EV++L F S +I V+FS+ +GE+++++G SGSGK+T+ + ++ L +
Sbjct: 8 VLIEVKDLHSAFGSTIIHR-------GVSFSVHKGEVMAILGGSGSGKSTLLRCMILLNR 60
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PT G++L GEDIW K+ + FQ F LY V + V L+
Sbjct: 61 PTKGEVLLFGEDIWKL-KEAEQQKIFNRCGICFQ-----FGALYSSLTVLENV-GVMLEQ 113
Query: 121 VSDVEK---DELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
K +E+ + +E VGL PR +P++LSGG +R+ IARA+ P +L DE
Sbjct: 114 YGAYSKKIVEEISKMWIEKVGLPPR-AYHLYPYELSGGMKKRVGIARAMATNPEILFLDE 172
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
S LD + L+ +++ +V+ ITHDL + D+ I++ G + GD
Sbjct: 173 PTSGLDPYSAGKFDELIMTLKESLQLTVVMITHDLDSVHDCVDRFIMLKDGLLEFNGD 230
>pir||H71817 probable amino acid ABC transporter, ATP-binding protein -
Helicobacter pylori (strain J99)
>gi|4155970|gb|AAD06934.1| (AE001558) putative amino
acid abc transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 261
Score = 102 bits (252), Expect = 6e-21
Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 18/238 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+L+EV++L F S +I V+FS+ +GE+++++G SGSGK+T+ + ++ L +
Sbjct: 8 VLIEVKDLHSAFGSTIIHR-------GVSFSVHKGEVMAILGGSGSGKSTLLRCMILLNR 60
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PT G++L GEDIW K+ + FQ F LY V + V L+
Sbjct: 61 PTKGEVLLFGEDIWKL-KEAEQQKIFNRCGICFQ-----FGALYSSLTVLENV-GVMLEQ 113
Query: 121 VSDVEK---DELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
K +E+ + +E VGL PR +P++LSGG +R+ IARA+ P +L DE
Sbjct: 114 YGAYSKKIVEEISKMWIERVGLPPR-AYHLYPYELSGGMTKRVGIARAMATNPEILFLDE 172
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
S LD + L+ +++ +V+ ITHDL + D+ I++ G + GD
Sbjct: 173 PTSGLDPYSAGKFDELIMTLKESLQLTVVMITHDLDSVHDCVDRFIMLKDGLLEFNGD 230
>pir||D81435 probable iron-uptake ABC transport system ATP-binding protein
Cj0173c [imported] - Campylobacter jejuni (strain NCTC
11168) >gi|6967666|emb|CAB72656.1| (AL139074) putative
iron-uptake ABC transport system ATP-binding protein
[Campylobacter jejuni]
Length = 302
Score = 102 bits (251), Expect = 7e-21
Identities = 78/271 (28%), Positives = 146/271 (53%), Gaps = 39/271 (14%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M+LE++NL+K F +++A++N+ +KEGE +S++G SGSGK+T+ ++I +L +
Sbjct: 1 MMLEIKNLSKNFG-------KIQALENINLHVKEGEFLSILGGSGSGKSTLLRIIAKLEQ 53
Query: 61 PTSGKILF-KGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLK 119
+S + KGE V +FQ+ +A F P V++ +++F + K
Sbjct: 54 ASSYDLFSCKGE-----------------VALMFQN-YALF-PHLNVEK--NILFALYDK 92
Query: 120 NVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
+K++++ L++ + ++ K ++SGGQ QR+ ARA+ LL+ DE
Sbjct: 93 K----DKNQILNHLLKTFEIE--DLRYKKIDEISGGQAQRVAFARAMARGCKLLLLDEPF 146
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
S LD + + D+ L + +N G + I +THD+ Y +SD+I + +G I+ + +++
Sbjct: 147 SNLDQNLKQDLRRELKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKEL 206
Query: 240 FDNPLHPYTKMLLESVPDLNVKWEFKGIEPE 270
+ P ++L PDLN+ E +E E
Sbjct: 207 YFKPDFKSAQIL----PDLNIIEEKLDLEDE 233
>gb|AAD53162.1|AF176824_5 (AF176824) ATP-binding protein of ABC transporter SrpK
[Synechococcus PCC7942]
Length = 270
Score = 101 bits (250), Expect = 1e-20
Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 21/230 (9%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++L+ ++LTK + SG + V A ++T S+ GEIV L+G SG GK+++ + I L
Sbjct: 18 VILQARSLTKHYRSG---NHNVTAFKDLTLSLHPGEIVCLLGPSGCGKSSLLQAIASLEP 74
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
+G+I F G+ + + + VFQ+P + P V + ++ F LK
Sbjct: 75 IDAGEIQFLGQPL---------QQPHPRIGFVFQEP--ALLPWQTVWQ--NVSFGLELKQ 121
Query: 121 ---VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
+S+ ++ + AL VGL E +P QLSGG QR+ +ARAL P LL+ DE
Sbjct: 122 GPQLSEAQRRSRISDALNRVGLAGAE--RAYPRQLSGGMAQRVALARALARHPHLLLLDE 179
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYR 227
+ LDA R+++ LL E +V+ +THDL + D+II+M+R
Sbjct: 180 PFAALDAIHRLEMQKLLLEAIAGQTEAVLMVTHDLDEALLLGDRIILMHR 229
>gb|AAK41273.1| Sugar ABC transporter [Sulfolobus solfataricus]
Length = 324
Score = 100 bits (247), Expect = 2e-20
Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 22/255 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M +E+ ++ K + ++ ++ +T I+ GE ++G SG GK+T+ K++ + K
Sbjct: 1 MTVELIDIVKKYGKNIV-------INGITEKIETGEFFVILGPSGEGKSTLLKILAGIEK 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
GKI+ G DI +K +NV VFQ+ N + + F L R K
Sbjct: 54 LDKGKIIADGADITDKPPEK------RNVAMVFQNYALYPNMSVRDNIAFPLKMRGMKKE 107
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
E E V +A + +G++ EIL K Q+SGGQ QR+ +ARA++ PS + DE +S
Sbjct: 108 ----EIIERVEKAAKLLGIS--EILDKKVTQISGGQQQRVALARAIVRNPSYFLLDEPLS 161
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
LDA R L + + I++THD ++D+I I+++G + D + ++
Sbjct: 162 NLDARVRTTARGELKRIQKELKGTFIYVTHDQKEALSLADRIAILHKGKFEQVSDPKTLY 221
Query: 241 DNPLHPYTKMLLESV 255
+ +P TK + + V
Sbjct: 222 E---YPKTKWVAQFV 233
>pir||B82185 glycerol-3-phosphate ABC transporter, ATP-binding protein VC1552
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9656059|gb|AAF94706.1| (AE004233)
glycerol-3-phosphate ABC transporter, ATP-binding
protein [Vibrio cholerae]
Length = 393
Score = 100 bits (246), Expect = 3e-20
Identities = 76/259 (29%), Positives = 133/259 (51%), Gaps = 19/259 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++L+++ L K + +G +AV V SI +GE + LVG SG GK++I + I L
Sbjct: 21 VMLDIKQLVKTYDNGH------QAVKGVDLSIHQGEFIVLVGPSGCGKSSILRSIAGLES 74
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
TSG+I G + D +K N +++ VFQ+ LY V+D + LKN
Sbjct: 75 ITSGEIHLAGRRV---DNEKPAN---RDIAMVFQN-----YALYPHMSVYDNLAYG-LKN 122
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
++ + A + L E L + P +LSGGQ QR+ + RA++ +P L + DE +S
Sbjct: 123 RGVDKQTIAAKIAKVAKTLKIEEYLDRKPAKLSGGQRQRVAMGRAIVRDPQLFLFDEPLS 182
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
LDA+ R + + + + G + +++THD ++D+I+++ +G I + G +V+
Sbjct: 183 NLDAALRAHMRLEIKKLQRELGVTSVYVTHDQVEAMTLADRIVVVKQGEIEQVGTPAEVY 242
Query: 241 DNPLHPYTKMLLESVPDLN 259
P + + S P +N
Sbjct: 243 HQPASTFVASFIGS-PAMN 260
>pir||A70001 ABC transporter (ATP-binding protein) homolog ytsC - Bacillus
subtilis >gi|2293177|gb|AAC00255.1| (AF008220)
transporter [Bacillus subtilis]
>gi|2635522|emb|CAB15016.1| (Z99119) similar to ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 253
Score = 98.3 bits (241), Expect = 1e-19
Identities = 60/224 (26%), Positives = 114/224 (50%), Gaps = 9/224 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++LE + K + + L ++ +D I++GE VS++G SGSGKTT+ ++ + +
Sbjct: 2 VILEANKIRKSYGNKLNKQEVLKGID---IHIEKGEFVSIMGASGSGKTTLLNVLSSIDQ 58
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
+ G I G D+ + + +L + +++ +FQD +N L + +++ +
Sbjct: 59 VSHGTIHINGNDMTAMKEKQLAEFRKQHLGFIFQD----YNLLDTLTVKENILLPLSITK 114
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
+S E + + +G+ E+ K+P+++SGGQ QR RA + +PS++ ADE
Sbjct: 115 LSKKEANRKFEEVAKELGIY--ELRDKYPNEISGGQKQRTSAGRAFIHDPSIIFADEPTG 172
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIII 224
LD+ + D+LN L + ++I +THD Y I I
Sbjct: 173 ALDSKSASDLLNKLSQLNQKRNATIIMVTHDPVAASYCGRVIFI 216
>pir||D81303 branched-chain amino-acid ABC transport system ATP-binding protein
Cj1015c [imported] - Campylobacter jejuni (strain NCTC
11168) >gi|6968451|emb|CAB73271.1| (AL139077)
branched-chain amino-acid ABC transport system
ATP-binding protein [Campylobacter jejuni]
Length = 256
Score = 96.0 bits (235), Expect = 5e-19
Identities = 72/243 (29%), Positives = 126/243 (51%), Gaps = 25/243 (10%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M+LE++ ++K F S V+A++ +F I EGEI +L+G +G+GKTT+ +I K
Sbjct: 1 MILELKQISKSFGS-------VKAINETSFKINEGEIFALIGPNGAGKTTLFNIITGNYK 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQD--PFASFNPLYKVDRVFDL-----V 113
P+SG + F GE I K++ + + FQ+ F+S N L V F+ +
Sbjct: 54 PSSGSVEFLGERIDHLKPHKIV---HLGIARTFQNIRLFSSMNVLENVLIGFNKQMKYNI 110
Query: 114 FRTFLK-----NVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLV 168
F FL + V K E LE +G+ E + LS GQ +++ IARA+
Sbjct: 111 FEAFLHLGRFGKIEQVFK-EKAYAILEELGI--AEFAYEKATSLSYGQQRKVEIARAMAT 167
Query: 169 EPSLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRG 228
+P LL+ DE + +++S ++ L+ + R ++ SV+ I HD+ + D+++++ G
Sbjct: 168 QPRLLLLDEPAAGMNSSESDELAGLIFKLRKDYKISVLLIEHDMKFVNKLCDRVLVLDYG 227
Query: 229 SIV 231
+
Sbjct: 228 KTI 230
>sp|P45092|ARTP_HAEIN ARGININE TRANSPORT ATP-BINDING PROTEIN ARTP >gi|1073857|pir||D64188
arginine transport protein artP - Haemophilus influenzae
(strain Rd KW20) >gi|972900|gb|AAA95977.1| (U17295)
ArtP [Haemophilus influenzae] >gi|1574105|gb|AAC22831.1|
(U32797) arginine ABC transporter, ATP-binding protein
(artP) [Haemophilus influenzae Rd]
Length = 243
Score = 95.2 bits (233), Expect = 9e-19
Identities = 66/248 (26%), Positives = 129/248 (51%), Gaps = 21/248 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M + V+NL + S + + ++ +EG+ V L+G SG+GK+T+ + + L
Sbjct: 1 MAIRVKNLNFFYGSS-------QTLFDINLEAEEGDTVVLLGPSGAGKSTLIRTLNLLEV 53
Query: 61 PTSGKILFKGEDIW---SFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFD--LVFR 115
P SG++ + + K + ++V VFQ + + L ++ + + + R
Sbjct: 54 PKSGELSIANNEFNLSNAMANPKAIQQLRQDVGMVFQQ-YHLWPHLTVIENLIEAPMKVR 112
Query: 116 TFLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
+N + + EL++R L ++ +FP LSGGQ QR+ IARAL+++P +L+
Sbjct: 113 GVSENEAKTDAMELLKR------LRLEQLADRFPLHLSGGQQQRVAIARALMMKPQVLLF 166
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
DE + LD V++++ E ++ G + + +TH++ + ++ K++ M +G IVE G
Sbjct: 167 DEPTAALDPEITAQVVDIIKELQET-GITQVIVTHEVNVAQKVATKVVYMEQGKIVEMGS 225
Query: 236 TEKVFDNP 243
+ F+NP
Sbjct: 226 AD-CFENP 232
>gb|AAG34709.1|AF320001_2 (AF320001) putative ATP binding protein of ABC transporter
[Acinetobacter sp. BD413]
Length = 228
Score = 95.2 bits (233), Expect = 9e-19
Identities = 71/239 (29%), Positives = 116/239 (47%), Gaps = 23/239 (9%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++LE +++ K FT G V + ++ I GE VS+VG SGSGK+T+ ++ L +
Sbjct: 4 IVLEAKDVYKHFTDGKS---TVEVIKGLSLKIAAGEFVSIVGASGSGKSTLLHILGGLDQ 60
Query: 61 PTSGKILFK-------GEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLV 113
PT G++ GE F +++ + + Y+ F F+ L V L
Sbjct: 61 PTQGQVFLNEQRFDNLGEAERGFKRNQYLGFVYQ-----FHHLLPEFSALENVAMPLMLR 115
Query: 114 FRTFLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLL 173
T K V + L+ VGL+ R L P +LSGG+ QR+ +ARAL+ P+++
Sbjct: 116 ADTNYKEVK-----QQAEHLLDRVGLSHR--LTHKPGELSGGERQRVALARALVARPAVM 168
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
+ADE LD T + LL + + +++ +THD L +D I+ M G V+
Sbjct: 169 LADEPTGNLDRKTAFGIFELLSDLKQEFNMAMLIVTHDEQLA-QSADSILHMQDGLWVD 226
>pir||D71179 probable sugar ABC transporter - Pyrococcus horikoshii
>gi|3258144|dbj|BAA30827.1| (AP000007) 498aa long
hypothetical sugar transport ATP-binding protein
[Pyrococcus horikoshii]
Length = 498
Score = 92.4 bits (226), Expect = 6e-18
Identities = 69/261 (26%), Positives = 134/261 (50%), Gaps = 17/261 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+ +E++ + K++ G++ A+ V F+++EGEI L+GE+G+GK+T+ +++ IK
Sbjct: 2 LAVEMRRIYKVYPDGVV------ALKGVDFTVEEGEIHGLLGENGAGKSTLMRILYGEIK 55
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PT G++ G+ + + + + K + V+Q + P + V L T N
Sbjct: 56 PTKGEVKVFGDKV---EFNGPWDAIRKGIAMVYQ--HFTLIPTFTVLENLYLSMLTINPN 110
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
++ E +L + ++ +G + L L G QR+ I +AL+ +LI DE S
Sbjct: 111 ITINEVRKLAKEKMKDIGFSVP--LDDVVEDLPIGIQQRVEIIKALMANAKILILDEPTS 168
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
+L ++ L + ++N G +VIFITH L I+D++ ++ RG +V T++V
Sbjct: 169 VLTPLEVEELFKTLRKLKEN-GITVIFITHKLKEVKEITDRVTVLRRGEVVGVAKTKEVS 227
Query: 241 DNPLHPYTKMLLESVPDLNVK 261
+ L KM+++ + +K
Sbjct: 228 ERDL---AKMMVQREIVMEIK 245
Score = 76.9 bits (186), Expect = 3e-13
Identities = 63/227 (27%), Positives = 100/227 (43%), Gaps = 26/227 (11%)
Query: 24 AVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKPTSGKILFKGEDIWSFDKDKLMN 83
AV V+F +KEGEI+ + G G+G+ + + + + + G+I G D+ DK
Sbjct: 271 AVKGVSFELKEGEILGIAGVQGNGQKELAEALAGIRRIEKGRIELLGRDVTELSADK--- 327
Query: 84 YYYKNVQAVFQDPFASFNPLYKVDRVFDL--VFRTFLKNVSDVEKDELVRRALESVGLNP 141
YK A D KV V D+ V L N+ V + R + E
Sbjct: 328 -RYKAGLAYVPDS-------RKVGLVLDMSVVENVILTNLPSVMRGR--RISWEKANKIG 377
Query: 142 REILGKFP----------HQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDVL 191
+EI+ +F LSGG Q++++ R ++ EP ++I E LD +
Sbjct: 378 KEIVERFDVLVSSLSTPIKHLSGGNQQKVMVGREIIREPKVVIVSEPTQGLDIGATEFIR 437
Query: 192 NLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEK 238
L RD G ++ I+ DL +SD+I +MY G I+ G E+
Sbjct: 438 KTLVSLRD-QGKGILLISTDLDEILQLSDRIAVMYEGKIMAIGKVEE 483
>pir||B70127 phosphate ABC transporter, ATP-binding protein (pstB) homolog -
Lyme disease spirochete >gi|2688112|gb|AAC66606.1|
(AE001132) phosphate ABC transporter, ATP-binding
protein (pstB) [Borrelia burgdorferi]
Length = 260
Score = 91.3 bits (223), Expect = 1e-17
Identities = 69/258 (26%), Positives = 131/258 (50%), Gaps = 26/258 (10%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRL-- 58
+++E +NL +T +A++ + I + I +L+G SG GK+T + + R+
Sbjct: 12 VIIETENLNLFYTD-------FKALNKINMKILKNSITALIGPSGCGKSTFLRTLNRMND 64
Query: 59 ----IKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVF 114
IK G ++++G++I+S + D L + + VFQ P +Y ++ +
Sbjct: 65 LVEGIK-IEGNVIYEGKNIYSNNFDILE--LRRKIGMVFQTPNPFLMSIYD-----NISY 116
Query: 115 RTFLKNVSDVEK-DELVRRALESVGL--NPREILGKFPHQLSGGQLQRILIARALLVEPS 171
+ D +K DE+V ++L+ L ++ L LSGGQ QR+ IAR L +EP+
Sbjct: 117 GPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLHTNALSLSGGQQQRLCIARTLAIEPN 176
Query: 172 LLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIV 231
+++ DE S LD + + L+ ++++ ++I +TH++ ISD+ G I
Sbjct: 177 VILMDEPTSALDPISTGKIEELIINLKESY--TIIIVTHNMQQAGRISDRTAFFLNGCIE 234
Query: 232 EWGDTEKVFDNPLHPYTK 249
E T+++F NP + T+
Sbjct: 235 EESSTDELFFNPKNTKTE 252
>dbj|BAB04009.1| (AP001508) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 301
Score = 90.1 bits (220), Expect = 3e-17
Identities = 69/232 (29%), Positives = 115/232 (48%), Gaps = 24/232 (10%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M LE++++TK + + AV + + + GE V L+G +G+GKTT+ K+I ++
Sbjct: 1 MKLEIKSVTKKYK-------EKTAVHDFSMDLLSGECVGLIGPNGAGKTTLIKMITNILD 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PT G IL G+ I ++ Y +Q AS L+F L
Sbjct: 54 PTRGDILLNGKRISEMKRE---IGYLPQYPDFYQWMTASET----------LLFMGQLSG 100
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
+S + + + L VGL E SGG QR+ IA+ALL +PS ++ DE VS
Sbjct: 101 ISKKKLTKSIPEILSKVGLRGEE--NSKVSTFSGGMKQRLGIAQALLHKPSFIVMDEPVS 158
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
LD R +VLN++ E + + ++++ TH LA I ++++++ G +E
Sbjct: 159 ALDPIGRREVLNIIEEIKKD--STILLSTHILADAEEICERLVMIKNGEKIE 208
>pir||A70158 ABC transporter, ATP-binding protein homolog - Lyme disease
spirochete >gi|2688376|gb|AAC66828.1| (AE001151) ABC
transporter, ATP-binding protein [Borrelia burgdorferi]
Length = 277
Score = 89.3 bits (218), Expect = 5e-17
Identities = 68/246 (27%), Positives = 124/246 (49%), Gaps = 24/246 (9%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++L+ N+ K + L AV+ +T +I +GE+V L+G +G+GKTT I+ IK
Sbjct: 38 VVLKADNIIKKYGEKL-------AVNGITINIYKGEVVGLLGPNGAGKTTTFYTIVGFIK 90
Query: 61 PTSGKILFKGEDIWS---FDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTF 117
P +GK+L +I S +++ ++ Y ++F++ N + ++R DL
Sbjct: 91 PNAGKVLINDYNISSLNMYERARIGIVYLPQDASIFRELTVEENIMVALERREDL----- 145
Query: 118 LKNVSDVE-KDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
S E K ELV E + I + + LSGG+ +R IARAL V P L+ D
Sbjct: 146 ----SKAERKIELVNLLKE---FEIKRIQSQKAYTLSGGERRRAEIARALAVNPYFLLLD 198
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
E + +D D+ N++ ++ + V+ H++ + I D+ I+Y+G +++ GD
Sbjct: 199 EPFAGIDPIAIGDIKNIIKILKEKN-IGVLITDHNVRDAFDIIDRAYIVYQGQVLDEGDV 257
Query: 237 EKVFDN 242
+ + +
Sbjct: 258 DYIISS 263
>pir||F72405 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4980701|gb|AAD35296.1|AE001705_7 (AE001705)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 233
Score = 89.3 bits (218), Expect = 5e-17
Identities = 64/226 (28%), Positives = 114/226 (50%), Gaps = 40/226 (17%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++L+V+ L K F V+ ++N FS+ +GE V+L+G SG GKTT +++
Sbjct: 6 VILKVEGLRKDFNG-------VKVIENWGFSVGKGERVALLGPSGCGKTTFLRIV----- 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
SG ++G+ + + + VFQ+P + ++T +N
Sbjct: 54 --SGLEDYQGK----------VKVFTDKIGYVFQEPRL-------------IPWKTITEN 88
Query: 121 VSDVEKD-ELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
+ + +D + + LE V L E +P QLS G QR+ RALLV+P LL+ DE
Sbjct: 89 LMLIRRDTDRIASLLEKVELKGFE--NHYPWQLSEGMKQRVNFVRALLVDPDLLLLDEPF 146
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIM 225
LD T++ V++LL + S++F+TH++ ++S++I ++
Sbjct: 147 DALDLKTKMKVMDLLVDLWQKRRFSIVFVTHNVKEAVFLSERIFLL 192
>sp|Q57243|YC72_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN HI1272
>gi|1074079|pir||F64113 ferric enterobactin transport
ATP-binding protein homolog HI1272 - Haemophilus
influenzae (strain Rd KW20) >gi|1574727|gb|AAC22920.1|
(U32807) ABC transporter, ATP-binding protein
[Haemophilus influenzae Rd]
Length = 263
Score = 88.2 bits (215), Expect = 1e-16
Identities = 68/235 (28%), Positives = 113/235 (47%), Gaps = 14/235 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
MLLE QNL IG V ++ F+++E +I L+G +G+GK+T K +L L
Sbjct: 10 MLLETQNLA-------IGYEGKTLVQHIQFTLEENQICCLLGANGAGKSTFLKTLLGLQP 62
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P G I+++G+ + + +L + QA + P D V + FLK
Sbjct: 63 PIGGDIVWQGKSLSDYSPTELARHIAYVPQA-----HSHLFPFLVQDMVM-MGRSAFLKW 116
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
+K +L + L + ++ HQLSGG+ Q +LIARA+ + LLI DE S
Sbjct: 117 YQTPKKSDLDLALMALQELEIAHLAQRYYHQLSGGEKQLVLIARAIAQQAKLLIMDEPTS 176
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGD 235
LD +I VL + + + ++I TH+ ++ D I+++ + + GD
Sbjct: 177 SLDFGNQIRVLEKIKQLQ-KQNIALIISTHNPQQAAFLGDNIVLLDQQFGFQQGD 230
>sp|P73265|NRTD_SYNY3 PUTATIVE NITRATE TRANSPORT ATP-BINDING PROTEIN NRTD
>gi|7445985|pir||S77446 nitrate transport protein D-2 -
Synechocystis sp. (strain PCC 6803)
>gi|1652371|dbj|BAA17293.1| (D90905) nitrate transport
protein NrtD [Synechocystis sp.]
Length = 266
Score = 88.2 bits (215), Expect = 1e-16
Identities = 71/225 (31%), Positives = 110/225 (48%), Gaps = 18/225 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M LE+ +L ++F G G V A+ N+ I+ GE V VG SGSGK+T+ +LI L
Sbjct: 1 MHLEITDLNRVFV-GKRGS--VVALKNINMHIETGEFVCAVGASGSGKSTLLRLIAGLDT 57
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PTSG I G+ + D+ M VFQ S P V + ++ F L+
Sbjct: 58 PTSGTINVDGQRVTGPGADRGM---------VFQH--YSLFPWMTVRQ--NVEFGLKLQG 104
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
S E+ + L+ VGL +P +LSGG QR+ IAR+L P +L+ DE
Sbjct: 105 CSQKERFDTASYYLDVVGLI--NFSEAYPRELSGGMKQRVAIARSLACHPKVLLMDEPFG 162
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIM 225
LD T+ + L + S++ ITHD+ +++ ++ ++
Sbjct: 163 ALDIQTKERMHEYLIDIWQRLQCSILMITHDVEEAVFLAQRVYVL 207
>pir||D72485 probable high-affinity branched-chain amino acid transport
ATP-binding protein APE2524 - Aeropyrum pernix (strain
K1) >gi|5106229|dbj|BAA81540.1| (AP000064) 242aa long
hypothetical high-affinity branched-chain amino acid
transport ATP-binding protein [Aeropyrum pernix]
Length = 242
Score = 88.2 bits (215), Expect = 1e-16
Identities = 67/245 (27%), Positives = 123/245 (49%), Gaps = 19/245 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++L+V+++ K F GG + A+ V+FS++ GE V L+G +G+GKTT+ +I +
Sbjct: 6 IILDVRDVYKRF-----GG--IEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYM 58
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P G++++KG DI + Y+ +A F PL + + +++ L+
Sbjct: 59 PDRGRVIYKGVDITGWPA-------YRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRT 111
Query: 121 VSDVEKDELVRRALESVGLNPRE-ILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
E E A++ VGL +E IL K L+ + +R+ +ARAL +P LL+ DE
Sbjct: 112 NDIREARERAMEAIDMVGLAGKEDILAK---DLNLIEKKRLELARALATQPELLLLDEIA 168
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
+ L D++ L E G ++I + H + ++++I+++ G + G +V
Sbjct: 169 AGLRPREVDDLVYTLLEI-SKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREV 227
Query: 240 FDNPL 244
N L
Sbjct: 228 ASNKL 232
>emb|CAB94640.1| (AL359215) putative iron transport protein, ATP-binding component.
[Streptomyces coelicolor A3(2)]
Length = 258
Score = 88.2 bits (215), Expect = 1e-16
Identities = 72/235 (30%), Positives = 122/235 (51%), Gaps = 19/235 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M +EV LT + SG R +D+V+ G V LVG +GSGK+T+ + + R ++
Sbjct: 2 MRVEVDGLT-VEMSG------ARVLDDVSLHADSGGFVGLVGPNGSGKSTLLRCVYRALR 54
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFN-PLYKVDRVFDLVFRTFLK 119
PT+G + G+++ S + + + A+ Q+ A F+ + +V + L +
Sbjct: 55 PTAGVVRLGGDELPSLSPRESA----RRLAALPQEAAAEFDFTVAEVVAMGRLPHQGAAA 110
Query: 120 NVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
SD ++ ALE VG + + G+ LSGG+ QR+LIARAL +P +L+ DE
Sbjct: 111 RTSDEDRHACAA-ALEGVGAD--HLTGRGFLTLSGGERQRVLIARALAQQPRILVLDEPT 167
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWG 234
+ LD + +++VL+L+ G +V+ HDL L D++ ++ G IV G
Sbjct: 168 NHLDIAQQLEVLSLVRA----SGPTVLAALHDLNLAALHCDRLHVVDGGRIVASG 218
>pir||E81261 probable ABC transport system ATP-binding protein Cj1647 [imported]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6969064|emb|CAB73635.1| (AL139079) putative ABC
transport system ATP-binding protein [Campylobacter
jejuni]
Length = 240
Score = 87.0 bits (212), Expect = 3e-16
Identities = 68/239 (28%), Positives = 119/239 (49%), Gaps = 12/239 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M+++ QN+ F ++ D V+F IK+ EI ++G SGSGK+ + K +L L
Sbjct: 1 MVIKAQNIITKFGEKIVH-------DGVSFEIKKNEIFGILGGSGSGKSVLLKQMLMLEH 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
G+ G + + +++ + K VFQ FA+ + V + + + +
Sbjct: 54 FDDGEYEILGYKLKNINEEDALALR-KKWGVVFQ--FAALFSFFNVYENIAIPLKEYT-H 109
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
+ + ELV L+ VGLN +L +FP +LSGG +R+ IARAL ++ LL DE S
Sbjct: 110 LDENSIQELVLMKLKMVGLN-ESVLKQFPSELSGGMQKRVAIARALALDSKLLFLDEPTS 168
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
LD + + +L+ E + + ++I +THD + D+ II+ + G E++
Sbjct: 169 GLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKVGFCGTYEEL 227
>pir||D72101 ABC transporter ATPase - Chlamydophila pneumoniae (strain CWL029)
>gi|4376523|gb|AAD18401.1| (AE001610) ABC Transporter
ATPase [Chlamydophila pneumoniae CWL029]
>gi|8163447|gb|AAF73679.1| (AE002211) ABC transporter,
ATP-binding protein [Chlamydophila pneumoniae AR39]
>gi|8978621|dbj|BAA98458.1| (AP002545) ABC transporter
ATPase [Chlamydophila pneumoniae J138]
Length = 226
Score = 86.2 bits (210), Expect = 5e-16
Identities = 69/213 (32%), Positives = 114/213 (53%), Gaps = 14/213 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+L+E +NL+K + + +V+ S+ GE +S+ G SG+GKTT+ L+ L
Sbjct: 3 LLIEAKNLSKTIQQQ---NQNISILTDVSLSLHAGETISITGASGNGKTTLLHLLGTLDV 59
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P+SG + F +D+ + D L N+ +++ VFQ+ + L + D V V L
Sbjct: 60 PSSGSLRFFDKDLKNQD---LANFRNQHIGFVFQNFY-----LLEDDTVLKNVLMPALIA 111
Query: 121 VSDVEKDELV-RRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEA 178
++ K V RALE + L N + + +LSGG+ QR+ IARAL+ EP++L+ADE
Sbjct: 112 RKNISKGSPVYTRALELLDLVNLEDKVRTRCSKLSGGEKQRVAIARALINEPAILLADEP 171
Query: 179 VSMLDASTRIDVLNLLGEFRDNHGTSVIFITHD 211
LD T + NLL E + + ++ +TH+
Sbjct: 172 SGNLDEETSEQIHNLLLE-QASALCGILIVTHN 203
>dbj|BAB04167.1| (AP001508) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 307
Score = 86.2 bits (210), Expect = 5e-16
Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 21/234 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M++E + L KI+ V VD+V + EGE+ +G +GSGKTT+ +++L L+K
Sbjct: 1 MIIEAKGLKKIYN-------HVPVVDDVDLLVPEGEVFGFLGPNGSGKTTVMRMLLGLVK 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
G I G+ S +K++L K V A+ + P A + L +D +
Sbjct: 54 TDGGDIKILGK---SLEKNRLS--ILKEVGALIETP-AYYGHLNAIDNL------KIAAT 101
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
+ +E + + L+ VGL + K S G QR+ IA ALL +P LL+ DE +
Sbjct: 102 LRQIEDHSQIEKTLDRVGLTSSK--HKKVKSFSLGMKQRLGIAMALLHQPKLLLLDEPTN 159
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWG 234
LD ++ L+ + G +V +H L ++ ++ ++Y GS++ G
Sbjct: 160 GLDPEGIQEMRELIRDLPKKEGVTVFVSSHLLGEIDQVASQVGVIYHGSLLYQG 213
>pir||T44443 gliding motility protein [imported] - Flavobacterium johnsoniae
>gi|2281663|gb|AAC19751.1| (AF007381) gliding motility
protein [Flavobacterium johnsoniae]
Length = 298
Score = 85.8 bits (209), Expect = 6e-16
Identities = 68/235 (28%), Positives = 114/235 (47%), Gaps = 32/235 (13%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M +EV +++K + + +A++ ++F I++GEIV +G +G+GK+T+ K++ +
Sbjct: 1 MSIEVNSISKSYG-------EQKALNEISFKIEKGEIVGFLGPNGAGKSTLMKILTTYLL 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQD--PFASFNPLYKVDRVFDLVFRTFL 118
SG L G D+ + N +AV Q NPLY DL R +L
Sbjct: 54 ADSGSALVNGHDVMT------------NAKAVQQSIGYLPEHNPLY-----LDLYVREYL 96
Query: 119 KNVSDVEK--DELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
+DV K + ++ GL P K QLS G QR+ +A ALL P +LI D
Sbjct: 97 AFNADVYKVPKSRIEEVIQLTGLTPES--HKKISQLSKGYRQRVGLANALLHNPDVLILD 154
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIV 231
E + LD + +++ N++ ++ TH + I D++II+ +G IV
Sbjct: 155 EPTTGLDPNQLMEIRNVIKNI--GKDKTIFLSTHIMQEVEAICDRVIIIDKGQIV 207
>pir||D71550 probable ABC transporter ATPase - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328554|gb|AAC67743.1| (AE001289)
ABC Transporter ATPase [Chlamydia trachomatis]
Length = 225
Score = 81.9 bits (199), Expect = 9e-15
Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 20/219 (9%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+L+E ++++K+ + + + +V+F + GE+V++ G SGSGK+++ L+ L +
Sbjct: 3 ILVEAKHISKVIQQQDVC---IPILKDVSFQLHAGEVVAITGASGSGKSSLLHLLGTLDQ 59
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P+SG+ILF G+ + +++L + + +FQ+ + L + D V + V
Sbjct: 60 PSSGQILFFGKQV---RREELPIFRNCRIGFIFQNFY-----LLEDDSVINNVLMPAQIA 111
Query: 121 VSDV-EKDELVRRA---LESVGL-NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIA 175
D +K + RA LESVGL + R+ G LSGG+ QR+ IARAL+ +P +++A
Sbjct: 112 RKDTGQKSKARERALALLESVGLVDRRDEKGSL---LSGGEKQRVAIARALMNDPEIVLA 168
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLAL 214
DE LD T + LL + H V+ +THD L
Sbjct: 169 DEPSGNLDHRTADTIHELLLALAEKH-RGVLIVTHDREL 206
>gb|AAF73553.1| (AE002310) ABC transporter, ATP-binding protein [Chlamydia
muridarum]
Length = 244
Score = 80.8 bits (196), Expect = 2e-14
Identities = 69/218 (31%), Positives = 112/218 (50%), Gaps = 18/218 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+L+E ++++K + + + V+F + EGE+V++ G SGSGK+++ L+ L +
Sbjct: 3 ILIEARHVSKTIKQRDL---HIDILKEVSFQLHEGEVVAITGASGSGKSSLLHLLGTLDQ 59
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P+SG+ILF G+ + D N + + +FQ+ + L + D V + V
Sbjct: 60 PSSGQILFFGKTVRLEDLPIFRN---RRIGFIFQNFY-----LLEDDSVINNVLMPARIA 111
Query: 121 VSDV-EKDELVRRA---LESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIAD 176
D +K E RA LESVGL R+ + LSGG+ QR+ IARAL+ +P +++AD
Sbjct: 112 RKDTGKKSEARERAIYLLESVGLVDRQ--EEKGCLLSGGEKQRVAIARALMNDPEIVLAD 169
Query: 177 EAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLAL 214
E LD T + L H V+ +THD L
Sbjct: 170 EPSGNLDRRTADTIHEQLLSLAGKH-RGVLIVTHDREL 206
>gb|AAK41504.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 286
Score = 80.4 bits (195), Expect = 3e-14
Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 27/244 (11%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M +EV++L K F G +V + V+F ++ G I +G +G+GKTT K++ L++
Sbjct: 1 MTIEVEDLRKKFA-----GKEV--LKGVSFKLRSGSITGFIGPNGAGKTTTIKILSGLLR 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
G + GED W D K+M + + +F N ++ + +L +
Sbjct: 54 KDGGFVKVFGEDPW--DNPKVM----ERISVIFT------NLIHPQENTVG----EYLMD 97
Query: 121 VSDV--EKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEA 178
+ +V +K E++ +E L P L K +QLS G QR+ + AL+ + L+IADE
Sbjct: 98 LGNVYGKKREIINYLIEEFKLTPH--LNKRLYQLSSGLAQRVQLVAALIKDVELIIADEP 155
Query: 179 VSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEK 238
+ LD S RI+ ++ E +G + +H L+ + +I + G I G K
Sbjct: 156 TANLDPSFRIEFYEVVKELNRKNGVTFFISSHILSELEKVITDVIFINDGRITYSGRMNK 215
Query: 239 VFDN 242
+
Sbjct: 216 ALSD 219
>pir||D70984 probable drrA protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1781083|emb|CAB06095.1| (Z83857) drrA [Mycobacterium
tuberculosis]
Length = 331
Score = 80.4 bits (195), Expect = 3e-14
Identities = 63/260 (24%), Positives = 118/260 (45%), Gaps = 19/260 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M + V + K + G ++ A+D+V+F ++ GE++ L+G +G+GKTT+ ++ L +
Sbjct: 6 MAVVVNGVRKTYGKG-----KIVALDDVSFKVRRGEVIGLLGPNGAGKTTMVDILSTLTR 60
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P +G + G D+ S + Q D + L R++ L K
Sbjct: 61 PDAGSAIIAGYDVVSEPAGVRRSIMVTGQQVAVDDALSGEQNLVLFGRLWGLSKSAARKR 120
Query: 121 VSD-VEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAV 179
++ +E+ LV VG SGG +RI IA L+V+P + DE
Sbjct: 121 AAELLEQFSLVHAGKRRVG------------TYSGGMRRRIDIACGLVVQPQVAFLDEPT 168
Query: 180 SMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
+ LD +R + +L+ F+ G + + T L +SD+II++ G I+ G ++
Sbjct: 169 TGLDPRSRQAIWDLVASFK-KLGIATLLTTQYLEEADALSDRIILIDHGIIIAEGTANEL 227
Query: 240 FDNPLHPYTKMLLESVPDLN 259
+ +++ + DL+
Sbjct: 228 KHRAGDTFCEIVPRDLKDLD 247
>pir||S49597 ATP-binding protein - Lactococcus lactis >gi|575301|emb|CAA82547.1|
(Z29363) cytoplasmic protein [Lactococcus lactis]
Length = 225
Score = 80.0 bits (194), Expect = 4e-14
Identities = 65/232 (28%), Positives = 116/232 (49%), Gaps = 33/232 (14%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M +++QNL+K + + + + +++F IK G + L+G +G+GK+T+ K++ LI
Sbjct: 1 MQVKIQNLSKTYK-------EKQVLQDISFDIKSGTVCGLLGVNGAGKSTLMKILFGLIS 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
+GKI F G+ +K N + A+ + P N + +L + L
Sbjct: 54 ADTGKIFFDGQ-------EKTNN----QLGALIEAPAIYMN----LSAFDNLKTKALLFG 98
Query: 121 VSDVEKDELVRRALESVGL--NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEA 178
+S D+ + LE +GL ++ GKF S G QR+ I A+L EP LI DE
Sbjct: 99 IS----DKRIHETLEVIGLAETGKKRAGKF----SLGMKQRLGIGMAILTEPQFLILDEP 150
Query: 179 VSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSI 230
+ LD ++LNL+ + + G +++ +H L ++ +III+ +G I
Sbjct: 151 TNGLDPDGIAELLNLILKLKAK-GVTILISSHQLHEISKVASQIIILNKGKI 201
>gb|AAC43327.1| (U17255) NisF [Lactococcus lactis] >gi|1095449|prf||2109193A nisF
gene [Lactococcus lactis]
Length = 225
Score = 80.0 bits (194), Expect = 4e-14
Identities = 65/232 (28%), Positives = 116/232 (49%), Gaps = 33/232 (14%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M +++QNL+K + + + + +++F IK G + L+G +G+GK+T+ K++ LI
Sbjct: 1 MQVKIQNLSKTYK-------EKQVLQDISFDIKSGTVCGLLGVNGAGKSTLMKILFGLIS 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
+GKI F G+ +K N + A+ + P N + +L + L
Sbjct: 54 ADTGKIFFDGQ-------EKTNN----QLGALIEAPAIYMN----LSAFDNLKTKALLFG 98
Query: 121 VSDVEKDELVRRALESVGL--NPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEA 178
+S D+ + LE +GL ++ GKF S G QR+ I A+L EP LI DE
Sbjct: 99 IS----DKRIHETLEVIGLAETGKKRAGKF----SLGMKQRLGIGMAILTEPQFLILDEP 150
Query: 179 VSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSI 230
+ LD ++LNL+ + + G +++ +H L ++ +III+ +G I
Sbjct: 151 TNGLDPDGIAELLNLILKLKAK-GVTILISSHQLHEISKVASQIIILNKGKI 201
>gb|AAF43495.1|AF130119_2 (AF130119) oligopeptide permease F [Mycoplasma bovis]
Length = 514
Score = 79.2 bits (192), Expect = 6e-14
Identities = 48/106 (45%), Positives = 63/106 (59%), Gaps = 12/106 (11%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
++LE+Q+L K F L G +AVD V+F + EGEIV L+GESGSGKTT+G+ ILRL
Sbjct: 9 VILEIQDLKKYF---LNNGKVNKAVDGVSFKLHEGEIVGLIGESGSGKTTVGRSILRLYD 65
Query: 61 PTSGKI-----LFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFN 101
+G + + GE I K + K VQ +FQDP AS N
Sbjct: 66 DFNGFVTLDDQIISGESI----SKKREKFLRKRVQMIFQDPHASLN 107
>dbj|BAB11402.1| (AP002543) ABC transporter-like protein [Arabidopsis thaliana]
Length = 567
Score = 78.0 bits (189), Expect = 1e-13
Identities = 64/249 (25%), Positives = 122/249 (48%), Gaps = 19/249 (7%)
Query: 1 MLLEVQNLT-KIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
+ L+ +++T K+ L + + ++ S+ GE+++L+G SGSGKTT+ L+ I
Sbjct: 31 IFLKFRDVTYKVVIKKLTSSVEKEILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRI 90
Query: 60 KPTS--GKILFKGEDIWSFDKDKLMNYYYKN-VQAVFQDPFASFNPLYKVDRVFDLVFRT 116
+S G + + DK + Y K+ + V QD P V R
Sbjct: 91 SQSSTGGSVTYN---------DKPYSKYLKSKIGFVTQDDVLF--PHLTVKETLTYAARL 139
Query: 117 FL-KNVSDVEKDELVRRALESVGLNPRE---ILGKFPHQLSGGQLQRILIARALLVEPSL 172
L K ++ +K + ++ +GL + I G F +SGG+ +R+ I +++ PSL
Sbjct: 140 RLPKTLTREQKKQRALDVIQELGLERCQDTMIGGAFVRGVSGGERKRVSIGNEIIINPSL 199
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
L+ DE S LD++T + + +L + + T + I + ++ DK+I++ RGS++
Sbjct: 200 LLLDEPTSGLDSTTALRTILMLHDIAEAGKTVITTIHQPSSRLFHRFDKLILLGRGSLLY 259
Query: 233 WGDTEKVFD 241
+G + + D
Sbjct: 260 FGKSSEALD 268
>gb|AAK41516.1| Oligo/dipeptide transport, ATP binding protein . carboxy-end
fragment. (dppF-2) [Sulfolobus solfataricus]
Length = 103
Score = 76.1 bits (184), Expect = 5e-13
Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 221 KIIIMYRGSIVEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWEL- 279
+I +MY G +VE G E+V PLHPYT+ LL++VP + K + E EL
Sbjct: 7 RIGVMYLGKVVEIGTPEEVISEPLHPYTQALLQAVPVPDPDIGIKEPNIKGEIQSPLELP 66
Query: 280 KGCKFAPRCSLAKDKCWKIRPEPVEVEKNHWVACHLY 316
KGC F RC AKD C + PE ++ +H+VACHLY
Sbjct: 67 KGCVFYSRCPFAKDICKEKPPEIKRIKGDHYVACHLY 103
>pir||B72552 probable ATP-dependent transporter APE1702 - Aeropyrum pernix
(strain K1) >gi|5105390|dbj|BAA80703.1| (AP000062) 253aa
long hypothetical ATP-dependent transporter [Aeropyrum
pernix]
Length = 253
Score = 76.1 bits (184), Expect = 5e-13
Identities = 74/253 (29%), Positives = 128/253 (50%), Gaps = 37/253 (14%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLIL--RL 58
M LEV+ LT ++ ++ V F +K GE+ +++G +GSGK+++G +I+ +
Sbjct: 1 MGLEVKGLTAKIGEKVV-------LNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREI 53
Query: 59 IKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVF---- 114
+ G IL GE I ++ K + QDP P R+ L+
Sbjct: 54 YEVVEGDILLDGESIKELPPEERA---LKGIFMAQQDP-----PQIPGVRLSSLIIAFVN 105
Query: 115 -RTFLKNVSDVEKDELVRRALE---SVGLNPREILGKFPHQ-LSGGQLQRILIARALLVE 169
R +++S ++V+R E +GL+ REIL + + SGG+ +R + +A++ +
Sbjct: 106 KRLGAQDLSKPADPKIVKRMYEYATKLGLD-REILNREVNVGFSGGEKKRSELLQAMIFD 164
Query: 170 PSLLIADEAVSMLDASTRIDVLNLLGEF----RDNHGTSVIFITHDLALGYYIS-DKIII 224
P ++I DE S LD ID L ++ EF RD+ G V+ ITH L ++ D++ +
Sbjct: 165 PKIVILDEPDSGLD----IDGLKIVAEFIKQLRDS-GRGVMLITHYARLLNFVEPDRVTV 219
Query: 225 MYRGSIVEWGDTE 237
+YRGS++ G E
Sbjct: 220 LYRGSVLARGGAE 232
>pir||G71131 probable ATP-binding protein - Pyrococcus horikoshii
>gi|3257230|dbj|BAA29913.1| (AP000003) 312aa long
hypothetical ATP-binding protein [Pyrococcus horikoshii]
Length = 312
Score = 75.7 bits (183), Expect = 7e-13
Identities = 59/234 (25%), Positives = 118/234 (50%), Gaps = 23/234 (9%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+++E NLTK + G + AV VTFS+ EGE+ +G +G+GKTT +++ ++K
Sbjct: 6 VVIEAINLTKYY-----GNFP--AVRGVTFSVNEGEVFGFLGPNGAGKTTTIRMLTGVLK 58
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PTSG++ G D+ + + +KL + +P+ + + + +L
Sbjct: 59 PTSGQVRVLGYDM-TREPEKLKARQRMGIVPEMANPYIDLTAMQNLKLMGELY------- 110
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSG---GQLQRILIARALLVEPSLLIADE 177
+ K E+ +R++E + L E+ K ++ G G QR+++A A++ +P L DE
Sbjct: 111 --GLPKWEIEKRSIELLKL--FELYEKRNIKVRGFSKGMRQRLVLAMAMIADPELYFLDE 166
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIV 231
S LD + + +++ + G ++ TH++ + ++I I+ +G +V
Sbjct: 167 PTSGLDVISARIIKDIIRD-EKKAGKTIFLTTHNMNDANELCERIGIIRKGKLV 219
>pir||F81431 ABC transporter ATP-binding protein Cj0142c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6967636|emb|CAB72626.1| (AL139074) ABC transporter
ATP-binding protein [Campylobacter jejuni]
Length = 284
Score = 75.7 bits (183), Expect = 7e-13
Identities = 68/240 (28%), Positives = 111/240 (45%), Gaps = 27/240 (11%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
+ E+ NL + + +I + N+ S + +S++G +G+GK+T+ KLIL L+K
Sbjct: 2 LFFEISNLNYAYDNEII-------LKNINLSYDNKDFLSIIGPNGAGKSTLVKLILGLLK 54
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRV--FDLVFRTFL 118
+ +I FK K + V Q A+ N +V + LV +
Sbjct: 55 -SKNEIHFKA-------------LQRKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIF 100
Query: 119 KNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEA 178
+K++ ++ AL+SVG+ + K LSGGQ QR+ IARAL E +LI DE
Sbjct: 101 GFYGKKDKEKAMQ-ALKSVGME--KFWNKTIDSLSGGQRQRVFIARALASECKMLILDEP 157
Query: 179 VSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEK 238
+ +D + I + LL G ++ I HD+ L SDKI + + + EK
Sbjct: 158 TASVDNKSAIQIFELLISLHQK-GMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEK 216
>gb|AAD32038.1|AF093787_6 (AF093787) ABC transporter homolog CylA [Streptococcus agalactiae]
Length = 309
Score = 74.5 bits (180), Expect = 2e-12
Identities = 67/244 (27%), Positives = 118/244 (47%), Gaps = 25/244 (10%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M ++++N+ K + S A+ ++ +EG+ L+G +G+GKTT+ +++ K
Sbjct: 1 MEIKLKNIGKKYGS-------FEALRDINLIFEEGKFYGLLGPNGAGKTTLFNPLIQNFK 53
Query: 61 PTSGKILFKGEDIWSFDKDKL-MNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLK 119
TSG I W D L + +Y+++ VFQ N + + L+ R L
Sbjct: 54 QTSGDIK------WEVDGKPLSIKDFYRHIGIVFQSNRLDDNLTVEEN----LISRGALY 103
Query: 120 NVSDVEKDELVRRALESVG--LNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
+S + VR L+ + L+ I + LSGGQ +++ IARALL +PSLL+ DE
Sbjct: 104 GLSKSQ----VRNRLKDLQTYLDITAIKKQKYGSLSGGQKRKVDIARALLPQPSLLLLDE 159
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTE 237
+ LD +R D+ + + + +V+ ITH L D + ++ G+I GD +
Sbjct: 160 PTTGLDPQSRRDLWDAIAQLNQQSQMTVVLITHYLE-EMSACDVLNVLIEGNIYYSGDIK 218
Query: 238 KVFD 241
+
Sbjct: 219 SFIE 222
>gb|AAC62423.1| (AF084104) NatA [Bacillus firmus]
Length = 299
Score = 71.4 bits (172), Expect = 1e-11
Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 22/239 (9%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M L++ N+TK F + AVD ++ I GE+ ++G +G+GKTT +++L L++
Sbjct: 1 MTLKINNITKRFGQSV-------AVDQLSLEIPSGEMFGMLGANGAGKTTTFRMMLGLLE 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
PT G++ +KGE I +Y NV + + L D+ L++ LK
Sbjct: 54 PTEGEMTWKGEKI---------DYSRTNVIGYLPEERGLYPKLKVRDQ---LIYLGRLKG 101
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
+ + +R LE + E K +LS G Q+I +++ P LLI DE S
Sbjct: 102 MHKKDIIPEMRMWLERFKVTDYET--KRIEELSKGNQQKIQFIASVIHRPELLILDEPFS 159
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
LD ++L GT+++F +H + + + I+ G+ V G+ ++
Sbjct: 160 GLD-PVNAELLKEAVIDLKKKGTTIVFSSHRMDHVEELCQHLCILRHGTPVVKGELREI 217
>sp|O05732|Y888_HELPY PROBABLE IRON CHELATIN TRANSPORT ATP-BINDING PROTEIN HP0888
>gi|7445778|pir||H64630 iron(III) dicitrate ABC
transporter, ATP-binding protein - Helicobacter pylori
(strains 26695 and 60190) >gi|2072456|gb|AAC45245.1|
(U94318) FepC [Helicobacter pylori]
>gi|2314024|gb|AAD07936.1| (AE000598) iron(III)
dicitrate ABC transporter, ATP-binding protein (fecE)
[Helicobacter pylori 26695]
Length = 255
Score = 70.2 bits (169), Expect = 3e-11
Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 18/214 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M+LEV+NL+ ++ LI +D ++FS+ + I S++ +GSGKTT+ K +L L+K
Sbjct: 1 MVLEVKNLSFKYSQKLI-------LDKLSFSVPKNSITSILAPNGSGKTTLLKCLLGLLK 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P + +I + +KD L Y+ + + P + F L+ + N
Sbjct: 54 P------LEETEIKACNKDILPLKPYEKAKLIAYIPQVEYYAFNFSVLDFVLMGKATHLN 107
Query: 121 VSDVEKDELVRRA---LESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
+ + K + ++ A LE + L + G + LSGGQ Q +L+AR+LL LL+ DE
Sbjct: 108 LFAMPKAKHIKEATSVLERLDLESLKDQGI--NDLSGGQRQMVLLARSLLQRTPLLLLDE 165
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHD 211
S LD + + + + SV+ HD
Sbjct: 166 PTSALDLKNQALFFDAIKDEMKKRELSVLVNIHD 199
>sp|Q9ZKW3|Y888_HELPJ PROBABLE IRON CHELATIN TRANSPORT ATP-BINDING PROTEIN HP0888
>gi|7445834|pir||G71884 iron (III) dicitrate transport
system ATP-binding protein - Helicobacter pylori (strain
J99) >gi|4155391|gb|AAD06401.1| (AE001511) IRON(III)
DICITRATE TRANSPORT SYSTEM ATP-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 255
Score = 70.2 bits (169), Expect = 3e-11
Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 18/214 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M+LEV+NL+ ++ LI +D ++FS+ + I S++ +GSGKTT+ K +L L+K
Sbjct: 1 MVLEVKNLSFKYSQKLI-------LDKLSFSVPKNSITSILAPNGSGKTTLLKCLLGLLK 53
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
P + +I + +KD L Y+ + + P + F L+ + N
Sbjct: 54 P------LEETEIKACNKDILPLKPYEKAKLIAYIPQVEYYAFNFSVLDFVLMGKATHLN 107
Query: 121 VSDVEKDELVRRA---LESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
+ + K + ++ A LE + L + G + LSGGQ Q +L+AR+LL LL+ DE
Sbjct: 108 LFAMPKAKHIKEATSVLERLDLESLKDQGI--NDLSGGQRQMVLLARSLLQRTPLLLLDE 165
Query: 178 AVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHD 211
S LD + + + + SV+ HD
Sbjct: 166 PTSALDLKNQALFFDAIKDEMKKRELSVLVNIHD 199
>pir||C72336 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4981293|gb|AAD35847.1|AE001746_8 (AE001746)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 265
Score = 70.2 bits (169), Expect = 3e-11
Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 36/239 (15%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
M+L V++L K + + AVD ++F +++GEI +++G +G+GKTT K I L K
Sbjct: 2 MILRVKDLKKFYG-------EKAAVDGISFEVEKGEIFAILGPNGAGKTTTLKCITGLRK 54
Query: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
SG+I G + ++ KL P +V + DL F+ KN
Sbjct: 55 KDSGEIELNGTFTYLPEEKKLY-------------------PYLRVKEIIDL-FKKIGKN 94
Query: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
++ EL+ R + LN + LS G + ++ L L I DE
Sbjct: 95 FNEKNCLELLERF--RIDLNEKVT------NLSHGMRTILYLSLVLSENVDLYILDEPTW 146
Query: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKV 239
LD R ++L+ + G SV++ +H LA I+D++ IM G I+ G+ + +
Sbjct: 147 GLDPIVRNEILDRIRSL-TFEGKSVLYTSHVLAEVEKIADRVAIMKEGKIILTGNLDDI 204
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.421
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124622905
Number of Sequences: 2977
Number of extensions: 5399014
Number of successful extensions: 22858
Number of sequences better than 1.0e-10: 1723
Number of HSP's better than 0.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 1308
Number of HSP's that attempted gapping in prelim test: 19543
Number of HSP's gapped (non-prelim): 2097
length of query: 319
length of database: 189,106,746
effective HSP length: 53
effective length of query: 266
effective length of database: 157,386,935
effective search space: 41864924710
effective search space used: 41864924710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)