BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1351 (PAB1351) DE:Hypothetical protein
(355 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75068 hypothetical protein PAB1351 - Pyrococcus abyssi (st... 711 0.0
pir||E71164 hypothetical protein PH0514 - Pyrococcus horikoshii ... 433 e-120
pir||G75106 hypothetical protein PAB0444 - Pyrococcus abyssi (st... 83 6e-15
pir||H75180 hypothetical protein PAB0416 - Pyrococcus abyssi (st... 78 2e-13
pir||F71027 hypothetical protein PH1514 - Pyrococcus horikoshii ... 75 1e-12
pir||C71033 hypothetical protein PH1555 - Pyrococcus horikoshii ... 74 2e-12
pir||D71182 hypothetical protein PH1737 - Pyrococcus horikoshii ... 72 1e-11
pir||B75143 hypothetical protein PAB0205 - Pyrococcus abyssi (st... 71 3e-11
>pir||A75068 hypothetical protein PAB1351 - Pyrococcus abyssi (strain Orsay)
>gi|5458951|emb|CAB50438.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 355
Score = 711 bits (1816), Expect = 0.0
Identities = 355/355 (100%), Positives = 355/355 (100%)
Query: 1 MDMLEIAMVITTLIKLATSGYLLRIYFRTRRRSSLIFSVALLVYSLVTLSDLIGNYFLNQ 60
MDMLEIAMVITTLIKLATSGYLLRIYFRTRRRSSLIFSVALLVYSLVTLSDLIGNYFLNQ
Sbjct: 1 MDMLEIAMVITTLIKLATSGYLLRIYFRTRRRSSLIFSVALLVYSLVTLSDLIGNYFLNQ 60
Query: 61 ISLALTSVFMFGAIYYFGIEEERLMGSKVVYVSISLTPIVVTLYTWLLQKTMVEFGIWGI 120
ISLALTSVFMFGAIYYFGIEEERLMGSKVVYVSISLTPIVVTLYTWLLQKTMVEFGIWGI
Sbjct: 61 ISLALTSVFMFGAIYYFGIEEERLMGSKVVYVSISLTPIVVTLYTWLLQKTMVEFGIWGI 120
Query: 121 VAINWGVSGFFILLSGLLALELRRTFKSDVFWLALPLMAIGAHEMDYPFLRPIQWFAPIG 180
VAINWGVSGFFILLSGLLALELRRTFKSDVFWLALPLMAIGAHEMDYPFLRPIQWFAPIG
Sbjct: 121 VAINWGVSGFFILLSGLLALELRRTFKSDVFWLALPLMAIGAHEMDYPFLRPIQWFAPIG 180
Query: 181 FLLAATFVVLLAYGIVKVFGSETYFHGRSVKRPTQINLSPGSIVMGSQEFNRIVQNLKDF 240
FLLAATFVVLLAYGIVKVFGSETYFHGRSVKRPTQINLSPGSIVMGSQEFNRIVQNLKDF
Sbjct: 181 FLLAATFVVLLAYGIVKVFGSETYFHGRSVKRPTQINLSPGSIVMGSQEFNRIVQNLKDF 240
Query: 241 PVLAFVRNIKPLDGWYSYFVTRAREDGNVLSPTNLPRMLELSKKYFQSVENGIVVIDCLE 300
PVLAFVRNIKPLDGWYSYFVTRAREDGNVLSPTNLPRMLELSKKYFQSVENGIVVIDCLE
Sbjct: 241 PVLAFVRNIKPLDGWYSYFVTRAREDGNVLSPTNLPRMLELSKKYFQSVENGIVVIDCLE 300
Query: 301 YFSIYNGFENTLKYLAMLRDYAVLHNGTLIIVTDRMLWNDKEWSLLMNMFSQPQS 355
YFSIYNGFENTLKYLAMLRDYAVLHNGTLIIVTDRMLWNDKEWSLLMNMFSQPQS
Sbjct: 301 YFSIYNGFENTLKYLAMLRDYAVLHNGTLIIVTDRMLWNDKEWSLLMNMFSQPQS 355
>pir||E71164 hypothetical protein PH0514 - Pyrococcus horikoshii
>gi|3256919|dbj|BAA29602.1| (AP000002) 352aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 352
Score = 433 bits (1102), Expect = e-120
Identities = 206/348 (59%), Positives = 269/348 (77%), Gaps = 1/348 (0%)
Query: 4 LEIAMVITTLIKLATSGYLLRIYFRTRRRSSLIFSVALLVYSLVTLSDLIGNYFLNQISL 63
L AM+IT IKL S +L R+Y+RTRR+SS++ S+AL +Y+L TLSDL+ NYFLNQ+ L
Sbjct: 6 LGFAMIITIGIKLTGSAFLGRVYYRTRRKSSVVLSLALALYALNTLSDLLKNYFLNQLFL 65
Query: 64 ALTSVFMFGAIYYFGIEEERLMGSKVVYVSISLTPIVVTLYTWLLQKTMVEFGIWGIVAI 123
AL+S F A+YY EEE+ + SK +Y+++SLTP+++T+Y WLL++ + W IV +
Sbjct: 66 ALSSACFFMALYYLEAEEEKAVPSKTLYLTLSLTPLLITIYVWLLERVIPTSETWSIVGV 125
Query: 124 NWGVSGFFILLSGLLALELRRTFKSDVFWLALPLMAIGAHEMDYPFLRPIQWFAPIGFLL 183
+WG+SGFFIL SG+ L+LR F + + WL+ L+AIGAHEMDYPFLRPI+WFAPIGFLL
Sbjct: 126 SWGISGFFILASGVSILKLRDIFGNRILWLSASLIAIGAHEMDYPFLRPIKWFAPIGFLL 185
Query: 184 AATFVVLLAYGIVKVFGSETYFHGRSVKRPTQINLSPGSIVMGSQEFNRIVQNLKDFPVL 243
AATFVVLL YGI VFGSE YF +S + I L PGS++M +EF I +L++FPVL
Sbjct: 186 AATFVVLLVYGIFLVFGSEVYFKRKSPGK-ISIKLKPGSMIMNMEEFKAISPSLQNFPVL 244
Query: 244 AFVRNIKPLDGWYSYFVTRAREDGNVLSPTNLPRMLELSKKYFQSVENGIVVIDCLEYFS 303
AFVR++K + WYSYFVTRAR DG + P NLPR++ELS+KYFQSVE G+VVIDCLEY
Sbjct: 245 AFVRHLKTPETWYSYFVTRARSDGGAVDPMNLPRIIELSRKYFQSVERGVVVIDCLEYLV 304
Query: 304 IYNGFENTLKYLAMLRDYAVLHNGTLIIVTDRMLWNDKEWSLLMNMFS 351
+YNGFENT K+LA+LRDYA ++NGTLI++T + W +KEWSLL+ MFS
Sbjct: 305 LYNGFENTAKHLAILRDYATVNNGTLILITSKEAWGEKEWSLLVRMFS 352
>pir||G75106 hypothetical protein PAB0444 - Pyrococcus abyssi (strain Orsay)
>gi|5458079|emb|CAB49568.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 319
Score = 82.7 bits (201), Expect = 6e-15
Identities = 45/110 (40%), Positives = 71/110 (63%), Gaps = 3/110 (2%)
Query: 238 KDFPVLAFVRNIKPLDGWYSYFVTRARE-DGNVLSPTNLPRMLELSKKYFQSVENGIVVI 296
+D +A V + KP G ++VT+ + D N + PTNLP++L L+ Y + + G+VVI
Sbjct: 203 EDILKVALVFSRKPGKGERWFWVTKLKSSDVNTIEPTNLPKILSLAVDYLK--KKGVVVI 260
Query: 297 DCLEYFSIYNGFENTLKYLAMLRDYAVLHNGTLIIVTDRMLWNDKEWSLL 346
DCL+Y + NGFE+ +K++A LRDYAV+H ++II+ +DKE +L
Sbjct: 261 DCLDYLILENGFESVIKFMAHLRDYAVMHGSSVIILGPLEGLSDKEKVML 310
>pir||H75180 hypothetical protein PAB0416 - Pyrococcus abyssi (strain Orsay)
>gi|5458037|emb|CAB49527.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 366
Score = 77.6 bits (188), Expect = 2e-13
Identities = 84/354 (23%), Positives = 160/354 (44%), Gaps = 29/354 (8%)
Query: 13 LIKLATSG--YLLRIYFRTRRRSSLIFSVALLVYS--LVTLSDLIGNYFL------NQIS 62
LI + T G ++L Y R+R L+ + L +S L L+ I + L + IS
Sbjct: 4 LINVVTRGLMWILSFYRWIRKREPLMIIITLAFWSDFLGVLTQPIVSKMLGVSPDVSNIS 63
Query: 63 LALTSVFMFGAIYYFGIEEERLMGSKVVYVSISLTPIVVTLYTWLLQKTMVEFGIWGIVA 122
+++ + I+ F L K + ++ + +++ T+ + + I A
Sbjct: 64 PLMSTYALLEGIFLFLATMYTLGTIKKAWAQVTSFVVFQVGSLYIVLSTIFKADLPVISA 123
Query: 123 INWGVSGFFILLSGLLALELRRTFKSDVFWLALPLMAIGAHEMDYPFLRPIQWFAPIGFL 182
+ G ++L G+ L+ + + L+ +G+ + YP L AP +
Sbjct: 124 FSVLFMGISMILLGISLLKREIESRGIAALFPIGLILLGSINLTYPLL-VYSKLAPYLYG 182
Query: 183 LAATFVVLLAYGIVKVFGSETYFHGRSVKRPT--QINLSPGSIVMGSQ-EFNRIVQNLK- 238
A F VL+ G+ K T F VK P +I L PG+ ++ EF ++ ++
Sbjct: 183 AGAVFRVLMIIGLFKY----TIFE---VKPPKIQEIILKPGAFYTDNESEFESVIMKMQL 235
Query: 239 DFPVLAFVRNIKPLDGWYSYF----VTRAREDGNV--LSPTNLPRMLELSKKYFQSVENG 292
+ R + + + F VT R D NV + P+++ +++L K++ + +
Sbjct: 236 SGNGVLITRKLPKMSPTFPVFWITKVTSGRIDENVTAIQPSDIGILIDLVKRHLEK-GHS 294
Query: 293 IVVIDCLEYFSIYNGFENTLKYLAMLRDYAVLHNGTLIIVTDRMLWNDKEWSLL 346
+V +D EY + NGFE +K+L L+D+ + N TLI+ T+ + DK+WS++
Sbjct: 295 VVAMDAFEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQAYQDKQWSVI 348
>pir||F71027 hypothetical protein PH1514 - Pyrococcus horikoshii
>gi|3257939|dbj|BAA30622.1| (AP000006) 310aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 310
Score = 74.9 bits (181), Expect = 1e-12
Identities = 37/89 (41%), Positives = 63/89 (70%), Gaps = 3/89 (3%)
Query: 258 YFVTRAREDGNVLSPTNLPRMLELSKKYFQSVENGIVVIDCLEYFSIYNGFENTLKYLAM 317
+++T+ E N + PT+L ++L+L+ K+ + + GIV+IDCLEY + NGFE LK+LA
Sbjct: 216 FWITKL-EGKNNIGPTDLHKILDLAVKHIK--KGGIVIIDCLEYLILENGFERVLKFLAQ 272
Query: 318 LRDYAVLHNGTLIIVTDRMLWNDKEWSLL 346
LRDYA+++N T+II+ +++E ++L
Sbjct: 273 LRDYAIMYNSTVIILGSLDKLSERERAML 301
>pir||C71033 hypothetical protein PH1555 - Pyrococcus horikoshii
>gi|3257984|dbj|BAA30667.1| (AP000006) 366aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 366
Score = 74.1 bits (179), Expect = 2e-12
Identities = 58/235 (24%), Positives = 107/235 (44%), Gaps = 23/235 (9%)
Query: 129 GFFILLSGLLALELRRTFKSDVFWLALPLMAIGAHEMDYPF-----LRPIQWFAPIGFLL 183
GF ++L+G + L + K+ L ++ +G ++ YP + P +FA G
Sbjct: 133 GFSLILAGYVLLRHEISIKNVSALFPLGMILLGLIDITYPVTVNMSIAPYLYFAG-GVFR 191
Query: 184 AATFVVLLAYGIVKVFGSETYFHGRSVKRPTQINLSPGSIVMGSQE-FNRIVQNLKDFPV 242
V + Y + +V G IN+ PG + +E F+ I++ ++
Sbjct: 192 GMILVGIFKYALFEVSSPRVIGEG--------INILPGGYYLEDREVFHDILKRMESLGN 243
Query: 243 LAFVRNIKPLDG------WYSYFVTRAREDGNV-LSPTNLPRMLELSKKYFQSVENGIVV 295
+ P D W + V+ +D + +SPT+L +L+L +++ + +VV
Sbjct: 244 GVLITRHLPKDSFSFPIFWLTKVVSGPIKDNIIAISPTDLGILLDLVRRHLERGHT-VVV 302
Query: 296 IDCLEYFSIYNGFENTLKYLAMLRDYAVLHNGTLIIVTDRMLWNDKEWSLLMNMF 350
ID EY I NGFE +K+L L+D A+ + LI+VT ++ +W ++ F
Sbjct: 303 IDGFEYIVIENGFETAMKFLLSLKDTAIKYRARLILVTSSQAYSQNQWKIIAREF 357
>pir||D71182 hypothetical protein PH1737 - Pyrococcus horikoshii
>gi|3258168|dbj|BAA30851.1| (AP000007) 237aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 237
Score = 71.8 bits (173), Expect = 1e-11
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 18/120 (15%)
Query: 241 PVLAFVR----------NIKPLDGWYSYFVTRAREDGNVLSPTNLPRMLELSKKYFQSVE 290
P+L F R NIK + ++T+A EDG + PT L + + + K+ + +
Sbjct: 123 PILVFTRYPTFYQDLGENIKVI------WITQASEDG--IPPTKLHVIQDYAIKFAKENK 174
Query: 291 NGIVVIDCLEYFSIYNGFENTLKYLAMLRDYAVLHNGTLIIVTDRMLWNDKEWSLLMNMF 350
+V+IDC+EY +YN F + K+LA L+DY ++ N L++ D ++K ++LL+N F
Sbjct: 175 YAVVIIDCVEYLLLYNEFASVFKFLASLKDYLIMMNSALVLAVDEKALDEKYYTLLLNEF 234
>pir||B75143 hypothetical protein PAB0205 - Pyrococcus abyssi (strain Orsay)
>gi|5457735|emb|CAB49225.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 242
Score = 70.6 bits (170), Expect = 3e-11
Identities = 32/92 (34%), Positives = 58/92 (62%), Gaps = 2/92 (2%)
Query: 259 FVTRAREDGNVLSPTNLPRMLELSKKYFQSVENGIVVIDCLEYFSIYNGFENTLKYLAML 318
++T+A EDG + PT L + + + ++ + +N +++IDCLEY +YN F + K+LA L
Sbjct: 150 WITQASEDG--IPPTKLHVIQDYAIRFARENKNAVIIIDCLEYLLLYNEFSSVFKFLANL 207
Query: 319 RDYAVLHNGTLIIVTDRMLWNDKEWSLLMNMF 350
+D+ V+ N LI+ D+ K +++L+N F
Sbjct: 208 KDHLVMMNSALILAVDQKALETKYYNMLLNEF 239
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.143 0.430
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125453586
Number of Sequences: 2977
Number of extensions: 5097049
Number of successful extensions: 14968
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 14963
Number of HSP's gapped (non-prelim): 8
length of query: 355
length of database: 189,106,746
effective HSP length: 52
effective length of query: 303
effective length of database: 157,985,422
effective search space: 47869582866
effective search space used: 47869582866
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 166 (69.1 bits)