BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1361 (PAB1361) DE:Hypothetical protein
         (207 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75065 hypothetical protein PAB1361 - Pyrococcus abyssi (st...   422  e-117
pir||C75104 hypothetical protein PAB1566 - Pyrococcus abyssi (st...   190  1e-47

>pir||H75065 hypothetical protein PAB1361 - Pyrococcus abyssi (strain Orsay)
           >gi|5458934|emb|CAB50421.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 207
           
 Score =  422 bits (1074), Expect = e-117
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MKFSGLPIGLDELIAIARAFKREYKEVFDIVIYGSTMLGKENPNDFDFMVILKRGKETDR 60
           MKFSGLPIGLDELIAIARAFKREYKEVFDIVIYGSTMLGKENPNDFDFMVILKRGKETDR
Sbjct: 1   MKFSGLPIGLDELIAIARAFKREYKEVFDIVIYGSTMLGKENPNDFDFMVILKRGKETDR 60

Query: 61  FEIAFEFKQRLLDLGFPHEKLDVKAIALEDLFDPNYLATPGIIVGGFSLTKEKPIHELMN 120
           FEIAFEFKQRLLDLGFPHEKLDVKAIALEDLFDPNYLATPGIIVGGFSLTKEKPIHELMN
Sbjct: 61  FEIAFEFKQRLLDLGFPHEKLDVKAIALEDLFDPNYLATPGIIVGGFSLTKEKPIHELMN 120

Query: 121 GEGYSLFKIIVSGLSRNERNKFSFALKGRDGRSGILKDLGGIFLAPWVVLIPVENTYRFK 180
           GEGYSLFKIIVSGLSRNERNKFSFALKGRDGRSGILKDLGGIFLAPWVVLIPVENTYRFK
Sbjct: 121 GEGYSLFKIIVSGLSRNERNKFSFALKGRDGRSGILKDLGGIFLAPWVVLIPVENTYRFK 180

Query: 181 EFLDHWKVKYEVYLTYGTKLSITPPIL 207
           EFLDHWKVKYEVYLTYGTKLSITPPIL
Sbjct: 181 EFLDHWKVKYEVYLTYGTKLSITPPIL 207


>pir||C75104 hypothetical protein PAB1566 - Pyrococcus abyssi (strain Orsay)
           >gi|5458648|emb|CAB50136.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 214
           
 Score =  190 bits (477), Expect = 1e-47
 Identities = 89/177 (50%), Positives = 125/177 (70%)

Query: 17  ARAFKREYKEVFDIVIYGSTMLGKENPNDFDFMVILKRGKETDRFEIAFEFKQRLLDLGF 76
           A+ F + +KEVFD+V+YGST+LGKE PND D M++ +    T          +R L    
Sbjct: 26  AKRFVKNHKEVFDVVLYGSTVLGKEKPNDLDLMILTRTKLPTLELRNLILELKRTLSKTL 85

Query: 77  PHEKLDVKAIALEDLFDPNYLATPGIIVGGFSLTKEKPIHELMNGEGYSLFKIIVSGLSR 136
           P  KLD++A++LE+LFDPN LA+ G+I+ G SLT+ KP+ ELMNG+ Y+LF+  + GL R
Sbjct: 86  PRAKLDIRAMSLEELFDPNNLASLGVIIEGVSLTRNKPMAELMNGKAYTLFRFTLEGLPR 145

Query: 137 NERNKFSFALKGRDGRSGILKDLGGIFLAPWVVLIPVENTYRFKEFLDHWKVKYEVY 193
            +R +F +ALKGRD +SG+LK+L G     WVV++PVE+TYRFK+FL+ W VKYE +
Sbjct: 146 KDRVRFQYALKGRDMKSGLLKELNGEQWGAWVVVVPVEHTYRFKDFLELWGVKYEAF 202


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.146    0.432 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80623800
Number of Sequences: 2977
Number of extensions: 3464391
Number of successful extensions: 6211
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6208
Number of HSP's gapped (non-prelim): 2
length of query: 207
length of database: 189,106,746
effective HSP length: 51
effective length of query: 156
effective length of database: 158,583,909
effective search space: 24739089804
effective search space used: 24739089804
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)