BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1357 (PAB1357) DE:GTP-BINDING PROTEIN
(397 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75066 GTP-binding protein PAB1357 - Pyrococcus abyssi (str... 798 0.0
pir||H71165 probable GTP-binding protein - Pyrococcus horikoshii... 733 0.0
gb|AAF97355.1| (AY005820) Obg-like protein [Thermococcus zilligii] 690 0.0
pir||C64466 GTP-binding protein - Methanococcus jannaschii >gi|1... 428 e-119
pir||B69069 GTP-binding protein - Methanobacterium thermoautotro... 419 e-116
gb|AAK41039.1| GTP binding protein [Sulfolobus solfataricus] 414 e-115
emb|CAB57559.1| (Y18930) gtp-binding protein [Sulfolobus solfata... 414 e-115
gi|11498960 GTP-binding protein [Archaeoglobus fulgidus] >gi|745... 411 e-114
gb|AAG19036.1| (AE005003) GTP-binding protein homolog; Gbp5 [Hal... 361 1e-98
pir||G72586 hypothetical protein APE1164 - Aeropyrum pernix (str... 350 1e-95
gb|AAG19978.1| (AE005079) GTP-binding protein homolog; Gbp1 [Hal... 298 6e-80
emb|CAC12034.1| (AL445065) GTP-binding protein Obg related prote... 262 6e-69
gi|6321649 Ygr210cp [Saccharomyces cerevisiae] >gi|1176059|sp|P4... 218 1e-55
pir||T40467 GTP-binding protein - fission yeast (Schizosaccharom... 212 6e-54
dbj|BAB12908.1| (AP001118) GTP-binding protein [Buchnera sp. APS] 106 6e-22
pir||PC7024 hypothetical 218 protein - Acholeplasma laidlawii (f... 102 7e-21
pir||B72094 GTP binding protein - Chlamydophila pneumoniae (stra... 102 9e-21
dbj|BAA88662.1| (AB035954) GTP binding protein [Chlamydophila pn... 102 9e-21
sp|P44681|YCHF_HAEIN PROBABLE GTP-BINDING PROTEIN HI0393 >gi|107... 99 1e-19
sp|P47270|Y024_MYCGE PROBABLE GTP-BINDING PROTEIN MG024 >gi|1361... 98 2e-19
pir||F71665 hypothetical protein RP604 - Rickettsia prowazekii >... 98 2e-19
pir||T46901 hypothetical protein DKFZp761C10121.1 - human >gi|70... 96 9e-19
gi|9558757 hypothetical protein; homologous yeast-44.2 protein [... 96 9e-19
pir||D81037 GTP-binding protein, probable NMB1838 [imported] - N... 95 1e-18
pir||D82107 GTP-binding protein VC2185 [imported] - Vibrio chole... 95 1e-18
sp|P37518|YYAF_BACSU HYPOTHETICAL 40.1 KD GTP-BINDING PROTEIN IN... 95 2e-18
gb|AAD44500.1| (AF078868) homologous yeast-44.2 protein [Homo sa... 94 3e-18
pir||G82870 GTP-binding protein UU595 [imported] - Ureaplasma ur... 93 5e-18
dbj|BAB07770.1| (AP001520) GTP-binding protein [Bacillus halodur... 93 5e-18
pir||C75402 conserved hypothetical protein - Deinococcus radiodu... 93 5e-18
pir||T30310 probable GTP binding protein - Lactococcus lactis (f... 92 8e-18
pir||E70354 probable GTP-binding protein - Aquifex aeolicus >gi|... 92 8e-18
pir||S48582 hypothetical protein - Mycoplasma capricolum (SGC3) ... 92 1e-17
pir||A81367 probable GTP-binding protein Cj0930 [imported] - Cam... 92 1e-17
pir||F70898 probable gtp-binding protein - Mycobacterium tubercu... 91 2e-17
pir||D71558 probable GTP binding protein - Chlamydia trachomatis... 91 2e-17
gb|AAF73549.1| (AE002304) GTP-binding protein, YchF family [Chla... 90 4e-17
pir||S75088 probable GTP-binding protein sll0245 - Synechocystis... 90 4e-17
sp|P75088|Y024_MYCPN PROBABLE GTP-BINDING PROTEIN MG024 HOMOLOG ... 90 4e-17
pir||C71364 conserved hypothetical GTP-binding protein TP0124 - ... 90 4e-17
pir||C70129 probable GTP-binding protein BB0235 - Lyme disease s... 90 5e-17
pir||B82532 GTP-binding protein XF2641 [imported] - Xylella fast... 89 7e-17
emb|CAB39810.1| (AL049491) putative GTP-binding protein [Mycobac... 89 9e-17
gb|AAF65513.1| (AF108896) GTP-binding protein [Capsicum annuum] 89 1e-16
pir||F75167 GTP-binding protein PAB2026 - Pyrococcus abyssi (str... 87 3e-16
pir||A72280 conserved hypothetical protein - Thermotoga maritima... 87 3e-16
sp|P31216|YCHF_ECOLI PROBABLE GTP-BINDING PROTEIN IN TREA-PTH IN... 86 6e-16
pir||H71047 probable developmentally regulated GTP-binding prote... 85 1e-15
pir||A83061 conserved hypothetical protein PA4673 [imported] - P... 85 2e-15
pir||A64591 probable GTP-binding protein gtp1 - Helicobacter pyl... 84 3e-15
gb|AAF46520.1| (AE003448) CG1354 gene product [Drosophila melano... 83 4e-15
gb|AAA67557.1| (U02423) 35 kDa GTP-binding protein [Escherichia ... 83 4e-15
gb|AAF02843.1|AC009894_14 (AC009894) Similar to GTP-binding prot... 83 4e-15
pir||E71920 hypothetical protein jhp0516 - Helicobacter pylori (... 83 5e-15
gb|AAD25745.1|AC007060_3 (AC007060) Similar to WO8E3.3 gi|388061... 82 2e-14
emb|CAA82332.1| (Z29089) putative ATP/GTP binding protein Ylf2p ... 78 1e-13
pir||F70680 probable obg - Mycobacterium tuberculosis (strain H3... 78 1e-13
gb|AAD29269.1|AF107096_1 (AF107096) putative GTP-binding protein... 78 2e-13
gi|6321773 GTP-binding protein and glycogen phosphorylase (weak)... 76 7e-13
pir||D81007 GTP-binding protein NMB2086 [imported] - Neisseria m... 74 3e-12
pir||S74797 GTP-binding protein obg - Synechocystis sp. (strain ... 74 3e-12
gb|AAB81507.1| (AF019407) GTP-binding protein [Caulobacter cresc... 74 3e-12
pir||E70477 GTP-binding protein obg - Aquifex aeolicus >gi|29842... 73 4e-12
pir||F82030 probable GTP-binding protein NMA0345 [imported] - Ne... 73 4e-12
pir||T38450 probable GTP-binding protein - fission yeast (Schiz... 72 1e-11
sp|P20964|OBG_BACSU SPO0B-ASSOCIATED GTP-BINDING PROTEIN >gi|983... 72 1e-11
gi|6319499 probable purine nucleotide-binding protein; Ybr025cp ... 71 2e-11
pir||E71517 probable GTP binding protein - Chlamydia trachomatis... 71 2e-11
sp|P44915|YHBZ_HAEIN HYPOTHETICAL 43.4 KD GTP-BINDING PROTEIN HI... 70 4e-11
gb|AAF73594.1| (AE002339) GTP-binding protein, GTP1/Obg family [... 70 4e-11
pir||A72065 GTP binding protein - Chlamydophila pneumoniae (stra... 69 8e-11
pir||G81602 GTP1/OBG family protein CP0208 [imported] - Chlamydo... 69 8e-11
gb|AAG22443.1| (AE003664) CG10628 gene product [Drosophila melan... 69 8e-11
>pir||H75066 GTP-binding protein PAB1357 - Pyrococcus abyssi (strain Orsay)
>gi|5458942|emb|CAB50429.1| (AJ248287) GTP-BINDING
PROTEIN [Pyrococcus abyssi]
Length = 397
Score = 798 bits (2039), Expect = 0.0
Identities = 397/397 (100%), Positives = 397/397 (100%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
Query: 61 NYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQ 120
NYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQ
Sbjct: 61 NYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQ 120
Query: 121 PTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTEN 180
PTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTEN
Sbjct: 121 PTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTEN 180
Query: 181 DVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKEGE 240
DVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKEGE
Sbjct: 181 DVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKEGE 240
Query: 241 KRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDRF 300
KRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDRF
Sbjct: 241 KRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDRF 300
Query: 301 GSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKVHT 360
GSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKVHT
Sbjct: 301 GSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKVHT 360
Query: 361 DLGRGFLYAINAKTKRRIGEDYELQFNDIIKIVAVTK 397
DLGRGFLYAINAKTKRRIGEDYELQFNDIIKIVAVTK
Sbjct: 361 DLGRGFLYAINAKTKRRIGEDYELQFNDIIKIVAVTK 397
>pir||H71165 probable GTP-binding protein - Pyrococcus horikoshii
>gi|3256930|dbj|BAA29613.1| (AP000002) 397aa long
hypothetical GTP-binding protein [Pyrococcus horikoshii]
Length = 397
Score = 733 bits (1873), Expect = 0.0
Identities = 350/397 (88%), Positives = 381/397 (95%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTI+ANVGVTYAI +HPCKELGC PNPQ
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60
Query: 61 NYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQ 120
NYEYR GLALIPVKM+DVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVD TGKTD EGQ
Sbjct: 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQ 120
Query: 121 PTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTEN 180
PT+ HDP+EDIEFLEREIDYWIYGILSKGWDKFAKRIKLQ+IKLESAIAEHLSGIGV EN
Sbjct: 121 PTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNEN 180
Query: 181 DVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKEGE 240
DVWEAMH+L LP DPT WSQ+DLLAFASEIRR+NKPM+IAANKADAAS+EQI RL++E E
Sbjct: 181 DVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVREEE 240
Query: 241 KRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDRF 300
KRGYIV+PTSAAAELTLRKAAKAGFI+YIPG+SEFK+L+DM+E+QK+AL++IKEKVLDRF
Sbjct: 241 KRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRF 300
Query: 301 GSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKVHT 360
GSTGVQEVIN+ VF+LL LIPVYPV DENKLTDQFGNVLPHVFLMKKGS PRDLAFKVHT
Sbjct: 301 GSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHT 360
Query: 361 DLGRGFLYAINAKTKRRIGEDYELQFNDIIKIVAVTK 397
DLG+GFLYAINA+TKRR+GEDYELQFNDI+KIV+VT+
Sbjct: 361 DLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSVTR 397
>gb|AAF97355.1| (AY005820) Obg-like protein [Thermococcus zilligii]
Length = 397
Score = 690 bits (1762), Expect = 0.0
Identities = 327/397 (82%), Positives = 370/397 (92%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
ME+GVVGKPNVGKSTFFSAATLVDV+IANYPFTTI+ANVGVTYAIA+HPCKELGC+PNPQ
Sbjct: 1 MEVGVVGKPNVGKSTFFSAATLVDVDIANYPFTTIEANVGVTYAIADHPCKELGCRPNPQ 60
Query: 61 NYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQ 120
NYEY++G ALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHV+D TGKTDAEGQ
Sbjct: 61 NYEYKDGTALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVIDATGKTDAEGQ 120
Query: 121 PTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTEN 180
PT++HDP+EDIEFLEREIDYW+ GIL KGW+KFAKRIKLQ +KLE AIA+HLSGIGV E
Sbjct: 121 PTDHHDPVEDIEFLEREIDYWMLGILKKGWEKFAKRIKLQHMKLEQAIADHLSGIGVKEE 180
Query: 181 DVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKEGE 240
DVWEA+HRLGL DPT W+ ++L A E+R+INKPMIIAANKADAAS+EQI RL KEGE
Sbjct: 181 DVWEAIHRLGLGDDPTKWTDDELFALVRELRKINKPMIIAANKADAASDEQIERLKKEGE 240
Query: 241 KRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDRF 300
KRGY+V+PTSAAAELTLRKAA+AGFIDYIPGSS+F+ILK+MN +Q+KAL +IKE+VL+RF
Sbjct: 241 KRGYLVIPTSAAAELTLRKAARAGFIDYIPGSSDFRILKEMNPQQEKALQLIKERVLERF 300
Query: 301 GSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKVHT 360
GSTGVQEVIN+AVFELL LIPVYPVQDENKLTDQFGNVLPHV+L+ KGS PRDLA+KVHT
Sbjct: 301 GSTGVQEVINRAVFELLKLIPVYPVQDENKLTDQFGNVLPHVYLLPKGSTPRDLAYKVHT 360
Query: 361 DLGRGFLYAINAKTKRRIGEDYELQFNDIIKIVAVTK 397
DLGR FLYA+NA+T RR+G+DY+L+FNDIIKIVA K
Sbjct: 361 DLGRTFLYAVNARTHRRVGDDYKLEFNDIIKIVATAK 397
>pir||C64466 GTP-binding protein - Methanococcus jannaschii
>gi|1591973|gb|AAB99340.1| (U67573) GTP-binding protein,
member of GTP1/OBG-family [Methanococcus jannaschii]
Length = 393
Score = 428 bits (1088), Expect = e-119
Identities = 223/396 (56%), Positives = 284/396 (71%), Gaps = 7/396 (1%)
Query: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNY 62
IG+VGKPNVGKST F+A T EI NYPFTTI N G+ Y + PCKELG K NP+N
Sbjct: 4 IGLVGKPNVGKSTMFNALTEKPAEIGNYPFTTIQPNKGIAYITSPCPCKELGVKCNPRNS 63
Query: 63 EYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQPT 122
+ +G+ IPV++IDVAGLVPGAHEGRG+GNKFLDDLR A A I VVD +GKTDAEG PT
Sbjct: 64 KCIDGIRHIPVEVIDVAGLVPGAHEGRGMGNKFLDDLRQADAFILVVDASGKTDAEGNPT 123
Query: 123 ENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTENDV 182
EN+DP+ED++FL EID WIY IL+K WDK A+R + Q + A+ + LSG+ + E+D+
Sbjct: 124 ENYDPVEDVKFLLNEIDMWIYSILTKNWDKLARRAQ-QEKNIVKALKDQLSGLNIDEDDI 182
Query: 183 WEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKAD-AASEEQINRLIKEGEK 241
A+ + P W++EDLL A ++R+I+KPMIIAANKAD +E+ I RL K E
Sbjct: 183 KMAIR--DMDESPIKWTEEDLLNLAKKLRKISKPMIIAANKADHPDAEKNIERLKK--EF 238
Query: 242 RGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDRFG 301
+ YIV+PTSA EL L++A KAG I E +NE+ ++A IK+ L ++G
Sbjct: 239 KDYIVIPTSAEIELALKRAEKAGIIKRKENDFEIIDESKVNEQMRRAFDYIKD-FLKKYG 297
Query: 302 STGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKVHTD 361
TGVQE INKA F+LL++I VYPV+DENK +D+ GNVLP FL+KKGS RDLA+KVHT+
Sbjct: 298 GTGVQECINKAYFDLLDMIVVYPVEDENKFSDKQGNVLPDAFLVKKGSTARDLAYKVHTE 357
Query: 362 LGRGFLYAINAKTKRRIGEDYELQFNDIIKIVAVTK 397
LG F+YAI+AK K R+G DYEL+ NDIIKIV+ K
Sbjct: 358 LGEKFIYAIDAKKKIRVGADYELKHNDIIKIVSAAK 393
>pir||B69069 GTP-binding protein - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2622634|gb|AAB85990.1| (AE000912)
GTP-binding protein [Methanobacterium
thermoautotrophicum]
Length = 399
Score = 419 bits (1065), Expect = e-116
Identities = 211/399 (52%), Positives = 286/399 (70%), Gaps = 13/399 (3%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
++I V GKPNVGKS+FF+AATL + E+A+YPFTTIDAN V YA PC+ELG + NP+
Sbjct: 5 IQIAVTGKPNVGKSSFFNAATLSEAEVASYPFTTIDANHAVAYASCRCPCRELGVECNPR 64
Query: 61 NYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQ 120
N G+ LIPV++IDVAGLVPGAHEGRGLGNKFLDDLR A A +HV+D +G TD EG+
Sbjct: 65 NSRCINGVRLIPVELIDVAGLVPGAHEGRGLGNKFLDDLRQARAFLHVIDASGSTDEEGR 124
Query: 121 PTE--NHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVT 178
P E +HDP+ED+EFLE EI W+YGIL + W++ ++ +++ + I E LSG G+T
Sbjct: 125 PVEAGSHDPLEDVEFLEEEITMWLYGILERNWERLLRKAASEKLDMNRIIHEQLSGTGIT 184
Query: 179 ENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASE-EQINRLIK 237
D+ EA + + +D W +++LL F E+ RI KPM+I ANKAD S E I RL
Sbjct: 185 PEDIIEASRK--VDADVYSWGKDELLQFLDELLRIAKPMLIVANKADLPSAGENIERL-- 240
Query: 238 EGEKRGY-IVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKD--MNERQKKALLMIKE 294
K Y VVP SA AEL LR+AA+AG I Y PG SEF+I+ + + ++Q+ AL I+E
Sbjct: 241 ---KDAYPHVVPASAEAELALRRAAEAGLISYTPGGSEFEIIDESKLTDKQRAALEYIRE 297
Query: 295 KVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDL 354
VL+ +GSTGVQE IN+AVF+LL++I V+PV+DE++ TDQ GNVLP L+ +GS+PRDL
Sbjct: 298 NVLEVYGSTGVQEAINRAVFDLLDMIVVFPVEDEHRFTDQKGNVLPDAILVPRGSSPRDL 357
Query: 355 AFKVHTDLGRGFLYAINAKTKRRIGEDYELQFNDIIKIV 393
A+ +HT++G FL+A++A+ R+ D+EL+ DII I+
Sbjct: 358 AYLIHTEIGDSFLHAVDARKGMRVASDHELEDGDIISII 396
>gb|AAK41039.1| GTP binding protein [Sulfolobus solfataricus]
Length = 408
Score = 414 bits (1054), Expect = e-115
Identities = 214/397 (53%), Positives = 274/397 (68%), Gaps = 6/397 (1%)
Query: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNY 62
IG++GK NVGKSTFF+AATL DVEIAN PF TI+ N G+ Y + E K NP+N
Sbjct: 11 IGIIGKTNVGKSTFFAAATLKDVEIANRPFVTINPNEGIGYVKVKCAHTEFNVKCNPKNS 70
Query: 63 EYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQPT 122
E IPVK++DVAGL+PGAHEGRGLGNKFLDDLR A ALIHV+D +G T+ EG P
Sbjct: 71 ICIEDYRFIPVKLVDVAGLIPGAHEGRGLGNKFLDDLRQADALIHVIDASGSTNEEGVPV 130
Query: 123 E--NHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTEN 180
E + DP EDI+F+E E+D W Y I++K W KFA+ L L A+ LSG+ V +
Sbjct: 131 EPGSRDPEEDIKFIESELDEWFYSIINKDWAKFARTSDLSGKDLVDALLSKLSGVSVNRS 190
Query: 181 DVWEAMHRLGLPSDPTL-WSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKEG 239
+ E + L + + W+++DL FA +R ++KPMIIAANK+D R +KE
Sbjct: 191 HIIETLKVTKLENLKLMQWTEQDLRVFAKTLRSVSKPMIIAANKSDLPQARNNIRRLKEK 250
Query: 240 EKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDR 299
K +PTSAA+E+ LRKAAKAG I YIPG S+F ILK +NE+QK AL I+ VL
Sbjct: 251 YKWA---IPTSAASEMALRKAAKAGIISYIPGDSDFTILKPLNEKQKSALEYIRTSVLQV 307
Query: 300 FGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKVH 359
+GSTGVQ+ IN A+F+ LN+I YPV+DE KLTD+ GNVLP L+KKGS P+DLA +H
Sbjct: 308 YGSTGVQQAINTAIFDALNMIVTYPVEDERKLTDKNGNVLPDAILLKKGSTPKDLANAIH 367
Query: 360 TDLGRGFLYAINAKTKRRIGEDYELQFNDIIKIVAVT 396
T+L +GFLYAI+ K K R+GE+Y+LQ ND+IKIV+ T
Sbjct: 368 TELAKGFLYAIDVKRKMRVGENYQLQNNDVIKIVSST 404
>emb|CAB57559.1| (Y18930) gtp-binding protein [Sulfolobus solfataricus]
Length = 408
Score = 414 bits (1054), Expect = e-115
Identities = 214/397 (53%), Positives = 274/397 (68%), Gaps = 6/397 (1%)
Query: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNY 62
IG++GK NVGKSTFF+AATL DVEIAN PF TI+ N G+ Y + E K NP+N
Sbjct: 11 IGIIGKTNVGKSTFFAAATLKDVEIANRPFVTINPNEGIGYVKVKCAHTEFNVKCNPKNS 70
Query: 63 EYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQPT 122
E IPVK++DVAGL+PGAHEGRGLGNKFLDDLR A ALIHV+D +G T+ EG P
Sbjct: 71 ICIEDYRFIPVKLVDVAGLIPGAHEGRGLGNKFLDDLRQADALIHVIDASGSTNEEGVPV 130
Query: 123 E--NHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTEN 180
E + DP EDI+F+E E+D W Y I++K W KFA+ L L A+ LSG+ V +
Sbjct: 131 EPGSRDPEEDIKFIESELDEWFYSIINKDWAKFARTSDLSGKDLVDALLSKLSGVSVNRS 190
Query: 181 DVWEAMHRLGLPSDPTL-WSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKEG 239
+ E + L + + W+++DL FA +R ++KPMIIAANK+D R +KE
Sbjct: 191 HIIETLKVTKLENLKLMQWTEQDLRVFAKTLRSVSKPMIIAANKSDLPQARNNIRRLKEK 250
Query: 240 EKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDR 299
K +PTSAA+E+ LRKAAKAG I YIPG S+F ILK +NE+QK AL I+ VL
Sbjct: 251 YKWA---IPTSAASEMALRKAAKAGIISYIPGDSDFTILKPLNEKQKSALEYIRTSVLQV 307
Query: 300 FGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKVH 359
+GSTGVQ+ IN A+F+ LN+I YPV+DE KLTD+ GNVLP L+KKGS P+DLA +H
Sbjct: 308 YGSTGVQQAINTAIFDALNMIVTYPVEDERKLTDKNGNVLPDAILLKKGSTPKDLANAIH 367
Query: 360 TDLGRGFLYAINAKTKRRIGEDYELQFNDIIKIVAVT 396
T+L +GFLYAI+ K K R+GE+Y+LQ ND+IKIV+ T
Sbjct: 368 TELAKGFLYAIDVKRKMRVGENYQLQNNDVIKIVSST 404
>gi|11498960 GTP-binding protein [Archaeoglobus fulgidus]
>gi|7450710|pir||C69420 GTP-binding protein homolog -
Archaeoglobus fulgidus >gi|2649213|gb|AAB89884.1|
(AE001010) GTP-binding protein [Archaeoglobus fulgidus]
Length = 388
Score = 411 bits (1046), Expect = e-114
Identities = 215/399 (53%), Positives = 280/399 (69%), Gaps = 14/399 (3%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
+EIG+ GKPN GKSTFF AATL D EIANYPFTTI NVG+ + + C+ELG K N
Sbjct: 2 IEIGIAGKPNAGKSTFFKAATLADAEIANYPFTTIKPNVGIGHVRVKCVCQELGVKCN-- 59
Query: 61 NYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQ 120
E +G IPVK+IDVAGLVP AH+GRGLGN+FLD+LR + A+IHVVD +G TD EG
Sbjct: 60 --ECVDGWRFIPVKLIDVAGLVPDAHKGRGLGNEFLDNLRQSEAVIHVVDASGSTDEEGN 117
Query: 121 P--TENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVT 178
+P+ED++FL REID W++GIL + WDK +R+K ++ + E L+G+G
Sbjct: 118 EIGVGERNPVEDVKFLYREIDMWLFGILKRNWDKIIRRMKAEKRDAAKFLTEQLAGLGFE 177
Query: 179 ENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKE 238
E V EAM G D + S E L FA E+R+ M+IAANKAD A + + L+K
Sbjct: 178 EWMVREAMRSFG---DVSTLSDEQLRDFAVELRKRRMQMVIAANKADKAPKNLLEELMKL 234
Query: 239 GEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLD 298
E IVVPTSAA EL LR AAK G+I Y+PG S+F+I+K++NE+Q KAL I+E L
Sbjct: 235 DE----IVVPTSAAYELILRTAAKNGYIKYLPGDSDFEIVKELNEKQMKALEKIRE-FLR 289
Query: 299 RFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKV 358
FGSTGVQE IN+ VF+LL+ I VYPV+DENK TD GNVLP L+K+G+ ++LAFK+
Sbjct: 290 EFGSTGVQEAINRVVFDLLDYIVVYPVEDENKFTDSKGNVLPDAMLVKRGTTAKELAFKI 349
Query: 359 HTDLGRGFLYAINAKTKRRIGEDYELQFNDIIKIVAVTK 397
HTD+G+ F+YA++A+TK R+ +DYEL+ ND+IKIV+ K
Sbjct: 350 HTDIGKHFIYALDARTKMRVADDYELKNNDVIKIVSGAK 388
>gb|AAG19036.1| (AE005003) GTP-binding protein homolog; Gbp5 [Halobacterium sp.
NRC-1]
Length = 393
Score = 361 bits (916), Expect = 1e-98
Identities = 179/399 (44%), Positives = 260/399 (64%), Gaps = 15/399 (3%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPC--KELGCKPN 58
+ I + GKPN GKSTF++AAT +V++ANYPFTTIDAN GVT+ PC +E C
Sbjct: 2 LSIALAGKPNAGKSTFYTAATRSEVDVANYPFTTIDANRGVTHVRTACPCLTREERC--- 58
Query: 59 PQNYEY-REGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDA 117
+E+ +G +PV+++DVAGLVPGAHEGRGLGN+FLD+L A +++VVD +G T+
Sbjct: 59 --GHEHCHDGKRYVPVELLDVAGLVPGAHEGRGLGNQFLDELSNADVIVNVVDASGATNE 116
Query: 118 EGQPTE--NHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGI 175
EG+P E +HDP+EDI+F+E E+D W+ GI+ W+ + + +E+AI E ++G
Sbjct: 117 EGEPVEIGDHDPVEDIDFVEEEMDLWLAGIVEDNWESVERASRSPGFDIETAITEMMTGF 176
Query: 176 GVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRL 235
G +E V + P DP WS ED A A +R KP+++ ANK D A EE + RL
Sbjct: 177 GASEYQVAAVLREFDYPDDPIQWSGEDREALARGVRERTKPIVVVANKVDVAPEENVQRL 236
Query: 236 IKEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEK 295
+ + V+P +A EL +R+ A AGF+DY PG +F I D+ + Q++AL ++E
Sbjct: 237 LDLDKP----VIPATAQGELAVRRGADAGFLDYDPGDEDFDITGDVGDDQREALEALRE- 291
Query: 296 VLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLA 355
+ +G TG+Q ++ AV++LL ++ +PVQD++K TD G VLP L+ GS P DLA
Sbjct: 292 TMQEYGGTGMQRALDYAVYDLLEMVTAFPVQDQSKWTDATGTVLPDAVLLDAGSTPVDLA 351
Query: 356 FKVHTDLGRGFLYAINAKTKRRIGEDYELQFNDIIKIVA 394
+ VH+D+G G+L+A+NAKT R IGED EL D++KIV+
Sbjct: 352 YAVHSDIGDGYLHAVNAKTNREIGEDDELGEGDVVKIVS 390
>pir||G72586 hypothetical protein APE1164 - Aeropyrum pernix (strain K1)
>gi|5104835|dbj|BAA80149.1| (AP000061) 410aa long
hypothetical protein [Aeropyrum pernix]
Length = 410
Score = 350 bits (889), Expect = 1e-95
Identities = 192/401 (47%), Positives = 265/401 (65%), Gaps = 12/401 (2%)
Query: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGC-KPNPQN 61
+G+VGK NVGKSTFF+AAT V V+I N PF TI+ NVGV YA ELG + +P N
Sbjct: 8 LGLVGKTNVGKSTFFAAATEVPVKIENRPFVTIEPNVGVGYARKRCAHVELGLPRCDPVN 67
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
EG IPVK++DVAGLVPGAH GRGLGN+FLDD+R A AL+ VVD +G TD EG P
Sbjct: 68 SLCIEGWRFIPVKLLDVAGLVPGAHRGRGLGNRFLDDVRKADALLLVVDASGSTDPEGVP 127
Query: 122 TE--NHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQ-RIKLESAIAEHLSGIGVT 178
+ ++DP+E++ + EI W+ L++ W++FA+R+ + L +A+++ LSG +
Sbjct: 128 VKPGSYDPVEEVGLMLGEIYEWMLQNLARDWERFARRVDTAGNVDLVTALSQRLSGFEIP 187
Query: 179 ENDVWEAMHRLGLPSDP-TLWSQEDLLAFASEIRRINKPMIIAANKADA-ASEEQINRLI 236
V + GL + WS+EDL F + KP +I ANK D +EE + RL
Sbjct: 188 RGVVAGVLEETGLGEKRLSSWSREDLRLFVKLVLERGKPAVILANKVDVPGAEENVERL- 246
Query: 237 KEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKD---MNERQKKALLMIK 293
G VVP SA AEL LR+ A+ G + YIPG +F + KD + + KAL +++
Sbjct: 247 -GSSYPGIPVVPASALAELMLRRLAREGRVRYIPGDPDFTV-KDPGGLGGKALKALELVR 304
Query: 294 EKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRD 353
E+V+ R+G TGV + IN AVF++L++I VYPV+D N+ TD+ G +LP V L+K+GS PRD
Sbjct: 305 ERVMKRWGGTGVVQAINTAVFDVLDMIAVYPVEDPNRYTDREGRILPDVILVKRGSTPRD 364
Query: 354 LAFKVHTDLGRGFLYAINAKTKRRIGEDYELQFNDIIKIVA 394
LA+++HTDLG+ FLYA+NAKTK+R+GE Y LQ D++KIVA
Sbjct: 365 LAYRIHTDLGKTFLYAVNAKTKQRVGEGYRLQDGDVVKIVA 405
>gb|AAG19978.1| (AE005079) GTP-binding protein homolog; Gbp1 [Halobacterium sp.
NRC-1]
Length = 396
Score = 298 bits (756), Expect = 6e-80
Identities = 163/393 (41%), Positives = 230/393 (58%), Gaps = 4/393 (1%)
Query: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNY 62
+G+VGKP+VGKSTFF+AAT DV YPFTTID VG Y E E G + P
Sbjct: 5 VGLVGKPSVGKSTFFNAATNNDVPEGAYPFTTIDPAVGEAYVRVECAAPEFGEECTPATG 64
Query: 63 EYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQPT 122
+G +P K++DVAGL+PGAHEG GLGN+FL DL A LIHVVD +G TD EG+ T
Sbjct: 65 FCEDGTRFVPTKLVDVAGLIPGAHEGAGLGNQFLTDLNEADVLIHVVDFSGTTDIEGEAT 124
Query: 123 ENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTENDV 182
E HDP EDI+FLE E+D W +L KG +++ + + LE +AE +S + +V
Sbjct: 125 EGHDPREDIDFLETELDQWYLDVLEKGIERYEGQ-HMADATLEVELAEQMSAFRTSPEEV 183
Query: 183 WEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKEGEKR 242
+ + L L DP W D L A E+R KPM++AANK D + I + ++
Sbjct: 184 KQVLLALDLAFDPDTWDDADRLELAREMRTRTKPMVVAANKMDTPEAQANWAAITDDDEY 243
Query: 243 GYI-VVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDRFG 301
++ VP SA AE L +A + G +DY G F I+ + ++ Q+ L I+E V + +G
Sbjct: 244 DHLEFVPVSAHAEQALTQADQGGVVDYRAGDDAFTIVGEPSDDQRAGLESIREFVTE-YG 302
Query: 302 STGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKVHTD 361
TGVQ I A+F+ L + PV+P N L G VLP VFL++ + D A+ VH+D
Sbjct: 303 GTGVQSAIEAALFDALGVKPVFP-GSANGLGTADGRVLPDVFLLEPDATAEDFAYAVHSD 361
Query: 362 LGRGFLYAINAKTKRRIGEDYELQFNDIIKIVA 394
+G GFL+A++ + R+I D +L +I+I++
Sbjct: 362 VGDGFLHAVDCRANRQIAADQDLDSRAVIEIIS 394
>emb|CAC12034.1| (AL445065) GTP-binding protein Obg related protein [Thermoplasma
acidophilum]
Length = 382
Score = 262 bits (662), Expect = 6e-69
Identities = 154/398 (38%), Positives = 236/398 (58%), Gaps = 24/398 (6%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
++IG+VG+PNVGKSTFFSAAT + EI ++PFTT+ N+G+T+ + P E+G + NP+
Sbjct: 3 VKIGLVGEPNVGKSTFFSAATQNEAEIGDFPFTTVKPNLGMTFFTVKCPDTEIGARCNPR 62
Query: 61 NYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQ 120
G+ +PV++IDV GL+ GA EGRG+GN+F+D +R A++ +VDV+ + E +
Sbjct: 63 EGYCENGIRHVPVQVIDVPGLIEGASEGRGMGNEFMDAIRDVDAIVLIVDVSSGSVDEIR 122
Query: 121 PTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTEN 180
+ I + EI W + W+ F++R + + E A+ L+ GV+E
Sbjct: 123 --------KSITLVTDEIRKWFADRIYSDWEHFSRRSEAAGERREVALRRKLALFGVSEK 174
Query: 181 DVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKEGE 240
++E + P+ ++W+ +D AS I + KP+I A NK D I + IK
Sbjct: 175 KIYEILETEFFPARLSIWTMDDAYNLASAILKHAKPIIYAGNKGDKIDANTIGK-IKVSI 233
Query: 241 KRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDRF 300
Y+V SA EL +++A AG ID + + F I N++Q+ AL MI DR+
Sbjct: 234 PDIYVV---SAEYELAVKRARNAGLIDSV--LTGFNITGG-NQKQRDALAMI-----DRW 282
Query: 301 GST----GVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAF 356
T + ++I K V + L+ I VYPV DENK TD+ GNVLP ++M +GS DLAF
Sbjct: 283 FRTPDVIRIHDLIEKVVKDTLHYIVVYPVYDENKWTDKAGNVLPDAYVMIQGSTALDLAF 342
Query: 357 KVHTDLGRGFLYAINAKTKRRIGEDYELQFNDIIKIVA 394
+VHTD+G GF+ AIN +TK +G+DY L+ +D+IKI++
Sbjct: 343 RVHTDIGEGFIRAINGRTKMVLGKDYVLKDSDVIKIIS 380
>gi|6321649 Ygr210cp [Saccharomyces cerevisiae]
>gi|1176059|sp|P42942|YG4I_YEAST HYPOTHETICAL 45.2 KD
GTP-BINDING PROTEIN IN TRX1-ZPR1 INTERGENIC REGION
>gi|1077194|pir||S53933 probable membrane protein
YGR210c - yeast (Saccharomyces cerevisiae)
>gi|790501|emb|CAA89003.1| (Z49133) unknown
[Saccharomyces cerevisiae] >gi|1165215|gb|AAA85585.1|
(U40843) ORFS7; Method: conceptual translation supplied
by author [Saccharomyces cerevisiae]
>gi|1323377|emb|CAA97237.1| (Z72995) ORF YGR210c
[Saccharomyces cerevisiae]
Length = 411
Score = 218 bits (549), Expect = 1e-55
Identities = 143/363 (39%), Positives = 197/363 (53%), Gaps = 24/363 (6%)
Query: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELG----CKPN 58
IG+VGKP+ GKST ++ T + +PFTTI+ N Y E C G CKPN
Sbjct: 7 IGIVGKPSSGKSTTLNSLTDAGAAVGAFPFTTIEPNQATGYLQVECACSRFGKEDLCKPN 66
Query: 59 PQNYEY-REGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDA 117
Y + +G IP+K++DVAGLVPGAH GRGLGNKFLDDLR A ALIHVVDV+G TDA
Sbjct: 67 ---YGWCSKGKRHIPIKLLDVAGLVPGAHSGRGLGNKFLDDLRHADALIHVVDVSGTTDA 123
Query: 118 EGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGV 177
EG+ T +DP+ DIE+L+ EI W+ G L K W ++ + + + G G
Sbjct: 124 EGKNTRGYDPLNDIEWLQDEIRLWVEGNLKKRWGSIVRKHTATKSSIVDTLQAQFGGYGS 183
Query: 178 TENDVWEAMHRL-GLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKAD--AASEEQINR 234
+ +A+ RL GLP W E + P ++A NK D A +
Sbjct: 184 HAPMIQKALDRLKGLP-PLEKWDDEWITRVVKSFMMEKFPTVLALNKIDHPDADKNVSKI 242
Query: 235 LIKEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGS-------SEFKILKDMNERQKK 287
++K + + V TSA E+ LRK K GFI Y G+ E LK ++++
Sbjct: 243 MLKYPDTK---AVLTSAVTEVFLRKLKKQGFILYEEGTEFVDTFEDEPDKLKPLDDKILN 299
Query: 288 ALLMIKEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFG-NVLPHVFLMK 346
+ I++ VL RFGSTGV +V+ +A ++L LIPVY V++ T G NV FL+K
Sbjct: 300 RIENIRDLVLYRFGSTGVVQVL-QAATDILGLIPVYTVKNIQTFTGGNGTNVFRDCFLVK 358
Query: 347 KGS 349
+G+
Sbjct: 359 RGT 361
>pir||T40467 GTP-binding protein - fission yeast (Schizosaccharomyces pombe)
>gi|3947879|emb|CAA22290.1| (AL034382) GTP-binding
protein [Schizosaccharomyces pombe]
Length = 409
Score = 212 bits (534), Expect = 6e-54
Identities = 133/359 (37%), Positives = 193/359 (53%), Gaps = 15/359 (4%)
Query: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGC--KPNPQ 60
IG VGKP+ GKST +A T + N+PFTTI+ N + YA E C G K P
Sbjct: 7 IGFVGKPSSGKSTMLNALTDATAKTGNFPFTTIEPNRAIGYAQIECACSRFGLQDKCKPI 66
Query: 61 NYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQ 120
+ G+ IP++++DVAGL+PGAH G+GLGNKFLDDLR A AL+HVVDV+G TDAEG+
Sbjct: 67 YGGCKNGVRSIPIQLLDVAGLIPGAHAGKGLGNKFLDDLRHADALVHVVDVSGTTDAEGK 126
Query: 121 PTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTEN 180
+DP DI +L +EI WI L + W +R + + + SG G T
Sbjct: 127 VCRGYDPSVDIAWLYKEITAWIGNNLREKWPNIVRRHIATKANPVNTLQSQFSGYGSTPA 186
Query: 181 DVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKAD-AASEEQINRLIKEG 239
+ + L L + W + + + I P +IA NK D ++ I+++ ++
Sbjct: 187 VTAKVLDSLHLDTPLEKWDDDTIEKVVNRFVDIKFPTVIALNKIDHPDADANISKIARKE 246
Query: 240 EKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKD--------MNERQKKALLM 291
+ ++ SA +E+ LR+ AK GF+ Y GS L D ++E K +
Sbjct: 247 DPNRLVL--ASAISEVFLRRLAKQGFVKYEEGSEFVDTLDDFPDSGLKPLSENLKTRIAD 304
Query: 292 IKEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQD-ENKLTDQFGNVLPHVFLMKKGS 349
+++ VL R GSTGV V+ KA+ ELLNLIPV+PV++ N V L+K+G+
Sbjct: 305 LQDMVLFRHGSTGVCNVLAKAM-ELLNLIPVFPVKNVHNFANSPNEGVFRDCILVKQGT 362
>dbj|BAB12908.1| (AP001118) GTP-binding protein [Buchnera sp. APS]
Length = 362
Score = 106 bits (261), Expect = 6e-22
Identities = 107/404 (26%), Positives = 166/404 (40%), Gaps = 70/404 (17%)
Query: 4 GVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNYE 63
G++G PNVGKST F+ T + +AN+PF TI N+G+ I E L +PQ
Sbjct: 6 GIIGLPNVGKSTLFNLLTKGNSAVANFPFCTIKPNIGIVPVIDER-INNLNQIVSPQK-- 62
Query: 64 YREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQPTE 123
++ ID+AGLV GA +G GLGN+FL ++R A+ HVV K D
Sbjct: 63 ----TVNAFIEFIDIAGLVKGASQGEGLGNQFLGNIRDVHAIAHVVRCF-KDDNITHIYN 117
Query: 124 NHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTENDVW 183
PI+DI+ + E+ + + K K K+ L+ + + I T
Sbjct: 118 QVQPIKDIDIINSELILSDFDLCEKTILKLQKKTLLKNKETQEKIN--------TLKKCL 169
Query: 184 EAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKEGEKRG 243
+ + + L E L + M IA + S +++L + +K G
Sbjct: 170 NHLKQFFMLKTLNLNKTEKQLISYLRFLTLKPTMYIANINEEKESYYFLDKLNEIAKKEG 229
Query: 244 YIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDRFGST 303
IV+P A EL L K M++ +KK+ + L +
Sbjct: 230 SIVIPIHANLELDLVK---------------------MSDEEKKSFMK-----LFNIKTL 263
Query: 304 GVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKVHTDLG 363
G+ +I+ + LLNLI + V D+ + + GS + A K+H+D
Sbjct: 264 GLNSIISSG-YHLLNLITFFTVGDKE----------IRAWAIPNGSTSIEAAHKIHSDFS 312
Query: 364 RGFL------------YAINAKTK-----RRIGEDYELQFNDII 390
+GF+ Y AK K R G+ Y +Q DII
Sbjct: 313 KGFIRAQIIKYVDFITYKSEAKIKEMGKFRTEGKQYYIQDGDII 356
>pir||PC7024 hypothetical 218 protein - Acholeplasma laidlawii (fragment)
Length = 218
Score = 102 bits (252), Expect = 7e-21
Identities = 67/175 (38%), Positives = 98/175 (55%), Gaps = 21/175 (12%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
+ IG+VG PNVGKST F+A T V ANYPF TID NVGV + + + ++L
Sbjct: 2 LSIGIVGLPNVGKSTLFNAITKSQVTAANYPFATIDPNVGVVH-VKDERLEKLAA----- 55
Query: 61 NYEYREGLALIP--VKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVV---DVTGKT 115
Y+ G +IP ++ ID+AGLV GA G GLGN+FL +R A+ HV+ + + T
Sbjct: 56 --IYKSG-KIIPTTIEFIDIAGLVKGASSGEGLGNQFLSHIRQVDAIAHVIRCFEDSEIT 112
Query: 116 DAEGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAE 170
EG+ DP+ D+E +E E+ + K + K++K +K++ AI E
Sbjct: 113 HVEGKV----DPLRDLEIIEIELRLSDLESVDKRLARLEKQVK---VKIKEAIIE 160
>pir||B72094 GTP binding protein - Chlamydophila pneumoniae (strain CWL029)
>gi|4376598|gb|AAD18470.1| (AE001616) GTP Binding
Protein [Chlamydophila pneumoniae CWL029]
>gi|8163431|gb|AAF73667.1| (AE002205) GTP-binding
protein, YcfH family [Chlamydophila pneumoniae AR39]
>gi|8978695|dbj|BAA98531.1| (AP002546) GTP binding
protein [Chlamydophila pneumoniae J138]
Length = 364
Score = 102 bits (251), Expect = 9e-21
Identities = 100/368 (27%), Positives = 160/368 (43%), Gaps = 51/368 (13%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
E G+VG PNVGKS F+A T V NYPF TID NVG+ I E + L N Q
Sbjct: 5 ECGIVGLPNVGKSGLFNALTGAQVASCNYPFCTIDPNVGIVPVIDER-LEALAKISNSQK 63
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
Y + +K +D+AGLV GA +G GLGN+FL +R A+ HVV D
Sbjct: 64 IIYAD------MKFVDIAGLVKGASDGAGLGNRFLSHIRETHAIAHVVRCFDDPDVT-HV 116
Query: 122 TENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTEND 181
+ +P+EDIE + E+ I+ S + +K KL + K E G + D
Sbjct: 117 SGKVNPVEDIEVINLEL---IFSDFSSAKNIHSKLEKLAKGKRE-------VGALLPLFD 166
Query: 182 VWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKEGEK 241
A GLP + E ++A KPM AN +++ + N +
Sbjct: 167 TIIAHLEKGLPLRTLELTPEQIVALKPYPFLTMKPMFYIANVDESSLPDMDNDYV----- 221
Query: 242 RGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDRFG 301
+A E+ ++ +K + E + + ER + + + EK
Sbjct: 222 --------AAVREVAAKENSKV--VPICVRIEEEIVSLPIEERLEFLMSLGLEK------ 265
Query: 302 STGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKVHTD 361
+G+ ++ +A ++ L LI + + + + +GS+ + A ++HTD
Sbjct: 266 -SGLHRLV-RAAYDTLGLISYFTTGPQES----------RAWTVVRGSSAWEAAGEIHTD 313
Query: 362 LGRGFLYA 369
+ +GF+ A
Sbjct: 314 IQKGFIRA 321
>dbj|BAA88662.1| (AB035954) GTP binding protein [Chlamydophila pneumoniae]
Length = 364
Score = 102 bits (251), Expect = 9e-21
Identities = 100/368 (27%), Positives = 160/368 (43%), Gaps = 51/368 (13%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
E G+VG PNVGKS F+A T V NYPF TID NVG+ I E + L N Q
Sbjct: 5 ECGIVGLPNVGKSGLFNALTGAQVASCNYPFCTIDPNVGIVPVIDER-LEALAKISNSQK 63
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
Y + +K +D+AGLV GA +G GLGN+FL +R A+ HVV D
Sbjct: 64 IIYAD------MKFVDIAGLVKGASDGAGLGNRFLSHIRETHAIAHVVRCFDDPDVT-HV 116
Query: 122 TENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTEND 181
+ +P+EDIE + E+ I+ S + +K KL + K E G + D
Sbjct: 117 SGKVNPVEDIEVINLEL---IFSDFSSAKNIHSKLEKLAKGKRE-------VGALLPLFD 166
Query: 182 VWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKEGEK 241
A GLP + E ++A KPM AN +++ + N +
Sbjct: 167 TIIAHLEKGLPLRTLELTPEQIVALKPYPFLTMKPMFYIANVDESSLPDMDNDYV----- 221
Query: 242 RGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDRFG 301
+A E+ ++ +K + E + + ER + + + EK
Sbjct: 222 --------AAVREVAAKENSKV--VPICVRIEEEIVSLPIEERLEFLMSLGLEK------ 265
Query: 302 STGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKVHTD 361
+G+ ++ +A ++ L LI + + + + +GS+ + A ++HTD
Sbjct: 266 -SGLHRLV-RAAYDTLGLISYFTTGPQES----------RAWTVVRGSSAWEAAGEIHTD 313
Query: 362 LGRGFLYA 369
+ +GF+ A
Sbjct: 314 IQKGFIRA 321
>sp|P44681|YCHF_HAEIN PROBABLE GTP-BINDING PROTEIN HI0393 >gi|1074386|pir||I64150
probable GTP-binding protein HI0393 - Haemophilus
influenzae (strain Rd KW20) >gi|1573365|gb|AAC22052.1|
(U32723) conserved hypothetical GTP-binding protein
[Haemophilus influenzae Rd]
Length = 363
Score = 98.7 bits (242), Expect = 1e-19
Identities = 107/375 (28%), Positives = 159/375 (41%), Gaps = 70/375 (18%)
Query: 4 GVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNYE 63
G+VG PNVGKST F+A T +E ANYPF TI+ N GV P+P+
Sbjct: 6 GIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVV------------PMPDPRLDA 53
Query: 64 YREGL---ALIPVKM--IDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAE 118
E + ++P M +D+AGLV GA +G GLGNKFL ++R A+ HVV D
Sbjct: 54 LAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIV 113
Query: 119 GQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIK--LQRIKLESAIAEHLSGIG 176
DP++DI+ + E+ + + KR K + K E ++ E + +
Sbjct: 114 -HVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELSVMEKI--LP 170
Query: 177 VTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQ--INR 234
V EN + +GL +E+L A S KP + AN + E ++R
Sbjct: 171 VLENA--GMIRSVGL-------DKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDR 221
Query: 235 LIKEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKE 294
+ + K G +VVP AA E SE L D + + L I+E
Sbjct: 222 VREIAAKEGAVVVPVCAAIE------------------SEIAELDDEEKVEFLQDLGIEE 263
Query: 295 KVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDL 354
L+R + +A + LLNL + G + + G+
Sbjct: 264 PGLNR---------VIRAGYALLNLQTYFTA----------GVKEVRAWTVSVGATAPKA 304
Query: 355 AFKVHTDLGRGFLYA 369
A +HTD +GF+ A
Sbjct: 305 AAVIHTDFEKGFIRA 319
>sp|P47270|Y024_MYCGE PROBABLE GTP-BINDING PROTEIN MG024 >gi|1361525|pir||F64202 probable
GTP-binding protein - Mycoplasma genitalium
>gi|3844633|gb|AAC71240.1| (U39681) GTP-binding protein,
putative [Mycoplasma genitalium]
Length = 367
Score = 97.9 bits (240), Expect = 2e-19
Identities = 100/374 (26%), Positives = 160/374 (42%), Gaps = 62/374 (16%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
+ G+VG PNVGKST FSA T + VEIANYPF TI+ N G+ +++ +L NP+
Sbjct: 2 LSAGIVGLPNVGKSTLFSAITNLQVEIANYPFATIEPNTGIV-NVSDERLDKLASLINPE 60
Query: 61 NYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQ 120
Y + +D+AGLV GA +G+GLGN+FL ++R + HVV D +
Sbjct: 61 KIVY------TTFRFVDIAGLVKGASQGQGLGNQFLANIREVDLICHVVRCF--QDKKIV 112
Query: 121 PTENH-DPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESA---IAEHLSGIG 176
N DP+ D E + E ++ ++ RI + K ES E +
Sbjct: 113 HVNNTIDPVFDFEIIVNE-------LIQADFELITNRIGKLKRKAESGDKIAKEEFVLLE 165
Query: 177 VTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLI 236
+ N + + + S+ L + + L + KP++I AN + + +N
Sbjct: 166 IVLNGLKQGQMPIQTLSESELKTIKSLNLLTA------KPILIVAN---VSENDLLNLDN 216
Query: 237 KEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKV 296
E K+ A L +K KA + + + L ++
Sbjct: 217 NEALKK--------LNAFLDQKKIPKA-----------ITVCSLIEKELSGLKLEQRQYF 257
Query: 297 LDRFG---STGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRD 353
LD G +G+ VI +A ++ LNL + FG + KKG N
Sbjct: 258 LDELGLKNYSGLNRVI-QAAYQTLNLWSFF----------TFGKKEVRAWTFKKGWNAPQ 306
Query: 354 LAFKVHTDLGRGFL 367
A ++H+D +GF+
Sbjct: 307 CAGQIHSDFEKGFI 320
>pir||F71665 hypothetical protein RP604 - Rickettsia prowazekii
>gi|3861148|emb|CAA15048.1| (AJ235272) unknown
[Rickettsia prowazekii]
Length = 365
Score = 97.9 bits (240), Expect = 2e-19
Identities = 113/421 (26%), Positives = 180/421 (41%), Gaps = 95/421 (22%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIDANVGVTYAIAEHPCKELGCKPNP 59
+++G+VG PNVGKST F+A T + + ANYPF TI+ N E + + +
Sbjct: 3 LKLGIVGLPNVGKSTLFNALTASQIADAANYPFCTIEPNSSKVLVPDERLQRLVSLVGSN 62
Query: 60 QNYEYREGLALIP--VKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDA 117
+ +IP ++ +D+AGLV GA +G GLGNKFL +R A++HV+ D
Sbjct: 63 K---------MIPSYIEFVDIAGLVKGASKGDGLGNKFLSHIREVDAILHVLRCFEDEDI 113
Query: 118 EGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGV 177
DP+ DIE +E E+ L K + K KR+K K+ IA
Sbjct: 114 M-HVHNKIDPLYDIEVIETELILTDIASLEKHFIKSEKRLKSGDKKMVEQIA-------- 164
Query: 178 TENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRI----NKPMIIAAN--KADAASEEQ 231
+ + ++++ P E L A ++++ +KP++ N + DAA +
Sbjct: 165 ----LLKEIYKVLAEGKPARILNEVL--GADNLKQLQLITSKPILYVCNVFEQDAAIGNK 218
Query: 232 INRLI---KEGEKRGYIVVPTSAAAELTLRKAA--KAGFIDYIPGSSEFKILKDMNERQK 286
+L+ E EK +V+ + +E+ L ++ K F+ YI
Sbjct: 219 FTQLVAKRAETEKTKSLVISSKIESEIALLESVEEKEEFLKYI----------------- 261
Query: 287 KALLMIKEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMK 346
TG+ +VI K + LLNL + + G H + K
Sbjct: 262 ------------GLNKTGLSKVI-KEGYNLLNLKSFFTI----------GPKEAHSWTFK 298
Query: 347 KGSNPRDLAFKVHTDLGRGFLYA--------IN----AKTK-----RRIGEDYELQFNDI 389
G+ A +HTD +GF+ A IN AK K R G+DY++Q DI
Sbjct: 299 DGTLAPAAAGIIHTDFEKGFIRAEVISYEDYINLGSEAKAKEVGKMRLEGKDYKMQDGDI 358
Query: 390 I 390
+
Sbjct: 359 V 359
>pir||T46901 hypothetical protein DKFZp761C10121.1 - human
>gi|7018426|emb|CAB66481.1| (AL136546) hypothetical
protein [Homo sapiens]
Length = 396
Score = 95.6 bits (234), Expect = 9e-19
Identities = 101/386 (26%), Positives = 159/386 (41%), Gaps = 80/386 (20%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDAN---VGVTYAIAEHPCKELGCKP 57
++IG+VG PNVGKSTFF+ T N+PF TID N V V + C
Sbjct: 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLC------- 75
Query: 58 NPQNYEYREGLALIP--VKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVV---DVT 112
+Y + + IP + ++D+AGLV GAH G+GLGN FL + + H+ +
Sbjct: 76 -----QYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130
Query: 113 GKTDAEGQPTENHDPIEDIEFLEREI---DYWIYGILSKGWDKFAKRIKLQRIKLESAIA 169
T EG + DPI DIE + E+ D + G + +K A R +++K E I
Sbjct: 131 DITHVEG----SVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEYDIM 186
Query: 170 EHLSGIGVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASE 229
+ + + H W+ +++ + +KPM+ N ++
Sbjct: 187 CKVKSWVIDQKKPVRFYHD---------WNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYI 237
Query: 230 EQINR-LIKEGE-----KRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNE 283
+ N+ LIK E G +V+P S A EL L++ + E
Sbjct: 238 RKKNKWLIKIKEWVDKCDPGALVIPFSGALELKLQELS-------------------AEE 278
Query: 284 RQKKALLMIKEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVF 343
RQK + + L + I KA F L L + + +
Sbjct: 279 RQKYLEANMTQSALPK---------IIKAGFAALQLEYFFTAGPDE----------VRAW 319
Query: 344 LMKKGSNPRDLAFKVHTDLGRGFLYA 369
++KG+ A K+HTD +GF+ A
Sbjct: 320 TIRKGTKAPQAAGKIHTDFEKGFIMA 345
>gi|9558757 hypothetical protein; homologous yeast-44.2 protein [Homo sapiens]
>gi|5531833|gb|AAD44491.1| (AF078859) PTD004 [Homo
sapiens]
Length = 396
Score = 95.6 bits (234), Expect = 9e-19
Identities = 101/386 (26%), Positives = 159/386 (41%), Gaps = 80/386 (20%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDAN---VGVTYAIAEHPCKELGCKP 57
++IG+VG PNVGKSTFF+ T N+PF TID N V V + C
Sbjct: 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLC------- 75
Query: 58 NPQNYEYREGLALIP--VKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVV---DVT 112
+Y + + IP + ++D+AGLV GAH G+GLGN FL + + H+ +
Sbjct: 76 -----QYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130
Query: 113 GKTDAEGQPTENHDPIEDIEFLEREI---DYWIYGILSKGWDKFAKRIKLQRIKLESAIA 169
T EG + DPI DIE + E+ D + G + +K A R +++K E I
Sbjct: 131 DITHVEG----SVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEYDIM 186
Query: 170 EHLSGIGVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASE 229
+ + + H W+ +++ + +KPM+ N ++
Sbjct: 187 CKVKSWVIDQKKPVRFYHD---------WNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYI 237
Query: 230 EQINR-LIKEGE-----KRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNE 283
+ N+ LIK E G +V+P S A EL L++ + E
Sbjct: 238 RKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELS-------------------AEE 278
Query: 284 RQKKALLMIKEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVF 343
RQK + + L + I KA F L L + + +
Sbjct: 279 RQKYLEANMTQSALPK---------IIKAGFAALQLEYFFTAGPDE----------VRAW 319
Query: 344 LMKKGSNPRDLAFKVHTDLGRGFLYA 369
++KG+ A K+HTD +GF+ A
Sbjct: 320 TIRKGTKAPQAAGKIHTDFEKGFIMA 345
>pir||D81037 GTP-binding protein, probable NMB1838 [imported] - Neisseria
meningitidis (group B strain MD58, group A strain Z2491)
>gi|7227093|gb|AAF42173.1| (AE002533) GTP-binding
protein, putative [Neisseria meningitidis MC58]
>gi|7379353|emb|CAB83908.1| (AL162753) hypothetical
protein NMA0618 [Neisseria meningitidis Z2491]
Length = 363
Score = 95.2 bits (233), Expect = 1e-18
Identities = 104/380 (27%), Positives = 159/380 (41%), Gaps = 74/380 (19%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
++ G+VG PNVGKST F+A T +E ANYPF TI+ NVG+ + + EL NPQ
Sbjct: 3 LKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIV-EVPDPRMAELAKIVNPQ 61
Query: 61 NYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVV---DVTGKTDA 117
+ V+ +D+AGLV GA +G GLGN+FL ++R A+++VV D
Sbjct: 62 K------MQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHV 115
Query: 118 EGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIK------LQRIKLESAIAEH 171
G+ DPI DIE + E+ + K + KR + + + L + H
Sbjct: 116 AGRV----DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVDLCKKLLPH 171
Query: 172 LSGIGVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEE- 230
L D + + GL ++ + L A KP + N A+ E
Sbjct: 172 L--------DEGKPVRSFGLDAEERAMLKPLFLLTA-------KPAMYVGNVAEDGFENN 216
Query: 231 -QINRLIKEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKAL 289
++RL + K VV AA E SE L+D + + A
Sbjct: 217 PHLDRLKELAAKENAPVVAVCAAME------------------SEIAELEDDEKAEFLAE 258
Query: 290 LMIKEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGS 349
+ ++E L+R + +A ++LL L + G + + KG
Sbjct: 259 MGLEEPGLNR---------LIRAGYDLLGLQTYFTA----------GVKEVRAWTIHKGD 299
Query: 350 NPRDLAFKVHTDLGRGFLYA 369
A +HTD RGF+ A
Sbjct: 300 TAPQAAGVIHTDFERGFIRA 319
>pir||D82107 GTP-binding protein VC2185 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9656740|gb|AAF95330.1| (AE004290)
GTP-binding protein [Vibrio cholerae]
Length = 383
Score = 95.2 bits (233), Expect = 1e-18
Identities = 110/399 (27%), Positives = 165/399 (40%), Gaps = 88/399 (22%)
Query: 4 GVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNYE 63
G+VG PNVGKST F+A T +E AN+PF TI+ N GV + + L P+
Sbjct: 26 GIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVV-PVPDPRLDALAAIVKPER-- 82
Query: 64 YREGLALIPVKM--IDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVV---------DVT 112
++P M +D+AGLV GA +G GLGNKFL ++R A+ HVV V
Sbjct: 83 ------ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENENIIHVA 136
Query: 113 GKTDAEGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIK--LQRIKLESAIAE 170
GK P+EDIE + E+ + + +KR K + K E A+ E
Sbjct: 137 GKV----------SPLEDIEIINLELALADLDSCERAILRQSKRAKGGDKEAKFELAVLE 186
Query: 171 HLSGIGVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEE 230
L + ++E G + ++E+LLA KP + AN + E
Sbjct: 187 KLQPV-LSE----------GQSARSVNLTKEELLAVGYLNLLTLKPTMYIANVNENGFEN 235
Query: 231 Q--INRLIKEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKA 288
++ +++ K VV AA E +E L++ + A
Sbjct: 236 NPYLDAVVEFAAKENASVVAVCAAIE------------------AELSELEEEERDEFLA 277
Query: 289 LLMIKEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKG 348
L I+E L+R +G ++LLNL + G + + G
Sbjct: 278 DLGIEEPGLNRVIRSG---------YDLLNLQTYFTA----------GVKEVRAWTIPVG 318
Query: 349 SNPRDLAFKVHTDLGRGFLYAINAKTKRRIGEDYELQFN 387
+ A K+HTD RGF+ A IG + +QFN
Sbjct: 319 ATAPQAAGKIHTDFERGFIRA------EVIGYNDYIQFN 351
>sp|P37518|YYAF_BACSU HYPOTHETICAL 40.1 KD GTP-BINDING PROTEIN IN RPSF-SPO0J INTERGENIC
REGION >gi|2127015|pir||S66016 probable GTP-binding
protein yyaF - Bacillus subtilis
>gi|467376|dbj|BAA05222.1| (D26185) unknown [Bacillus
subtilis] >gi|2636639|emb|CAB16129.1| (Z99124) similar
to hypothetical proteins [Bacillus subtilis]
Length = 366
Score = 94.8 bits (232), Expect = 2e-18
Identities = 102/377 (27%), Positives = 160/377 (42%), Gaps = 71/377 (18%)
Query: 4 GVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNYE 63
G+VG PNVGKST F+A T E ANYPF TID NVG+ + + ++L NP+
Sbjct: 6 GIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIV-EVPDDRLQKLTELVNPKK-- 62
Query: 64 YREGLALIPV--KMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
+P + D+AG+V GA +G GLGNKFL +R A+ HVV D
Sbjct: 63 ------TVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAF-SDDNITHV 115
Query: 122 TENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEH--LSGIGVTE 179
+ DPI+DIE + E+ I + + + KL + K + A+ E LS +
Sbjct: 116 SGKVDPIDDIETINLEL---ILADMETVEKRITRVSKLAKQKDKDAVFEFEILSKL---- 168
Query: 180 NDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAAN-----KADAASEEQINR 234
+ +E+ P+ +++E +KP++ AN AD + E + +
Sbjct: 169 KEAFESEK----PARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAK 224
Query: 235 L--IKEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMI 292
+ GE IVV +E I + G + L+++ I
Sbjct: 225 IREYAAGENAEVIVVCAKIESE-----------IAELEGEEKQMFLEELG---------I 264
Query: 293 KEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPR 352
+E LD+ + KA + LL L + ++ + KKG
Sbjct: 265 QESGLDQ---------LIKASYSLLGLATYFTAGEQE----------VRAWTFKKGMKAP 305
Query: 353 DLAFKVHTDLGRGFLYA 369
+ A +H+D RGF+ A
Sbjct: 306 ECAGIIHSDFERGFIRA 322
>gb|AAD44500.1| (AF078868) homologous yeast-44.2 protein [Homo sapiens]
Length = 396
Score = 94.0 bits (230), Expect = 3e-18
Identities = 100/386 (25%), Positives = 158/386 (40%), Gaps = 80/386 (20%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDAN---VGVTYAIAEHPCKELGCKP 57
++IG+VG PNVGKSTFF+ T N+PF TID N V V + C
Sbjct: 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLC------- 75
Query: 58 NPQNYEYREGLALIP--VKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVV---DVT 112
+Y + + IP + ++D+AGL GAH G+GLGN FL + + H+ +
Sbjct: 76 -----QYHKPASKIPAFLNVVDIAGLAKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130
Query: 113 GKTDAEGQPTENHDPIEDIEFLEREI---DYWIYGILSKGWDKFAKRIKLQRIKLESAIA 169
T EG + DPI DIE + E+ D + G + +K A R +++K E I
Sbjct: 131 DITHVEG----SVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEYDIM 186
Query: 170 EHLSGIGVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASE 229
+ + + H W+ +++ + +KPM+ N ++
Sbjct: 187 CKVKSWVIDQKKPVRFYHD---------WNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYI 237
Query: 230 EQINR-LIKEGE-----KRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNE 283
+ N+ LIK E G +V+P S A EL L++ + E
Sbjct: 238 RKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELS-------------------AEE 278
Query: 284 RQKKALLMIKEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVF 343
RQK + + L + I KA F L L + + +
Sbjct: 279 RQKYLEANMTQSALPK---------IIKAGFAALQLEYFFTAGPDE----------VRAW 319
Query: 344 LMKKGSNPRDLAFKVHTDLGRGFLYA 369
++KG+ A K+HTD +GF+ A
Sbjct: 320 TIRKGTKAPQAAGKIHTDFEKGFIMA 345
>pir||G82870 GTP-binding protein UU595 [imported] - Ureaplasma urealyticum
>gi|6899606|gb|AAF31009.1|AE002158_7 (AE002158)
GTP-binding protein [Ureaplasma urealyticum]
Length = 368
Score = 93.2 bits (228), Expect = 5e-18
Identities = 103/371 (27%), Positives = 165/371 (43%), Gaps = 53/371 (14%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
+ G+VG PNVGKST F+ T VE ANYPF TI+ N+G+ I + K L P
Sbjct: 3 LSAGLVGLPNVGKSTLFNTITNSRVEAANYPFATIEPNIGIV-NINDPRLKRLASLVVPD 61
Query: 61 NYEYREGLALIPV--KMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAE 118
++P K +D+AGLV GA +G GLGN+FL+++R A+ HVV + +
Sbjct: 62 K--------IVPTTFKFVDIAGLVKGASQGEGLGNQFLNNIRDVDAICHVV----RCFDD 109
Query: 119 GQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVT 178
T H+ I+ + +I Y ++ D KRI + K +S + +
Sbjct: 110 KSITHVHNKIDALS----DIHVINYELILSDLDIIEKRISRIKKKADSGDKDARREYLIL 165
Query: 179 ENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKE 238
N + EA+ + L S L ++E+L S KP++ AN ++ N +
Sbjct: 166 FN-IEEALKKGQLASSVKL-TKEELKIINSFNLITLKPILYIANISE-------NEISNP 216
Query: 239 GEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLD 298
+ Y+ V A + R A + I+Y E IL + ++ L IK
Sbjct: 217 DLNKEYLKV-KKYAQDNDARCVALSAKIEY-----EISILDEESKSIFIQDLGIK----- 265
Query: 299 RFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKV 358
+TG+ E++ K ++LLNL K +G + G + + A +
Sbjct: 266 ---TTGLDEIV-KQTYDLLNL----------KTYFTYGKQEVRAWTFINGMSAPECAGII 311
Query: 359 HTDLGRGFLYA 369
H+D +GF+ A
Sbjct: 312 HSDFEKGFIKA 322
>dbj|BAB07770.1| (AP001520) GTP-binding protein [Bacillus halodurans]
Length = 366
Score = 93.2 bits (228), Expect = 5e-18
Identities = 65/172 (37%), Positives = 90/172 (51%), Gaps = 21/172 (12%)
Query: 4 GVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNYE 63
G+VG PNVGKST F+A T E ANYPF TID NVG+ + + ++L NP+
Sbjct: 6 GIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGIV-EVPDPRLQKLTELVNPKK-- 62
Query: 64 YREGLALIPV--KMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVV---DVTGKTDAE 118
+P + D+AG+V GA +G GLGN+FL +R A+ HVV D T
Sbjct: 63 ------TVPTAFEFTDIAGIVEGASKGEGLGNQFLSHIRQVDAISHVVRCFDDENITHVS 116
Query: 119 GQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAE 170
G + DPI DI + E+ I L +F++ KL + K + A+AE
Sbjct: 117 G----SVDPIRDISVINLEL---ILADLESVDKRFSRVQKLAKTKDKEAVAE 161
>pir||C75402 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6459140|gb|AAF10955.1|AE001984_5 (AE001984)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 365
Score = 93.2 bits (228), Expect = 5e-18
Identities = 108/420 (25%), Positives = 169/420 (39%), Gaps = 87/420 (20%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
+ IG+VG PNVGKST F+A T ANYPF TI+ NVG E + +
Sbjct: 3 LAIGIVGLPNVGKSTLFNAITRAGALAANYPFATIEPNVGRVTVPDE--------RLSAL 54
Query: 61 NYEYREGLALIP-----VKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKT 115
+ + +G + P V+ +D+AGLV GA +G GLGN+FL ++R A+ HVV
Sbjct: 55 SQVFTKGERVPPIIPTFVEFVDIAGLVKGASQGEGLGNQFLANIREVDAIAHVVRCFEDP 114
Query: 116 DAEGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIK--LQRIKLESAIAEHLS 173
+ DP++DIE + E+ L K K+ K + K + +AE +
Sbjct: 115 NVV-HVAGRVDPLDDIETINTELILADLAGLEKRAQNLQKKAKGGDKDAKEQLELAEQII 173
Query: 174 GIGVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKAD---AASEE 230
+ + +P D L + KP+I AN + E
Sbjct: 174 QVLGEGKPARAGSYEGKIPKDFGLIT--------------IKPVIYVANVGEDDLTGDNE 219
Query: 231 QINRLIKEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALL 290
+ ++ + G VV SA E G + +P L D+
Sbjct: 220 YVQKVREYAAAEGAQVVKISAQIE---------GELAEMPEDEAAAFLHDLG-------- 262
Query: 291 MIKEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSN 350
++E LD+ G +E L LI + E ++ + ++KG
Sbjct: 263 -VEESGLDQLVKVG---------YETLGLI-TFITSGEKEV---------RAWTIRKGEK 302
Query: 351 PRDLAFKVHTDLGRGFLYA--------------INAKTK---RRIGEDYELQFNDIIKIV 393
+ A ++H+DL RGF+ A AK K R G+DY +Q DI+ ++
Sbjct: 303 APEAAGEIHSDLERGFIRAEVIEWQKMVEAGGWAPAKAKGWVRTEGKDYVMQDGDIMNVL 362
>pir||T30310 probable GTP binding protein - Lactococcus lactis (fragment)
>gi|2909718|gb|AAC12968.1| (U76424) putative GTP binding
protein [Lactococcus lactis]
Length = 214
Score = 92.4 bits (226), Expect = 8e-18
Identities = 72/179 (40%), Positives = 92/179 (51%), Gaps = 30/179 (16%)
Query: 4 GVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCK--ELGCKPN--- 58
G+VG PNVGKST F+A T E ANYPF TID NVG+ E K EL KP
Sbjct: 6 GIVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGMVEVPDERLNKLTEL-IKPKKTV 64
Query: 59 PQNYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAE 118
P +E+ D+AG+V GA G GLGNKFL ++R A+IHVV D E
Sbjct: 65 PTTFEF-----------TDIAGIVKGASRGEGLGNKFLANIREVDAIIHVVRA---FDDE 110
Query: 119 GQPTENH------DPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQR-IKLESAIAE 170
EN+ DP+ DIE + E+ I L ++A+ K+ R K + A+AE
Sbjct: 111 NVMRENNREDAFIDPMADIETINLEL---ILADLESVNKRYARVEKIARTAKDKDAVAE 166
>pir||E70354 probable GTP-binding protein - Aquifex aeolicus
>gi|2983235|gb|AAC06832.1| (AE000698) hypothetical
protein [Aquifex aeolicus]
Length = 370
Score = 92.4 bits (226), Expect = 8e-18
Identities = 116/425 (27%), Positives = 181/425 (42%), Gaps = 102/425 (24%)
Query: 3 IGVVGKPNVGKSTFFSAAT-LVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
+G+VG PNVGKST F+A T + + ANYPF TI+ NVGV E K
Sbjct: 5 LGIVGLPNVGKSTLFNALTKTMKAQAANYPFCTIEPNVGVVEVPDERLYKLA-------- 56
Query: 62 YEYREGLALIP--VKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVV---DVTGKTD 116
E + + P ++ +D+AGLV GA +G GLGN+FL +R A+ V+ +
Sbjct: 57 -EIEKSQKITPTFIEFVDIAGLVKGASKGEGLGNQFLSHIREVDAVAMVLRAFEDENIVH 115
Query: 117 AEGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRI-KLQRI-----KLESAIAE 170
EG + DP+ D E +E E +++K + +RI K+Q++ K E
Sbjct: 116 VEG----SVDPVRDKEIVEIE-------LIAKDLESVNRRIEKVQKVAKGGDKKAREEME 164
Query: 171 HLSGI-GVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASE 229
HL+ + + EN + LP + ++++ L KP++ AN ++
Sbjct: 165 HLNALKEILENLEPIRKYADKLPPETLEYAKKTLFLLTV------KPVMYIANISEKDLP 218
Query: 230 E-----QINRLIKEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNER 284
E + R+ + + VV SA E L G SE E
Sbjct: 219 EGEGNPHVERIKEMANQENAPVVVISAELEAQL------------AGLSE--------EE 258
Query: 285 QKKAL--LMIKEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHV 342
QK+ L +KE L++ TG + LL+LI + G
Sbjct: 259 QKEMLEAYGLKEPGLNKVIRTG---------YRLLDLITFFTA----------GEREARA 299
Query: 343 FLMKKGSNPRDLAFKVHTDLGRGFLYA------------INAKTK-----RRIGEDYELQ 385
+ +K+G+ A K+H+D+ RGF+ A AK K R G+DYE+Q
Sbjct: 300 WTVKRGTKAPQAAGKIHSDMERGFIAAEVISYEDLIKAGSWAKAKEQGLIRLEGKDYEIQ 359
Query: 386 FNDII 390
D++
Sbjct: 360 DGDVV 364
>pir||S48582 hypothetical protein - Mycoplasma capricolum (SGC3) (fragment)
>gi|7451193|pir||S77880 probable GTP-binding protein
MC010 - Mycoplasma capricolum (fragment)
>gi|950066|emb|CAA83699.1| (Z33013) similar to GTP-bind.
GTP1/OBG family [Mycoplasma capricolum]
Length = 178
Score = 92.1 bits (225), Expect = 1e-17
Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 10/159 (6%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
+++G+VG PNVGKST F+A T VE ANYPF TI+ NVG+ + ++ EL +
Sbjct: 3 LQVGIVGLPNVGKSTLFNAITNSKVEAANYPFATIEPNVGIV-EVPDYRLDEL-----YK 56
Query: 61 NYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQ 120
+ ++ +A ++ +D+AGL+ GA +G GLGN FL ++R A+ VV D E
Sbjct: 57 IFNSKKRVA-TTIEFVDIAGLIAGASQGEGLGNAFLANIRQTDAICQVVRCF--DDKEIM 113
Query: 121 PTENH-DPIEDIEFLEREIDYWIYGILSKGWDKFAKRIK 158
EN +PI DIE + E+ + K DK + K
Sbjct: 114 HVENSINPIRDIEIINLELMLADQTTVRKRLDKVLPKFK 152
>pir||A81367 probable GTP-binding protein Cj0930 [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6968367|emb|CAB73187.1|
(AL139076) putative GTP-binding protein [Campylobacter
jejuni]
Length = 367
Score = 91.7 bits (224), Expect = 1e-17
Identities = 63/202 (31%), Positives = 106/202 (52%), Gaps = 27/202 (13%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLV-DVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNP 59
+ +G+VG PNVGKST F+A T + + ANYPF TI+ N + + + EL P
Sbjct: 3 LSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAMV-EVPDLRLNELAKIVKP 61
Query: 60 QNYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVV---DVTGKTD 116
+ + ++ +D+AGLV GA +G GLGNKFL ++R ++H+V D T
Sbjct: 62 ERIMHSL------IEFVDIAGLVKGASKGEGLGNKFLSNIRETEVILHIVRCFDEENITH 115
Query: 117 AEGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKL------QRIKLESAIAE 170
EG DP+ D+E + E+ LSK +K K K + ++L +++ +
Sbjct: 116 VEG----GVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAKESLELANSLLD 171
Query: 171 HLS-GIGVT-----ENDVWEAM 186
HL+ G+ + E+++++A+
Sbjct: 172 HLNKGLAASSYPEKESEIYQAL 193
>pir||F70898 probable gtp-binding protein - Mycobacterium tuberculosis (strain
H37RV) >gi|3256023|emb|CAA17228.1| (AL021897)
hypothetical protein Rv1112 [Mycobacterium tuberculosis]
Length = 357
Score = 91.3 bits (223), Expect = 2e-17
Identities = 59/143 (41%), Positives = 75/143 (52%), Gaps = 18/143 (12%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
+ +G+VG PNVGKST F+A T +V ANYPF TI+ N GV P+P+
Sbjct: 3 LSLGIVGLPNVGKSTLFNALTRNNVVAANYPFATIEPNEGVV------------SLPDPR 50
Query: 61 NYEYRE-----GLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKT 115
+ E + PV +D+AGLV GA EG GLGNKFL +R A+ VV V
Sbjct: 51 LDKLAELFGSQRVVPAPVTFVDIAGLVKGASEGAGLGNKFLAHIRECDAICQVVRVFVDD 110
Query: 116 DAEGQPTENHDPIEDIEFLEREI 138
D T DP DIE +E E+
Sbjct: 111 DVT-HVTGRVDPQSDIEVVETEL 132
>pir||D71558 probable GTP binding protein - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3328488|gb|AAC67683.1| (AE001283) GTP
Binding Protein [Chlamydia trachomatis]
Length = 366
Score = 90.9 bits (222), Expect = 2e-17
Identities = 97/377 (25%), Positives = 153/377 (39%), Gaps = 69/377 (18%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
E G+VG PNVGKS F+A T V NYPF TID NVG+ + + + L Q
Sbjct: 7 ECGIVGLPNVGKSGLFNALTGAQVASCNYPFCTIDPNVGIV-PVIDPRLETLARISQSQK 65
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
Y + +K +D+AGLV GA G GLGN+FL +R A+ HVV D
Sbjct: 66 IIYAD------MKFVDIAGLVKGAASGAGLGNRFLSHIRETHAIAHVVRCFDNDDIT-HV 118
Query: 122 TENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIK-----LQRIKLESAIAEHLSGIG 176
+ DP EDI + E+ + + +K K+ K Q + L + +HL
Sbjct: 119 SGKIDPEEDIAVINLELVLADFSSATSVREKLGKQAKGKKDIGQLLPLLDRVVDHLES-- 176
Query: 177 VTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLI 236
G P S E+ + KPM+ AN + + + N +
Sbjct: 177 -------------GNPVRTLSLSLEEKVLLKPYPFLTGKPMLYIANIDEDSLTDLDNPYV 223
Query: 237 KEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKV 296
++ +R+ AK E ++ + +++ L + E+
Sbjct: 224 QK------------------VREIAK---------REEANVVPICVKLEEEILSLPLEER 256
Query: 297 LDRFGSTGVQEV-INKAV---FELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPR 352
D S G+QE +N+ V + L LI + G + + KG+
Sbjct: 257 QDFLHSLGLQESGLNRLVASAYHTLGLISYFTT----------GPQETRAWTISKGATAA 306
Query: 353 DLAFKVHTDLGRGFLYA 369
+ A ++H+D+ RGF+ A
Sbjct: 307 EAAGEIHSDIQRGFIRA 323
>gb|AAF73549.1| (AE002304) GTP-binding protein, YchF family [Chlamydia muridarum]
Length = 364
Score = 90.1 bits (220), Expect = 4e-17
Identities = 98/381 (25%), Positives = 150/381 (38%), Gaps = 77/381 (20%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
E G+VG PNVGKS F+A T V NYPF TID NVG+ + + + L
Sbjct: 5 ECGIVGLPNVGKSGLFNALTGAQVASCNYPFCTIDPNVGIV-PVVDSRLEILARISQSHK 63
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
Y + +K +D+AGLV GA G GLGN+FL +R A+ HVV D
Sbjct: 64 IIYAD------MKFVDIAGLVKGAASGAGLGNRFLSHIRETHAIAHVVRCFDNDDVT-HV 116
Query: 122 TENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIK-----LQRIKLESAIAEHLSGIG 176
+ DP EDI + E+ + + DK +K+ K Q I + + EHL
Sbjct: 117 SGKIDPEEDIAVINLELILADFSSATSVRDKLSKQAKGKKDIGQLIPILDRVIEHLES-- 174
Query: 177 VTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLI 236
G P S E+ KPM+ AN + + + N +
Sbjct: 175 -------------GNPVRTLSLSSEEGSLLKPYPFLTGKPMLYIANIDEDSLTDLDNPYV 221
Query: 237 KE----GEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMI 292
++ ++ G VVP E ++ L +
Sbjct: 222 QKVRRIAQQEGANVVPICVKLE-------------------------------EEILSLP 250
Query: 293 KEKVLDRFGSTGVQEV-INKAV---FELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKG 348
E+ D S G+QE +N+ V ++ L LI + G + + KG
Sbjct: 251 PEERQDFLHSLGLQESGLNRLVASAYQTLGLISYFTT----------GPQETRAWTISKG 300
Query: 349 SNPRDLAFKVHTDLGRGFLYA 369
+ + A ++H+D+ +GF+ A
Sbjct: 301 ATAAEAAGEIHSDIQKGFIRA 321
>pir||S75088 probable GTP-binding protein sll0245 - Synechocystis sp. (strain
PCC 6803) >gi|1653033|dbj|BAA17950.1| (D90910)
hypothetical protein [Synechocystis sp.]
Length = 363
Score = 90.1 bits (220), Expect = 4e-17
Identities = 62/176 (35%), Positives = 94/176 (53%), Gaps = 14/176 (7%)
Query: 1 MEIGVVGKPNVGKSTFFSAATL-VDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNP 59
+ G+VG PNVGKST F+A E AN+PF TI+ NVGV P LG
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSV----PDDRLG----- 52
Query: 60 QNYEYREGLALIPVKM--IDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDA 117
+ E + + ++P +M +D+AGLV GA +G GLGN+FL ++R A++HVV D
Sbjct: 53 KLAEISQSVKVVPTRMEFVDIAGLVAGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDI 112
Query: 118 EGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLES-AIAEHL 172
+ + DP+ D+E ++ E+ + K ++ K+ + + LE AI E L
Sbjct: 113 I-HVSGSVDPVRDVEVIDLELVLADLAQVEKRLERSRKQARGNKDLLEEVAILERL 167
>sp|P75088|Y024_MYCPN PROBABLE GTP-BINDING PROTEIN MG024 HOMOLOG (B01_ORF362)
>gi|2146318|pir||S73454 probable GTP-binding protein
yyaF - Mycoplasma pneumoniae (strain ATCC 29342)
>gi|1673787|gb|AAB95776.1| (AE000015) similar to GTPases
[Mycoplasma pneumoniae]
Length = 362
Score = 90.1 bits (220), Expect = 4e-17
Identities = 56/140 (40%), Positives = 75/140 (53%), Gaps = 12/140 (8%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELG-CKPNP 59
+ G+VG PNVGKST FSA T + VEIANYPF TI+ N G+ I E K KP+
Sbjct: 2 LSAGIVGLPNVGKSTLFSAITNLQVEIANYPFATIEPNAGIVNVIDERLDKLASLIKPDK 61
Query: 60 QNYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEG 119
+ + +D+AGLV GA +G GLGN+FL ++R + HVV D +
Sbjct: 62 VTH--------TTFRFVDIAGLVKGASKGEGLGNQFLANIREVDLICHVVRC--YEDKKI 111
Query: 120 QPTENH-DPIEDIEFLEREI 138
N DP+ D E + E+
Sbjct: 112 VHVNNQVDPVFDFEIIVNEL 131
>pir||C71364 conserved hypothetical GTP-binding protein TP0124 - syphilis
spirochete >gi|3322387|gb|AAC65113.1| (AE001197)
conserved hypothetical GTP-binding protein [Treponema
pallidum]
Length = 368
Score = 90.1 bits (220), Expect = 4e-17
Identities = 55/135 (40%), Positives = 73/135 (53%), Gaps = 8/135 (5%)
Query: 4 GVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNYE 63
G++G PNVGKST FSA T VE ANYPF TI+ NVG+ + + + L P+
Sbjct: 6 GIIGLPNVGKSTIFSALTANVVEAANYPFCTIEPNVGMV-TVPDVRLEALAGHFRPKKTV 64
Query: 64 YREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQPTE 123
Y ++ +D+AGLV GA +G GLGN+FL +R L HVV TD
Sbjct: 65 YAS------IECVDIAGLVKGASQGEGLGNRFLAHVREVGVLAHVVRCFEHTDIV-HVHN 117
Query: 124 NHDPIEDIEFLEREI 138
DP+ DIE + E+
Sbjct: 118 KVDPLSDIETVHIEL 132
>pir||C70129 probable GTP-binding protein BB0235 - Lyme disease spirochete
>gi|2688121|gb|AAC66614.1| (AE001133) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 368
Score = 89.7 bits (219), Expect = 5e-17
Identities = 51/111 (45%), Positives = 66/111 (58%), Gaps = 11/111 (9%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
+ G+VG PNVGKST FS+ T +VEIANYPF TI+ N+G+ E K C +
Sbjct: 3 LNAGIVGLPNVGKSTLFSSLTSSNVEIANYPFCTIEPNIGIVEIPDERLLKISECIIPRK 62
Query: 61 NYEYREGLALIPVKM--IDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVV 109
+IP M +D+AGLV GA G GLGNKFL ++R S ++HVV
Sbjct: 63 ---------IIPAVMEFVDIAGLVKGASTGEGLGNKFLANIREVSLIVHVV 104
>pir||B82532 GTP-binding protein XF2641 [imported] - Xylella fastidiosa (strain
9a5c) >gi|9107872|gb|AAF85438.1|AE004071_6 (AE004071)
GTP-binding protein [Xylella fastidiosa]
Length = 363
Score = 89.3 bits (218), Expect = 7e-17
Identities = 57/149 (38%), Positives = 78/149 (52%), Gaps = 30/149 (20%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
++ G+VG PNVGKST F+A T + AN+PF TI+ NVGV + + +L PQ
Sbjct: 3 IKCGIVGLPNVGKSTLFNALTKAGIAAANFPFCTIEPNVGVV-PVPDPRLNQLAEIVKPQ 61
Query: 61 NYEYREGLALIP--VKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVV--------- 109
L+P ++ +D+AGLV GA G GLGNKFL +R A+ HVV
Sbjct: 62 K--------LLPTVIEFVDIAGLVAGAASGEGLGNKFLAHIREVDAIAHVVRCFEHGQII 113
Query: 110 DVTGKTDAEGQPTENHDPIEDIEFLEREI 138
V GK DP+ DIE ++ E+
Sbjct: 114 HVAGKV----------DPLADIEIIDTEL 132
>emb|CAB39810.1| (AL049491) putative GTP-binding protein [Mycobacterium leprae]
Length = 356
Score = 88.9 bits (217), Expect = 9e-17
Identities = 87/284 (30%), Positives = 130/284 (45%), Gaps = 37/284 (13%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
+ +G+VG PNVGKST F+A T +V +ANYPF TI+ N GV P+P+
Sbjct: 3 LSLGIVGLPNVGKSTLFNALTRSNVVVANYPFATIEPNEGVV------------SLPDPR 50
Query: 61 NYEYRE---GLALIP--VKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKT 115
+ E ++P V +D+AGLV GA EG GLGNKFL +R A+ VV V
Sbjct: 51 LAKLAELFGSERILPAQVTFVDIAGLVKGASEGAGLGNKFLAHIRECDAICQVVRVFSGD 110
Query: 116 DAEGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQR----IKLESAIAEH 171
D T DP DI ++ E+ L + + K + + I + A+
Sbjct: 111 DIT-HVTGRVDPQSDIGIIDTELILADLDTLERALPRLEKEARNHKERKPIYAAAINAQQ 169
Query: 172 LSGIGVT---ENDVWEAMHRLG-LPSDPTLW---SQEDLL---AFASEIRRINKPMIIAA 221
+ +G T A+ L L + P L+ + E +L A+ +E+R++ P A
Sbjct: 170 VLNVGTTLFAAGVDGSALRELNLLTNKPFLYVFNADEAVLTAAAWVAELRQLVAP--ADA 227
Query: 222 NKADAASEEQINRLIKEGEKRGYIVVPTSAAAELTLRKAAKAGF 265
DAA E ++ L E ++ + E L A+AGF
Sbjct: 228 VFLDAAIEAELAELDDESAAE---LLESIGQTERGLDALARAGF 268
>gb|AAF65513.1| (AF108896) GTP-binding protein [Capsicum annuum]
Length = 394
Score = 88.5 bits (216), Expect = 1e-16
Identities = 75/265 (28%), Positives = 120/265 (44%), Gaps = 27/265 (10%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
++IG+VG PNVGKST F+ T + + N+PF TI+ N + E E C Q
Sbjct: 25 LKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIEPNEARVHVPDER--FEWLC----Q 78
Query: 61 NYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQ 120
Y+ + +A +++ D+AGLV GAH G+GLGN FL +R + HV+ D
Sbjct: 79 LYKPKSEVAAF-LEIHDIAGLVRGAHAGQGLGNSFLSHIRAVDGIFHVLRAFEDPDII-H 136
Query: 121 PTENHDPIEDIEFLEREI---DYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGV 177
+ DP+ D+E + E+ D + +K KR +++K+E + +
Sbjct: 137 VDDTVDPVRDLEVISEELRLKDIEFIERRIEDLEKSMKRSNDKQLKIEHELCLRVKASLE 196
Query: 178 TENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIK 237
DV RLG W D+ + KP++ N + + + N+ +
Sbjct: 197 EGKDV-----RLG------DWKAADIELLNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLP 245
Query: 238 E-----GEKRGYIVVPTSAAAELTL 257
+ E G I++P SAA E L
Sbjct: 246 KIHAWVQEHGGDIIIPFSAAVERNL 270
>pir||F75167 GTP-binding protein PAB2026 - Pyrococcus abyssi (strain Orsay)
>gi|5457931|emb|CAB49421.1| (AJ248284) GTP-BINDING
PROTEIN [Pyrococcus abyssi]
Length = 387
Score = 87.0 bits (212), Expect = 3e-16
Identities = 101/402 (25%), Positives = 169/402 (41%), Gaps = 107/402 (26%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
+I +VG PNVGKS A T VDVE A+YPFTT + P P
Sbjct: 83 QIVLVGLPNVGKSELLRALTGVDVESADYPFTTTE--------------------PIPAM 122
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
Y++ + +++++V GL+ GA G+G+G + L +R A A+ V+D+
Sbjct: 123 MNYKD----VQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDL---------- 168
Query: 122 TENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTEND 181
+ DPI+ ++ L RE + + +K RI+++R + + I N+
Sbjct: 169 --SEDPIKQMKILLREFERAGIKV-----NKRRPRIEIRRTPSGGIVINGIENIKGDINE 221
Query: 182 VWEAMHRLGLPS-DPTLWSQEDLLAFASEIRR--INKPMIIAANKADA-ASEEQINRLIK 237
V + + + S + T+ L FA + + K II ANK DA S++ +L+K
Sbjct: 222 VMKMLREEKIHSAEITVREPVTLEDFADALDESLVWKKAIIIANKGDAPGSKDNYEKLVK 281
Query: 238 EGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVL 297
+R + ++P SA + L + K+AL + E +
Sbjct: 282 AYGER-FKIIPVSAKKRINL-------------------------DAVKEALYDVAEIIR 315
Query: 298 DRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFK 357
S G + P YP +K+GS D+A +
Sbjct: 316 VFTKSPGEE--------------PAYP-----------------PIALKRGSTVLDVAER 344
Query: 358 VHTDLGRGFLYA-INAKTKR----RIGEDYELQFNDIIKIVA 394
+H DL + F YA + K+ + R+G D+ L+ DI++I A
Sbjct: 345 IHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDGDIVEIHA 386
>pir||A72280 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981794|gb|AAD36315.1|AE001779_17 (AE001779)
conserved hypothetical protein [Thermotoga maritima]
Length = 357
Score = 87.0 bits (212), Expect = 3e-16
Identities = 98/371 (26%), Positives = 158/371 (42%), Gaps = 66/371 (17%)
Query: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHP---CKELGCKPNP 59
+G+VG PN GKS+FF+ T V ++PF TI+ NVG+ E K G K
Sbjct: 1 MGIVGLPNAGKSSFFNFLTDNSVPAESFPFCTIEPNVGILVVPDERIEILAKNEGSKKVV 60
Query: 60 QNYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEG 119
+ V+++D+AGLV GA +G GLGN+FLD + + HVV + +
Sbjct: 61 HPF----------VEVVDIAGLVKGASKGEGLGNQFLDHISKVDVIAHVVRLF-EDGRVS 109
Query: 120 QPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTE 179
P +N DP DIE +E E+ I L + KR+K+ R + A E + + +
Sbjct: 110 HPYQNVDPKRDIEIVETEL---ILKDLETVQKRLEKRMKVARTGDKEAKRE----VELLQ 162
Query: 180 NDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAAN--KADAASEEQINRLIK 237
N + E + + S + + S +KP I+ N + D + I ++K
Sbjct: 163 N-LREFLSQGKKASKFPRHDRFEEEVIESLFLLTDKPQILVFNVDELDEEKRKLIEEIVK 221
Query: 238 EGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVL 297
E ++ YI++ EL +A E+ + D + EKVL
Sbjct: 222 EKDEE-YIIINVKLEEELKFLPEEEAEVF-----RREYNLFGDKRKE-------FFEKVL 268
Query: 298 DRFGSTGVQEVINKAVFELLNLIP-VYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAF 356
+LLNLI + Q+E + + +KKGS + A
Sbjct: 269 -----------------KLLNLIRFLTATQNEAR-----------SWTIKKGSTAYEAAG 300
Query: 357 KVHTDLGRGFL 367
+H+D+ +GF+
Sbjct: 301 LIHSDIQKGFI 311
>sp|P31216|YCHF_ECOLI PROBABLE GTP-BINDING PROTEIN IN TREA-PTH INTERGENIC REGION (ORF-3)
>gi|7451194|pir||H64866 probable GTP-binding protein
ychF - Escherichia coli >gi|1787454|gb|AAC74287.1|
(AE000219) putative GTP-binding protein [Escherichia
coli K12] >gi|4062787|dbj|BAA36061.1| (D90756) Probable
GTP-binding protein in pth 3'region (orf-3) .
[Escherichia coli]
Length = 363
Score = 86.2 bits (210), Expect = 6e-16
Identities = 95/371 (25%), Positives = 152/371 (40%), Gaps = 62/371 (16%)
Query: 4 GVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNYE 63
G+VG PNVGKST F+A T +E AN+PF TI+ N GV + + +L PQ
Sbjct: 6 GIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVV-PMPDPRLDQLAEIVKPQR-- 62
Query: 64 YREGLALIPVKM--IDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
+P M +D+AGLV GA +G GLGN+FL ++R A+ HVV + D
Sbjct: 63 ------TLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCF-ENDNIIHV 115
Query: 122 TENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIK--LQRIKLESAIAEHLSGIGVTE 179
+ +P +DIE + E+ + + K+ K + K E A+ E
Sbjct: 116 SGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKAELAVLE--------- 166
Query: 180 NDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIA-ANKADAASEEQINRLIKE 238
+ G+ L ++E + M IA N+ + ++++ +
Sbjct: 167 -KCLPQLENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREI 225
Query: 239 GEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLD 298
K G +VVP AA E + + L D + L ++E L+
Sbjct: 226 AAKEGSVVVPVCAAVEADIAE------------------LDDEERDEFMQELGLEEPGLN 267
Query: 299 RFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKV 358
R + +A ++LLNL + G + + G+ A K+
Sbjct: 268 R---------VIRAGYKLLNLQTYFTA----------GVKEVRAWTIPVGATAPQAAGKI 308
Query: 359 HTDLGRGFLYA 369
HTD +GF+ A
Sbjct: 309 HTDFEKGFIRA 319
>pir||H71047 probable developmentally regulated GTP-binding protein - Pyrococcus
horikoshii >gi|3258101|dbj|BAA30784.1| (AP000006) 387aa
long hypothetical developmentally regulated GTP-binding
protein [Pyrococcus horikoshii]
Length = 387
Score = 85.4 bits (208), Expect = 1e-15
Identities = 106/406 (26%), Positives = 169/406 (41%), Gaps = 115/406 (28%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
+I +VG PNVGKS A T VDVE A+YPFTT + P P
Sbjct: 83 QIVLVGLPNVGKSELLRALTGVDVESADYPFTTTE--------------------PVPAM 122
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
Y++ + +++++V GL+ GA G+G+G + L +R A A+ V+D+
Sbjct: 123 MNYKD----VQIQLVEVPGLLEGAALGKGMGPQLLAVIRNADAIAIVIDL---------- 168
Query: 122 TENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTEND 181
+ DPI+ +E L RE + + K KR I+ + ++G + D
Sbjct: 169 --SEDPIKQMEILLREFE--------RAGIKVNKRRPRVEIRKTPSGGIVINGAENIKGD 218
Query: 182 VWEAMHRLG----LPSDPTLWSQEDLLAFASEI--RRINKPMIIAANKADA-ASEEQINR 234
+ E M L ++ T+ L FA + + K II ANK D+ S+E ++
Sbjct: 219 LSEVMRMLREEKIHSAEITVKEPVTLEEFADALDDSLVWKKAIIIANKGDSPGSKENYHK 278
Query: 235 LI-KEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIK 293
LI K GEK + +VP SA + L E K+A+ +
Sbjct: 279 LINKYGEK--FKIVPVSAKKRINL-------------------------EAVKEAIYDVA 311
Query: 294 EKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRD 353
E + S G + P YP +K+G+ D
Sbjct: 312 EIIRVFTKSPGEE--------------PAYP-----------------PIALKRGATVMD 340
Query: 354 LAFKVHTDLGRGFLYA-INAKTKR----RIGEDYELQFNDIIKIVA 394
+A ++H DL + F YA + K+ + R+G D+ L+ DI++I A
Sbjct: 341 VAERIHKDLVKNFRYARVWGKSVKFPGQRVGPDHVLEDGDIVEIHA 386
>pir||A83061 conserved hypothetical protein PA4673 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950929|gb|AAG08060.1|AE004881_3 (AE004881)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 366
Score = 84.7 bits (206), Expect = 2e-15
Identities = 100/379 (26%), Positives = 152/379 (39%), Gaps = 75/379 (19%)
Query: 4 GVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNYE 63
G+VG PNVGKST F+A T + N+PF TI+ N G+ + + L P+
Sbjct: 6 GIVGLPNVGKSTLFNALTKSGIAAENFPFCTIEPNSGIV-PMPDARLNALAEIVKPER-- 62
Query: 64 YREGLALIPVKM--IDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
++P M +D+AGLV GA +G GLGNKFL ++R A+ HVV + D
Sbjct: 63 ------VLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCF-EDDNVIHV 115
Query: 122 TENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIK-------LQRIKLESAIAEHLSG 174
+ + DP DIE ++ E+ + K K A+ K Q+ LE I G
Sbjct: 116 SNSVDPKRDIEIIDLELIFADLDSCEKQLQKVARNAKGGDKEALAQKALLEKLIPHFTEG 175
Query: 175 IGVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEE--QI 232
+ LG E+ S +KP++ AN A+ E +
Sbjct: 176 -----KPARSLLKNLG---------DEEKRLVRSFHLLTSKPVMYIANVAEDGFENNPHL 221
Query: 233 NRLIKEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMI 292
+ + E+ G +VVP E +E L+D E
Sbjct: 222 DVVKAIAEEEGAVVVPVCNKIE------------------AEIAELEDGEE--------- 254
Query: 293 KEKVLDRFG--STGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSN 350
K+ L+ G G+ VI +A + LLNL + G + ++ G+
Sbjct: 255 KDMFLESLGLEEPGLNRVI-RAGYGLLNLQTYFTA----------GVKEVRAWTVRVGAT 303
Query: 351 PRDLAFKVHTDLGRGFLYA 369
A +HTD +GF+ A
Sbjct: 304 APQAAGVIHTDFEKGFIRA 322
>pir||A64591 probable GTP-binding protein gtp1 - Helicobacter pylori (strain
26695) >gi|2313689|gb|AAD07637.1| (AE000571) GTP-binding
protein (gtp1) [Helicobacter pylori 26695]
Length = 366
Score = 83.9 bits (204), Expect = 3e-15
Identities = 112/418 (26%), Positives = 179/418 (42%), Gaps = 88/418 (21%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLV-DVEIANYPFTTIDANVGVTYAIAEHPCKELGC---- 55
+ +G+VG PNVGKS+ F+A T + + ANYPF TI+ N AI P + L
Sbjct: 3 LSVGIVGLPNVGKSSTFNALTKTQNAQSANYPFCTIEPNK----AIVNVPDRRLDALAQI 58
Query: 56 -KPNPQNYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGK 114
KP E + V+ +D+AGL+ GA +G GLGN+FL +++ ++ VV +
Sbjct: 59 VKP--------ERILHSVVEFVDIAGLIKGASKGEGLGNQFLANIKECEVILQVVRCF-E 109
Query: 115 TDAEGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSG 174
D + DP+ DIE +E E+ L K D+ K +K S A++L
Sbjct: 110 DDNITHVNDKIDPLNDIETIELELILADIAALDKRIDRLQKALK------SSKDAKNLLE 163
Query: 175 IGVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRI-NKPMIIAANKADAASEEQIN 233
++ + + L L + E L E+R + +K MI AN EE +N
Sbjct: 164 CALS---LKTHLEELKPAKTFPLNTSEAFLELDKELRFLSHKKMIYVAN----VGEEDLN 216
Query: 234 RLIKEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIK 293
L + +K ++ AK +SEF L + +++ + M
Sbjct: 217 ALNEHAKK---------------VKNHAK-------EQNSEFVAL--CAKLEEEMVSMSG 252
Query: 294 EKVLDRFGSTGVQEV-INKAV---FELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGS 349
++V + S GV+E + K + F+ L LI + G + +KKGS
Sbjct: 253 DEVKEFLQSLGVEESGLEKTIRLSFKELGLINYFTA----------GVKEVRSWTIKKGS 302
Query: 350 NPRDLAFKVHTDLGRGFLYA--------------INAKTK---RRIGEDYELQFNDII 390
+ A +H D +GF+ A AK K R G+DY +Q D++
Sbjct: 303 SAPVAAGVIHKDFEKGFIRAETISYDDFIAYKGEAGAKEKGALRIEGKDYIVQDGDVL 360
>gb|AAF46520.1| (AE003448) CG1354 gene product [Drosophila melanogaster]
Length = 399
Score = 83.5 bits (203), Expect = 4e-15
Identities = 108/423 (25%), Positives = 171/423 (39%), Gaps = 94/423 (22%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQ 60
+ IG+VG PNVGKSTFF+ T N+PF TI N P P
Sbjct: 22 LRIGIVGVPNVGKSTFFNVLTQSAAPAENFPFCTIKPNENKRRV------------PVPD 69
Query: 61 N-----YEYREGLALIP--VKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHV---VD 110
EY + +++P + ++D+AGLV GA EG+GLGN FL + A+ H+ +
Sbjct: 70 ERFDYLVEYHKPASVVPAYLNVVDIAGLVKGAAEGQGLGNDFLSHISACDAIFHLCRAFE 129
Query: 111 VTGKTDAEGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAE 170
T EG+ DP+ D+E + E+ L K DK K + R + E
Sbjct: 130 DPDVTHVEGEV----DPVRDLEIISEELRLKDEENLLKNLDKLEKVV--ARGGDKKLKPE 183
Query: 171 HLSGIGVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEE 230
+ S + + + + + H L W+ D+ A + +KP+I N +D
Sbjct: 184 YDSMLKIKDILIDQKRH-LRFED----WNAHDIEALNKYLFLTSKPVIYLVNLSDKDFIR 238
Query: 231 QINR---LIKEGEKR---GYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNER 284
+ N+ IKE + G +++P S A E L + KD ER
Sbjct: 239 KKNKWLPKIKEWIDKNDPGALLIPFSGAFEHQLTE-------------------KDELER 279
Query: 285 QKKALLMIKEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFL 344
+ + +L++ TG + + +L P DE K +
Sbjct: 280 KAYETETKCKSMLEKIVVTGYKGL------QLEYFFTAGP--DEVK-----------AWT 320
Query: 345 MKKGSNPRDLAFKVHTDLGRGFLYA--------------INAKTK---RRIGEDYELQFN 387
++KG+ A ++HTD +GF+ A NAK R+ G +Y ++
Sbjct: 321 IQKGTKAPQAAGRIHTDFEKGFIMAEVMHFEDFKAEGSEANAKAAGKYRQQGRNYTVEDG 380
Query: 388 DII 390
DII
Sbjct: 381 DII 383
>gb|AAA67557.1| (U02423) 35 kDa GTP-binding protein [Escherichia coli]
>gi|1093597|prf||2104267A ORF [Escherichia coli]
Length = 269
Score = 83.5 bits (203), Expect = 4e-15
Identities = 53/137 (38%), Positives = 75/137 (54%), Gaps = 12/137 (8%)
Query: 4 GVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNYE 63
G+VG PNVGKST F+A T +E AN+PF TI+ N GV + + +L PQ
Sbjct: 6 GIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVV-PMPDPRLDQLAEIVKPQR-- 62
Query: 64 YREGLALIPVKM--IDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
+P M +D+AGLV GA +G GLGN+FL ++R A+ HVV + D
Sbjct: 63 ------TLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCF-ENDNIIHV 115
Query: 122 TENHDPIEDIEFLEREI 138
+ +P +DIE + E+
Sbjct: 116 SGKVNPADDIEVINTEL 132
>gb|AAF02843.1|AC009894_14 (AC009894) Similar to GTP-binding protein [Arabidopsis thaliana]
Length = 419
Score = 83.5 bits (203), Expect = 4e-15
Identities = 77/267 (28%), Positives = 126/267 (46%), Gaps = 30/267 (11%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNP 59
++ G+VG PNVGKST F+A + AN+PF TI+ NVG+ A+ + + L
Sbjct: 54 LKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV-AVPDSRLQVLSKLSGS 112
Query: 60 QNYEYREGLALIP--VKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDA 117
Q +P ++ +D+AGLV GA +G GLGNKFL +R +++ VV D
Sbjct: 113 QK--------TVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI 164
Query: 118 EGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRI-KLQRIKLESAIAEHLSGIG 176
DP DI+ + E+ + D+ KRI +L++ K + + ++ +
Sbjct: 165 I-HVNGKVDPKSDIDVINLELIFC-------DLDQIGKRIERLKKGKAKDSQSKEEAEKS 216
Query: 177 VTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADA-ASEEQINRL 235
E + EA+ G P+ S ++ KPMI AN A+ +E + N
Sbjct: 217 ALER-IQEALLE-GKPARSVALSDLEMEVVKHLCLLTMKPMIYVANVAETDLAEPEKNAY 274
Query: 236 IKEGE------KRGYIVVPTSAAAELT 256
++E + + G++VV +ELT
Sbjct: 275 VEEVKGLSSDLQSGHVVVSAQVESELT 301
>pir||E71920 hypothetical protein jhp0516 - Helicobacter pylori (strain J99)
>gi|4155073|gb|AAD06109.1| (AE001485) putative
[Helicobacter pylori J99]
Length = 366
Score = 83.1 bits (202), Expect = 5e-15
Identities = 112/418 (26%), Positives = 178/418 (41%), Gaps = 88/418 (21%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLV-DVEIANYPFTTIDANVGVTYAIAEHPCKELGC---- 55
+ +G+VG PNVGKS+ F+A T + + ANYPF TI+ N AI P + L
Sbjct: 3 LSVGIVGLPNVGKSSTFNALTKTQNAQSANYPFCTIEPNK----AIVNVPDRRLDALAQI 58
Query: 56 -KPNPQNYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGK 114
KP E + V+ +D+AGL+ GA +G GLGN+FL +++ ++ VV +
Sbjct: 59 VKP--------ERILHSVVEFVDIAGLIKGASKGEGLGNQFLANIKECEVILQVVRCF-E 109
Query: 115 TDAEGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSG 174
D + DP+ DIE +E E+ L K D+ K +K S A++L
Sbjct: 110 DDNITHVNDKIDPLNDIETIELELILADIATLDKRIDRLQKALK------SSKDAKNLLE 163
Query: 175 IGVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRI-NKPMIIAANKADAASEEQIN 233
++ + + L L + E L E+R + +K MI AN EE +N
Sbjct: 164 CALS---LKTHLEELKPAKTFPLNTSEAFLELDKELRFLSHKKMIYVAN----VGEEDLN 216
Query: 234 RLIKEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIK 293
L + +K V A + +SEF L + +++ + M
Sbjct: 217 ILNEHAKK-----VENHAKVQ-----------------NSEFVAL--CAKLEEEMVSMSG 252
Query: 294 EKVLDRFGSTGVQEV-INKAV---FELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGS 349
++V + S GV+E + K + F+ L LI + G + +KKGS
Sbjct: 253 DEVKEFLQSLGVEESGLEKTIRLSFKELGLINYFTA----------GVKEVRSWTIKKGS 302
Query: 350 NPRDLAFKVHTDLGRGFLYA--------------INAKTK---RRIGEDYELQFNDII 390
+ A +H D +GF+ A AK K R G+DY +Q D++
Sbjct: 303 SAPVAAGVIHKDFEKGFIRAETISYDDFIAYKGEAGAKEKGALRIEGKDYIVQDGDVL 360
>gb|AAD25745.1|AC007060_3 (AC007060) Similar to WO8E3.3 gi|3880615 putative GTP-binding
protein from C. elegans cosmid gb|Z92773. EST
gb|AA597331 comes from this gene. [Arabidopsis thaliana]
Length = 394
Score = 81.5 bits (198), Expect = 2e-14
Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDAN---VGVTYAIAEHPCKELGCKP 57
++IG+VG PNVGKST F+ T + + N+PF TI+ N V + + C
Sbjct: 25 LKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIEPNEARVNIPDERFDWLC------- 77
Query: 58 NPQNYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDA 117
Q Y+ + + +++ D+AGLV GAHEG+GLGN FL +R + HV+ D
Sbjct: 78 --QTYKPKSEIPAF-LEIHDIAGLVRGAHEGQGLGNNFLSHIRAVDGIFHVLRAFEDADI 134
Query: 118 EGQPTENHDPIEDIEFLEREI---DYWIYGILSKGWDKFAKRIKLQRIKLE 165
+ DP+ D+E + E+ D G +K KR +++K+E
Sbjct: 135 I-HVDDIVDPVRDLETITEELRLKDIEFVGKKIDDVEKSMKRSNDKQLKIE 184
>emb|CAA82332.1| (Z29089) putative ATP/GTP binding protein Ylf2p [Saccharomyces
cerevisiae]
Length = 405
Score = 78.4 bits (190), Expect = 1e-13
Identities = 103/436 (23%), Positives = 179/436 (40%), Gaps = 112/436 (25%)
Query: 4 GVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNY 62
G+VG NVGKSTFF A T + ANYPF TIDA C ++ P +
Sbjct: 20 GIVGLANVGKSTFFQAITNSKLGNPANYPFATIDAE-----------CAKVNIPTVPLSN 68
Query: 63 EYR--EGLALIP--VKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTD-- 116
R + +P + + D+AGL GA +G GLGNKFL+D+R + VV K D
Sbjct: 69 LLRIYQSAKCVPGTLTIYDIAGLTRGASQGHGLGNKFLNDIRHVEGIFQVVRGFLKEDIT 128
Query: 117 -AEGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKL--------QRIKLES- 166
EG N DP+ D+ ++ E+ + L ++ +K++++ Q +K+E+
Sbjct: 129 HIEG----NVDPVRDLSVVQDELIFKDLEFLENIRERLSKKMRMVSKNSKEHQEMKIETE 184
Query: 167 ---AIAEHLSGIGVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANK 223
A+ EHL + + W+ +++ +KP +I N
Sbjct: 185 LLDALEEHL-------------FNGKKIRHFKDHWNLDEVKILNKHNFLTSKPTLILLNV 231
Query: 224 ADAASEEQINRLIKE----------GEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSS 273
+ N+ ++ G+K +++ ++L K + + D
Sbjct: 232 SPQDYVRNENKFVRNIIEWINEFSPGDK--FLLFSAEFESQLMECKGIASEYFD------ 283
Query: 274 EFKILKDMNERQKKALLMIKEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTD 333
KI +D N ++ + I + +L+ + +LLNLI +
Sbjct: 284 --KIKEDTNVSDQQLVSAIPQIILE--------------MRKLLNLISFFTC-------- 319
Query: 334 QFGNVLPHVFLMKKGSNPRDLAFKVHTDLGRGFLYA--------------IN---AKTK- 375
G H + +++G+ ++ A +H+DL F+ A +N K+K
Sbjct: 320 --GPQAVHQWNIREGTTAQEAAGVIHSDLRETFISADVIKYDDLKKMEPPLNESLLKSKG 377
Query: 376 --RRIGEDYELQFNDI 389
+R G+ Y +Q NDI
Sbjct: 378 LIKRAGKQYIMQDNDI 393
>pir||F70680 probable obg - Mycobacterium tuberculosis (strain H37RV)
>gi|1666144|emb|CAB03779.1| (Z81451) obg [Mycobacterium
tuberculosis]
Length = 479
Score = 78.4 bits (190), Expect = 1e-13
Identities = 51/137 (37%), Positives = 69/137 (50%), Gaps = 31/137 (22%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
++G+VG P+ GKS+ SA + +IA+YPFTT+ N+GV A EH
Sbjct: 161 DVGLVGFPSAGKSSLVSAISAAKPKIADYPFTTLVPNLGVVSA-GEH------------- 206
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
+ DV GL+PGA GRGLG FL + + L+HVVD A +P
Sbjct: 207 ----------AFTVADVPGLIPGASRGRGLGLDFLRHIERCAVLVHVVDC-----ATAEP 251
Query: 122 TENHDPIEDIEFLEREI 138
DPI DI+ LE E+
Sbjct: 252 --GRDPISDIDALETEL 266
>gb|AAD29269.1|AF107096_1 (AF107096) putative GTP-binding protein [Rhodobacter sphaeroides]
Length = 369
Score = 77.6 bits (188), Expect = 2e-13
Identities = 105/406 (25%), Positives = 169/406 (40%), Gaps = 69/406 (16%)
Query: 3 IGVVGKPNVGKSTFFSAAT-LVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
+G+VG PNVG+ F+A T + AN+PF TI+ NVG A+ + + L
Sbjct: 9 MGIVGLPNVGQIHVFNALTRTAAAQAANFPFCTIEPNVGEV-AVPDARLEILA------- 60
Query: 62 YEYREGLALIPVKM--IDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVV---DVTGKTD 116
E +IP +M +D+AGLV GA +G GLGN+FL ++R A+ HV+ + T
Sbjct: 61 -EIAGSKQIIPTRMTFVDIAGLVRGASKGEGLGNQFLANIRECDAIAHVLRCFEDGDITH 119
Query: 117 AEGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIG 176
EG+ DP+ D E +E E+ + + A+ KL+ E+A + L +
Sbjct: 120 VEGR----IDPVADAETIETELMLADMDSIERRLANLAR--KLKGGDKEAADQDRLLRVA 173
Query: 177 VTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAAS---EEQIN 233
+ A G P+ S +D A+ +KP++ N +A++ Q
Sbjct: 174 M-------AALEAGRPARSVTVSADDQRAWRMLQLLTSKPVLYVCNVEEASAAKGNSQSA 226
Query: 234 RLIKEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIK 293
R+ + +G V SA E + + +P L++M ++
Sbjct: 227 RVAEMARAQGAATVVISARIEEEIAQ---------LPPEEAGMFLEEMG---------LE 268
Query: 294 EKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDE---------NKLTDQFGNVLPHVFL 344
E LDR + +A +ELL L + V + L Q V+ F
Sbjct: 269 EAGLDR---------LIRAGYELLGLQTYFTVGPKEARAWTITRGMLAPQAAGVIHGDF- 318
Query: 345 MKKGSNPRDLAFKVHTDLGRGFLYAINAKTKRRIGEDYELQFNDII 390
+KG + GRG A A R G+ YE+Q D++
Sbjct: 319 -EKGFIRAETVAYADYVAGRGEAGAKEAGKFRVEGKTYEVQDGDVL 363
>gi|6321773 GTP-binding protein and glycogen phosphorylase (weak); Ylf2p
[Saccharomyces cerevisiae]
>gi|732143|sp|P38746|YLF2_YEAST PUTATIVE GTP-BINDING
PROTEIN YLF2 >gi|626808|pir||S46828 probable GTP-binding
protein YLF1 - yeast (Saccharomyces cerevisiae)
>gi|2289884|gb|AAB65067.1| (U11582) No definition line
found [Saccharomyces cerevisiae]
Length = 405
Score = 76.1 bits (184), Expect = 7e-13
Identities = 62/189 (32%), Positives = 92/189 (47%), Gaps = 35/189 (18%)
Query: 4 GVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNY 62
G+VG NVGKSTFF A T + ANYPF TIDA C ++ P +
Sbjct: 20 GIVGLANVGKSTFFQAITNSKLGNPANYPFATIDAE-----------CAKVNIPSVPLSN 68
Query: 63 EYR--EGLALIP--VKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTD-- 116
R + +P + + D+AGL GA +G GLGNKFL+D+R + VV K D
Sbjct: 69 LLRIYQSAKCVPGTLTIYDIAGLTRGASQGHGLGNKFLNDIRHVEGIFQVVRGFLKEDIT 128
Query: 117 -AEGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKL--------QRIKLES- 166
EG N DP+ D+ ++ E+ L ++ +K++++ Q +K+E+
Sbjct: 129 HIEG----NVDPVRDLSVVQDELILKDLEFLENIRERLSKKMRMVSKNSKEHQEMKIETE 184
Query: 167 ---AIAEHL 172
A+ EHL
Sbjct: 185 LLDALEEHL 193
>pir||D81007 GTP-binding protein NMB2086 [imported] - Neisseria meningitidis
(group B strain MD58) >gi|7227348|gb|AAF42403.1|
(AE002558) GTP-binding protein [Neisseria meningitidis
MC58]
Length = 384
Score = 74.1 bits (179), Expect = 3e-12
Identities = 52/175 (29%), Positives = 76/175 (42%), Gaps = 29/175 (16%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
++G++G PN GKST +A + +IANYPFTT+ N+GV H
Sbjct: 161 DVGLLGMPNAGKSTLITAVSAARPKIANYPFTTLHPNLGVVRIDENH------------- 207
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
M D+ GL+ GA EG GLG++FL L L+HVVD+ +
Sbjct: 208 ----------SFVMADIPGLIEGAAEGAGLGHRFLKHLSRTGLLLHVVDLAPFDETVNPA 257
Query: 122 TENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIG 176
E I ++ R+ D +YG W K L + ++ A L +G
Sbjct: 258 EEALAIINEL----RKYDEELYG--KPRWLVLNKLDMLDEEEAQTRTAAFLEAVG 306
>pir||S74797 GTP-binding protein obg - Synechocystis sp. (strain PCC 6803)
>gi|1652022|dbj|BAA16948.1| (D90901) GTP-binding protein
[Synechocystis sp.]
Length = 368
Score = 74.1 bits (179), Expect = 3e-12
Identities = 47/147 (31%), Positives = 70/147 (46%), Gaps = 34/147 (23%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
E+G++G PN GKST +A + +IA+YPFTT+ N+GV KP
Sbjct: 161 EVGIIGLPNAGKSTLIAALSAARPKIADYPFTTLVPNLGVVR------------KPTGDG 208
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
+ D+ GL+ GA G GLG++FL + L+HV+DVT
Sbjct: 209 TVF-----------ADIPGLIEGAAAGIGLGHEFLRHIERTRLLLHVLDVTA-------- 249
Query: 122 TENHDPIEDIEFLEREIDYWIYGILSK 148
DPI + +++E+D + GI K
Sbjct: 250 ---GDPIANFRVIQQELDAYGRGITEK 273
>gb|AAB81507.1| (AF019407) GTP-binding protein [Caulobacter crescentus]
Length = 354
Score = 73.7 bits (178), Expect = 3e-12
Identities = 41/111 (36%), Positives = 59/111 (52%), Gaps = 23/111 (20%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
++G+VG PN GKSTF +AA+ +IA+YPFTT+ N+GV +
Sbjct: 161 DVGLVGLPNAGKSTFLAAASAAKPKIADYPFTTLTPNLGVV------------------D 202
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVT 112
E L D+ GL+ GA EG GLG +FL + ++ LIH++D T
Sbjct: 203 LSSSERFVL-----ADIPGLIEGASEGAGLGTRFLGHVERSATLIHLIDAT 248
>pir||E70477 GTP-binding protein obg - Aquifex aeolicus
>gi|2984292|gb|AAC07816.1| (AE000771) GTP-binding
protein [Aquifex aeolicus]
Length = 343
Score = 73.4 bits (177), Expect = 4e-12
Identities = 47/140 (33%), Positives = 72/140 (50%), Gaps = 31/140 (22%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
++G+VG PN GKST S T +IA+YPFTT+ N+GV EL +
Sbjct: 162 DVGLVGFPNAGKSTLLSRLTRAKPKIADYPFTTLSPNLGV---------MEL-------D 205
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
+E R +A D+ GL+ AH+G GLG++FL + L HV+DV+ + E
Sbjct: 206 WERRLVIA-------DIPGLIEDAHKGAGLGHEFLRHIERTKFLAHVIDVSDFRERE--- 255
Query: 122 TENHDPIEDIEFLEREIDYW 141
P++ E + RE++ +
Sbjct: 256 -----PVQAFEAINRELELY 270
>pir||F82030 probable GTP-binding protein NMA0345 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7379100|emb|CAB83649.1| (AL162752) putative
GTP-binding protein [Neisseria meningitidis Z2491]
Length = 384
Score = 73.4 bits (177), Expect = 4e-12
Identities = 52/175 (29%), Positives = 75/175 (42%), Gaps = 29/175 (16%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
++G++G PN GKST +A + +IANYPFTT+ N+GV H
Sbjct: 161 DVGLLGMPNAGKSTLITAVSAARPKIANYPFTTLHPNLGVVRIDENH------------- 207
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
M D+ GL+ GA EG GLG++FL L L+HVVD+ +
Sbjct: 208 ----------SFVMADIPGLIEGAAEGAGLGHRFLKHLSRTGLLLHVVDLAPFDETVNPA 257
Query: 122 TENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIG 176
E I ++ R+ D +YG W K L + + A L +G
Sbjct: 258 EEALAIINEL----RKYDEELYG--KPRWLVLNKLDMLDEEEARARTAAFLEAVG 306
>pir||T38450 probable GTP-binding protein - fission yeast (Schizosaccharomyces
pombe) >gi|2388943|emb|CAB11677.1| (Z98978) similar to
putative GTP-binding protein [Schizosaccharomyces pombe]
Length = 392
Score = 72.2 bits (174), Expect = 1e-11
Identities = 81/277 (29%), Positives = 118/277 (42%), Gaps = 50/277 (18%)
Query: 1 MEIGVVGKPNVGKSTFFSAATL-VDVEIANYPFTTID---ANVGVTYAIAEHPCKELGCK 56
++ G+VG PNVGKSTFF A T V ANYP+ TID A V V + C+ K
Sbjct: 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPK 80
Query: 57 PNPQNYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTD 116
+ + + D+AGL GA G GLGN FL +R A+ V V D
Sbjct: 81 SRVPAF----------LTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQV--VRAFDD 128
Query: 117 AEGQPTENH-DPIEDI------------EFLEREIDYWIYGILSKGWDKFAKRIKLQRIK 163
AE E DPI D+ EF+E+ ++ + I S+G A ++++ K
Sbjct: 129 AEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLE-GLRKITSRG----ANTLEMKAKK 183
Query: 164 LESAIAEHLSGIGVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANK 223
E AI E V++ + P WS ++ S KP+I N
Sbjct: 184 EEQAIIE----------KVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNM 233
Query: 224 ADAASEEQINRLIKEGEK------RGYIVVPTSAAAE 254
++ Q N+ + + +K G ++P S A E
Sbjct: 234 SERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFE 270
>sp|P20964|OBG_BACSU SPO0B-ASSOCIATED GTP-BINDING PROTEIN >gi|98326|pir||B32804
GTP-binding protein obg - Bacillus subtilis
>gi|508979|gb|AAA22505.1| (M24537) GTP-binding protein
[Bacillus subtilis] >gi|2635257|emb|CAB14752.1| (Z99118)
GTPase activity [Bacillus subtilis]
Length = 428
Score = 71.8 bits (173), Expect = 1e-11
Identities = 42/137 (30%), Positives = 70/137 (50%), Gaps = 31/137 (22%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
++G+VG P+VGKST S + +IA+Y FTT+ N+G+
Sbjct: 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMV------------------- 200
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
E +G + + M D+ GL+ GAH+G GLG++FL + ++HV+D++G
Sbjct: 201 -ETDDGRSFV---MADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSG-------- 248
Query: 122 TENHDPIEDIEFLEREI 138
E DP +D + +E+
Sbjct: 249 LEGRDPYDDYLTINQEL 265
>gi|6319499 probable purine nucleotide-binding protein; Ybr025cp [Saccharomyces
cerevisiae] >gi|586477|sp|P38219|YBN5_YEAST HYPOTHETICAL
44.2 KD GTP-BINDING PROTEIN IN SCO2-MRF1 INTERGENIC
REGION >gi|626828|pir||S45881 probable purine
nucleotide-binding protein YBR025c - yeast
(Saccharomyces cerevisiae) >gi|498754|emb|CAA53682.1|
(X76078) YBR0309 [Saccharomyces cerevisiae]
>gi|536234|emb|CAA84967.1| (Z35894) ORF YBR025c
[Saccharomyces cerevisiae] >gi|1587583|prf||2206497F ORF
YBR0309 [Saccharomyces cerevisiae]
Length = 394
Score = 71.0 bits (171), Expect = 2e-11
Identities = 57/163 (34%), Positives = 79/163 (47%), Gaps = 17/163 (10%)
Query: 1 MEIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIDANVGVTYAIAEHPCKELGCKPNP 59
++ G+VG NVGKSTFF A T + ANYPF TID I P + C+
Sbjct: 21 LKAGIVGLANVGKSTFFQAITRCPLGNPANYPFATIDPEEA--RVIVPSPRFDKLCEI-- 76
Query: 60 QNYEYREGLALIPVKMI--DVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDA 117
Y++ + +P + D+AGL GA G GLGN FL +R ++ VV DA
Sbjct: 77 ----YKKTASEVPAHLTVYDIAGLTKGASAGEGLGNAFLSHIRSVDSIYQVVRCF--DDA 130
Query: 118 EGQPTENH-DPIEDIEFLEREI---DYWIYGILSKGWDKFAKR 156
E E DP+ D+E + +E+ D +G +K AKR
Sbjct: 131 EIIHVEGDVDPVRDLEIINQELRLKDIEFAQKALEGAEKIAKR 173
>pir||E71517 probable GTP binding protein - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3328847|gb|AAC68015.1| (AE001315) GTP
Binding Protein [Chlamydia trachomatis]
Length = 335
Score = 71.0 bits (171), Expect = 2e-11
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 30/138 (21%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
+IG+VG PN GKST F+ +V++ YPFTT+ ++G+
Sbjct: 160 DIGLVGFPNAGKSTLFNTLARTEVKVGAYPFTTLHPSLGLV------------------- 200
Query: 62 YEYREG-LALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQ 120
++EG L P M D+ G++ GA + RGLG FL + L+ V+D++G
Sbjct: 201 --HQEGMLYQKPWIMADIPGIIEGASQNRGLGLDFLRHIERTRLLLFVIDISG------- 251
Query: 121 PTENHDPIEDIEFLEREI 138
E H P +D++ L E+
Sbjct: 252 -IERHSPEQDLKILMGEL 268
>sp|P44915|YHBZ_HAEIN HYPOTHETICAL 43.4 KD GTP-BINDING PROTEIN HI0877
>gi|1074174|pir||E64099 GTP-binding protein obg -
Haemophilus influenzae (strain Rd KW20)
>gi|1573894|gb|AAC22533.1| (U32769) GTP-binding protein
(yhbZ) [Haemophilus influenzae Rd]
Length = 390
Score = 70.2 bits (169), Expect = 4e-11
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 31/137 (22%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
++G++G PN GKSTF A + ++A+YPFTT+ ++GV H
Sbjct: 161 DVGMLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVKVDDSH------------- 207
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
+ D+ GL+ GA +G GLG +FL L LIH+VD+ P
Sbjct: 208 ----------SFVVADIPGLIEGAADGAGLGIRFLKHLERCRVLIHLVDIA--------P 249
Query: 122 TENHDPIEDIEFLEREI 138
+ +P +++ +E E+
Sbjct: 250 IDGSNPADNMAIIESEL 266
>gb|AAF73594.1| (AE002339) GTP-binding protein, GTP1/Obg family [Chlamydia
muridarum]
Length = 335
Score = 70.2 bits (169), Expect = 4e-11
Identities = 42/137 (30%), Positives = 68/137 (48%), Gaps = 28/137 (20%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
+IG+VG PN GKST F+ +V++ YPFTT+ ++G+ + +
Sbjct: 160 DIGLVGFPNAGKSTLFNTLARTEVKVGAYPFTTLHPSLGLVH---------------QEG 204
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
Y Y++ P M D+ G++ GA + RGLG FL + L+ VVD++G
Sbjct: 205 YLYQK-----PWIMADIPGIIEGASQNRGLGLDFLRHIERTRLLLFVVDISG-------- 251
Query: 122 TENHDPIEDIEFLEREI 138
E P +D++ L E+
Sbjct: 252 IERSSPEKDLQILIGEL 268
>pir||A72065 GTP binding protein - Chlamydophila pneumoniae (strain CWL029)
>gi|4376835|gb|AAD18684.1| (AE001639) GTP binding
protein [Chlamydophila pneumoniae CWL029]
>gi|8978915|dbj|BAA98750.1| (AP002547) GTP binding
protein [Chlamydophila pneumoniae J138]
Length = 335
Score = 69.1 bits (166), Expect = 8e-11
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 28/137 (20%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
+IG+VG PN GKST F+ +V++ YPFTT+ ++G+ CK
Sbjct: 160 DIGLVGFPNAGKSTLFNTLAHTEVKVGAYPFTTLAPSLGLVL------CK---------- 203
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
+ L P + D+ G++ GAH+ +GLG FL + L+ V+DV+ +
Sbjct: 204 ----DRLYQKPWIIADIPGIIEGAHQNKGLGLDFLRHIERTLLLLFVIDVSKR------- 252
Query: 122 TENHDPIEDIEFLEREI 138
E + P ED+E L E+
Sbjct: 253 -ERNSPEEDLETLIHEL 268
>pir||G81602 GTP1/OBG family protein CP0208 [imported] - Chlamydophila
pneumoniae (strain AR39) >gi|7189138|gb|AAF38079.1|
(AE002181) GTP1/OBG family protein [Chlamydophila
pneumoniae AR39]
Length = 343
Score = 69.1 bits (166), Expect = 8e-11
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 28/137 (20%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
+IG+VG PN GKST F+ +V++ YPFTT+ ++G+ CK
Sbjct: 168 DIGLVGFPNAGKSTLFNTLAHTEVKVGAYPFTTLAPSLGLVL------CK---------- 211
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
+ L P + D+ G++ GAH+ +GLG FL + L+ V+DV+ +
Sbjct: 212 ----DRLYQKPWIIADIPGIIEGAHQNKGLGLDFLRHIERTLLLLFVIDVSKR------- 260
Query: 122 TENHDPIEDIEFLEREI 138
E + P ED+E L E+
Sbjct: 261 -ERNSPEEDLETLIHEL 276
>gb|AAG22443.1| (AE003664) CG10628 gene product [Drosophila melanogaster]
Length = 392
Score = 69.1 bits (166), Expect = 8e-11
Identities = 44/147 (29%), Positives = 71/147 (47%), Gaps = 25/147 (17%)
Query: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQN 61
++G+VG PN GKST A + +IA YPFTTI +G
Sbjct: 168 DVGLVGFPNAGKSTLLKAVSNAKPKIAAYPFTTIRPQIG--------------------T 207
Query: 62 YEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQP 121
EYR+ L + + D+ GL+ GAH G+G+KFL + L+ +VD+ G + P
Sbjct: 208 IEYRD---LRSITVADLPGLIEGAHANFGMGHKFLKHIERTRLLVFMVDIFGFQLSPKHP 264
Query: 122 TENHDPIEDIEFLEREIDYWIYGILSK 148
+ D + ++ L +E++ + +L K
Sbjct: 265 --HRDCLANVYALNKELELYDPSLLEK 289
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.396
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145043033
Number of Sequences: 2977
Number of extensions: 6086567
Number of successful extensions: 16299
Number of sequences better than 1.0e-10: 73
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 16122
Number of HSP's gapped (non-prelim): 101
length of query: 397
length of database: 189,106,746
effective HSP length: 57
effective length of query: 340
effective length of database: 154,992,987
effective search space: 52697615580
effective search space used: 52697615580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)