BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1355 (PAB1355) DE:Hypothetical protein
(437 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75067 hypothetical protein PAB1355 - Pyrococcus abyssi (st... 897 0.0
pir||D71082 hypothetical protein PH0922 - Pyrococcus horikoshii ... 654 0.0
gb|AAK41652.1| Conserved hypothetical protein [Sulfolobus solfat... 368 e-101
pir||A75137 hypothetical protein PAB0600 - Pyrococcus abyssi (st... 270 2e-71
pir||A71134 hypothetical protein PH0837 - Pyrococcus horikoshii ... 254 1e-66
pir||A75105 hypothetical protein PAB1562 - Pyrococcus abyssi (st... 241 1e-62
pir||B75201 hypothetical protein PAB0083 - Pyrococcus abyssi (st... 209 6e-53
pir||D72356 conserved hypothetical protein - Thermotoga maritima... 201 2e-50
gb|AAK41775.1| Conserved hypothetical protein [Sulfolobus solfat... 133 4e-30
emb|CAC11862.1| (AL445065) conserved hypothetical protein [Therm... 111 1e-23
gb|AAK41695.1| Conserved hypothetical protein [Sulfolobus solfat... 82 1e-14
gb|AAK41406.1| Conserved hypothetical protein [Sulfolobus solfat... 73 5e-12
>pir||B75067 hypothetical protein PAB1355 - Pyrococcus abyssi (strain Orsay)
>gi|5458944|emb|CAB50431.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 437
Score = 897 bits (2294), Expect = 0.0
Identities = 437/437 (100%), Positives = 437/437 (100%)
Query: 1 MIEQFNPWWKGKEFISEDEDYRKWEESGVKWVPRVIEDISLEPFSLNFIFGPRQVGKTTL 60
MIEQFNPWWKGKEFISEDEDYRKWEESGVKWVPRVIEDISLEPFSLNFIFGPRQVGKTTL
Sbjct: 1 MIEQFNPWWKGKEFISEDEDYRKWEESGVKWVPRVIEDISLEPFSLNFIFGPRQVGKTTL 60
Query: 61 LKLIIKRLLDSGVNPKAIFYLRCDYLSDYRELMNALEEYMELREIEGIENSYIFLDEITF 120
LKLIIKRLLDSGVNPKAIFYLRCDYLSDYRELMNALEEYMELREIEGIENSYIFLDEITF
Sbjct: 61 LKLIIKRLLDSGVNPKAIFYLRCDYLSDYRELMNALEEYMELREIEGIENSYIFLDEITF 120
Query: 121 PREWFRAIKLYVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFV 180
PREWFRAIKLYVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFV
Sbjct: 121 PREWFRAIKLYVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFV 180
Query: 181 GVVAPELYRKIPVVREISKVRECLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGKGRVS 240
GVVAPELYRKIPVVREISKVRECLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGKGRVS
Sbjct: 181 GVVAPELYRKIPVVREISKVRECLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGKGRVS 240
Query: 241 GDTYDTYLSWVRGDIIKFGKSEEVARMIMKTILDKVPSPIGWNTIAREIDIGSHKTVFSY 300
GDTYDTYLSWVRGDIIKFGKSEEVARMIMKTILDKVPSPIGWNTIAREIDIGSHKTVFSY
Sbjct: 241 GDTYDTYLSWVRGDIIKFGKSEEVARMIMKTILDKVPSPIGWNTIAREIDIGSHKTVFSY 300
Query: 301 IEFLEKSFILKVLHYFDPNTLEPDFRKEKKVHLIDPFLYELFSRWCLVEKPSEDKIVESV 360
IEFLEKSFILKVLHYFDPNTLEPDFRKEKKVHLIDPFLYELFSRWCLVEKPSEDKIVESV
Sbjct: 301 IEFLEKSFILKVLHYFDPNTLEPDFRKEKKVHLIDPFLYELFSRWCLVEKPSEDKIVESV 360
Query: 361 VASHLARKYEVGYWRNGKEVDVVTKSGIGFEVKWKGKVTPSRLRVGKIKEVITLSKDDIS 420
VASHLARKYEVGYWRNGKEVDVVTKSGIGFEVKWKGKVTPSRLRVGKIKEVITLSKDDIS
Sbjct: 361 VASHLARKYEVGYWRNGKEVDVVTKSGIGFEVKWKGKVTPSRLRVGKIKEVITLSKDDIS 420
Query: 421 TDPLMIPVPIFLACLEV 437
TDPLMIPVPIFLACLEV
Sbjct: 421 TDPLMIPVPIFLACLEV 437
>pir||D71082 hypothetical protein PH0922 - Pyrococcus horikoshii
>gi|3257335|dbj|BAA30018.1| (AP000004) 435aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 435
Score = 654 bits (1670), Expect = 0.0
Identities = 296/435 (68%), Positives = 371/435 (85%)
Query: 1 MIEQFNPWWKGKEFISEDEDYRKWEESGVKWVPRVIEDISLEPFSLNFIFGPRQVGKTTL 60
MIE FNPWWKG+E I EDEDYRKW S V+WVP VI+ ISLEPFSLN IFGPRQVGKTTL
Sbjct: 1 MIEHFNPWWKGREGIEEDEDYRKWIGSEVRWVPEVIKKISLEPFSLNIIFGPRQVGKTTL 60
Query: 61 LKLIIKRLLDSGVNPKAIFYLRCDYLSDYRELMNALEEYMELREIEGIENSYIFLDEITF 120
LKLI+K+LLD G NP++IFYLRCDY+SDY+ELMN ++EY+E++E EGI++SYI LDE+TF
Sbjct: 61 LKLIVKKLLDEGKNPRSIFYLRCDYISDYKELMNVIDEYLEIKETEGIKSSYILLDEVTF 120
Query: 121 PREWFRAIKLYVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFV 180
P+EWFRAIKLY+DMGKF+NDVLILTGS SMY KGE+ETFPGRRGKGK+ +M PL+FR+F+
Sbjct: 121 PKEWFRAIKLYIDMGKFRNDVLILTGSTSMYTKGEVETFPGRRGKGKDAVMLPLTFREFI 180
Query: 181 GVVAPELYRKIPVVREISKVRECLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGKGRVS 240
+ +P+L+ +P + ++KV ECLK +P+ +EL+ LF LYL SGGFPRA+KD+L +VS
Sbjct: 181 KIASPKLHSVLPRINSLNKVEECLKAIPFIEELNSLFKLYLISGGFPRAVKDLLKHNKVS 240
Query: 241 GDTYDTYLSWVRGDIIKFGKSEEVARMIMKTILDKVPSPIGWNTIAREIDIGSHKTVFSY 300
+TY+TY+SW+RGDI+K GKSEEVAR IMKTI+ K+PSP+ W+ IA+EIDIGSHKTVFSY
Sbjct: 241 EETYETYISWMRGDILKLGKSEEVARRIMKTIIKKLPSPVSWHGIAKEIDIGSHKTVFSY 300
Query: 301 IEFLEKSFILKVLHYFDPNTLEPDFRKEKKVHLIDPFLYELFSRWCLVEKPSEDKIVESV 360
IE E+ F+++VL Y DP+ LE DF++EKKVHLIDPFLY L SRW L E+PSEDKIVESV
Sbjct: 301 IELFERMFLIRVLPYIDPDKLEADFKREKKVHLIDPFLYHLVSRWTLTEEPSEDKIVESV 360
Query: 361 VASHLARKYEVGYWRNGKEVDVVTKSGIGFEVKWKGKVTPSRLRVGKIKEVITLSKDDIS 420
VA+H+AR+YEVGYWR+G+E+DVVT+ G+G EVKW V S ++VGKI++VITLSK S
Sbjct: 361 VATHVARRYEVGYWRDGREIDVVTREGVGIEVKWSDNVKVSPVKVGKIRKVITLSKSKFS 420
Query: 421 TDPLMIPVPIFLACL 435
DPL+IPV +FL+C+
Sbjct: 421 RDPLVIPVSVFLSCI 435
>gb|AAK41652.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 409
Score = 368 bits (935), Expect = e-101
Identities = 185/434 (42%), Positives = 278/434 (63%), Gaps = 30/434 (6%)
Query: 6 NPWWKGKEFISEDEDYRKWEESGVKWVPRVIEDISLEPFSLNFIFGPRQVGKTTLLKLII 65
N WW+GK++I EDED +KW + KW+P+ I ISL+PFSLNFI GPRQVGKTTL+KL+I
Sbjct: 4 NIWWRGKDYIEEDEDIKKWNSAKFKWIPKEINKISLQPFSLNFIVGPRQVGKTTLIKLLI 63
Query: 66 KRLLDSGVNPKAIFYLRCDYLSDYRELMNALEEYMELREIEGIENSYIFLDEITFPREWF 125
K+LL+S NP +IFY CD +SDY EL+ +Y+++R+ EGI++S+IFLDE+TF +EW+
Sbjct: 64 KKLLESNHNPLSIFYCSCDLVSDYEELLKRTRDYLKIRKQEGIKSSFIFLDEVTFVKEWY 123
Query: 126 RAIKLYVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFVGVVAP 185
RA+K +D G+ +DV+ ++GS S+ + + E+FPGRRG G ++I+YPLSF ++ V+ P
Sbjct: 124 RAVKHLIDTGELTSDVVTVSGSSSLTILKQKESFPGRRGNGTDVILYPLSFSGYINVINP 183
Query: 186 ELYRKIPVVREISKVRECLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGKGRVSGDTYD 245
++ +VR W E+ LF YL+ GG P +I +
Sbjct: 184 KI-----------EVRP-----GWYSEIEELFESYLKVGGLPPSINGL--------SPLK 219
Query: 246 TYLSWVRGDIIKFGKSEEVARMIMKTILDKVPSPIGWNTIAREIDIGSHKTVFSYIEFLE 305
TY W+ +I + G+ E +A+ I+ +L PS + +N+IA+EI + +H+TV YI+
Sbjct: 220 TYTEWIIYEINRVGRDEMLAKQILSAVLSTTPSKVSYNSIAKEIGV-NHRTVAEYIKLFN 278
Query: 306 KSFILKVLHYFDPNTLEPDFRKEKKVHLIDPFLYELFSRWCLVEKPSEDKIVESVVASHL 365
F+ LH+ D NT ++RK+ K+H +DP Y++ S W V++P + IVE +VASHL
Sbjct: 279 DMFLTLTLHFIDVNTGYYNYRKQIKIHFVDPLFYDVMSTWTGVKRPDDPIIVEGIVASHL 338
Query: 366 ARKYEVGYWRNGK-EVDVVT-KSGIGFEVKWKGKVTPSRLRVGKIKEVITLSKDDISTDP 423
+R Y +GY GK E+DVVT IG+EVK++ + ++ GK+K+VITLSK +
Sbjct: 339 SRIYSIGYTEVGKEEIDVVTLPEVIGYEVKYRERTKQVKVIAGKMKKVITLSKHGEND-- 396
Query: 424 LMIPVPIFLACLEV 437
PV +FLA L +
Sbjct: 397 -TFPVHLFLAELNI 409
>pir||A75137 hypothetical protein PAB0600 - Pyrococcus abyssi (strain Orsay)
>gi|5458321|emb|CAB49810.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 397
Score = 270 bits (683), Expect = 2e-71
Identities = 164/422 (38%), Positives = 240/422 (56%), Gaps = 49/422 (11%)
Query: 2 IEQFNPWWKGKEFISEDEDYRKWEESGVKWVPRVIEDISLEPFSLNFIFGPRQVGKTTLL 61
I NPWW+GKE D ++W+E + W PR ++++SL+PFSLNF+ GPRQVGKTT +
Sbjct: 6 IAYMNPWWEGKE----DYHVKRWKEQKLHWKPRWLKELSLKPFSLNFVLGPRQVGKTTGI 61
Query: 62 KLIIKRLLDSGVNPKAIFYLRCDYLSDYRELMNALEEYMELREIEGIENSYIFLDEITFP 121
KL+I+ LL + P+ I YL + LS YREL+ L E+ EL+ EGI+ YIFLDE+TF
Sbjct: 62 KLLIQELLRNNP-PEGILYLNVEVLSSYRELLTILREFQELKVREGIKTGYIFLDEVTFL 120
Query: 122 REWFRAIKLYVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFV- 180
W+R +K +D G +NDV+ +TGS S+ +K +IE FPGRRG GK I + PLSF +++
Sbjct: 121 EGWWRGVKPLIDAGLLENDVITITGSSSLKVKKDIELFPGRRGHGKTIEVMPLSFSEYIE 180
Query: 181 --GVVAPELYRKIPVVREISKVRECLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGKGR 238
G+ PEL+R +++ +LF YL +GGFP +I
Sbjct: 181 IMGIKKPELHR---------------------EKVLKLFEDYLTTGGFPPSI-------- 211
Query: 239 VSGDTYDTYLSWVRGDIIKFGKSEEVARMIMKTILDKVPSPIGWNTIAREIDIGSHKTVF 298
+G + L G++++FGKS E+AR I+ PS + +A S+K +
Sbjct: 212 -NGFPMEDLLGAYIGELVRFGKSLEIARETFAAIIRSSPSATSFRALAGMTSGYSYKVIQ 270
Query: 299 SYIEFLEKSFILKVLHYFDPNTLEPDFRKEKKVHLIDPFLYELFSRWCLVEKPSEDKIVE 358
Y+EF + +IL + + N + +R+EKK DP L +LF+ W +E ED + E
Sbjct: 271 DYVEFFTELYILGIAYLKQGNQIM--YRREKKFFFRDPLLAKLFAMWSGMEL-REDALYE 327
Query: 359 SVVASHLARKY-EVGYWRNGKEVDVVTKSGIGFEVKWKGKVTPSRLRVGKIKEVITLSKD 417
+V H+ R++ EV Y+RN EVDVV K+ + EVK GK R VI L ++
Sbjct: 328 WIVQEHVYRRFGEVYYYRNSYEVDVVAKN-LRIEVK-AGKAHRRYPR-----NVIVLERE 380
Query: 418 DI 419
DI
Sbjct: 381 DI 382
>pir||A71134 hypothetical protein PH0837 - Pyrococcus horikoshii
>gi|3257248|dbj|BAA29931.1| (AP000003) 396aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 396
Score = 254 bits (642), Expect = 1e-66
Identities = 147/393 (37%), Positives = 226/393 (57%), Gaps = 37/393 (9%)
Query: 2 IEQFNPWWKGKEFISEDEDYRKWEESGVKWVPRVIEDISLEPFSLNFIFGPRQVGKTTLL 61
I NPWW+GKE D ++WE+ V W P+ I +ISL+PFSLNF+ GPRQVGKTT +
Sbjct: 8 ITYMNPWWEGKE----DYHVKQWEKQKVHWEPKWIREISLKPFSLNFVLGPRQVGKTTGI 63
Query: 62 KLIIKRLLDSGVNPKAIFYLRCDYLSDYRELMNALEEYMELREIEGIENSYIFLDEITFP 121
KL+I+++L+ P+++ YL + L YREL++ + E+ EL++ EGI+ YIFLDE +
Sbjct: 64 KLLIQKILEENP-PESVLYLNLEILPTYRELLDIIREFQELKKEEGIKTGYIFLDEASSL 122
Query: 122 REWFRAIKLYVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFVG 181
W+R +K +D G +NDV+ +TGS S+ ++ +IE FPGRRG GK + + PLSF ++
Sbjct: 123 EGWWRGVKPLIDSGLLENDVITVTGSSSLRVRRDIELFPGRRGGGKTLEVMPLSFPEYAR 182
Query: 182 VVAPELYRKIPVVREISKVRECLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGKGRVSG 241
V+ + ++ E SKV +LF Y+++GGFP G ++G
Sbjct: 183 VMGLKKHK-----LEGSKV-------------IKLFEKYIQTGGFP---------GSING 215
Query: 242 DTYDTYLSWVRGDIIKFGKSEEVARMIMKTILDKVPSPIGWNTIAREIDIGSHKTVFSYI 301
+ L G+ ++FGKS E+A+ I ++ PS + +A S+K V YI
Sbjct: 216 FPMEDLLGAYIGEFVRFGKSLEIAKEIFSALIRSAPSATSFRALAEMTSGYSYKVVQDYI 275
Query: 302 EFLEKSFILKVLHYFDPNTLEPDFRKEKKVHLIDPFLYELFSRWCLVEKPSEDKIVESVV 361
EF +IL + + N + +R+EKK DP L +LFS W E +D + E +V
Sbjct: 276 EFFRDLYILGMAYLKQGNQVM--YRREKKFFFRDPLLAKLFSLWSGTE-IGKDALYEWIV 332
Query: 362 ASHLARKY-EVGYWRNGKEVDVVTKSGIGFEVK 393
H+ RK+ E+ Y+RN E+D++ S + EVK
Sbjct: 333 QEHVFRKFGEIHYFRNSYEIDIIA-SDMKIEVK 364
>pir||A75105 hypothetical protein PAB1562 - Pyrococcus abyssi (strain Orsay)
>gi|5458654|emb|CAB50142.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 405
Score = 241 bits (608), Expect = 1e-62
Identities = 144/395 (36%), Positives = 220/395 (55%), Gaps = 40/395 (10%)
Query: 1 MIEQFNPWWKGKEFISEDEDYRKWEESGVKWVPRVIEDISLEPFSLNFIFGPRQVGKTTL 60
M+E NPWW F D D+ +E+ K P+ + ++SL PFSLNF+ GPR+VGKT
Sbjct: 20 MLELQNPWW----FSEPDRDWELFEKLTYKLRPKWLGELSLRPFSLNFVVGPRRVGKTLG 75
Query: 61 LKLIIKRLLDSGVNPKAIFYLRCDYLSDYRELMNALEEYMELREIEGIENSYIFLDEITF 120
+KL+I+ LL P AIFY CD L DYREL++ L +Y+ L++ +G+++++IFLDE++
Sbjct: 76 IKLLIRELLKRVDTPYAIFYFSCDVLEDYRELLDILNDYLRLKKRKGVKSAFIFLDEVSL 135
Query: 121 PREWFRAIKLYVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFV 180
+W+RA+K +D G+ KNDV+ +TGS+S+ + ETF GRRGKGK + + PLSF ++
Sbjct: 136 VDDWWRALKFLIDRGELKNDVVTVTGSISLTIGQHFETFGGRRGKGKTVKVMPLSFHEYY 195
Query: 181 GVVAPELYRKIPVVREISKVRECLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGKGRVS 240
G+ E + +SK E +F YL +GG+ + +L
Sbjct: 196 GLFYDEFF--------LSKGVE-------------VFESYLETGGYLAYLNGIL------ 228
Query: 241 GDTYDTYLSWVRGDIIKFGKSEEVARMIMKTILDKVPSPIGWNTIAREIDIGSHKTVFSY 300
+ + ++ D+ +S ++AR IM ILDK PSP +N IA+ + + H TV Y
Sbjct: 229 --KVEELVGLLKADLKALDRSTDLARDIMGAILDKAPSPTSFNAIAKVVGVSPH-TVRDY 285
Query: 301 IEFLEK-SFILKVLHYFDPNTLEPDFRKEKKVHLIDPFLYELFSRWCLVEKPSEDKIVES 359
+E E +L+VL+ + P RKE+K+ L DP + W + + E
Sbjct: 286 VELFEAFHVLLQVLYLGGDGKIYP--RKERKLILRDPLIVRAMELWTR-RRIDRAVLYEW 342
Query: 360 VVASHLARKY-EVGYWRNGKEVDVVTKSGIGFEVK 393
+V HL RK+ EV Y+RN EVD + + EVK
Sbjct: 343 LVQEHLYRKFGEVFYYRNSYEVDAIA-GNLKVEVK 376
>pir||B75201 hypothetical protein PAB0083 - Pyrococcus abyssi (strain Orsay)
>gi|5457566|emb|CAB49057.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 399
Score = 209 bits (526), Expect = 6e-53
Identities = 135/397 (34%), Positives = 214/397 (53%), Gaps = 40/397 (10%)
Query: 2 IEQFNPWWKGKEFISEDEDYRKWEESGVKWVPRVIEDISLEPFSLNFIFGPRQVGKTTLL 61
+E++NPWW F ED D +W K++P I ++SLEPFS+NFI GPR+VGKT +
Sbjct: 3 LEEYNPWW----FHEEDPDIEEWNTLEYKYMPSWIRELSLEPFSVNFIIGPRRVGKTLGV 58
Query: 62 KLIIKRLLDSGV-NPKAIFYLRCDYLSDYRELMNALEEYMELREIEGIENSYIFLDEITF 120
KL+IK+LL++ + NP IFY C L D +L++ L Y++L+E + I++S IFLDE+T
Sbjct: 59 KLLIKQLLENRISNPYEIFYYDCTMLDDQNDLLDVLRAYLKLKESKRIKSSLIFLDEVTS 118
Query: 121 PREWFRAIKLYVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFV 180
R W++ I ++ K +NDV+++ GSV + L I F GRRG GK + + PL FRD+
Sbjct: 119 VRNWWKGIIDLINRKKLRNDVVVIMGSVLINLDRSIGHFAGRRGNGKILEIMPLGFRDY- 177
Query: 181 GVVAPELYRKIPVVREISKVRECLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGKGRVS 240
Y+ I V E ++ + F +YL++GG+ + + K +
Sbjct: 178 -------YQLIFGVEEY-----------FERKGQEAFEMYLKTGGYAAYLNRRIRKSDIV 219
Query: 241 GDTYDTYLSWVRGDI--IKFGKSEEVARMIMKTILDKVPSPIGWNTIAREIDIGSHKTVF 298
G ++ D+ ++ K E AR I+ I+ K PSP+ ++ +AR++ I + TV
Sbjct: 220 GS--------LKADLRSLEREKDPETAREILGAIISKAPSPVSYSELARDVGI-NRDTVR 270
Query: 299 SYIEFLEKSFILKVLHYFDPNTLEPDFRKEKKVHLIDPFLYELFSRWCLVEKPSEDKIVE 358
SYI L + IL + + + + K +K+ + DP + + W V K + + E
Sbjct: 271 SYISVLVELKILLEIPFSEHGKMVLQ-NKNRKIAIRDPLMARALAEWAKV-KLEDSVLYE 328
Query: 359 SVVASHLARKYEVGYW--RNGKEVDVVTKSGIGFEVK 393
VV HL RK+ Y+ E+D V G+ EVK
Sbjct: 329 WVVQEHLYRKFREIYYFMSENYEIDAVV-PGMRVEVK 364
>pir||D72356 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981136|gb|AAD35701.1|AE001735_14 (AE001735)
conserved hypothetical protein [Thermotoga maritima]
Length = 463
Score = 201 bits (505), Expect = 2e-50
Identities = 142/449 (31%), Positives = 223/449 (49%), Gaps = 24/449 (5%)
Query: 6 NPWWKGKEFISEDEDYRKWEESGVKWVPR-VIEDISLEPFSLNFIFGPRQVGKTTLLKLI 64
NPWW+ E I+ D +E S K+ P + + I L + I GPRQVGKTT LKL
Sbjct: 8 NPWWRDPEIINTDRHISMFENSTFKYFPENLFKKIPLNKPGIYTIRGPRQVGKTTFLKLY 67
Query: 65 IKRLLDSGVNPKAIFYLRCDYLSDYRELMNALEEYMELREIEGIENSYIFLDEITFPREW 124
I++LL GV P IF+ CD + D EL+ ++ Y ++ E + E Y+F+DEIT +W
Sbjct: 68 IRKLLRDGVKPSNIFFFTCDAVKDRFELIETMKAYFQIFERKAGETRYLFIDEITAVEDW 127
Query: 125 FRAIKLYVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFVGVVA 184
++IK VD+G +N +LILTGS + LK E PGR+G G++++ PL+F +F+ +
Sbjct: 128 QKSIKYLVDIGLLENSLLILTGSSAFDLKRSSERLPGRKGYGEDLVYLPLTFGEFLESLG 187
Query: 185 PELYRKIPVVREISKVRECLKLLPWKDE-LHRLFLLYLRSGGFPRAIKDVLGKGRVSGDT 243
+ R + V K E L++L K+ L F+ YL +GGFP+ I L +G++ T
Sbjct: 188 ISVER-MSVDDIFLKSEEELRILYLKNSFLKEYFVKYLNTGGFPKVIDVFLKEGKIDEIT 246
Query: 244 YDTYLSWVRGDIIKFGKSEEVARMIMKTILDKVPSPIGWNTIAREID--IGSHKTVFSYI 301
+ ++ GD K+ S I K + D V WN++ I S T+ Y
Sbjct: 247 KGVFRDFILGDAEKYLGSRIKVIEIFKKLPDIVGQRFSWNSLVDIFSGAIESVDTIQKYF 306
Query: 302 EFLEKSFILKVLHYFDPNTLEPDFRKEKKVHLIDPFLYELFSRWCLVEKPSEDKIVESVV 361
E+L SFIL + + D + +K+KK + ID + ++ ++ +IVE +
Sbjct: 307 EYLGYSFILMNVFFVDISRKTVRLKKQKKTYPIDRVVVDIIEE-ISGKQIKLPQIVEMLT 365
Query: 362 ASHLARKYEV-------------GYWRNGKEVDVVTKSG---IGFEVKWKGKVTPSRLRV 405
HL + Y G EVD V + G I E+ ++ + S
Sbjct: 366 LRHLMGNGKTLPNGMNLYDGPFFWYSDRGNEVDFVFEHGDSLIPVEINFQNNIHRSDYAG 425
Query: 406 GK--IKEVITLSKDDISTDPLMIPVPIFL 432
K K+ I +++D I D ++ VP +L
Sbjct: 426 MKKVFKKGIVITQDAIFRDENIVAVPAWL 454
>gb|AAK41775.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 287
Score = 133 bits (331), Expect = 4e-30
Identities = 98/282 (34%), Positives = 148/282 (51%), Gaps = 25/282 (8%)
Query: 6 NPWWKGKEFISEDEDYRKWEESGVKWVPRVIEDISLEPFSLNFIFGPRQVGKTTLLKLII 65
NPWW K I EDE ++ + + I++ +L I GPRQVGKTT LK I
Sbjct: 17 NPWWVDKNRILEDEHVKR-----ARVIVPPIDESAL-------ILGPRQVGKTTYLKTTI 64
Query: 66 KRLLDSGVNPKAIFYLRCDYLSDYRELMNALEEYMELREIEGIENSYIFLDEITFPREWF 125
K LL+ V+ ++I + CD S EL+ + EY L E E++YIFLDEIT +W
Sbjct: 65 KTLLER-VDSRSILFFSCDAFSKKEELIGLVNEYRTLVNRE--ESAYIFLDEITSVSDWN 121
Query: 126 RAIKLYVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFVGVVAP 185
A+ + G F N ++ +TGS S+ L+ E+ PGR K+ + YPL+FR +
Sbjct: 122 TALLHLFNAGYFNNSLVYVTGSSSINLRKEM--LPGR--PIKKYVFYPLNFRVYFDSFYK 177
Query: 186 ELYRKIPVVREISKVRE-CLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGKGRVSGDTY 244
+L + V E ++ E LKLLP+ EL++ L Y+R GGF + +S Y
Sbjct: 178 KLIQDHVKVDEKDELYENALKLLPYISELNKALLEYVRRGGF---FATSFSENPLS--LY 232
Query: 245 DTYLSWVRGDIIKFGKSEEVARMIMKTILDKVPSPIGWNTIA 286
+TY + + +K + E V ++I++ I++ S I NT A
Sbjct: 233 ETYKDAILSEFLKTERKESVFKVIIRKIIESYGSRISENTSA 274
>emb|CAC11862.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 441
Score = 111 bits (276), Expect = 1e-23
Identities = 120/421 (28%), Positives = 193/421 (45%), Gaps = 81/421 (19%)
Query: 1 MIEQFNPWWKGKEFISE-DEDYRKWEESGVKWVPRVIEDISLEPFSLNFIFGPRQVGKTT 59
M+ +FN WW S+ +R+ + +K R+I+D S+ F +G R+VGKTT
Sbjct: 5 MLYRFNEWWITGTVRSDLTGRFRRMDYPALK---RLIDDRSIVLF-----YGLRRVGKTT 56
Query: 60 LLKLIIKRLLDSGVNPKAIFYLRCDYLS-DYRELMNALEEYMELREIEGIENSYIFLDEI 118
++ II LL G P+ I Y D S D E+++ E + + I Y+FLDE+
Sbjct: 57 IMYQIISDLLKDGTEPERILYFSFDESSGDIDEMISLYAETVLKKPITEAPRIYMFLDEV 116
Query: 119 TFPREWFRAIKLYVDMGKFKNDVLILTGSVSM-YLKGEIETFPGRRGKGKEIIMYPLSFR 177
+W IK++ D+ + N +L+GS S+ LKG ET GR K + PLSF
Sbjct: 117 QKAEDWENRIKIFYDL--YPNIKFVLSGSSSLNVLKGSSETLAGRIVLVK---IEPLSFS 171
Query: 178 DFVGVVAPEL-YRKIPVVREISKVRECLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGK 236
+F + E+ Y K+ R+I L + + Y+ GGFP + +
Sbjct: 172 EFCKLKGHEVPYEKVAYARDI---------------LSPMLMEYIEKGGFPELVWE---- 212
Query: 237 GRVSGDTYDTYLSWVRGDII----------KFG-KSEEVARMIMKTI---------LDKV 276
D Y S+VR +I +FG + ++ R +M+TI LDK+
Sbjct: 213 ----NDPY-KIRSYVRSIVIDRIVTRDIPQEFGIRDMDLMRRLMETILMNPGVILNLDKI 267
Query: 277 PSPIGWNTIAREIDIGSHKTVFSYIEFLEKSFILKVLHYFDPNTLEPDFRKEKKVHLIDP 336
S G N I T+ ++I ++E +F+++ + + P +E RK KKV+ P
Sbjct: 268 SSSFGRNRI----------TISNFISYMEYAFLIRTVSNYRPG-VEAASRKLKKVYPYTP 316
Query: 337 FLYELFSRWCLVEKPSEDKIVESVVASHLARKYEVGYWRNGK-EVDVVTKSG---IGFEV 392
Y + + K++E+ +A+ L+ Y Y+R G E+D V G I EV
Sbjct: 317 AFY--LAMLAPQDAYDAGKLMENAMAAILSPGY---YFRAGNTEIDFVLDHGGVRIPIEV 371
Query: 393 K 393
K
Sbjct: 372 K 372
>gb|AAK41695.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 410
Score = 81.9 bits (199), Expect = 1e-14
Identities = 100/382 (26%), Positives = 180/382 (46%), Gaps = 58/382 (15%)
Query: 12 KEFISEDEDYRKWEESGVKWVPRVIEDIS--LEPFSLNFIFGPRQVGKTTLLKLIIKRLL 69
K +S+ D + E+ K V R + ++ LE + I G R+ GK+TL L++KR
Sbjct: 7 KRVLSDQRDVLE-EKMSRKLVERDVPNLLKYLEVPNALAILGVRRSGKSTLSLLLLKR-- 63
Query: 70 DSGVNPKAIFYLRCDYLSDYRELMNALEEYME-LREIEGIENSYIFLDEITFPREWFRAI 128
K Y+ D Y + L + ++ + E+ G++ YI LDEI + W +
Sbjct: 64 ------KKFAYVNFDDERFYNLNIGDLNKVLQAIYELYGVDVDYIVLDEIHNVKGWELFV 117
Query: 129 KLYVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFVGVVAPELY 188
D+ K LI+TGS S L GE+ T+ G+ + I++P SF++++ Y
Sbjct: 118 SRLRDVKK-----LIITGSNSKMLSGELATY--LTGRHSDYILFPFSFQEYL------KY 164
Query: 189 RKIPVVREISKVRECLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGKGRVSGDTYDTYL 248
+++ V ++V L K+EL + Y GGFP A+ +LGK +V+ D
Sbjct: 165 KEVKVEYFSTRVISTL-----KNELEK----YTEVGGFPEAL--MLGKEQVNVIYNDILF 213
Query: 249 SWVRGDIIKFGKSEEVA--RMIMKTILDKVPSPIGWNTIAREIDIGSHKTVFSYIEFLEK 306
DI+ K E+ R +T++ + I ++IA+ + + + +TV + L +
Sbjct: 214 K----DIVSRYKIREIEKFREFARTVISYYSNEISLSSIAKILGL-NKRTVEKWASGLRE 268
Query: 307 SFILKVLHYFDP---NTLEPDFRKEKKVHLIDPFLYELFSRWCLVEKPSEDKIVESVVAS 363
++ L +F P L+ KKV+++D + + ++ + +I+E++VA
Sbjct: 269 AY----LTFFIPRYGEKLKQRLTYNKKVYVVDVGIVSNLA----IKGKDKGRIIENLVAI 320
Query: 364 HLARKYE----VGYWRNGKEVD 381
L R+ + + Y RN EVD
Sbjct: 321 KLLRELQGEEKLYYMRNNYEVD 342
>gb|AAK41406.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 432
Score = 73.4 bits (177), Expect = 5e-12
Identities = 87/381 (22%), Positives = 171/381 (44%), Gaps = 41/381 (10%)
Query: 20 DYRKWEESGVKWVPRVIEDISLEPFSLNF---IFGPRQVGKTTLLKLIIKRLLDS-GVNP 75
D+ W ++ + R D L+ + G ++ GK+T++ ++K+L++ G +P
Sbjct: 12 DWNFWYKNQFVGIEREYSDQLLDLLEKGLAISVIGVKRSGKSTIINQVVKKLIEKKGEDP 71
Query: 76 --KAIFYLRCDYLSDYR---ELMNALEEYMELREIEGIENSYIFLDEITFPREWFRAIKL 130
I D R +L + E Y ELR+ + YIFLDE+ + W ++
Sbjct: 72 FDTLIVNFEDSRFGDIRTANDLFSLYELYKELRKKKKDSKPYIFLDEVQKIKGWEGFVRS 131
Query: 131 YVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFVGVVAPELYRK 190
VD + + +++I + S+ K E GR + ++PLSF++F+ ++
Sbjct: 132 IVD--RKEANIVISGSTASVNNKSVREVLAGRH---LILEVFPLSFKEFLE------FKN 180
Query: 191 IPVVREISKVRECLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGKGRVSGDTYDTYLSW 250
I + E+ + + + E+ LF YL GGFP + + K ++ Y+
Sbjct: 181 IRLETELDMIAK-------ESEIKVLFSEYLSYGGFPLVVSNERDKEKILLQLYEDI--- 230
Query: 251 VRGDIIKFG--KSEEVARMIMKTILDKVPSPIGWNTIAREIDIGSHKTVFSYIEFLEKSF 308
+ D+I ++EE A+ + + V + I + I+R ++I + V Y E ++ ++
Sbjct: 231 IFKDVISECNIRNEEEAKNLAIFYISNVGNKIRFRKISRSLNI-PFRNVQRYTECMKNAY 289
Query: 309 ILKVLHYFDPNTLEPDFRKEKKVHLIDPFLYELFSRWCLVEKPSEDKIVESVVASHLARK 368
++ + P L + +KKV+ ID + + + + E+++ L R+
Sbjct: 290 LIFFVKALSPK-LSEMAKYDKKVYCIDNGISNVLGYRL---NQNIGSLFENLIFLELLRR 345
Query: 369 Y---EVGYWRNGK-EVDVVTK 385
Y V Y+R + EVD V K
Sbjct: 346 YGINNVFYYRGRRGEVDFVVK 366
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.143 0.436
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174591455
Number of Sequences: 2977
Number of extensions: 7884664
Number of successful extensions: 19953
Number of sequences better than 1.0e-10: 12
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19908
Number of HSP's gapped (non-prelim): 12
length of query: 437
length of database: 189,106,746
effective HSP length: 52
effective length of query: 385
effective length of database: 157,985,422
effective search space: 60824387470
effective search space used: 60824387470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)