BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1356 (PAB1356) DE:ABC transporter, periplasmic binding
protein
(322 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75067 abc transporter, periplasmic binding protein PAB1356... 628 e-179
pir||G71165 hypothetical protein PH0524 - Pyrococcus horikoshii ... 504 e-142
gi|11499565 ABC transporter, periplasmic binding protein [Archae... 87 3e-16
pir||F72750 hypothetical protein APE0531 - Aeropyrum pernix (str... 82 1e-14
pir||T46756 Zn-binding lipoprotein adcA [imported] - Streptococc... 74 2e-12
>pir||A75067 abc transporter, periplasmic binding protein PAB1356 - Pyrococcus
abyssi (strain Orsay) >gi|5458943|emb|CAB50430.1|
(AJ248287) ABC transporter, periplasmic binding protein
[Pyrococcus abyssi]
Length = 322
Score = 628 bits (1603), Expect = e-179
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MKRLILIMFTLTLLLPPSMAQEKPLVVTSLPAIASIIREAFGDSVNVVYLVPPGVEPHQY 60
MKRLILIMFTLTLLLPPSMAQEKPLVVTSLPAIASIIREAFGDSVNVVYLVPPGVEPHQY
Sbjct: 1 MKRLILIMFTLTLLLPPSMAQEKPLVVTSLPAIASIIREAFGDSVNVVYLVPPGVEPHQY 60
Query: 61 QLSPSQIELLRKADVIVTTGHLPAEMKIQELKESGEIPGIVLGIEDYERYGFRYLPERWY 120
QLSPSQIELLRKADVIVTTGHLPAEMKIQELKESGEIPGIVLGIEDYERYGFRYLPERWY
Sbjct: 61 QLSPSQIELLRKADVIVTTGHLPAEMKIQELKESGEIPGIVLGIEDYERYGFRYLPERWY 120
Query: 121 EGKNNPHGIWLDPRNAIAIAKATANALLTLHPELKEINEELEDFELKINSIVEAYSGVLS 180
EGKNNPHGIWLDPRNAIAIAKATANALLTLHPELKEINEELEDFELKINSIVEAYSGVLS
Sbjct: 121 EGKNNPHGIWLDPRNAIAIAKATANALLTLHPELKEINEELEDFELKINSIVEAYSGVLS 180
Query: 181 GKKAIIELPSQQYALEWLGIEVVDSIKPEAEVPAKSVDSISAKADVVVYDVSTPKTLKDA 240
GKKAIIELPSQQYALEWLGIEVVDSIKPEAEVPAKSVDSISAKADVVVYDVSTPKTLKDA
Sbjct: 181 GKKAIIELPSQQYALEWLGIEVVDSIKPEAEVPAKSVDSISAKADVVVYDVSTPKTLKDA 240
Query: 241 SVKLSEKLGVPLANVTVLWVKENYSKVLVENTKSIIRAMTQEGKVVVKSSSSDVGKYSVI 300
SVKLSEKLGVPLANVTVLWVKENYSKVLVENTKSIIRAMTQEGKVVVKSSSSDVGKYSVI
Sbjct: 241 SVKLSEKLGVPLANVTVLWVKENYSKVLVENTKSIIRAMTQEGKVVVKSSSSDVGKYSVI 300
Query: 301 SLIVGIVVGVSIGIVIRKCPVL 322
SLIVGIVVGVSIGIVIRKCPVL
Sbjct: 301 SLIVGIVVGVSIGIVIRKCPVL 322
>pir||G71165 hypothetical protein PH0524 - Pyrococcus horikoshii
>gi|3256929|dbj|BAA29612.1| (AP000002) 325aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 325
Score = 504 bits (1283), Expect = e-142
Identities = 249/325 (76%), Positives = 288/325 (88%), Gaps = 3/325 (0%)
Query: 1 MKRLILIMFTLTLLLPPSMAQEK--PLVVTSLPAIASIIREAFGDSVNVVYLVPPGVEPH 58
MK+++ + + L P ++QEK P+VVTSLP+IASIIREA GDSV ++YLVPPGVEPH
Sbjct: 1 MKKILTFVVIILLFAQPVISQEKHKPVVVTSLPSIASIIREALGDSVEIIYLVPPGVEPH 60
Query: 59 QYQLSPSQIELLRKADVIVTTGHLPAEMKIQELKESGEIPGIVLGIEDYERYGFRYLPER 118
QYQLSP QI LLRKADVIVTTGHLPAEMK+ ELK+SGEIPG+VL IEDYERYGFRYLPER
Sbjct: 61 QYQLSPDQIALLRKADVIVTTGHLPAEMKVLELKKSGEIPGVVLSIEDYERYGFRYLPER 120
Query: 119 WYEGKNNPHGIWLDPRNAIAIAKATANALLTLHPELKE-INEELEDFELKINSIVEAYSG 177
WY GKNNPHGIWLDPRNA+AIA+AT +AL+ LHPELK+ I L FE KIN ++E+YSG
Sbjct: 121 WYTGKNNPHGIWLDPRNALAIAEATGDALVELHPELKDVIRNNLRRFEDKINVVIESYSG 180
Query: 178 VLSGKKAIIELPSQQYALEWLGIEVVDSIKPEAEVPAKSVDSISAKADVVVYDVSTPKTL 237
+L+GKKAIIELPSQQY LEWLGIEVVDSIKPEAEVPAKSVDSI+ ADVVVYD +TP+TL
Sbjct: 181 ILAGKKAIIELPSQQYTLEWLGIEVVDSIKPEAEVPAKSVDSITPSADVVVYDEATPQTL 240
Query: 238 KDASVKLSEKLGVPLANVTVLWVKENYSKVLVENTKSIIRAMTQEGKVVVKSSSSDVGKY 297
KDAS KLSE+LG+PLANVT+LWVKENYS VL+ENTKSII+AM+++G VVVK+ SSDV KY
Sbjct: 241 KDASRKLSERLGIPLANVTILWVKENYSTVLIENTKSIIKAMSEKGGVVVKTESSDVAKY 300
Query: 298 SVISLIVGIVVGVSIGIVIRKCPVL 322
S+ISLIVGIVVGVSIGIVI++CPVL
Sbjct: 301 SIISLIVGIVVGVSIGIVIKRCPVL 325
>gi|11499565 ABC transporter, periplasmic binding protein [Archaeoglobus
fulgidus] >gi|7482887|pir||F69497 ABC transporter,
periplasmic binding protein homolog - Archaeoglobus
fulgidus >gi|2648556|gb|AAB89271.1| (AE000966) ABC
transporter, periplasmic binding protein [Archaeoglobus
fulgidus]
Length = 322
Score = 87.0 bits (212), Expect = 3e-16
Identities = 84/319 (26%), Positives = 139/319 (43%), Gaps = 29/319 (9%)
Query: 6 LIMFTLTLLLPPSMAQEKPLVVTSLPAIASIIREAFGDSVNVVYLVPPGVEPHQYQLSPS 65
+I+ L+L L S A+ +VVT +P I+ GD V L+PPG +PH + L+
Sbjct: 14 VIIAALSLFLLLSTAEASTIVVT-VPDFKPIVEAVAGDGFEVYSLLPPGSDPHAFSLTVE 72
Query: 66 QIELLRKADVIVTTGHLPAEMKIQELKESGEIPGIVLGIEDYERYGFRYLPERWYEGKNN 125
IE +RKAD+IV +++ E K + E + D+ Y + +E +N
Sbjct: 73 DIEKMRKADLIVLAN---SKLLDFEAKIASEFSNTL----DFRDYNAKLYDFPGFE--SN 123
Query: 126 PHGIWLDPRNAIAIAKATANALLTLHPELKEINEELEDFELKINSIVEA------YSGVL 179
PHG W+ P NA+ IAKA + L ++P K E E+F++ + + EA S
Sbjct: 124 PHGYWMLPENAVGIAKAVKDKLSEMYPGKKAQFE--ENFKVFVERVEEAEKEAKRISEGE 181
Query: 180 SGKKAIIELPSQQYALEWLGIEVVDSIKPE--AEVPAKSVDSISAKADVVVY-DVSTPKT 236
SG+K + +P Y + + V + E A + I K + Y + P+
Sbjct: 182 SGRKYVAMVPGVCYIAKTYNLSVAAVLISEGAGSASAGELAEIRKKLESGDYRGIIVPEF 241
Query: 237 LKDASVKLSEKLGVPLANVTVLWVK-----ENYSKVLVENTKSIIRAMTQEGKVVVKSSS 291
+K + K V N + WV+ Y +L+ N I A G S
Sbjct: 242 MKGGKGEEMAKELVKGTNAKIAWVRFSSGDSAYDTMLISNAARIAYA---GGYAECSRDS 298
Query: 292 SDVGKYSVISLIVGIVVGV 310
+ SV+ ++ +++ V
Sbjct: 299 VWIYVLSVLCVVEALIIAV 317
>pir||F72750 hypothetical protein APE0531 - Aeropyrum pernix (strain K1)
>gi|5104182|dbj|BAA79498.1| (AP000059) 319aa long
hypothetical protein [Aeropyrum pernix]
Length = 319
Score = 81.5 bits (198), Expect = 1e-14
Identities = 77/277 (27%), Positives = 120/277 (42%), Gaps = 43/277 (15%)
Query: 25 LVVTSLPAIASIIREAFGDSVNVVYLVPPGVEPHQYQLSPSQIELLRKADVIVTTGHLPA 84
LVV + P + S + V+ + PGV+PH+ QL P ++ +AD++VT GH PA
Sbjct: 65 LVVVTFPGLKSDVELIACSGDRVIEIYNPGVDPHEAQLDPRAARMVAEADIVVTGGHTPA 124
Query: 85 EMKIQELKESGEIPGI--VLGIEDYERYGFRYLPERWYEGKNNPHGIWLDPRNAIAIAKA 142
++K EL SG + + + GIE E +G N H P N
Sbjct: 125 DLKAAEL-ASGTVVDVTRIPGIEILET----------PDGSPNLHYPIYHPENYRLFLSR 173
Query: 143 TANALLTLHPE------LKEINEELEDFELKINSIVEAYSGVLSGKKAIIELPSQQYALE 196
A A+ PE L+ ++LED +E G+L G +A+ + P+ QY
Sbjct: 174 LAEAMQEKRPECDYIGNLRVALKKLED--------LERLQGLLKGSEAVADHPAAQYPAH 225
Query: 197 WLGIEVVDSIKPEAEVPAKSVDSISAKADVVVYDVSTPKTLKDASVKLS----------E 246
WLG EVV I E A +V + ++ T+ D+ V +S E
Sbjct: 226 WLGAEVV-LIIGGGEEWAPTVQELEKAERLLASGSVAFITVDDSGVPVSKAGEWLLREAE 284
Query: 247 KLGVPLANVTVLWVKENYSKVLVENTKSIIRAMTQEG 283
+LG +V+ VK Y++ + + S I +EG
Sbjct: 285 RLG-----ASVILVKAPYTEGSIIDKLSYIAVQIEEG 316
>pir||T46756 Zn-binding lipoprotein adcA [imported] - Streptococcus pneumoniae
(fragment) >gi|3758895|emb|CAA96185.1| (Z71552) AdcA
protein [Streptococcus pneumoniae]
Length = 423
Score = 74.1 bits (179), Expect = 2e-12
Identities = 77/326 (23%), Positives = 148/326 (44%), Gaps = 38/326 (11%)
Query: 1 MKRLILIMFTLTLLLPPSMAQEKPL-----VVTSLPAIASIIREAFGDSVNVVYLVPPGV 55
MK++ L++ +L L + + +K +VT+ + ++ GD+ NV L+ G
Sbjct: 1 MKKISLLLASLCALFLVACSNQKQADGKLNIVTTFYPVYEFTKQVAGDTANVELLIGAGT 60
Query: 56 EPHQYQLSPSQIELLRKADVIVTTGH-----LPA------EMKIQELKESGEIPGIVLGI 104
EPH+Y+ S + ++ AD V +P + K++ +K +G++ ++ G
Sbjct: 61 EPHEYEPSAKAVAKIQDADTFVYENENMETWVPKLLDTLDKKKVKTIKATGDML-LLPGG 119
Query: 105 EDYERYGFRYLPERWYEGKNNPHGIWLDPRNAIAIAKATANALLTLHPELKEINEE-LED 163
E+ E G E + + +PH +WL P AI + + + L +P+ KE E+
Sbjct: 120 EEEE--GDHDHGEEGHHHEFDPH-VWLSPVRAIKLVEHIRDTLSADYPDKKETFEKNAAA 176
Query: 164 FELKINSIVEAYSGVLSGKKAIIELPSQQYALEWLGIE------VVDSIKPEAEVPAKSV 217
+ K+ S+ +AY+ LS K +Q A +L ++ + + P+AE A +
Sbjct: 177 YIEKLQSLDKAYAEGLSQAKE-KSFVTQHAAFNYLALDYGLKQVAISGLSPDAEPSAARL 235
Query: 218 DSIS--AKADVVVYDVSTPKTLKDASVKLSEKLGV------PLANVTVLWVK--ENYSKV 267
++ K + + Y + + LS++ GV PL ++T K ENY V
Sbjct: 236 AELTEYVKKNKIAYIYFEENASQALANTLSKEAGVKTDVLNPLESLTEEDTKAGENYISV 295
Query: 268 LVENTKSIIRAMTQEGKVVVKSSSSD 293
+ +N K++ + QEG + + D
Sbjct: 296 MEKNLKALKQTTDQEGPAIEPEKAED 321
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.135 0.375
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116339506
Number of Sequences: 2977
Number of extensions: 4853194
Number of successful extensions: 12200
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12192
Number of HSP's gapped (non-prelim): 5
length of query: 322
length of database: 189,106,746
effective HSP length: 59
effective length of query: 263
effective length of database: 153,796,013
effective search space: 40448351419
effective search space used: 40448351419
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 165 (68.7 bits)