BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1362 (PAB1362) DE:Hypothetical protein
         (242 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75065 hypothetical protein PAB1362 - Pyrococcus abyssi (st...   488  e-137
pir||F71166 hypothetical protein PH0530 - Pyrococcus horikoshii ...   471  e-132

>pir||G75065 hypothetical protein PAB1362 - Pyrococcus abyssi (strain Orsay)
           >gi|5458933|emb|CAB50420.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 242
           
 Score =  488 bits (1243), Expect = e-137
 Identities = 242/242 (100%), Positives = 242/242 (100%)

Query: 1   MGVEKVPKYNIPVKKVEYVFIELDKMKPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIP 60
           MGVEKVPKYNIPVKKVEYVFIELDKMKPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIP
Sbjct: 1   MGVEKVPKYNIPVKKVEYVFIELDKMKPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIP 60

Query: 61  GTDEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDEGVKVYTWYPAFKGSVEKVIERLKAE 120
           GTDEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDEGVKVYTWYPAFKGSVEKVIERLKAE
Sbjct: 61  GTDEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDEGVKVYTWYPAFKGSVEKVIERLKAE 120

Query: 121 GLEVIEDPKAEERAEKGEIAFALVGEKSYAISGGLEEQKKVSKVLDEMDQAKEIELVYYG 180
           GLEVIEDPKAEERAEKGEIAFALVGEKSYAISGGLEEQKKVSKVLDEMDQAKEIELVYYG
Sbjct: 121 GLEVIEDPKAEERAEKGEIAFALVGEKSYAISGGLEEQKKVSKVLDEMDQAKEIELVYYG 180

Query: 181 LKEDAKADMEKGEIDYVFIRKAPSKEEVMELVKRGEVFSPKTTRHVLPFIPDKIDVKLED 240
           LKEDAKADMEKGEIDYVFIRKAPSKEEVMELVKRGEVFSPKTTRHVLPFIPDKIDVKLED
Sbjct: 181 LKEDAKADMEKGEIDYVFIRKAPSKEEVMELVKRGEVFSPKTTRHVLPFIPDKIDVKLED 240

Query: 241 LF 242
           LF
Sbjct: 241 LF 242


>pir||F71166 hypothetical protein PH0530 - Pyrococcus horikoshii
           >gi|3256936|dbj|BAA29619.1| (AP000002) 242aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 242
           
 Score =  471 bits (1199), Expect = e-132
 Identities = 230/242 (95%), Positives = 237/242 (97%)

Query: 1   MGVEKVPKYNIPVKKVEYVFIELDKMKPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIP 60
           MGVEKVPKYNIPVKKVEYVF++LDKMKPHEQLVQRELEDFIESVT SGIFWK MLLAKIP
Sbjct: 1   MGVEKVPKYNIPVKKVEYVFVDLDKMKPHEQLVQRELEDFIESVTSSGIFWKAMLLAKIP 60

Query: 61  GTDEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDEGVKVYTWYPAFKGSVEKVIERLKAE 120
           GTDEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDEGVKVYTWYPAFKGSVEKVIERLKAE
Sbjct: 61  GTDEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDEGVKVYTWYPAFKGSVEKVIERLKAE 120

Query: 121 GLEVIEDPKAEERAEKGEIAFALVGEKSYAISGGLEEQKKVSKVLDEMDQAKEIELVYYG 180
           GLEVIEDP AEE+AE+GE+AFALVGEKSY I GGLEEQKKVSKVLDEMDQAKEIELVYYG
Sbjct: 121 GLEVIEDPNAEEKAERGEVAFALVGEKSYIIPGGLEEQKKVSKVLDEMDQAKEIELVYYG 180

Query: 181 LKEDAKADMEKGEIDYVFIRKAPSKEEVMELVKRGEVFSPKTTRHVLPFIPDKIDVKLED 240
           LKEDAKADMEKGEIDYVF+RKAP+KEEVMELVKRGEVFSPKTTRHVLPFIPDKIDVKLED
Sbjct: 181 LKEDAKADMEKGEIDYVFVRKAPTKEEVMELVKRGEVFSPKTTRHVLPFIPDKIDVKLED 240

Query: 241 LF 242
           LF
Sbjct: 241 LF 242


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.138    0.392 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90467673
Number of Sequences: 2977
Number of extensions: 3883259
Number of successful extensions: 10705
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10703
Number of HSP's gapped (non-prelim): 2
length of query: 242
length of database: 189,106,746
effective HSP length: 56
effective length of query: 186
effective length of database: 155,591,474
effective search space: 28940014164
effective search space used: 28940014164
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 164 (68.3 bits)