BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1359 (PAB1359) DE:Hypothetical protein
         (357 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (st...   701  0.0
pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii ...   531  e-150
pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (st...   349  2e-95
pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (st...   325  4e-88
pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (st...   273  2e-72
pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (st...   264  1e-69
pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (st...   263  2e-69
pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii ...   257  1e-67
pir||C72308 conserved hypothetical protein - Thermotoga maritima...   257  2e-67
pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (st...   228  6e-59
gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfat...   175  6e-43
gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfat...   148  1e-34
pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii ...   115  6e-25
pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (st...   111  1e-23
gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfat...   109  4e-23
pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (st...   108  8e-23
gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfat...   105  9e-22
gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfat...    95  1e-18
gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfat...    86  7e-16
pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus...    86  7e-16
gb|AAK42280.1| Conserved hypothetical protein [Sulfolobus solfat...    77  3e-13
pir||S78016 hypothetical protein c0628 - Sulfolobus solfataricus...    77  3e-13

>pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (strain Orsay)
           >gi|5458936|emb|CAB50423.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 357
           
 Score =  701 bits (1789), Expect = 0.0
 Identities = 357/357 (100%), Positives = 357/357 (100%)

Query: 1   MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
           MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS
Sbjct: 1   MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60

Query: 61  IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSPRDFS 120
           IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSPRDFS
Sbjct: 61  IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSPRDFS 120

Query: 121 IVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGSEVG 180
           IVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGSEVG
Sbjct: 121 IVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGSEVG 180

Query: 181 LLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAVEEL 240
           LLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAVEEL
Sbjct: 181 LLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAVEEL 240

Query: 241 DGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKAISLG 300
           DGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKAISLG
Sbjct: 241 DGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKAISLG 300

Query: 301 YSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVFREL 357
           YSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVFREL
Sbjct: 301 YSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVFREL 357


>pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii
           >gi|3256945|dbj|BAA29628.1| (AP000002) 362aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 362
           
 Score =  531 bits (1352), Expect = e-150
 Identities = 255/356 (71%), Positives = 308/356 (85%), Gaps = 3/356 (0%)

Query: 1   MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
           MLFSPYPK KREELFDREKEL+E+++A++ GERL+LLLG RR+GKSS+LNVAL EL YPS
Sbjct: 4   MLFSPYPKVKREELFDREKELKEIEEAVKRGERLLLLLGPRRIGKSSILNVALSELPYPS 63

Query: 61  IKVDVRKTYSEFSSVNRYVVGRMLLSAISGK---LEEAKNFLRRVKGISISGVRIDVSPR 117
           +KVDVRK YSE+SSVNRY++G+MLLSA+ G+    EEA+ FL +VKG+ ISGV I+++P+
Sbjct: 64  VKVDVRKVYSEYSSVNRYIIGKMLLSALRGRKRLFEEARMFLEKVKGVRISGVNIEINPK 123

Query: 118 DFSIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGS 177
            FS+ ELLE LN+YG   GR+IIAFDEAQYLRFGGATRYDGI+AYAIDNL+NLTFILTGS
Sbjct: 124 GFSLAELLEVLNEYGSEKGRIIIAFDEAQYLRFGGATRYDGIIAYAIDNLENLTFILTGS 183

Query: 178 EVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAV 237
           EVGLL+DFLKF +P APLFGRYHHDI +++F+S+MS EFL  GF E   +V   E+EKAV
Sbjct: 184 EVGLLYDFLKFEDPKAPLFGRYHHDIFIQRFSSDMSLEFLMAGFREAGVEVERRELEKAV 243

Query: 238 EELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKAI 297
           EELDGI GWL LYGYIRVT+K+ HED M E+++EA  I++ ELSRLFSYSPRY+ ILKAI
Sbjct: 244 EELDGIPGWLALYGYIRVTKKLNHEDCMLEVIKEASSIVNKELSRLFSYSPRYRFILKAI 303

Query: 298 SLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERV 353
           +LGYSRWRDIKDYLTLK+G IND+NFS LL+NLVK GYVE+R+GRY I+DPVL +V
Sbjct: 304 ALGYSRWRDIKDYLTLKVGPINDANFSKLLDNLVKHGYVERRDGRYVITDPVLRKV 359


>pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (strain Orsay)
           >gi|5458722|emb|CAB50209.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 361
           
 Score =  349 bits (887), Expect = 2e-95
 Identities = 171/362 (47%), Positives = 256/362 (70%), Gaps = 7/362 (1%)

Query: 1   MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
           MLF P PKT++++L+DRE+EL+E ++A++ GE +ILLLG+RRLGKSSLLNV L E ++P 
Sbjct: 1   MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60

Query: 61  IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEA----KNFLRRVKGISISGVRIDVSP 116
            KVDVR  Y  + ++ + V+ R ++ ++    +      +  L  +KGI ISG+ ++   
Sbjct: 61  SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFER 120

Query: 117 RDFSIVELLEALNDYGERTGR-VIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILT 175
           R   +  + E ++ + ER G+ V+IAFDEAQYLR  G  RYDG++AYAIDNL N+ FILT
Sbjct: 121 RQ-DLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGV-RYDGLIAYAIDNLPNIIFILT 178

Query: 176 GSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEK 235
           GSEVG+L DFL  + P  PLFGR + +I+L++F  + S +FL +GFEE+   + + EIE+
Sbjct: 179 GSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEIEE 238

Query: 236 AVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILK 295
            V  +DGIVGWLTLYGY+R  +K+  E+++  +  +A+ ++  ELS + +YS RYK ILK
Sbjct: 239 VVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYKFILK 298

Query: 296 AISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVFR 355
           A++LG +RW++IK+Y+  + G IND+ FS+LL+NLVK GY+EKR+G Y I DP+++ +  
Sbjct: 299 AVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYLEKRDGEYIIPDPLVKEIVA 358

Query: 356 EL 357
            L
Sbjct: 359 NL 360


>pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (strain Orsay)
           >gi|5458034|emb|CAB49524.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 354
           
 Score =  325 bits (825), Expect = 4e-88
 Identities = 171/359 (47%), Positives = 251/359 (69%), Gaps = 9/359 (2%)

Query: 1   MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
           MLF+P PKT+RE+L++RE+EL E++++I+ G  L++LLG+RRLGKSSLLNVAL E+   S
Sbjct: 1   MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60

Query: 61  IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKL--EEAKNFLRRVKGISISGVRIDV-SPR 117
           +K+D RK YS+F SV    +  ++L   +     E  K+ L+ ++G+SI GV +++ + +
Sbjct: 61  VKIDARKIYSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSIGGVNLELRTNK 120

Query: 118 DFSIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGS 177
             S+ E+LE +N  GER    +IA DEAQYLRF  A +Y  ++++AID+L N++FILTGS
Sbjct: 121 SVSLSEVLERINSLGER---FVIAIDEAQYLRFSNA-KYPDLISWAIDDLGNISFILTGS 176

Query: 178 EVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAV 237
           EVGLL DFL+ ++P +PLFGR H +I L +FN   S +FL KGFEE+  KV E E+E+ V
Sbjct: 177 EVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELEEVV 236

Query: 238 EELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKAI 297
           +ELDGIVGWLTLYGY R    + H  A++++  +A+ ++  E S+L   SPRY+  +KA+
Sbjct: 237 DELDGIVGWLTLYGYNRYL-GLSHRKALKKLKEDAKRLILNEFSKLKELSPRYELAMKAV 295

Query: 298 SLGYSRWRDIKDYLTLKLG-YINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVFR 355
           + G  RW++IK+ + L  G  I+D NFS++L NLV+  Y+EK    Y I DP++E  FR
Sbjct: 296 ASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPDPLVELAFR 354


>pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (strain Orsay)
           >gi|5458414|emb|CAB49902.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 361
           
 Score =  273 bits (692), Expect = 2e-72
 Identities = 159/369 (43%), Positives = 230/369 (62%), Gaps = 20/369 (5%)

Query: 1   MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
           MLF P PK KRE++FDREKE++E++ AI     + L+LG+RR+GKSSLL   L E+    
Sbjct: 1   MLFDPRPKEKREDIFDREKEIDEIESAIRDYP-ITLILGIRRVGKSSLLKAVLNEME-GG 58

Query: 61  IKVDVRKTYSEFSS-VNRYVVGRMLLSAISGKLEEAKNFL----RRVKGISISGVRIDVS 115
           I +DVRK Y E    +    + + L  AI+   E  K  L    + ++GIS+SGV++  +
Sbjct: 59  IYIDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFT 118

Query: 116 PRDFSIVELLEALNDYGERTGRVIIAFDEAQYLRF---GGATRYDGILAYAIDNLDNLTF 172
            R  S+  LLE LN+ GE    VI+AFDEAQYL+F    G   +  ++AYA DNL N++F
Sbjct: 119 HR-VSLSSLLERLNEQGE----VILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSF 173

Query: 173 ILTGSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELE 232
           + TGSEVGLL DF+  ++  +P++GR + ++ +E F+ E S  FL  GFEE   +V E E
Sbjct: 174 VFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEE 233

Query: 233 IEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKG 292
           I++AV+ L GI GWL  +GY    +    E+AM  +L+ A  ++  EL  L   SPRY  
Sbjct: 234 IKEAVDVLGGIPGWLVEFGY-HYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVL 292

Query: 293 ILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYV----EKRNGRYKISDP 348
           +LKAISLG++RW+ IK+++  + G I +S  +S+LENL    ++    E    RYKI DP
Sbjct: 293 VLKAISLGFNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDP 352

Query: 349 VLERVFREL 357
           V+ER+ +EL
Sbjct: 353 VVERIIKEL 361


>pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (strain Orsay)
           >gi|5457494|emb|CAB48985.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 350
           
 Score =  264 bits (668), Expect = 1e-69
 Identities = 158/358 (44%), Positives = 222/358 (61%), Gaps = 12/358 (3%)

Query: 1   MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
           MLF   PKT+RE++FDRE+E  +L++++E+   L LLLG+RR+GKSSLL   L E   P 
Sbjct: 1   MLFDLRPKTRREDIFDREEEFRKLEESLENYP-LTLLLGIRRVGKSSLLRAFLNER--PG 57

Query: 61  IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSPRDFS 120
           I +D R+ Y+E   + R  + + L S IS      + F  + K IS++   + + PR  S
Sbjct: 58  ILIDCRELYAERGHITREELIKELQSTIS----PFQKFQSKFK-ISLNLKFLTLEPRKLS 112

Query: 121 IVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILA---YAIDNLDNLTFILTGS 177
           + E+   LND GE  G  I+AFDEAQYLRF G+     +LA   YA D+L NL  ILTGS
Sbjct: 113 LREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGS 172

Query: 178 EVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAV 237
           EVGLL DFLK  +  +PL+GR   +++++ F+ + S EFL++GF E+   V E EIE+AV
Sbjct: 173 EVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAV 232

Query: 238 EELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKAI 297
           E LDGI GWL ++G +   R      AM+  L  A+ ++  EL  L   SPRY  IL+AI
Sbjct: 233 ELLDGIPGWLVVFG-VEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAI 291

Query: 298 SLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVFR 355
           +LGY+RW  I+DYL +K   I +    +LLENL K  ++ + +  YKI+DPV+  V R
Sbjct: 292 ALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349


>pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (strain Orsay)
           >gi|5458591|emb|CAB50079.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 348
           
 Score =  263 bits (665), Expect = 2e-69
 Identities = 160/365 (43%), Positives = 231/365 (62%), Gaps = 25/365 (6%)

Query: 1   MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
           MLF P PK ++E+LFDRE+EL EL  +I     + LLLG+RR GKSS++ V+L E+    
Sbjct: 1   MLFDPKPKERKEDLFDREEELAELISSITKYP-ITLLLGIRRTGKSSIIKVSLNEIDAIG 59

Query: 61  IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSPRDFS 120
           I +DVRK             GR+    +  KL+   N +RR++ I+I G++++ +P D +
Sbjct: 60  IYIDVRKAMKG---------GRVSEERL--KLQLLGN-IRRLR-INIPGIKLEPTPLDMT 106

Query: 121 IVELLEALNDYGERTGRVII-AFDEAQYLRFGGATRYDGIL---AYAIDNLDNLTFILTG 176
             ++ + LN YG +  ++I+ AFDEAQY RF G+   +  L   AY+ DN + + F+ +G
Sbjct: 107 --DIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFSG 164

Query: 177 SEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKA 236
           SEVGLL DFL F++  APLFGR +++I LE F  ++S EFL +GF E+   V +  IE A
Sbjct: 165 SEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIEVA 224

Query: 237 VEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKA 296
           V+ELDG+ GWL  YGY  V  +  H +A+E  L+ A  ++ +ELS L   S RY  ILKA
Sbjct: 225 VDELDGVPGWLVEYGYHYVHTR-DHREALERTLQNALSLIRSELSELERRSERYVAILKA 283

Query: 297 ISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYV--EKRNGR--YKISDPVLER 352
           ISLG +RW  IK+Y+  K G I ++ FS+LL+NL K  ++  E ++GR  Y+I DPV+ER
Sbjct: 284 ISLGINRWSKIKEYVEAKHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPVVER 343

Query: 353 VFREL 357
           V R L
Sbjct: 344 VIRSL 348


>pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii
           >gi|3257483|dbj|BAA30166.1| (AP000004) 354aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 354
           
 Score =  257 bits (650), Expect = 1e-67
 Identities = 148/362 (40%), Positives = 222/362 (60%), Gaps = 18/362 (4%)

Query: 1   MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
           MLF   PK +RE++FDREKE ++L+K+IE    + LLLG+RR+GKSSLL   L E   P 
Sbjct: 1   MLFDLRPKERREDIFDREKEFKKLEKSIEDYP-MTLLLGIRRVGKSSLLKAYLSE--NPG 57

Query: 61  IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKG---ISISGVRIDVSPR 117
           I +D R+ Y E   + R  + R        KL+E  N ++++     +S+    + + P+
Sbjct: 58  ILIDCRELYGERGHITRIDLIR--------KLQERGNIVQKLLSRFKVSLDLKFLKIEPK 109

Query: 118 DFSIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILA---YAIDNLDNLTFIL 174
           + S++++ E+LN+ G++ G+ ++AFDEAQYLRF G+     +LA   YA DNL+NL  +L
Sbjct: 110 EVSLMDIFESLNEIGKKMGKFVLAFDEAQYLRFYGSRGGKDLLALFAYAYDNLENLKIVL 169

Query: 175 TGSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIE 234
           TGSEVGLL DFL  N+  +PL+GR   ++ +E F+  +S EFL+ GF E+   V +  IE
Sbjct: 170 TGSEVGLLHDFLGINDYESPLYGRVAGEVYVEPFDLHLSKEFLKAGFREVNLNVEDEIIE 229

Query: 235 KAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGIL 294
           KA+E LDGI GWL L+G +   R+  +E AM+     A+ ++  EL  L   S RY  IL
Sbjct: 230 KAIEMLDGIPGWLVLFG-VEYMREKDYEKAMKRTFEVAKGLILGELRELEKRSRRYLEIL 288

Query: 295 KAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVF 354
           + I+LGY+RW  I+DYL +K     +     LL NL K G++ +  G+Y +SDP+++   
Sbjct: 289 RGIALGYNRWSLIRDYLAVKGIPTPEPRLYELLNNLKKMGWINEVEGKYILSDPLVKVTL 348

Query: 355 RE 356
            E
Sbjct: 349 TE 350


>pir||C72308 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981538|gb|AAD36076.1|AE001762_3 (AE001762)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 365
           
 Score =  257 bits (649), Expect = 2e-67
 Identities = 146/364 (40%), Positives = 232/364 (63%), Gaps = 12/364 (3%)

Query: 1   MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
           +LFS  PKTK+E+LFDRE+EL++L+K +E+   ++++ GLRR+GKSSL+ V L +     
Sbjct: 6   LLFSLTPKTKKEDLFDRERELKDLEKLLETYP-IVVITGLRRVGKSSLVKVFLNKSDLLH 64

Query: 61  IKVDVRKTY-SEFSSVNRYVVGRML---LSAISGKLEEAKNFLRRVKGISISGVRIDVSP 116
           I VD R+ Y +   +++ + + R L   LS IS K ++  N L+RV+GI++SG  I+++P
Sbjct: 65  ITVDGRRLYETSGGNISSHHLTRFLGEELSRIS-KSQKLLNVLKRVRGITVSGTSIELNP 123

Query: 117 RDFSIVELLEALNDYGERTGR-VIIAFDEAQYLRFGGATRYDGILA---YAIDNLDNLTF 172
           ++FS+ +LLE LN+  +R  + ++I FDEAQYLR+ G+   + +LA   Y  DN +N+ F
Sbjct: 124 KEFSLSDLLEKLNETAKRRKKKIVIFFDEAQYLRYYGSRGGNDLLALFAYCYDNFENVRF 183

Query: 173 ILTGSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELE 232
           I++GSEVG+L DFLK  +  +PL GR    + +  F  + S +FL +GF E+  K++  +
Sbjct: 184 IISGSEVGVLHDFLKLEDYSSPLHGRGIGFLTVRPFTFDQSVDFLMEGFREVGEKIN-FD 242

Query: 233 IEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKG 292
           +E+ V E+DGIVG+L L+G ++   K K ++A++E+    + +   E+  L   S RY  
Sbjct: 243 VEEIVREIDGIVGYLVLFG-VKYLEKKKKDEALKEVFHAVKALFEKEMEELRKRSERYPF 301

Query: 293 ILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLER 352
           IL+ I+ G + W  +K+    K  +I DS   SLLE L K  ++EK    Y+I DPV ER
Sbjct: 302 ILRQIARGINTWSALKNIFRAKGDFIGDSRLYSLLETLEKMSFIEKTQSGYRIVDPVFER 361

Query: 353 VFRE 356
           + RE
Sbjct: 362 ILRE 365


>pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (strain Orsay)
           >gi|5458924|emb|CAB50411.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 387
           
 Score =  228 bits (576), Expect = 6e-59
 Identities = 146/377 (38%), Positives = 220/377 (57%), Gaps = 38/377 (10%)

Query: 1   MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
           + F   PK+KRE+L+DRE+ELEEL   IE  + LI+L G+RRLGK+SLL VAL E   P 
Sbjct: 24  LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83

Query: 61  IKVDVRKT--------YSEF-SSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVR 111
           + VD+R          Y  F S++N Y++    ++      ++ K+ L+ V GIS+SG  
Sbjct: 84  VIVDLRGVNPNSRRDLYLRFQSALNDYLLRNKPIA------KKVKDALKMVSGISVSGFS 137

Query: 112 IDVSPRD----FSIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNL 167
           + +S ++    +S++  LE  N         +IA DE Q  R         ++A+  D  
Sbjct: 138 VSISWKNLETLYSLISALEREN--------FVIALDEVQEARGLVGKELASLIAHFYD-Y 188

Query: 168 DNLTFILTGSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFK 227
             +TF+LTGSEVGLL+DFL  + P APL+GR  H+I L++F  E S EFL +GF ++RF 
Sbjct: 189 GEVTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFY 248

Query: 228 VSELEIEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRL---- 283
           V++  ++ AVE LDGIVGWL  +G + + R     + +E +L+EA  ++ +EL +     
Sbjct: 249 VNDEILKLAVERLDGIVGWLVKFGVLSL-RSGASREVLERVLKEASALVLSELDKFLDKR 307

Query: 284 FSYSPRYKGILKAISLGYSRWRDIKDYL-TLKLGYINDSNFSSLLENLVKSGYVEK---- 338
           F    RY  +LKAI+ G + W +IK+ L  ++   I+D   + +L +L+K+  +EK    
Sbjct: 308 FIARKRYLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEG 367

Query: 339 RNGRYKISDPVLERVFR 355
           RN RY+I DPVLE   R
Sbjct: 368 RNVRYRIVDPVLEFALR 384


>gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 356
           
 Score =  175 bits (440), Expect = 6e-43
 Identities = 123/371 (33%), Positives = 196/371 (52%), Gaps = 33/371 (8%)

Query: 1   MLFSPYPKTKREELFDREKELEELKKAIESGER--LILLLGLRRLGKSSLLNVALGELSY 58
           MLF   PK  R++ FDREKE+E+LK     G R  + L+LGLRR GKSS++ + + EL+ 
Sbjct: 1   MLFDTSPKDNRKDFFDREKEIEKLK-----GLRAPITLVLGLRRTGKSSIIKIGINELNL 55

Query: 59  PSIKVDVRK-------TYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISG-- 109
           P I +D+RK       +Y +F    +  + +++      +L      L+ ++GI I G  
Sbjct: 56  PYIYLDLRKFEERNYISYKDFLLELQKEINKLVK-----RLPSLLKALKNIQGIVIMGNE 110

Query: 110 VRIDVSPRD-FSIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLD 168
           ++ + + +D  S   LLE+     +    VII  DEAQ L           LAYA DNL 
Sbjct: 111 IKFNWNRKDRLSFANLLESFEQASK--DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK 168

Query: 169 NLTFILTGSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKV 228
            + FI++GSE+GLL+D+L+  +P +PLFGR    + L+ F+ E + EFL +GF+E     
Sbjct: 169 RIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF 228

Query: 229 SELEIEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFS--- 285
            + E+    E++ GI GWLT +G+I +  K   + A+ + L  A+ ++  E         
Sbjct: 229 KDYEV--VYEKIGGIPGWLTYFGFIYLDNK-NLDFAINQTLEYAKKLILKEFENFLHGRE 285

Query: 286 -YSPRYKGILKAISLGYSRWRDIKDYLTLKLGY-INDSNFSSLLENLVKSGYVEKRNGRY 343
               RY  I++ +S    +W D+K  L L+ G  I+DS   + L  L K  ++ K   +Y
Sbjct: 286 IARKRYLNIMRTLS-KCGKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKY 344

Query: 344 KISDPVLERVF 354
             S+P++   F
Sbjct: 345 CPSEPLISLAF 355


>gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 387
           
 Score =  148 bits (369), Expect = 1e-34
 Identities = 116/359 (32%), Positives = 187/359 (51%), Gaps = 22/359 (6%)

Query: 1   MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
           MLF+  PK  R++L+DREKE+E +K +I  GE  I +LG+RR+GK+S++NVA+ E+    
Sbjct: 1   MLFNTRPKEDRKDLYDREKEIEMIKDSIARGE-WIAVLGMRRIGKTSVVNVAVKEIGAIK 59

Query: 61  IKVDVRKTY-SEFSSVNRYVVGRMLLSAIS---------GKLEEAKNFLRRVKGISISGV 110
           + +++ + + S      ++V+  +L+  I+         GK+ +  + +  V+ I  + V
Sbjct: 60  VSINLMRIHDSRKKQYPKHVLISLLIEEINEAIKNYTILGKVAKLLSNILGVEEIQTNKV 119

Query: 111 RIDVSP-RDFSIVELLEALNDYG-ERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLD 168
           R  ++  R   I  ++  ++    +   +++I  DEAQ L       +  I     DN  
Sbjct: 120 RAKLTKIRGTDITYIIREMDSIARDNKKQLVIILDEAQELAKVNGLDFPSIFHDVYDNCK 179

Query: 169 NLTFILTGSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKV 228
           N   I TGS V L+   LK  E   P FGRY   I L +F  E S EFLEKGFEE   KV
Sbjct: 180 NTVIIFTGSMVKLIEKTLKNIEYTEPFFGRYIRKITLGRFLPEQSREFLEKGFEEEGIKV 239

Query: 229 SELEIEKAVEELDGIVGWLTLYG-YIRVTRKVKHEDAMEEILREARLILSTELSRLFSYS 287
            E  I++AV+ LDGI GWLTL+G     + K+  +  ++EI+ +A   +  E +R F +S
Sbjct: 240 DESVIDEAVKRLDGIPGWLTLFGSEYTFSAKMGTKPRIDEIIEKAINEVRNE-ARNFIFS 298

Query: 288 P----RYKGILKAISL--GYSRWRDI-KDYLTLKLGYINDSNFSSLLENLVKSGYVEKR 339
                RY  ++ A+    G     +I K   T+    I +     +L  LV+  ++E+R
Sbjct: 299 TQSPLRYSAVILALDRLGGKGELHEIVKVSSTILNENIPEPRVYEILNRLVEFDFIERR 357


>pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii
           >gi|3256840|dbj|BAA29523.1| (AP000002) 367aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 367
           
 Score =  115 bits (286), Expect = 6e-25
 Identities = 103/364 (28%), Positives = 174/364 (47%), Gaps = 18/364 (4%)

Query: 3   FSPYPKTKREELFD-REKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPSI 61
           F+  P  + + L+D R K +++L + +  G  + +LLG RR+GK+S++NV   + +    
Sbjct: 7   FTTRPIMEEDCLWDKRRKIVDDLFRTVLRGN-IAILLGPRRVGKTSVVNVISQKFAKRRN 65

Query: 62  KVDVRKTYSEFSSVNRYVVGRMLLSAISGKL-EEAKNFLRRVKGISISGVRIDVSPRDFS 120
              +   +S F       +  +     S KL   +K+++  +KGIS+   +  +      
Sbjct: 66  HHYIYFNFSRFIGARAISIADIEPKRTSLKLITTSKSYVISLKGISVEVRKTSIEEFTSD 125

Query: 121 IVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGSEVG 180
              L+  L+   ER    ++ FDEAQ L       + G++    D+  N++ I TGS  G
Sbjct: 126 FSTLVRILSQNSERG---LLIFDEAQVLARLKNLDFRGLIQEITDSYPNISMIFTGSMPG 182

Query: 181 LLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKV-SELEIEKAVEE 239
           LL ++L    P  P F R      L ++N E   EFL+KGFE     V +ELE+E+AV+E
Sbjct: 183 LLIEYLN-PGPDKPNFMRASETFTLSRWNVEEGLEFLKKGFESYGISVRNELELERAVKE 241

Query: 240 LDGIVGWLTLYG--YIRVTRK-VKHEDAMEEILREARLILSTELSR-----LFSY-SPRY 290
           L GI G+++ YG   I + R  V  E A+   L E++     E  +     L  Y SP Y
Sbjct: 242 LGGIPGFISYYGITVINLVRSGVPVEKALPRALEESKRYALEEWKKDLEAFLNVYNSPIY 301

Query: 291 KGILKAISLGY-SRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPV 349
             ++K ++  Y +  +  + Y  +        +    L+ L K G++    G+Y I DP+
Sbjct: 302 VEVMKVLASSYPTALKGAEVYRRMNRAPKRIQHIYKYLDVLEKVGFIRSEGGKYWIEDPI 361

Query: 350 LERV 353
           L  +
Sbjct: 362 LREL 365


>pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (strain Orsay)
           >gi|5457727|emb|CAB49218.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 385
           
 Score =  111 bits (275), Expect = 1e-23
 Identities = 99/362 (27%), Positives = 171/362 (46%), Gaps = 29/362 (8%)

Query: 1   MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELS--- 57
           + F   P+T  E+LF RE+E+E+L +A+E+G   + +LG R +GK+SL      E +   
Sbjct: 31  LFFDQRPRTLPEQLFGREEEVEKLFRALEAGS-WVAVLGPRMVGKTSLALAGANEFAKEN 89

Query: 58  -YPSIKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSP 116
            Y  + VD+R T + F      ++GR+  S     L+    +L  +  +S  G    ++ 
Sbjct: 90  GYNVVLVDLRDTET-FREATEKILGRLPRSI----LDSISEYLSSISEVSAKGAGAGLTV 144

Query: 117 RDFSIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTG 176
           +         AL+D   +    I+  DE Q ++  G   +   L    +   +L  I TG
Sbjct: 145 KLKKSAPARRALSDALFKVQDTILILDEVQGIQ-QGVPHFLKALGAVFNENHSLQIIFTG 203

Query: 177 SEVGL---LFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEI 233
           S  G+   LF+    +E     +GR    I+L  +   ++ +FL  GFE++     E EI
Sbjct: 204 SYSGVVRRLFEATYSDES----YGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYEEWEI 259

Query: 234 EKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLF-SYSPRYKG 292
              +  L  + GWL LYG  R   +  HE A++  +REA     +EL  +    SP+ + 
Sbjct: 260 RDTIRNLGTLPGWLNLYGVRRYVER-NHEKALKTAIREAVKEAKSELENILEGRSPKARK 318

Query: 293 ILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRN--GRYKISDPVL 350
           +++ ++ G S W D+     +K G I++   S LL  L+   ++  ++  G Y  +DPV 
Sbjct: 319 VVRLLAFGAS-WGDL-----IKTG-ISEDALSRLLGILMDELFILNKDDMGIYYFADPVY 371

Query: 351 ER 352
            +
Sbjct: 372 RK 373


>gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 377
           
 Score =  109 bits (271), Expect = 4e-23
 Identities = 109/377 (28%), Positives = 181/377 (47%), Gaps = 61/377 (16%)

Query: 15  FDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPSIKVDVRK------- 67
           F REKE+E L    + G+  + L+G RR+GK+SLL  +L   S+P   +   +       
Sbjct: 13  FGREKEIESLLGLYKLGQP-VGLIGPRRIGKTSLLLASLEHSSFPYSLISAEEFVRGEKG 71

Query: 68  -TYSEFSSVNRYVVGRMLLSAISGK--LEEAKNFLRRVKGISISGVRIDVS-PRDFSIVE 123
             ++EF S     V   + S  + K  LE+ K++L++++ + +  V++  + P  +S +E
Sbjct: 72  FDFAEFLSAYITSVTSTIYSKANYKIILEKGKSYLKQLRDL-LGQVKVTFNIPELYSTIE 130

Query: 124 L------------------LEALNDYGERTG--RVIIAFDEAQYLRFGGATRYDGILAYA 163
           L                  L+      E+ G  RV+IA DE QYLR    +   GI    
Sbjct: 131 LTLDKAEKKKYLEKEFRDALDLPQILSEKFGLQRVVIAIDEFQYLRLAKQS-IPGIFHIM 189

Query: 164 IDNLD---NLTFILTGSEVGLLFDFLKF-NEPGAPLFGRYHHDIILEKFNSEMSAEFLEK 219
                   N+T++++GS +G++ + L   N+P    F ++ + + +  F+ + S EFL K
Sbjct: 190 RSKWQFHKNVTYVISGSLIGMMMELLSSRNQP----FYQFFYLMKVNPFDRKTSIEFLRK 245

Query: 220 GFEEMRFKVSELEIEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLI--LS 277
           GFE     V   EIE  V+++DG   WL L G   VT K    + +  ++++  L+  L 
Sbjct: 246 GFEVNNLDVKSEEIELIVDQVDGFPAWLNLVGIKIVTEKRSANEVINSLVKDINLVTALE 305

Query: 278 TELSRLFSYSPRYKGILKAISL--GYSRWRDI-KDYLTLKLGYINDSNFSSLLENLVKSG 334
            +L RL   SP  + +LK ++   G    +D+  D LT+  G          L+ L+  G
Sbjct: 306 NDLKRL---SPTARAVLKNLASLGGAGSPKDLGLDLLTVTRG----------LKQLMNYG 352

Query: 335 YVEKR-NGRYKISDPVL 350
            VEK   G Y+I DP+L
Sbjct: 353 LVEKEGRGIYRIVDPIL 369


>pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (strain Orsay)
           >gi|5458557|emb|CAB50045.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 388
           
 Score =  108 bits (268), Expect = 8e-23
 Identities = 104/370 (28%), Positives = 177/370 (47%), Gaps = 26/370 (7%)

Query: 3   FSPYPKTKREELF--DREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
           FS  P T  E L+  +  + ++EL +A   G  + +LLG RR+GK+S++NV  G+     
Sbjct: 7   FSTRPITDEECLWGENHRRIVDELLRATLKGN-ISVLLGPRRVGKTSVVNVVAGKFIRKR 65

Query: 61  IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKL-EEAKNFLRRVKGISISGVRIDVSPRDF 119
               +   +S F       +  +     S KL   +K+++   KG+S+   +  +     
Sbjct: 66  GHHYIYFNFSRFIGARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVEIRKTSIEEFTS 125

Query: 120 SIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGSEV 179
              +LL  L+   +R    ++ FDEAQ L       + G++    D+  N++ I TGS  
Sbjct: 126 DFSKLLRILSQNAKRG---LLIFDEAQVLARLKNLDFRGLIQEITDSYPNISIIFTGSMP 182

Query: 180 GLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVS-ELEIEKAVE 238
           G+L  +L  +E   P F R      L +++ +   EFL+ GF   + +V+ ELE+E+AV+
Sbjct: 183 GILIRYLN-SEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDELELERAVK 241

Query: 239 ELDGIVGWLTLYGYIRVTRKVKH----EDAMEEILREARLILSTELSR-------LFSYS 287
           EL GI G+++ YG + V   VK+    ++A+ + L E+R     E  R       ++S S
Sbjct: 242 ELGGIPGFISYYG-LTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFINVYS-S 299

Query: 288 PRYKGILKAISLGY-SRWRDIKDYLTLKLGYINDSNFSSL---LENLVKSGYVEKRNGRY 343
           P Y  +L+ ++  Y S  R  + Y  L    +       +   L+ L K G++     RY
Sbjct: 300 PIYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIRSDGKRY 359

Query: 344 KISDPVLERV 353
            I DP+L  V
Sbjct: 360 WIEDPLLRIV 369


>gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 182
           
 Score =  105 bits (259), Expect = 9e-22
 Identities = 67/184 (36%), Positives = 105/184 (56%), Gaps = 9/184 (4%)

Query: 179 VGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAVE 238
           +GLL DFL   +PG+PL+GRY+ +I LE+F+ E S +FL KGFEE+  KV E  I+  + 
Sbjct: 1   MGLLHDFLGVEDPGSPLYGRYYFEITLERFDKEKSRQFLRKGFEELSLKVEENVIQDIIA 60

Query: 239 ELDGIVGWLTLYG--YI--RVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGIL 294
            +DGI GWLTL G  Y   R  ++VK + A+   L E   ++S + +     + RY+ +L
Sbjct: 61  MVDGIPGWLTLAGNQYFNNRDLKRVK-DLAINVALNEINSLISVKNNVSPIVAKRYRTVL 119

Query: 295 KAISLGYSRWRDIKDYLTLKLG-YINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERV 353
           + I+ G + W  I + +  + G  I+ S  S++L  L K   +++    Y+  DPV +  
Sbjct: 120 RCIAKGMNSWSKILNCVQNEEGSTISTSVLSNILNTLKKLSIIDE---NYRFLDPVYKEA 176

Query: 354 FREL 357
            R L
Sbjct: 177 SRML 180


>gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 162
           
 Score = 94.8 bits (232), Expect = 1e-18
 Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 7/165 (4%)

Query: 1   MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
           MLF   PK  RE+LFDREKE++E+   I     LIL+ G+RR+GK+S+L VAL E+  P 
Sbjct: 1   MLFDERPKENREDLFDREKEIKEIMSNIN--RPLILITGVRRIGKTSVLKVALNEIKIPH 58

Query: 61  IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSPRDFS 120
           + +D R     +S  + Y    +  +A S KL    + L +++G+SI G  +++  +   
Sbjct: 59  VIIDCRNLRPNYSRGDLY---SLFSNAFSSKLSTFLDVLSKIRGVSILGNSVELKWKGRE 115

Query: 121 IVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAID 165
            V L +  +   E+  R++I  DEAQ LR   +      +A+A D
Sbjct: 116 YVSLSDLFDHLNEK--RIVIGIDEAQKLRGPLSNEIKEAIAHAYD 158


>gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 395
           
 Score = 85.8 bits (209), Expect = 7e-16
 Identities = 100/387 (25%), Positives = 181/387 (45%), Gaps = 59/387 (15%)

Query: 12  EELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPSIKVDVR----- 66
           +E FDRE E+++L + +   +  + ++G+RR+GK+S++  +L  +  P + + V      
Sbjct: 19  DEPFDRENEIKQLVEMMNRRQP-VAIIGVRRIGKTSVILKSLKIIETPKVYLSVEDFIEG 77

Query: 67  ---------KTYSEFSSVN--RYVVGRMLLSAI---SGK--LEEAKNFLRRVK-GISISG 109
                      YS     N   YV  +  +S I    GK  L++ +  +  VK   +I+ 
Sbjct: 78  KSFDLVSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLRELIGYVKLSFNINL 137

Query: 110 VRIDVSPRDF-------SIVELLEALNDYGERTG--RVIIAFDEAQYLRFGGATRYDGI- 159
           V ++V            SI ++LE      E  G   +++A DE QYL+   +  Y GI 
Sbjct: 138 VEVEVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLKL-ASQNYPGIF 196

Query: 160 --LAYAIDNLDNLTFILTGSEVGLLFD-FLKFNEPGAPLFGRYHHDIILEKFNSEMSAEF 216
             L       + ++++++GS VGLL   F    EP    F ++   I +++F+   S  F
Sbjct: 197 HLLRSKWQFHNKVSYVISGSSVGLLEKIFYDKKEP----FYQFFFPIYVKQFDKNTSFNF 252

Query: 217 LEKGFEEMRFKVSELEIEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILRE----- 271
           L++GF +      +  +  A+EELDGI  WL  +G   +       +  ++++ +     
Sbjct: 253 LKQGFRDEGKDYEDNALLLAIEELDGIPAWLNYFGLKSLQCNEVTSECAKKVIEDITFND 312

Query: 272 --ARLILSTELSRLFSYSPRYKGILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLEN 329
              R I+  E ++L       + ILK ++    +  D+K  L L    IN+      L++
Sbjct: 313 PIVRGIIQEEYNKL---GKNARIILKYLAEKGGK-GDLKG-LELSRASINEG-----LKS 362

Query: 330 LVKSGY-VEKRNGRYKISDPVLERVFR 355
           L+ SGY V++  G+Y I DPV+ +V +
Sbjct: 363 LLGSGYIVKEERGKYAIIDPVIVKVLK 389


>pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus
           >gi|1707745|emb|CAA69465.1| (Y08256) orf c01015
           [Sulfolobus solfataricus]
           Length = 395
           
 Score = 85.8 bits (209), Expect = 7e-16
 Identities = 100/387 (25%), Positives = 181/387 (45%), Gaps = 59/387 (15%)

Query: 12  EELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPSIKVDVR----- 66
           +E FDRE E+++L + +   +  + ++G+RR+GK+S++  +L  +  P + + V      
Sbjct: 19  DEPFDRENEIKQLVEMMNRRQP-VAIIGVRRIGKTSVILKSLKIIETPKVYLSVEDFIEG 77

Query: 67  ---------KTYSEFSSVN--RYVVGRMLLSAI---SGK--LEEAKNFLRRVK-GISISG 109
                      YS     N   YV  +  +S I    GK  L++ +  +  VK   +I+ 
Sbjct: 78  KSFDLVSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLRELIGYVKLSFNINL 137

Query: 110 VRIDVSPRDF-------SIVELLEALNDYGERTG--RVIIAFDEAQYLRFGGATRYDGI- 159
           V ++V            SI ++LE      E  G   +++A DE QYL+   +  Y GI 
Sbjct: 138 VEVEVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLKL-ASQNYPGIF 196

Query: 160 --LAYAIDNLDNLTFILTGSEVGLLFD-FLKFNEPGAPLFGRYHHDIILEKFNSEMSAEF 216
             L       + ++++++GS VGLL   F    EP    F ++   I +++F+   S  F
Sbjct: 197 HLLRSKWQFHNKVSYVISGSSVGLLEKIFYDKKEP----FYQFFFPIYVKQFDKNTSFNF 252

Query: 217 LEKGFEEMRFKVSELEIEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILRE----- 271
           L++GF +      +  +  A+EELDGI  WL  +G   +       +  ++++ +     
Sbjct: 253 LKQGFRDEGKDYEDNALLLAIEELDGIPAWLNYFGLKSLQCNEVTSECAKKVIEDITFND 312

Query: 272 --ARLILSTELSRLFSYSPRYKGILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLEN 329
              R I+  E ++L       + ILK ++    +  D+K  L L    IN+      L++
Sbjct: 313 PIVRGIIQEEYNKL---GKNARIILKYLAEKGGK-GDLKG-LELSRASINEG-----LKS 362

Query: 330 LVKSGY-VEKRNGRYKISDPVLERVFR 355
           L+ SGY V++  G+Y I DPV+ +V +
Sbjct: 363 LLGSGYIVKEERGKYAIIDPVIVKVLK 389


>gb|AAK42280.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 360
           
 Score = 76.9 bits (186), Expect = 3e-13
 Identities = 105/375 (28%), Positives = 166/375 (44%), Gaps = 64/375 (17%)

Query: 9   TKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLN---VALG-ELSYPSIKVD 64
           T+ +E FDRE  +  L   I   +  + +L  RR+GKSSLLN   + LG E     I ++
Sbjct: 11  TEEDEFFDREDYVNVLLSYINRRQP-VAILAPRRMGKSSLLNYIKIKLGNEYIVAKISLE 69

Query: 65  VRKTYSEFSSVNRYVVGRMLLSAISGKLE-EAKN-----------FLRRVKGISISGVRI 112
              +  EF+     +  +++L A+S  L+  AKN           FL  +K +SI    +
Sbjct: 70  GITSIEEFADE---LTSKLVLEALSKSLKMRAKNTISSLVASLNQFLGSIKSLSIRMQNL 126

Query: 113 DVSPRDFSI-----VELLEALNDY-------GERTGR-VIIAFDEAQYLRFGGATRYDGI 159
           ++    +S+     ++  E L+D         E TG+ V+I  DE Q +R      +  I
Sbjct: 127 ELYIDRYSLFKENKLKPSEILDDVLLLPQRIAEDTGKNVVIMIDEFQKIRVLKQP-FPKI 185

Query: 160 LAYAIDNLD---NLTFILTGSEVGLLFDFL-KFNEPGAPLFGRYHHDIILEKFNSEMSAE 215
           L      L    N+  I++GSE G++ + + +  EP    F  Y     L+ F+ E S  
Sbjct: 186 LELTRKRLQESKNVEIIVSGSETGIIEEMITEAKEP----FYNYFKIERLKSFDKETSIR 241

Query: 216 FLEKGFEEMRFKVSELEIEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLI 275
           FL +G   ++ K  E   EK  E  +GI  WL L G I      + E  +E IL +  + 
Sbjct: 242 FLNEG---LKGKCKEY-YEKVYELTEGIPAWLNLAGLI-----FERECNIEAILEDPNVE 292

Query: 276 LSTELSRLFSYSPRYKGILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGY 335
           +  +   L   +     +LK ++ G             KL  I  SN   +++ L   G 
Sbjct: 293 IELKKD-LEGLTKNEIKVLKGLAKGN------------KLSEIKVSNIYRVIKILKNRGL 339

Query: 336 VEKRNGRYKISDPVL 350
           V+K N  YKI DP+L
Sbjct: 340 VDKINDEYKIIDPIL 354


>pir||S78016 hypothetical protein c0628 - Sulfolobus solfataricus
           >gi|1707707|emb|CAA69473.1| (Y08256) orf c06028
           [Sulfolobus solfataricus]
           Length = 360
           
 Score = 76.9 bits (186), Expect = 3e-13
 Identities = 105/375 (28%), Positives = 166/375 (44%), Gaps = 64/375 (17%)

Query: 9   TKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLN---VALG-ELSYPSIKVD 64
           T+ +E FDRE  +  L   I   +  + +L  RR+GKSSLLN   + LG E     I ++
Sbjct: 11  TEEDEFFDREDYVNVLLSYINRRQP-VAILAPRRMGKSSLLNYIKIKLGNEYIVAKISLE 69

Query: 65  VRKTYSEFSSVNRYVVGRMLLSAISGKLE-EAKN-----------FLRRVKGISISGVRI 112
              +  EF+     +  +++L A+S  L+  AKN           FL  +K +SI    +
Sbjct: 70  GITSIEEFADE---LTSKLVLEALSKSLKMRAKNTISSLVASLNQFLGSIKSLSIRMQNL 126

Query: 113 DVSPRDFSI-----VELLEALNDY-------GERTGR-VIIAFDEAQYLRFGGATRYDGI 159
           ++    +S+     ++  E L+D         E TG+ V+I  DE Q +R      +  I
Sbjct: 127 ELYIDRYSLFKENKLKPSEILDDVLLLPQRIAEDTGKNVVIMIDEFQKIRVLKQP-FPKI 185

Query: 160 LAYAIDNLD---NLTFILTGSEVGLLFDFL-KFNEPGAPLFGRYHHDIILEKFNSEMSAE 215
           L      L    N+  I++GSE G++ + + +  EP    F  Y     L+ F+ E S  
Sbjct: 186 LELTRKRLQESKNVEIIVSGSETGIIEEMITEAKEP----FYNYFKIERLKSFDKETSIR 241

Query: 216 FLEKGFEEMRFKVSELEIEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLI 275
           FL +G   ++ K  E   EK  E  +GI  WL L G I      + E  +E IL +  + 
Sbjct: 242 FLNEG---LKGKCKEY-YEKVYELTEGIPAWLNLAGLI-----FERECNIEAILEDPNVE 292

Query: 276 LSTELSRLFSYSPRYKGILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGY 335
           +  +   L   +     +LK ++ G             KL  I  SN   +++ L   G 
Sbjct: 293 IELKKD-LEGLTKNEIKVLKGLAKGN------------KLSEIKVSNIYRVIKILKNRGL 339

Query: 336 VEKRNGRYKISDPVL 350
           V+K N  YKI DP+L
Sbjct: 340 VDKINDEYKIIDPIL 354


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.391 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125851275
Number of Sequences: 2977
Number of extensions: 5174536
Number of successful extensions: 17471
Number of sequences better than 1.0e-10: 22
Number of HSP's better than  0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 17388
Number of HSP's gapped (non-prelim): 24
length of query: 357
length of database: 189,106,746
effective HSP length: 57
effective length of query: 300
effective length of database: 154,992,987
effective search space: 46497896100
effective search space used: 46497896100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)