BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1359 (PAB1359) DE:Hypothetical protein
(357 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (st... 701 0.0
pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii ... 531 e-150
pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (st... 349 2e-95
pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (st... 325 4e-88
pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (st... 273 2e-72
pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (st... 264 1e-69
pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (st... 263 2e-69
pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii ... 257 1e-67
pir||C72308 conserved hypothetical protein - Thermotoga maritima... 257 2e-67
pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (st... 228 6e-59
gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfat... 175 6e-43
gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfat... 148 1e-34
pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii ... 115 6e-25
pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (st... 111 1e-23
gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfat... 109 4e-23
pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (st... 108 8e-23
gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfat... 105 9e-22
gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfat... 95 1e-18
gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfat... 86 7e-16
pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus... 86 7e-16
gb|AAK42280.1| Conserved hypothetical protein [Sulfolobus solfat... 77 3e-13
pir||S78016 hypothetical protein c0628 - Sulfolobus solfataricus... 77 3e-13
>pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (strain Orsay)
>gi|5458936|emb|CAB50423.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 357
Score = 701 bits (1789), Expect = 0.0
Identities = 357/357 (100%), Positives = 357/357 (100%)
Query: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS
Sbjct: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
Query: 61 IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSPRDFS 120
IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSPRDFS
Sbjct: 61 IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSPRDFS 120
Query: 121 IVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGSEVG 180
IVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGSEVG
Sbjct: 121 IVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGSEVG 180
Query: 181 LLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAVEEL 240
LLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAVEEL
Sbjct: 181 LLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAVEEL 240
Query: 241 DGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKAISLG 300
DGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKAISLG
Sbjct: 241 DGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKAISLG 300
Query: 301 YSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVFREL 357
YSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVFREL
Sbjct: 301 YSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVFREL 357
>pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii
>gi|3256945|dbj|BAA29628.1| (AP000002) 362aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 362
Score = 531 bits (1352), Expect = e-150
Identities = 255/356 (71%), Positives = 308/356 (85%), Gaps = 3/356 (0%)
Query: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
MLFSPYPK KREELFDREKEL+E+++A++ GERL+LLLG RR+GKSS+LNVAL EL YPS
Sbjct: 4 MLFSPYPKVKREELFDREKELKEIEEAVKRGERLLLLLGPRRIGKSSILNVALSELPYPS 63
Query: 61 IKVDVRKTYSEFSSVNRYVVGRMLLSAISGK---LEEAKNFLRRVKGISISGVRIDVSPR 117
+KVDVRK YSE+SSVNRY++G+MLLSA+ G+ EEA+ FL +VKG+ ISGV I+++P+
Sbjct: 64 VKVDVRKVYSEYSSVNRYIIGKMLLSALRGRKRLFEEARMFLEKVKGVRISGVNIEINPK 123
Query: 118 DFSIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGS 177
FS+ ELLE LN+YG GR+IIAFDEAQYLRFGGATRYDGI+AYAIDNL+NLTFILTGS
Sbjct: 124 GFSLAELLEVLNEYGSEKGRIIIAFDEAQYLRFGGATRYDGIIAYAIDNLENLTFILTGS 183
Query: 178 EVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAV 237
EVGLL+DFLKF +P APLFGRYHHDI +++F+S+MS EFL GF E +V E+EKAV
Sbjct: 184 EVGLLYDFLKFEDPKAPLFGRYHHDIFIQRFSSDMSLEFLMAGFREAGVEVERRELEKAV 243
Query: 238 EELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKAI 297
EELDGI GWL LYGYIRVT+K+ HED M E+++EA I++ ELSRLFSYSPRY+ ILKAI
Sbjct: 244 EELDGIPGWLALYGYIRVTKKLNHEDCMLEVIKEASSIVNKELSRLFSYSPRYRFILKAI 303
Query: 298 SLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERV 353
+LGYSRWRDIKDYLTLK+G IND+NFS LL+NLVK GYVE+R+GRY I+DPVL +V
Sbjct: 304 ALGYSRWRDIKDYLTLKVGPINDANFSKLLDNLVKHGYVERRDGRYVITDPVLRKV 359
>pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (strain Orsay)
>gi|5458722|emb|CAB50209.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 349 bits (887), Expect = 2e-95
Identities = 171/362 (47%), Positives = 256/362 (70%), Gaps = 7/362 (1%)
Query: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
MLF P PKT++++L+DRE+EL+E ++A++ GE +ILLLG+RRLGKSSLLNV L E ++P
Sbjct: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
Query: 61 IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEA----KNFLRRVKGISISGVRIDVSP 116
KVDVR Y + ++ + V+ R ++ ++ + + L +KGI ISG+ ++
Sbjct: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFER 120
Query: 117 RDFSIVELLEALNDYGERTGR-VIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILT 175
R + + E ++ + ER G+ V+IAFDEAQYLR G RYDG++AYAIDNL N+ FILT
Sbjct: 121 RQ-DLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGV-RYDGLIAYAIDNLPNIIFILT 178
Query: 176 GSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEK 235
GSEVG+L DFL + P PLFGR + +I+L++F + S +FL +GFEE+ + + EIE+
Sbjct: 179 GSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEIEE 238
Query: 236 AVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILK 295
V +DGIVGWLTLYGY+R +K+ E+++ + +A+ ++ ELS + +YS RYK ILK
Sbjct: 239 VVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYKFILK 298
Query: 296 AISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVFR 355
A++LG +RW++IK+Y+ + G IND+ FS+LL+NLVK GY+EKR+G Y I DP+++ +
Sbjct: 299 AVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYLEKRDGEYIIPDPLVKEIVA 358
Query: 356 EL 357
L
Sbjct: 359 NL 360
>pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (strain Orsay)
>gi|5458034|emb|CAB49524.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 354
Score = 325 bits (825), Expect = 4e-88
Identities = 171/359 (47%), Positives = 251/359 (69%), Gaps = 9/359 (2%)
Query: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
MLF+P PKT+RE+L++RE+EL E++++I+ G L++LLG+RRLGKSSLLNVAL E+ S
Sbjct: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
Query: 61 IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKL--EEAKNFLRRVKGISISGVRIDV-SPR 117
+K+D RK YS+F SV + ++L + E K+ L+ ++G+SI GV +++ + +
Sbjct: 61 VKIDARKIYSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSIGGVNLELRTNK 120
Query: 118 DFSIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGS 177
S+ E+LE +N GER +IA DEAQYLRF A +Y ++++AID+L N++FILTGS
Sbjct: 121 SVSLSEVLERINSLGER---FVIAIDEAQYLRFSNA-KYPDLISWAIDDLGNISFILTGS 176
Query: 178 EVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAV 237
EVGLL DFL+ ++P +PLFGR H +I L +FN S +FL KGFEE+ KV E E+E+ V
Sbjct: 177 EVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELEEVV 236
Query: 238 EELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKAI 297
+ELDGIVGWLTLYGY R + H A++++ +A+ ++ E S+L SPRY+ +KA+
Sbjct: 237 DELDGIVGWLTLYGYNRYL-GLSHRKALKKLKEDAKRLILNEFSKLKELSPRYELAMKAV 295
Query: 298 SLGYSRWRDIKDYLTLKLG-YINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVFR 355
+ G RW++IK+ + L G I+D NFS++L NLV+ Y+EK Y I DP++E FR
Sbjct: 296 ASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPDPLVELAFR 354
>pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (strain Orsay)
>gi|5458414|emb|CAB49902.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 273 bits (692), Expect = 2e-72
Identities = 159/369 (43%), Positives = 230/369 (62%), Gaps = 20/369 (5%)
Query: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
MLF P PK KRE++FDREKE++E++ AI + L+LG+RR+GKSSLL L E+
Sbjct: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYP-ITLILGIRRVGKSSLLKAVLNEME-GG 58
Query: 61 IKVDVRKTYSEFSS-VNRYVVGRMLLSAISGKLEEAKNFL----RRVKGISISGVRIDVS 115
I +DVRK Y E + + + L AI+ E K L + ++GIS+SGV++ +
Sbjct: 59 IYIDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFT 118
Query: 116 PRDFSIVELLEALNDYGERTGRVIIAFDEAQYLRF---GGATRYDGILAYAIDNLDNLTF 172
R S+ LLE LN+ GE VI+AFDEAQYL+F G + ++AYA DNL N++F
Sbjct: 119 HR-VSLSSLLERLNEQGE----VILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSF 173
Query: 173 ILTGSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELE 232
+ TGSEVGLL DF+ ++ +P++GR + ++ +E F+ E S FL GFEE +V E E
Sbjct: 174 VFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEE 233
Query: 233 IEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKG 292
I++AV+ L GI GWL +GY + E+AM +L+ A ++ EL L SPRY
Sbjct: 234 IKEAVDVLGGIPGWLVEFGY-HYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVL 292
Query: 293 ILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYV----EKRNGRYKISDP 348
+LKAISLG++RW+ IK+++ + G I +S +S+LENL ++ E RYKI DP
Sbjct: 293 VLKAISLGFNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDP 352
Query: 349 VLERVFREL 357
V+ER+ +EL
Sbjct: 353 VVERIIKEL 361
>pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (strain Orsay)
>gi|5457494|emb|CAB48985.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 350
Score = 264 bits (668), Expect = 1e-69
Identities = 158/358 (44%), Positives = 222/358 (61%), Gaps = 12/358 (3%)
Query: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
MLF PKT+RE++FDRE+E +L++++E+ L LLLG+RR+GKSSLL L E P
Sbjct: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYP-LTLLLGIRRVGKSSLLRAFLNER--PG 57
Query: 61 IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSPRDFS 120
I +D R+ Y+E + R + + L S IS + F + K IS++ + + PR S
Sbjct: 58 ILIDCRELYAERGHITREELIKELQSTIS----PFQKFQSKFK-ISLNLKFLTLEPRKLS 112
Query: 121 IVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILA---YAIDNLDNLTFILTGS 177
+ E+ LND GE G I+AFDEAQYLRF G+ +LA YA D+L NL ILTGS
Sbjct: 113 LREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGS 172
Query: 178 EVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAV 237
EVGLL DFLK + +PL+GR +++++ F+ + S EFL++GF E+ V E EIE+AV
Sbjct: 173 EVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAV 232
Query: 238 EELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKAI 297
E LDGI GWL ++G + R AM+ L A+ ++ EL L SPRY IL+AI
Sbjct: 233 ELLDGIPGWLVVFG-VEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAI 291
Query: 298 SLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVFR 355
+LGY+RW I+DYL +K I + +LLENL K ++ + + YKI+DPV+ V R
Sbjct: 292 ALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349
>pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (strain Orsay)
>gi|5458591|emb|CAB50079.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 348
Score = 263 bits (665), Expect = 2e-69
Identities = 160/365 (43%), Positives = 231/365 (62%), Gaps = 25/365 (6%)
Query: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
MLF P PK ++E+LFDRE+EL EL +I + LLLG+RR GKSS++ V+L E+
Sbjct: 1 MLFDPKPKERKEDLFDREEELAELISSITKYP-ITLLLGIRRTGKSSIIKVSLNEIDAIG 59
Query: 61 IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSPRDFS 120
I +DVRK GR+ + KL+ N +RR++ I+I G++++ +P D +
Sbjct: 60 IYIDVRKAMKG---------GRVSEERL--KLQLLGN-IRRLR-INIPGIKLEPTPLDMT 106
Query: 121 IVELLEALNDYGERTGRVII-AFDEAQYLRFGGATRYDGIL---AYAIDNLDNLTFILTG 176
++ + LN YG + ++I+ AFDEAQY RF G+ + L AY+ DN + + F+ +G
Sbjct: 107 --DIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFSG 164
Query: 177 SEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKA 236
SEVGLL DFL F++ APLFGR +++I LE F ++S EFL +GF E+ V + IE A
Sbjct: 165 SEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIEVA 224
Query: 237 VEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKA 296
V+ELDG+ GWL YGY V + H +A+E L+ A ++ +ELS L S RY ILKA
Sbjct: 225 VDELDGVPGWLVEYGYHYVHTR-DHREALERTLQNALSLIRSELSELERRSERYVAILKA 283
Query: 297 ISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYV--EKRNGR--YKISDPVLER 352
ISLG +RW IK+Y+ K G I ++ FS+LL+NL K ++ E ++GR Y+I DPV+ER
Sbjct: 284 ISLGINRWSKIKEYVEAKHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPVVER 343
Query: 353 VFREL 357
V R L
Sbjct: 344 VIRSL 348
>pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii
>gi|3257483|dbj|BAA30166.1| (AP000004) 354aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 354
Score = 257 bits (650), Expect = 1e-67
Identities = 148/362 (40%), Positives = 222/362 (60%), Gaps = 18/362 (4%)
Query: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
MLF PK +RE++FDREKE ++L+K+IE + LLLG+RR+GKSSLL L E P
Sbjct: 1 MLFDLRPKERREDIFDREKEFKKLEKSIEDYP-MTLLLGIRRVGKSSLLKAYLSE--NPG 57
Query: 61 IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKG---ISISGVRIDVSPR 117
I +D R+ Y E + R + R KL+E N ++++ +S+ + + P+
Sbjct: 58 ILIDCRELYGERGHITRIDLIR--------KLQERGNIVQKLLSRFKVSLDLKFLKIEPK 109
Query: 118 DFSIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILA---YAIDNLDNLTFIL 174
+ S++++ E+LN+ G++ G+ ++AFDEAQYLRF G+ +LA YA DNL+NL +L
Sbjct: 110 EVSLMDIFESLNEIGKKMGKFVLAFDEAQYLRFYGSRGGKDLLALFAYAYDNLENLKIVL 169
Query: 175 TGSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIE 234
TGSEVGLL DFL N+ +PL+GR ++ +E F+ +S EFL+ GF E+ V + IE
Sbjct: 170 TGSEVGLLHDFLGINDYESPLYGRVAGEVYVEPFDLHLSKEFLKAGFREVNLNVEDEIIE 229
Query: 235 KAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGIL 294
KA+E LDGI GWL L+G + R+ +E AM+ A+ ++ EL L S RY IL
Sbjct: 230 KAIEMLDGIPGWLVLFG-VEYMREKDYEKAMKRTFEVAKGLILGELRELEKRSRRYLEIL 288
Query: 295 KAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVF 354
+ I+LGY+RW I+DYL +K + LL NL K G++ + G+Y +SDP+++
Sbjct: 289 RGIALGYNRWSLIRDYLAVKGIPTPEPRLYELLNNLKKMGWINEVEGKYILSDPLVKVTL 348
Query: 355 RE 356
E
Sbjct: 349 TE 350
>pir||C72308 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981538|gb|AAD36076.1|AE001762_3 (AE001762)
conserved hypothetical protein [Thermotoga maritima]
Length = 365
Score = 257 bits (649), Expect = 2e-67
Identities = 146/364 (40%), Positives = 232/364 (63%), Gaps = 12/364 (3%)
Query: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
+LFS PKTK+E+LFDRE+EL++L+K +E+ ++++ GLRR+GKSSL+ V L +
Sbjct: 6 LLFSLTPKTKKEDLFDRERELKDLEKLLETYP-IVVITGLRRVGKSSLVKVFLNKSDLLH 64
Query: 61 IKVDVRKTY-SEFSSVNRYVVGRML---LSAISGKLEEAKNFLRRVKGISISGVRIDVSP 116
I VD R+ Y + +++ + + R L LS IS K ++ N L+RV+GI++SG I+++P
Sbjct: 65 ITVDGRRLYETSGGNISSHHLTRFLGEELSRIS-KSQKLLNVLKRVRGITVSGTSIELNP 123
Query: 117 RDFSIVELLEALNDYGERTGR-VIIAFDEAQYLRFGGATRYDGILA---YAIDNLDNLTF 172
++FS+ +LLE LN+ +R + ++I FDEAQYLR+ G+ + +LA Y DN +N+ F
Sbjct: 124 KEFSLSDLLEKLNETAKRRKKKIVIFFDEAQYLRYYGSRGGNDLLALFAYCYDNFENVRF 183
Query: 173 ILTGSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELE 232
I++GSEVG+L DFLK + +PL GR + + F + S +FL +GF E+ K++ +
Sbjct: 184 IISGSEVGVLHDFLKLEDYSSPLHGRGIGFLTVRPFTFDQSVDFLMEGFREVGEKIN-FD 242
Query: 233 IEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKG 292
+E+ V E+DGIVG+L L+G ++ K K ++A++E+ + + E+ L S RY
Sbjct: 243 VEEIVREIDGIVGYLVLFG-VKYLEKKKKDEALKEVFHAVKALFEKEMEELRKRSERYPF 301
Query: 293 ILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLER 352
IL+ I+ G + W +K+ K +I DS SLLE L K ++EK Y+I DPV ER
Sbjct: 302 ILRQIARGINTWSALKNIFRAKGDFIGDSRLYSLLETLEKMSFIEKTQSGYRIVDPVFER 361
Query: 353 VFRE 356
+ RE
Sbjct: 362 ILRE 365
>pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (strain Orsay)
>gi|5458924|emb|CAB50411.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 387
Score = 228 bits (576), Expect = 6e-59
Identities = 146/377 (38%), Positives = 220/377 (57%), Gaps = 38/377 (10%)
Query: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
+ F PK+KRE+L+DRE+ELEEL IE + LI+L G+RRLGK+SLL VAL E P
Sbjct: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
Query: 61 IKVDVRKT--------YSEF-SSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVR 111
+ VD+R Y F S++N Y++ ++ ++ K+ L+ V GIS+SG
Sbjct: 84 VIVDLRGVNPNSRRDLYLRFQSALNDYLLRNKPIA------KKVKDALKMVSGISVSGFS 137
Query: 112 IDVSPRD----FSIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNL 167
+ +S ++ +S++ LE N +IA DE Q R ++A+ D
Sbjct: 138 VSISWKNLETLYSLISALEREN--------FVIALDEVQEARGLVGKELASLIAHFYD-Y 188
Query: 168 DNLTFILTGSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFK 227
+TF+LTGSEVGLL+DFL + P APL+GR H+I L++F E S EFL +GF ++RF
Sbjct: 189 GEVTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFY 248
Query: 228 VSELEIEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRL---- 283
V++ ++ AVE LDGIVGWL +G + + R + +E +L+EA ++ +EL +
Sbjct: 249 VNDEILKLAVERLDGIVGWLVKFGVLSL-RSGASREVLERVLKEASALVLSELDKFLDKR 307
Query: 284 FSYSPRYKGILKAISLGYSRWRDIKDYL-TLKLGYINDSNFSSLLENLVKSGYVEK---- 338
F RY +LKAI+ G + W +IK+ L ++ I+D + +L +L+K+ +EK
Sbjct: 308 FIARKRYLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEG 367
Query: 339 RNGRYKISDPVLERVFR 355
RN RY+I DPVLE R
Sbjct: 368 RNVRYRIVDPVLEFALR 384
>gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 356
Score = 175 bits (440), Expect = 6e-43
Identities = 123/371 (33%), Positives = 196/371 (52%), Gaps = 33/371 (8%)
Query: 1 MLFSPYPKTKREELFDREKELEELKKAIESGER--LILLLGLRRLGKSSLLNVALGELSY 58
MLF PK R++ FDREKE+E+LK G R + L+LGLRR GKSS++ + + EL+
Sbjct: 1 MLFDTSPKDNRKDFFDREKEIEKLK-----GLRAPITLVLGLRRTGKSSIIKIGINELNL 55
Query: 59 PSIKVDVRK-------TYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISG-- 109
P I +D+RK +Y +F + + +++ +L L+ ++GI I G
Sbjct: 56 PYIYLDLRKFEERNYISYKDFLLELQKEINKLVK-----RLPSLLKALKNIQGIVIMGNE 110
Query: 110 VRIDVSPRD-FSIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLD 168
++ + + +D S LLE+ + VII DEAQ L LAYA DNL
Sbjct: 111 IKFNWNRKDRLSFANLLESFEQASK--DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK 168
Query: 169 NLTFILTGSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKV 228
+ FI++GSE+GLL+D+L+ +P +PLFGR + L+ F+ E + EFL +GF+E
Sbjct: 169 RIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF 228
Query: 229 SELEIEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFS--- 285
+ E+ E++ GI GWLT +G+I + K + A+ + L A+ ++ E
Sbjct: 229 KDYEV--VYEKIGGIPGWLTYFGFIYLDNK-NLDFAINQTLEYAKKLILKEFENFLHGRE 285
Query: 286 -YSPRYKGILKAISLGYSRWRDIKDYLTLKLGY-INDSNFSSLLENLVKSGYVEKRNGRY 343
RY I++ +S +W D+K L L+ G I+DS + L L K ++ K +Y
Sbjct: 286 IARKRYLNIMRTLS-KCGKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKY 344
Query: 344 KISDPVLERVF 354
S+P++ F
Sbjct: 345 CPSEPLISLAF 355
>gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 387
Score = 148 bits (369), Expect = 1e-34
Identities = 116/359 (32%), Positives = 187/359 (51%), Gaps = 22/359 (6%)
Query: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
MLF+ PK R++L+DREKE+E +K +I GE I +LG+RR+GK+S++NVA+ E+
Sbjct: 1 MLFNTRPKEDRKDLYDREKEIEMIKDSIARGE-WIAVLGMRRIGKTSVVNVAVKEIGAIK 59
Query: 61 IKVDVRKTY-SEFSSVNRYVVGRMLLSAIS---------GKLEEAKNFLRRVKGISISGV 110
+ +++ + + S ++V+ +L+ I+ GK+ + + + V+ I + V
Sbjct: 60 VSINLMRIHDSRKKQYPKHVLISLLIEEINEAIKNYTILGKVAKLLSNILGVEEIQTNKV 119
Query: 111 RIDVSP-RDFSIVELLEALNDYG-ERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLD 168
R ++ R I ++ ++ + +++I DEAQ L + I DN
Sbjct: 120 RAKLTKIRGTDITYIIREMDSIARDNKKQLVIILDEAQELAKVNGLDFPSIFHDVYDNCK 179
Query: 169 NLTFILTGSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKV 228
N I TGS V L+ LK E P FGRY I L +F E S EFLEKGFEE KV
Sbjct: 180 NTVIIFTGSMVKLIEKTLKNIEYTEPFFGRYIRKITLGRFLPEQSREFLEKGFEEEGIKV 239
Query: 229 SELEIEKAVEELDGIVGWLTLYG-YIRVTRKVKHEDAMEEILREARLILSTELSRLFSYS 287
E I++AV+ LDGI GWLTL+G + K+ + ++EI+ +A + E +R F +S
Sbjct: 240 DESVIDEAVKRLDGIPGWLTLFGSEYTFSAKMGTKPRIDEIIEKAINEVRNE-ARNFIFS 298
Query: 288 P----RYKGILKAISL--GYSRWRDI-KDYLTLKLGYINDSNFSSLLENLVKSGYVEKR 339
RY ++ A+ G +I K T+ I + +L LV+ ++E+R
Sbjct: 299 TQSPLRYSAVILALDRLGGKGELHEIVKVSSTILNENIPEPRVYEILNRLVEFDFIERR 357
>pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii
>gi|3256840|dbj|BAA29523.1| (AP000002) 367aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 367
Score = 115 bits (286), Expect = 6e-25
Identities = 103/364 (28%), Positives = 174/364 (47%), Gaps = 18/364 (4%)
Query: 3 FSPYPKTKREELFD-REKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPSI 61
F+ P + + L+D R K +++L + + G + +LLG RR+GK+S++NV + +
Sbjct: 7 FTTRPIMEEDCLWDKRRKIVDDLFRTVLRGN-IAILLGPRRVGKTSVVNVISQKFAKRRN 65
Query: 62 KVDVRKTYSEFSSVNRYVVGRMLLSAISGKL-EEAKNFLRRVKGISISGVRIDVSPRDFS 120
+ +S F + + S KL +K+++ +KGIS+ + +
Sbjct: 66 HHYIYFNFSRFIGARAISIADIEPKRTSLKLITTSKSYVISLKGISVEVRKTSIEEFTSD 125
Query: 121 IVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGSEVG 180
L+ L+ ER ++ FDEAQ L + G++ D+ N++ I TGS G
Sbjct: 126 FSTLVRILSQNSERG---LLIFDEAQVLARLKNLDFRGLIQEITDSYPNISMIFTGSMPG 182
Query: 181 LLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKV-SELEIEKAVEE 239
LL ++L P P F R L ++N E EFL+KGFE V +ELE+E+AV+E
Sbjct: 183 LLIEYLN-PGPDKPNFMRASETFTLSRWNVEEGLEFLKKGFESYGISVRNELELERAVKE 241
Query: 240 LDGIVGWLTLYG--YIRVTRK-VKHEDAMEEILREARLILSTELSR-----LFSY-SPRY 290
L GI G+++ YG I + R V E A+ L E++ E + L Y SP Y
Sbjct: 242 LGGIPGFISYYGITVINLVRSGVPVEKALPRALEESKRYALEEWKKDLEAFLNVYNSPIY 301
Query: 291 KGILKAISLGY-SRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRNGRYKISDPV 349
++K ++ Y + + + Y + + L+ L K G++ G+Y I DP+
Sbjct: 302 VEVMKVLASSYPTALKGAEVYRRMNRAPKRIQHIYKYLDVLEKVGFIRSEGGKYWIEDPI 361
Query: 350 LERV 353
L +
Sbjct: 362 LREL 365
>pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (strain Orsay)
>gi|5457727|emb|CAB49218.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 385
Score = 111 bits (275), Expect = 1e-23
Identities = 99/362 (27%), Positives = 171/362 (46%), Gaps = 29/362 (8%)
Query: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELS--- 57
+ F P+T E+LF RE+E+E+L +A+E+G + +LG R +GK+SL E +
Sbjct: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGS-WVAVLGPRMVGKTSLALAGANEFAKEN 89
Query: 58 -YPSIKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSP 116
Y + VD+R T + F ++GR+ S L+ +L + +S G ++
Sbjct: 90 GYNVVLVDLRDTET-FREATEKILGRLPRSI----LDSISEYLSSISEVSAKGAGAGLTV 144
Query: 117 RDFSIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTG 176
+ AL+D + I+ DE Q ++ G + L + +L I TG
Sbjct: 145 KLKKSAPARRALSDALFKVQDTILILDEVQGIQ-QGVPHFLKALGAVFNENHSLQIIFTG 203
Query: 177 SEVGL---LFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEI 233
S G+ LF+ +E +GR I+L + ++ +FL GFE++ E EI
Sbjct: 204 SYSGVVRRLFEATYSDES----YGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYEEWEI 259
Query: 234 EKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLF-SYSPRYKG 292
+ L + GWL LYG R + HE A++ +REA +EL + SP+ +
Sbjct: 260 RDTIRNLGTLPGWLNLYGVRRYVER-NHEKALKTAIREAVKEAKSELENILEGRSPKARK 318
Query: 293 ILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRN--GRYKISDPVL 350
+++ ++ G S W D+ +K G I++ S LL L+ ++ ++ G Y +DPV
Sbjct: 319 VVRLLAFGAS-WGDL-----IKTG-ISEDALSRLLGILMDELFILNKDDMGIYYFADPVY 371
Query: 351 ER 352
+
Sbjct: 372 RK 373
>gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 377
Score = 109 bits (271), Expect = 4e-23
Identities = 109/377 (28%), Positives = 181/377 (47%), Gaps = 61/377 (16%)
Query: 15 FDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPSIKVDVRK------- 67
F REKE+E L + G+ + L+G RR+GK+SLL +L S+P + +
Sbjct: 13 FGREKEIESLLGLYKLGQP-VGLIGPRRIGKTSLLLASLEHSSFPYSLISAEEFVRGEKG 71
Query: 68 -TYSEFSSVNRYVVGRMLLSAISGK--LEEAKNFLRRVKGISISGVRIDVS-PRDFSIVE 123
++EF S V + S + K LE+ K++L++++ + + V++ + P +S +E
Sbjct: 72 FDFAEFLSAYITSVTSTIYSKANYKIILEKGKSYLKQLRDL-LGQVKVTFNIPELYSTIE 130
Query: 124 L------------------LEALNDYGERTG--RVIIAFDEAQYLRFGGATRYDGILAYA 163
L L+ E+ G RV+IA DE QYLR + GI
Sbjct: 131 LTLDKAEKKKYLEKEFRDALDLPQILSEKFGLQRVVIAIDEFQYLRLAKQS-IPGIFHIM 189
Query: 164 IDNLD---NLTFILTGSEVGLLFDFLKF-NEPGAPLFGRYHHDIILEKFNSEMSAEFLEK 219
N+T++++GS +G++ + L N+P F ++ + + + F+ + S EFL K
Sbjct: 190 RSKWQFHKNVTYVISGSLIGMMMELLSSRNQP----FYQFFYLMKVNPFDRKTSIEFLRK 245
Query: 220 GFEEMRFKVSELEIEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLI--LS 277
GFE V EIE V+++DG WL L G VT K + + ++++ L+ L
Sbjct: 246 GFEVNNLDVKSEEIELIVDQVDGFPAWLNLVGIKIVTEKRSANEVINSLVKDINLVTALE 305
Query: 278 TELSRLFSYSPRYKGILKAISL--GYSRWRDI-KDYLTLKLGYINDSNFSSLLENLVKSG 334
+L RL SP + +LK ++ G +D+ D LT+ G L+ L+ G
Sbjct: 306 NDLKRL---SPTARAVLKNLASLGGAGSPKDLGLDLLTVTRG----------LKQLMNYG 352
Query: 335 YVEKR-NGRYKISDPVL 350
VEK G Y+I DP+L
Sbjct: 353 LVEKEGRGIYRIVDPIL 369
>pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (strain Orsay)
>gi|5458557|emb|CAB50045.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 388
Score = 108 bits (268), Expect = 8e-23
Identities = 104/370 (28%), Positives = 177/370 (47%), Gaps = 26/370 (7%)
Query: 3 FSPYPKTKREELF--DREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
FS P T E L+ + + ++EL +A G + +LLG RR+GK+S++NV G+
Sbjct: 7 FSTRPITDEECLWGENHRRIVDELLRATLKGN-ISVLLGPRRVGKTSVVNVVAGKFIRKR 65
Query: 61 IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKL-EEAKNFLRRVKGISISGVRIDVSPRDF 119
+ +S F + + S KL +K+++ KG+S+ + +
Sbjct: 66 GHHYIYFNFSRFIGARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVEIRKTSIEEFTS 125
Query: 120 SIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGSEV 179
+LL L+ +R ++ FDEAQ L + G++ D+ N++ I TGS
Sbjct: 126 DFSKLLRILSQNAKRG---LLIFDEAQVLARLKNLDFRGLIQEITDSYPNISIIFTGSMP 182
Query: 180 GLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVS-ELEIEKAVE 238
G+L +L +E P F R L +++ + EFL+ GF + +V+ ELE+E+AV+
Sbjct: 183 GILIRYLN-SEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDELELERAVK 241
Query: 239 ELDGIVGWLTLYGYIRVTRKVKH----EDAMEEILREARLILSTELSR-------LFSYS 287
EL GI G+++ YG + V VK+ ++A+ + L E+R E R ++S S
Sbjct: 242 ELGGIPGFISYYG-LTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFINVYS-S 299
Query: 288 PRYKGILKAISLGY-SRWRDIKDYLTLKLGYINDSNFSSL---LENLVKSGYVEKRNGRY 343
P Y +L+ ++ Y S R + Y L + + L+ L K G++ RY
Sbjct: 300 PIYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIRSDGKRY 359
Query: 344 KISDPVLERV 353
I DP+L V
Sbjct: 360 WIEDPLLRIV 369
>gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 182
Score = 105 bits (259), Expect = 9e-22
Identities = 67/184 (36%), Positives = 105/184 (56%), Gaps = 9/184 (4%)
Query: 179 VGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAVE 238
+GLL DFL +PG+PL+GRY+ +I LE+F+ E S +FL KGFEE+ KV E I+ +
Sbjct: 1 MGLLHDFLGVEDPGSPLYGRYYFEITLERFDKEKSRQFLRKGFEELSLKVEENVIQDIIA 60
Query: 239 ELDGIVGWLTLYG--YI--RVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGIL 294
+DGI GWLTL G Y R ++VK + A+ L E ++S + + + RY+ +L
Sbjct: 61 MVDGIPGWLTLAGNQYFNNRDLKRVK-DLAINVALNEINSLISVKNNVSPIVAKRYRTVL 119
Query: 295 KAISLGYSRWRDIKDYLTLKLG-YINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERV 353
+ I+ G + W I + + + G I+ S S++L L K +++ Y+ DPV +
Sbjct: 120 RCIAKGMNSWSKILNCVQNEEGSTISTSVLSNILNTLKKLSIIDE---NYRFLDPVYKEA 176
Query: 354 FREL 357
R L
Sbjct: 177 SRML 180
>gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 162
Score = 94.8 bits (232), Expect = 1e-18
Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
MLF PK RE+LFDREKE++E+ I LIL+ G+RR+GK+S+L VAL E+ P
Sbjct: 1 MLFDERPKENREDLFDREKEIKEIMSNIN--RPLILITGVRRIGKTSVLKVALNEIKIPH 58
Query: 61 IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSPRDFS 120
+ +D R +S + Y + +A S KL + L +++G+SI G +++ +
Sbjct: 59 VIIDCRNLRPNYSRGDLY---SLFSNAFSSKLSTFLDVLSKIRGVSILGNSVELKWKGRE 115
Query: 121 IVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAID 165
V L + + E+ R++I DEAQ LR + +A+A D
Sbjct: 116 YVSLSDLFDHLNEK--RIVIGIDEAQKLRGPLSNEIKEAIAHAYD 158
>gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 395
Score = 85.8 bits (209), Expect = 7e-16
Identities = 100/387 (25%), Positives = 181/387 (45%), Gaps = 59/387 (15%)
Query: 12 EELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPSIKVDVR----- 66
+E FDRE E+++L + + + + ++G+RR+GK+S++ +L + P + + V
Sbjct: 19 DEPFDRENEIKQLVEMMNRRQP-VAIIGVRRIGKTSVILKSLKIIETPKVYLSVEDFIEG 77
Query: 67 ---------KTYSEFSSVN--RYVVGRMLLSAI---SGK--LEEAKNFLRRVK-GISISG 109
YS N YV + +S I GK L++ + + VK +I+
Sbjct: 78 KSFDLVSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLRELIGYVKLSFNINL 137
Query: 110 VRIDVSPRDF-------SIVELLEALNDYGERTG--RVIIAFDEAQYLRFGGATRYDGI- 159
V ++V SI ++LE E G +++A DE QYL+ + Y GI
Sbjct: 138 VEVEVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLKL-ASQNYPGIF 196
Query: 160 --LAYAIDNLDNLTFILTGSEVGLLFD-FLKFNEPGAPLFGRYHHDIILEKFNSEMSAEF 216
L + ++++++GS VGLL F EP F ++ I +++F+ S F
Sbjct: 197 HLLRSKWQFHNKVSYVISGSSVGLLEKIFYDKKEP----FYQFFFPIYVKQFDKNTSFNF 252
Query: 217 LEKGFEEMRFKVSELEIEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILRE----- 271
L++GF + + + A+EELDGI WL +G + + ++++ +
Sbjct: 253 LKQGFRDEGKDYEDNALLLAIEELDGIPAWLNYFGLKSLQCNEVTSECAKKVIEDITFND 312
Query: 272 --ARLILSTELSRLFSYSPRYKGILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLEN 329
R I+ E ++L + ILK ++ + D+K L L IN+ L++
Sbjct: 313 PIVRGIIQEEYNKL---GKNARIILKYLAEKGGK-GDLKG-LELSRASINEG-----LKS 362
Query: 330 LVKSGY-VEKRNGRYKISDPVLERVFR 355
L+ SGY V++ G+Y I DPV+ +V +
Sbjct: 363 LLGSGYIVKEERGKYAIIDPVIVKVLK 389
>pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus
>gi|1707745|emb|CAA69465.1| (Y08256) orf c01015
[Sulfolobus solfataricus]
Length = 395
Score = 85.8 bits (209), Expect = 7e-16
Identities = 100/387 (25%), Positives = 181/387 (45%), Gaps = 59/387 (15%)
Query: 12 EELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPSIKVDVR----- 66
+E FDRE E+++L + + + + ++G+RR+GK+S++ +L + P + + V
Sbjct: 19 DEPFDRENEIKQLVEMMNRRQP-VAIIGVRRIGKTSVILKSLKIIETPKVYLSVEDFIEG 77
Query: 67 ---------KTYSEFSSVN--RYVVGRMLLSAI---SGK--LEEAKNFLRRVK-GISISG 109
YS N YV + +S I GK L++ + + VK +I+
Sbjct: 78 KSFDLVSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLRELIGYVKLSFNINL 137
Query: 110 VRIDVSPRDF-------SIVELLEALNDYGERTG--RVIIAFDEAQYLRFGGATRYDGI- 159
V ++V SI ++LE E G +++A DE QYL+ + Y GI
Sbjct: 138 VEVEVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLKL-ASQNYPGIF 196
Query: 160 --LAYAIDNLDNLTFILTGSEVGLLFD-FLKFNEPGAPLFGRYHHDIILEKFNSEMSAEF 216
L + ++++++GS VGLL F EP F ++ I +++F+ S F
Sbjct: 197 HLLRSKWQFHNKVSYVISGSSVGLLEKIFYDKKEP----FYQFFFPIYVKQFDKNTSFNF 252
Query: 217 LEKGFEEMRFKVSELEIEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILRE----- 271
L++GF + + + A+EELDGI WL +G + + ++++ +
Sbjct: 253 LKQGFRDEGKDYEDNALLLAIEELDGIPAWLNYFGLKSLQCNEVTSECAKKVIEDITFND 312
Query: 272 --ARLILSTELSRLFSYSPRYKGILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLEN 329
R I+ E ++L + ILK ++ + D+K L L IN+ L++
Sbjct: 313 PIVRGIIQEEYNKL---GKNARIILKYLAEKGGK-GDLKG-LELSRASINEG-----LKS 362
Query: 330 LVKSGY-VEKRNGRYKISDPVLERVFR 355
L+ SGY V++ G+Y I DPV+ +V +
Sbjct: 363 LLGSGYIVKEERGKYAIIDPVIVKVLK 389
>gb|AAK42280.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 360
Score = 76.9 bits (186), Expect = 3e-13
Identities = 105/375 (28%), Positives = 166/375 (44%), Gaps = 64/375 (17%)
Query: 9 TKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLN---VALG-ELSYPSIKVD 64
T+ +E FDRE + L I + + +L RR+GKSSLLN + LG E I ++
Sbjct: 11 TEEDEFFDREDYVNVLLSYINRRQP-VAILAPRRMGKSSLLNYIKIKLGNEYIVAKISLE 69
Query: 65 VRKTYSEFSSVNRYVVGRMLLSAISGKLE-EAKN-----------FLRRVKGISISGVRI 112
+ EF+ + +++L A+S L+ AKN FL +K +SI +
Sbjct: 70 GITSIEEFADE---LTSKLVLEALSKSLKMRAKNTISSLVASLNQFLGSIKSLSIRMQNL 126
Query: 113 DVSPRDFSI-----VELLEALNDY-------GERTGR-VIIAFDEAQYLRFGGATRYDGI 159
++ +S+ ++ E L+D E TG+ V+I DE Q +R + I
Sbjct: 127 ELYIDRYSLFKENKLKPSEILDDVLLLPQRIAEDTGKNVVIMIDEFQKIRVLKQP-FPKI 185
Query: 160 LAYAIDNLD---NLTFILTGSEVGLLFDFL-KFNEPGAPLFGRYHHDIILEKFNSEMSAE 215
L L N+ I++GSE G++ + + + EP F Y L+ F+ E S
Sbjct: 186 LELTRKRLQESKNVEIIVSGSETGIIEEMITEAKEP----FYNYFKIERLKSFDKETSIR 241
Query: 216 FLEKGFEEMRFKVSELEIEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLI 275
FL +G ++ K E EK E +GI WL L G I + E +E IL + +
Sbjct: 242 FLNEG---LKGKCKEY-YEKVYELTEGIPAWLNLAGLI-----FERECNIEAILEDPNVE 292
Query: 276 LSTELSRLFSYSPRYKGILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGY 335
+ + L + +LK ++ G KL I SN +++ L G
Sbjct: 293 IELKKD-LEGLTKNEIKVLKGLAKGN------------KLSEIKVSNIYRVIKILKNRGL 339
Query: 336 VEKRNGRYKISDPVL 350
V+K N YKI DP+L
Sbjct: 340 VDKINDEYKIIDPIL 354
>pir||S78016 hypothetical protein c0628 - Sulfolobus solfataricus
>gi|1707707|emb|CAA69473.1| (Y08256) orf c06028
[Sulfolobus solfataricus]
Length = 360
Score = 76.9 bits (186), Expect = 3e-13
Identities = 105/375 (28%), Positives = 166/375 (44%), Gaps = 64/375 (17%)
Query: 9 TKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLN---VALG-ELSYPSIKVD 64
T+ +E FDRE + L I + + +L RR+GKSSLLN + LG E I ++
Sbjct: 11 TEEDEFFDREDYVNVLLSYINRRQP-VAILAPRRMGKSSLLNYIKIKLGNEYIVAKISLE 69
Query: 65 VRKTYSEFSSVNRYVVGRMLLSAISGKLE-EAKN-----------FLRRVKGISISGVRI 112
+ EF+ + +++L A+S L+ AKN FL +K +SI +
Sbjct: 70 GITSIEEFADE---LTSKLVLEALSKSLKMRAKNTISSLVASLNQFLGSIKSLSIRMQNL 126
Query: 113 DVSPRDFSI-----VELLEALNDY-------GERTGR-VIIAFDEAQYLRFGGATRYDGI 159
++ +S+ ++ E L+D E TG+ V+I DE Q +R + I
Sbjct: 127 ELYIDRYSLFKENKLKPSEILDDVLLLPQRIAEDTGKNVVIMIDEFQKIRVLKQP-FPKI 185
Query: 160 LAYAIDNLD---NLTFILTGSEVGLLFDFL-KFNEPGAPLFGRYHHDIILEKFNSEMSAE 215
L L N+ I++GSE G++ + + + EP F Y L+ F+ E S
Sbjct: 186 LELTRKRLQESKNVEIIVSGSETGIIEEMITEAKEP----FYNYFKIERLKSFDKETSIR 241
Query: 216 FLEKGFEEMRFKVSELEIEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLI 275
FL +G ++ K E EK E +GI WL L G I + E +E IL + +
Sbjct: 242 FLNEG---LKGKCKEY-YEKVYELTEGIPAWLNLAGLI-----FERECNIEAILEDPNVE 292
Query: 276 LSTELSRLFSYSPRYKGILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGY 335
+ + L + +LK ++ G KL I SN +++ L G
Sbjct: 293 IELKKD-LEGLTKNEIKVLKGLAKGN------------KLSEIKVSNIYRVIKILKNRGL 339
Query: 336 VEKRNGRYKISDPVL 350
V+K N YKI DP+L
Sbjct: 340 VDKINDEYKIIDPIL 354
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.391
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125851275
Number of Sequences: 2977
Number of extensions: 5174536
Number of successful extensions: 17471
Number of sequences better than 1.0e-10: 22
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 17388
Number of HSP's gapped (non-prelim): 24
length of query: 357
length of database: 189,106,746
effective HSP length: 57
effective length of query: 300
effective length of database: 154,992,987
effective search space: 46497896100
effective search space used: 46497896100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)