BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1365 (PAB1365) DE:Hypothetical protein
         (118 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75065 hypothetical protein PAB1365 - Pyrococcus abyssi (st...   232  8e-61
pir||A71167 hypothetical protein PH0533 - Pyrococcus horikoshii ...   199  6e-51

>pir||D75065 hypothetical protein PAB1365 - Pyrococcus abyssi (strain Orsay)
           >gi|5458930|emb|CAB50417.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 118
           
 Score =  232 bits (586), Expect = 8e-61
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MKKVVHIGLPKLSEDELIEVGEIAQKVIINYIFDHLAKSEVRDMEVTARINQGETLDLEL 60
           MKKVVHIGLPKLSEDELIEVGEIAQKVIINYIFDHLAKSEVRDMEVTARINQGETLDLEL
Sbjct: 1   MKKVVHIGLPKLSEDELIEVGEIAQKVIINYIFDHLAKSEVRDMEVTARINQGETLDLEL 60

Query: 61  EVYVEVPIFVKVDVESLIDEAIDRAYEVVEEYLRKLAKGKGNEGREEAEEPLEEPEEG 118
           EVYVEVPIFVKVDVESLIDEAIDRAYEVVEEYLRKLAKGKGNEGREEAEEPLEEPEEG
Sbjct: 61  EVYVEVPIFVKVDVESLIDEAIDRAYEVVEEYLRKLAKGKGNEGREEAEEPLEEPEEG 118


>pir||A71167 hypothetical protein PH0533 - Pyrococcus horikoshii
           >gi|3256939|dbj|BAA29622.1| (AP000002) 119aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 119
           
 Score =  199 bits (502), Expect = 6e-51
 Identities = 98/110 (89%), Positives = 109/110 (99%)

Query: 1   MKKVVHIGLPKLSEDELIEVGEIAQKVIINYIFDHLAKSEVRDMEVTARINQGETLDLEL 60
           M+KV+HIGLPKLSE+ELIE+G+IAQ+VII+YIF+HLAKSEVRDMEVTARINQGETLDLEL
Sbjct: 4   MRKVIHIGLPKLSEEELIEIGDIAQRVIIDYIFEHLAKSEVRDMEVTARINQGETLDLEL 63

Query: 61  EVYVEVPIFVKVDVESLIDEAIDRAYEVVEEYLRKLAKGKGNEGREEAEE 110
           EVYVEVPIFV+VDVESLIDEAID+AYEVVE +LRKLAKGKGNEGREEAEE
Sbjct: 64  EVYVEVPIFVRVDVESLIDEAIDKAYEVVERHLRKLAKGKGNEGREEAEE 113


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.311    0.137    0.358 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41501781
Number of Sequences: 2977
Number of extensions: 1518568
Number of successful extensions: 4774
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4772
Number of HSP's gapped (non-prelim): 2
length of query: 118
length of database: 189,106,746
effective HSP length: 58
effective length of query: 60
effective length of database: 154,394,500
effective search space: 9263670000
effective search space used: 9263670000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.7 bits)
S2: 159 (66.3 bits)