BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1363 (PAB1363) DE:Hypothetical protein
         (300 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75065 hypothetical protein PAB1363 - Pyrococcus abyssi (st...   591  e-168
pir||G71166 hypothetical protein PH0531 - Pyrococcus horikoshii ...   537  e-152

>pir||F75065 hypothetical protein PAB1363 - Pyrococcus abyssi (strain Orsay)
           >gi|5458932|emb|CAB50419.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 300
           
 Score =  591 bits (1506), Expect = e-168
 Identities = 300/300 (100%), Positives = 300/300 (100%)

Query: 1   MKASKLAVKLLKTENDEIIYYDPIYHGRTLKVIGIDDDPALVMEYLLAQYKEKGYNVIVF 60
           MKASKLAVKLLKTENDEIIYYDPIYHGRTLKVIGIDDDPALVMEYLLAQYKEKGYNVIVF
Sbjct: 1   MKASKLAVKLLKTENDEIIYYDPIYHGRTLKVIGIDDDPALVMEYLLAQYKEKGYNVIVF 60

Query: 61  DTSGKFPTSLFDNILRIEENSPAGLDPLKLARVGLIKDPYSAVTIIQTIYELDRASTEKL 120
           DTSGKFPTSLFDNILRIEENSPAGLDPLKLARVGLIKDPYSAVTIIQTIYELDRASTEKL
Sbjct: 61  DTSGKFPTSLFDNILRIEENSPAGLDPLKLARVGLIKDPYSAVTIIQTIYELDRASTEKL 120

Query: 121 YADFIKGKVNSMDEVVRSKESYAEVINESYTELDEMLFSGEPMKVPESCLIDLSALNSIT 180
           YADFIKGKVNSMDEVVRSKESYAEVINESYTELDEMLFSGEPMKVPESCLIDLSALNSIT
Sbjct: 121 YADFIKGKVNSMDEVVRSKESYAEVINESYTELDEMLFSGEPMKVPESCLIDLSALNSIT 180

Query: 181 LTGNAFLILAAMLEDRRSVAYGLYDVSVLTFTDSGNAGLPLITRAARKRVSIVGTRYALD 240
           LTGNAFLILAAMLEDRRSVAYGLYDVSVLTFTDSGNAGLPLITRAARKRVSIVGTRYALD
Sbjct: 181 LTGNAFLILAAMLEDRRSVAYGLYDVSVLTFTDSGNAGLPLITRAARKRVSIVGTRYALD 240

Query: 241 QILNIPGPTLLLYNDPDVQSAIYESQGVPQGFRRFVEKGEGAYIVRSPETIEVEFGMLLR 300
           QILNIPGPTLLLYNDPDVQSAIYESQGVPQGFRRFVEKGEGAYIVRSPETIEVEFGMLLR
Sbjct: 241 QILNIPGPTLLLYNDPDVQSAIYESQGVPQGFRRFVEKGEGAYIVRSPETIEVEFGMLLR 300


>pir||G71166 hypothetical protein PH0531 - Pyrococcus horikoshii
           >gi|3256937|dbj|BAA29620.1| (AP000002) 303aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 303
           
 Score =  537 bits (1369), Expect = e-152
 Identities = 261/299 (87%), Positives = 288/299 (96%)

Query: 1   MKASKLAVKLLKTENDEIIYYDPIYHGRTLKVIGIDDDPALVMEYLLAQYKEKGYNVIVF 60
           MK SKLAVKLLK ENDEIIYYDP+YHGRTLKVIGIDDDP  VMEYLL+QYKEKGYN+IVF
Sbjct: 1   MKYSKLAVKLLKAENDEIIYYDPVYHGRTLKVIGIDDDPVDVMEYLLSQYKEKGYNLIVF 60

Query: 61  DTSGKFPTSLFDNILRIEENSPAGLDPLKLARVGLIKDPYSAVTIIQTIYELDRASTEKL 120
           DTSGKFPTSLFDNI+RIEEN+PAGLDPL+LA+VGLIKDPYSAVTI+QTIYELD+ASTEKL
Sbjct: 61  DTSGKFPTSLFDNIVRIEENAPAGLDPLRLAKVGLIKDPYSAVTIVQTIYELDKASTEKL 120

Query: 121 YADFIKGKVNSMDEVVRSKESYAEVINESYTELDEMLFSGEPMKVPESCLIDLSALNSIT 180
           YADFIKGK++S+ E V+ KESYAEVINESYTELDEMLFSGEPMK+PESCLID+SALNS+T
Sbjct: 121 YADFIKGKISSVSEAVKVKESYAEVINESYTELDEMLFSGEPMKIPESCLIDMSALNSVT 180

Query: 181 LTGNAFLILAAMLEDRRSVAYGLYDVSVLTFTDSGNAGLPLITRAARKRVSIVGTRYALD 240
           LTGNAFLI++AMLEDRRS+AYGLYDV+VLTFTDSGNAGLPLITR AR+RV+I+GTRY LD
Sbjct: 181 LTGNAFLIMSAMLEDRRSIAYGLYDVAVLTFTDSGNAGLPLITRPARRRVTILGTRYPLD 240

Query: 241 QILNIPGPTLLLYNDPDVQSAIYESQGVPQGFRRFVEKGEGAYIVRSPETIEVEFGMLL 299
           Q+L+IPGPTL+LYNDPDVQSAIYESQGVPQGFRRFVEKGEGAYI RSPETIEV+FG LL
Sbjct: 241 QVLSIPGPTLMLYNDPDVQSAIYESQGVPQGFRRFVEKGEGAYIRRSPETIEVDFGELL 299


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.138    0.381 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108759161
Number of Sequences: 2977
Number of extensions: 4621724
Number of successful extensions: 11055
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11053
Number of HSP's gapped (non-prelim): 2
length of query: 300
length of database: 189,106,746
effective HSP length: 58
effective length of query: 242
effective length of database: 154,394,500
effective search space: 37363469000
effective search space used: 37363469000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)