BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1364 (PAB1364) DE:Hypothetical protein
(117 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75065 hypothetical protein PAB1364 - Pyrococcus abyssi (st... 225 9e-59
sp|O58268|Y532_PYRHO HYPOTHETICAL PROTEIN PH0532 >gi|7429560|pir... 219 5e-57
sp|Q58394|Y987_METJA HYPOTHETICAL PROTEIN MJ0987 >gi|2128619|pir... 116 8e-26
gi|11498750 erpK protein, putative [Archaeoglobus fulgidus] >gi|... 110 5e-24
sp|O26774|Y678_METTH HYPOTHETICAL PROTEIN MTH678 >gi|7429561|pir... 99 1e-20
gb|AAG18836.1| (AE004987) Vng0234c [Halobacterium sp. NRC-1] 83 7e-16
emb|CAB57573.1| (Y18930) hypothetical protein [Sulfolobus solfat... 80 6e-15
gb|AAK41027.1| Hypothetical protein [Sulfolobus solfataricus] 80 6e-15
sp|Q9YC11|YE40_AERPE HYPOTHETICAL PROTEIN APE1440 >gi|7445208|pi... 79 1e-14
emb|CAC12263.1| (AL445066) probable Gim, beta subunit [Thermopla... 71 2e-12
>pir||E75065 hypothetical protein PAB1364 - Pyrococcus abyssi (strain Orsay)
>gi|5458931|emb|CAB50418.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 117
Score = 225 bits (568), Expect = 9e-59
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MQNIPPQVQAMLGQLESYQQQLQLVIQQKQKVQADLNEAKKALEEIEALPDDAQVYKTVG 60
MQNIPPQVQAMLGQLESYQQQLQLVIQQKQKVQADLNEAKKALEEIEALPDDAQVYKTVG
Sbjct: 1 MQNIPPQVQAMLGQLESYQQQLQLVIQQKQKVQADLNEAKKALEEIEALPDDAQVYKTVG 60
Query: 61 TLIVKTTKEKALQELKEKVETLEVRLNALNRQEQKINEKVKELTQKIQAALRPPTAG 117
TLIVKTTKEKALQELKEKVETLEVRLNALNRQEQKINEKVKELTQKIQAALRPPTAG
Sbjct: 61 TLIVKTTKEKALQELKEKVETLEVRLNALNRQEQKINEKVKELTQKIQAALRPPTAG 117
>sp|O58268|Y532_PYRHO HYPOTHETICAL PROTEIN PH0532 >gi|7429560|pir||H71166 hypothetical
protein PH0532 - Pyrococcus horikoshii
>gi|3256938|dbj|BAA29621.1| (AP000002) 117aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 117
Score = 219 bits (553), Expect = 5e-57
Identities = 111/117 (94%), Positives = 116/117 (98%)
Query: 1 MQNIPPQVQAMLGQLESYQQQLQLVIQQKQKVQADLNEAKKALEEIEALPDDAQVYKTVG 60
MQNIPPQVQAMLGQL++YQQQLQLVIQQKQKVQADLNEAKKALEEIE LPDDAQ+YKTVG
Sbjct: 1 MQNIPPQVQAMLGQLDTYQQQLQLVIQQKQKVQADLNEAKKALEEIETLPDDAQIYKTVG 60
Query: 61 TLIVKTTKEKALQELKEKVETLEVRLNALNRQEQKINEKVKELTQKIQAALRPPTAG 117
TLIVKTTKEKA+QELKEK+ETLEVRLNALNRQEQKINEKVKELTQKIQAALRPPTAG
Sbjct: 61 TLIVKTTKEKAVQELKEKIETLEVRLNALNRQEQKINEKVKELTQKIQAALRPPTAG 117
>sp|Q58394|Y987_METJA HYPOTHETICAL PROTEIN MJ0987 >gi|2128619|pir||C64423 conserved
hypothetical protein MJ0987 - Methanococcus jannaschii
>gi|1591649|gb|AAB98989.1| (U67541) erpK protein isolog
[Methanococcus jannaschii]
Length = 116
Score = 116 bits (287), Expect = 8e-26
Identities = 60/116 (51%), Positives = 82/116 (69%), Gaps = 3/116 (2%)
Query: 1 MQNIPPQVQAMLGQLESYQQQLQLVIQQKQKVQADLNEAKKALEEIEALPDDAQVYKTVG 60
+ +PPQ+QA L QL+ QQQLQ+++ QKQ V+ +L E KKALEE+E D +VYK VG
Sbjct: 3 VMELPPQIQAQLMQLQQLQQQLQMILMQKQSVETELKECKKALEELEKSSSD-EVYKLVG 61
Query: 61 TLIVKTTKEKALQELKEKVETLEVRLNALNRQEQKINEKVKELTQKIQAALRPPTA 116
L VK KE +EL+EKVETLE+R+ L +QE+K+ ++KEL +KIQ + PTA
Sbjct: 62 GLFVKRKKEDVKKELEEKVETLELRVKTLEKQEEKLQSRLKELQEKIQKMI--PTA 115
>gi|11498750 erpK protein, putative [Archaeoglobus fulgidus]
>gi|6136598|sp|O29115|YB50_ARCFU HYPOTHETICAL PROTEIN
AF1150 >gi|7429559|pir||E69393 probable erpK protein -
Archaeoglobus fulgidus >gi|2649436|gb|AAB90093.1|
(AE001024) erpK protein, putative [Archaeoglobus
fulgidus]
Length = 116
Score = 110 bits (272), Expect = 5e-24
Identities = 53/113 (46%), Positives = 77/113 (67%)
Query: 1 MQNIPPQVQAMLGQLESYQQQLQLVIQQKQKVQADLNEAKKALEEIEALPDDAQVYKTVG 60
M +PPQVQ ++ QL+ QQQLQ VI Q+ +V+A L + ++ALEE++ + D+ VYK VG
Sbjct: 1 MGELPPQVQNLVAQLQQLQQQLQAVITQRAQVEALLRDTEQALEELQKVDDETPVYKAVG 60
Query: 61 TLIVKTTKEKALQELKEKVETLEVRLNALNRQEQKINEKVKELTQKIQAALRP 113
++VK KE ++EL EK ET E+R+ L RQE+K+ E+ E QK+Q L P
Sbjct: 61 NILVKEKKEDVIKELTEKKETYEIRIKTLQRQEEKLRERFAETQQKLQNLLSP 113
>sp|O26774|Y678_METTH HYPOTHETICAL PROTEIN MTH678 >gi|7429561|pir||C69190 conserved
hypothetical protein MTH678 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621763|gb|AAB85183.1| (AE000848) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 121
Score = 99.1 bits (243), Expect = 1e-20
Identities = 44/109 (40%), Positives = 74/109 (67%)
Query: 4 IPPQVQAMLGQLESYQQQLQLVIQQKQKVQADLNEAKKALEEIEALPDDAQVYKTVGTLI 63
+P VQ L Q + QQQ Q + QKQ V+ +NE +KALEE+ DDA+VYK+ G ++
Sbjct: 3 LPQNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNIL 62
Query: 64 VKTTKEKALQELKEKVETLEVRLNALNRQEQKINEKVKELTQKIQAALR 112
++ K++ +EL+EK+ETL++R + RQE+++ +K++E+ IQ A++
Sbjct: 63 IRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAMK 111
>gb|AAG18836.1| (AE004987) Vng0234c [Halobacterium sp. NRC-1]
Length = 125
Score = 83.1 bits (202), Expect = 7e-16
Identities = 40/109 (36%), Positives = 68/109 (61%)
Query: 3 NIPPQVQAMLGQLESYQQQLQLVIQQKQKVQADLNEAKKALEEIEALPDDAQVYKTVGTL 62
N+PP+ Q L QL+ Q++ Q V QKQ+ + L+EA+ AL+ + + + +Y+ VG L
Sbjct: 4 NLPPEAQEKLEQLQDLQEKAQNVATQKQQAEQQLSEAETALDALGDIEESTTMYREVGEL 63
Query: 63 IVKTTKEKALQELKEKVETLEVRLNALNRQEQKINEKVKELTQKIQAAL 111
+V+T + A +L EKV LEVR+ L +QE ++ E+ + L +++Q L
Sbjct: 64 LVETEYDNAHDDLDEKVSDLEVRVETLQKQEDRVQEQFESLQEELQDML 112
>emb|CAB57573.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 126
Score = 80.0 bits (194), Expect = 6e-15
Identities = 38/110 (34%), Positives = 65/110 (58%)
Query: 2 QNIPPQVQAMLGQLESYQQQLQLVIQQKQKVQADLNEAKKALEEIEALPDDAQVYKTVGT 61
+ +PP+VQA L + + + QL ++ +K ++ +L E K LEE+ L DA +YK VG
Sbjct: 3 EKLPPEVQAQLAKFQQLKDQLDRLLLEKSTIENELREINKVLEELSVLNADATIYKIVGN 62
Query: 62 LIVKTTKEKALQELKEKVETLEVRLNALNRQEQKINEKVKELTQKIQAAL 111
L+VK+ K +EL ++ E LE+R +QE + +++++L KI L
Sbjct: 63 LLVKSDKTSVEKELNDRKELLELRSRTYQKQESILRKQLEDLQAKINDML 112
>gb|AAK41027.1| Hypothetical protein [Sulfolobus solfataricus]
Length = 126
Score = 80.0 bits (194), Expect = 6e-15
Identities = 38/110 (34%), Positives = 65/110 (58%)
Query: 2 QNIPPQVQAMLGQLESYQQQLQLVIQQKQKVQADLNEAKKALEEIEALPDDAQVYKTVGT 61
+ +PP+VQA L + + + QL ++ +K ++ +L E K LEE+ L DA +YK VG
Sbjct: 3 EKLPPEVQAQLAKFQQLKDQLDRLLLEKSTIENELREINKVLEELSVLNADATIYKIVGN 62
Query: 62 LIVKTTKEKALQELKEKVETLEVRLNALNRQEQKINEKVKELTQKIQAAL 111
L+VK+ K +EL ++ E LE+R +QE + +++++L KI L
Sbjct: 63 LLVKSDKTSVEKELNDRKELLELRSRTYQKQESILRKQLEDLQAKINDML 112
>sp|Q9YC11|YE40_AERPE HYPOTHETICAL PROTEIN APE1440 >gi|7445208|pir||G72622 probable
prefoldin subunit APE1440 - Aeropyrum pernix (strain
K1) >gi|5105123|dbj|BAA80437.1| (AP000061) 123aa long
hypothetical prefoldin subunit [Aeropyrum pernix]
Length = 123
Score = 78.8 bits (191), Expect = 1e-14
Identities = 33/117 (28%), Positives = 75/117 (63%)
Query: 1 MQNIPPQVQAMLGQLESYQQQLQLVIQQKQKVQADLNEAKKALEEIEALPDDAQVYKTVG 60
++ +PP+V+A + ++ L +V+++K V+A L E + L+E+E LP+DA++Y+ G
Sbjct: 2 VERLPPEVEAKYTKYLKLRETLSVVMREKATVEAGLAEVESVLKELEGLPEDAELYRLTG 61
Query: 61 TLIVKTTKEKALQELKEKVETLEVRLNALNRQEQKINEKVKELTQKIQAALRPPTAG 117
++VK +K + +++L ++ E LE++L L QE+ + ++++ + +++ L+ G
Sbjct: 62 FVLVKKSKNEVVEDLNKRKEDLELKLKVLKSQEEHLKKELERIESELRRLLQGGAVG 118
>emb|CAC12263.1| (AL445066) probable Gim, beta subunit [Thermoplasma acidophilum]
Length = 124
Score = 71.4 bits (172), Expect = 2e-12
Identities = 33/107 (30%), Positives = 65/107 (59%), Gaps = 1/107 (0%)
Query: 3 NIPPQVQAMLGQLESYQQQLQLVIQQKQKVQADLNEAKKALEEIEALPDDAQVYKTVGTL 62
NI +Q L Q + ++ ++ + Q+ ++ L E +K L+E+ L D+ +Y+TVG++
Sbjct: 5 NISAYLQNQLRQAQELEENIEKLATQRYQLDLSLKEMQKTLDELNKLDDNTPIYRTVGSI 64
Query: 63 IVKT-TKEKALQELKEKVETLEVRLNALNRQEQKINEKVKELTQKIQ 108
+ + K+K + EL E++E ++RL+ L +Q++ + EK KEL I+
Sbjct: 65 LYRVQDKKKLVDELDEQIELTKIRLSTLEKQQKSLEEKYKELQNAIR 111
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.308 0.125 0.313
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34511525
Number of Sequences: 2977
Number of extensions: 1136532
Number of successful extensions: 17041
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17027
Number of HSP's gapped (non-prelim): 11
length of query: 117
length of database: 189,106,746
effective HSP length: 66
effective length of query: 51
effective length of database: 149,606,604
effective search space: 7629936804
effective search space used: 7629936804
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.6 bits)
S2: 159 (66.3 bits)