BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PAB1366 (PAB1366) DE:Hypothetical protein (330 letters) Database: ./suso.pep; /banques/blast2/nr.pep 598,487 sequences; 189,106,746 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||C75065 hypothetical protein PAB1366 - Pyrococcus abyssi (st... 645 0.0 pir||B71167 hypothetical protein PH0534 - Pyrococcus horikoshii ... 562 e-159 sp|Q58395|Y988_METJA HYPOTHETICAL PROTEIN MJ0988 >gi|2128620|pir... 183 2e-45 pir||F70440 conserved hypothetical protein aq_1630 - Aquifex aeo... 84 2e-15 pir||D72622 hypothetical protein APE1437 - Aeropyrum pernix (str... 84 2e-15 dbj|BAB06892.1| (AP001518) unknown conserved protein [Bacillus h... 82 9e-15 pir||F69999 conserved hypothetical protein ytqI - Bacillus subti... 76 4e-13 sp|Q49428|Y371_MYCGE HYPOTHETICAL PROTEIN MG371 >gi|1361596|pir|... 72 1e-11 sp|P75229|Y371_MYCPN HYPOTHETICAL PROTEIN MG371 HOMOLOG (G12_ORF... 69 9e-11 >pir||C75065 hypothetical protein PAB1366 - Pyrococcus abyssi (strain Orsay) >gi|5458929|emb|CAB50416.1| (AJ248287) hypothetical protein [Pyrococcus abyssi] Length = 330 Score = 645 bits (1645), Expect = 0.0 Identities = 330/330 (100%), Positives = 330/330 (100%) Query: 1 MRGERKLKNLLKSLKRDEGIILLCHHNADPDSLGSAIAFSNFLLDRGLRNVRIGVAQSIA 60 MRGERKLKNLLKSLKRDEGIILLCHHNADPDSLGSAIAFSNFLLDRGLRNVRIGVAQSIA Sbjct: 1 MRGERKLKNLLKSLKRDEGIILLCHHNADPDSLGSAIAFSNFLLDRGLRNVRIGVAQSIA 60 Query: 61 SYSRRLLKFSRVPIERNPKISERVVFIFDTSSLEQLEPIKIPPNAKLIVIDHHVEKENPI 120 SYSRRLLKFSRVPIERNPKISERVVFIFDTSSLEQLEPIKIPPNAKLIVIDHHVEKENPI Sbjct: 61 SYSRRLLKFSRVPIERNPKISERVVFIFDTSSLEQLEPIKIPPNAKLIVIDHHVEKENPI 120 Query: 121 PADISVIDPKRTSTAEIVWELFKKLGYKDEDSAKVLLAAIISDTSSFRYANAKTFKTVSE 180 PADISVIDPKRTSTAEIVWELFKKLGYKDEDSAKVLLAAIISDTSSFRYANAKTFKTVSE Sbjct: 121 PADISVIDPKRTSTAEIVWELFKKLGYKDEDSAKVLLAAIISDTSSFRYANAKTFKTVSE 180 Query: 181 ILELYDFSISEVSQLVAPVSDENVEQSKRIAVLKACQRMEIHKVRKFIIVTSKVSAYEAL 240 ILELYDFSISEVSQLVAPVSDENVEQSKRIAVLKACQRMEIHKVRKFIIVTSKVSAYEAL Sbjct: 181 ILELYDFSISEVSQLVAPVSDENVEQSKRIAVLKACQRMEIHKVRKFIIVTSKVSAYEAL 240 Query: 241 ACKVFLQLGADVAIVGSEKDGVRISARAKDYLVKKGLHLGKLMEKVGPIIGGSGGGHPGA 300 ACKVFLQLGADVAIVGSEKDGVRISARAKDYLVKKGLHLGKLMEKVGPIIGGSGGGHPGA Sbjct: 241 ACKVFLQLGADVAIVGSEKDGVRISARAKDYLVKKGLHLGKLMEKVGPIIGGSGGGHPGA 300 Query: 301 AGANGKENLDEAIKFLVKEVQRFLKGVGDG 330 AGANGKENLDEAIKFLVKEVQRFLKGVGDG Sbjct: 301 AGANGKENLDEAIKFLVKEVQRFLKGVGDG 330 >pir||B71167 hypothetical protein PH0534 - Pyrococcus horikoshii >gi|3256940|dbj|BAA29623.1| (AP000002) 329aa long hypothetical protein [Pyrococcus horikoshii] Length = 329 Score = 562 bits (1434), Expect = e-159 Identities = 280/330 (84%), Positives = 307/330 (92%), Gaps = 1/330 (0%) Query: 1 MRGERKLKNLLKSLKRDEGIILLCHHNADPDSLGSAIAFSNFLLDRGLRNVRIGVAQSIA 60 M+GERKLK LL+SL RDEGIILLCHHNADPDSLGSAIAFSNFLL +G +RIGVAQSIA Sbjct: 1 MKGERKLKKLLESLNRDEGIILLCHHNADPDSLGSAIAFSNFLLSKGFSRIRIGVAQSIA 60 Query: 61 SYSRRLLKFSRVPIERNPKISERVVFIFDTSSLEQLEPIKIPPNAKLIVIDHHVEKENPI 120 SYSRRL+ SRVPIE++P I E V+FIFDTSS+EQLEPI++PP AK++VIDHHVEKENPI Sbjct: 61 SYSRRLVALSRVPIEKDPVIKENVIFIFDTSSIEQLEPIEVPP-AKIVVIDHHVEKENPI 119 Query: 121 PADISVIDPKRTSTAEIVWELFKKLGYKDEDSAKVLLAAIISDTSSFRYANAKTFKTVSE 180 PAD+++IDP RTSTAEIVWELFKK Y DE+SAK LLA IISDTS+FRYANAKTFK V E Sbjct: 120 PADVAIIDPTRTSTAEIVWELFKKFNYSDENSAKALLAGIISDTSNFRYANAKTFKAVYE 179 Query: 181 ILELYDFSISEVSQLVAPVSDENVEQSKRIAVLKACQRMEIHKVRKFIIVTSKVSAYEAL 240 ILELYDFSI EVSQLVAPVSDENV+QS+RIA+LKACQRMEIHKV+KF+IVTSKVSAYEAL Sbjct: 180 ILELYDFSIPEVSQLVAPVSDENVDQSRRIAILKACQRMEIHKVKKFVIVTSKVSAYEAL 239 Query: 241 ACKVFLQLGADVAIVGSEKDGVRISARAKDYLVKKGLHLGKLMEKVGPIIGGSGGGHPGA 300 ACKVFLQLGADVAIVGSEKDGVRISARAKDYLVK+GLHLGK+MEKVGPII GSGGGH GA Sbjct: 240 ACKVFLQLGADVAIVGSEKDGVRISARAKDYLVKQGLHLGKIMEKVGPIIKGSGGGHAGA 299 Query: 301 AGANGKENLDEAIKFLVKEVQRFLKGVGDG 330 AGANGKENLDEAIKFLVKEVQ+FLKGVG+G Sbjct: 300 AGANGKENLDEAIKFLVKEVQKFLKGVGNG 329 >sp|Q58395|Y988_METJA HYPOTHETICAL PROTEIN MJ0988 >gi|2128620|pir||D64423 hypothetical protein MJ0988 - Methanococcus jannaschii >gi|1591650|gb|AAB98990.1| (U67541) conserved hypothetical protein [Methanococcus jannaschii] Length = 329 Score = 183 bits (461), Expect = 2e-45 Identities = 124/319 (38%), Positives = 186/319 (57%), Gaps = 18/319 (5%) Query: 10 LLKSLKRDEGIILLCHHNADPDSLGSAIAFSNFLLDRGLRNVRIGV-AQSIASYSRRLLK 68 LL+ LKRDE ++ LCHHNADPD++GS +A +L + N + + A S++ SR +L Sbjct: 3 LLEYLKRDE-VLFLCHHNADPDAVGSCVALK-YLASQLNPNGKFRISADSVSKLSRNILN 60 Query: 69 F--SRVPIERNPKISERVVFIFDTSSLEQLEP-IKIPPNAKLIVIDHHVEKENPIPADIS 125 RV IE PK+ E VFI DT+S+ QL+ ++I+IDHH + + Sbjct: 61 EIGERVDIEIYPKLPE-TVFIVDTASINQLKVNFDELKEREVILIDHHKKTDLADICKYY 119 Query: 126 VIDPKRTSTAEIVWELFKKLGYKDEDSAKV-LLAAIISDTSSFRYANAKTFKTVSEILEL 184 +I ST+EI+ E+FK+L + ++ LL I+ DT + AN+KTF+ +S +++ Sbjct: 120 IIKEDYPSTSEIIAEIFKELNIFPPKNVRIALLCGIVYDTKHLKLANSKTFELISYLIK- 178 Query: 185 YDFSISEVSQLVAPVSDENVEQSKRIAVLKACQRMEIHKVRKFIIVTSKVSAYEALACKV 244 D S ++ L++ SD SKR A LKAC RMEI + K I S VS++EA K Sbjct: 179 -DISFQKILYLLSQESDV----SKRTAHLKACSRMEIREFDKLRIALSHVSSHEASCAKT 233 Query: 245 FLQLGADVAI---VGSEKDGVRISARAKDYLVKKGLHLGKLMEKVGPIIGGSGGGHPGAA 301 + +GADVA V ++ +R+SAR + + V K +HLG LMEK+G +GGSGGGH A Sbjct: 234 IVSIGADVAFVVAVRKKEKEIRVSARCRKH-VSKYVHLGNLMEKIGKELGGSGGGHSEAG 292 Query: 302 GANGKENLDEAIKFLVKEV 320 G N + ++ + ++KEV Sbjct: 293 GLNAPYDKSKSKEKVIKEV 311 >pir||F70440 conserved hypothetical protein aq_1630 - Aquifex aeolicus >gi|2983973|gb|AAC07520.1| (AE000748) hypothetical protein [Aquifex aeolicus] Length = 325 Score = 84.3 bits (205), Expect = 2e-15 Identities = 101/334 (30%), Positives = 155/334 (46%), Gaps = 41/334 (12%) Query: 9 NLLKSLKRDEGIILLCHHNADPDSLGSAIAFSNFLLDRGLRNVRIGVAQSIASYSRRLLK 68 + LK++K I++L H N D DSLGS +A FL +G + V IG + + L Sbjct: 10 DFLKNVKGS--ILILTHENPDGDSLGSGLALYKFLKKKG-KEVYIGSKDGVPHFLDFLPG 66 Query: 69 FSRVPIERNPKISERVVFIFDTSSLEQL-EPIKIPPNAKLIVIDHHVEKENPIPADISVI 127 V I + K + V + D S ++ + +K+ K I IDHHV E D I Sbjct: 67 VEDV-INPDGKFYD-VGIVVDASGFYRVGKEVKV---GKRIRIDHHVGGEFYGMHD--YI 119 Query: 128 DPKRTSTAEIVWELFKKLGYK--DEDSAKVLLAAIISDTSSFRYANAKTFKTVSEILELY 185 DP +TA +V+E+ K D+D A + + +DT FRY+N KT EL Sbjct: 120 DPTAPATAALVYEIIKNWDETAIDKDIATCIYTGLATDTGFFRYSNTNE-KTFELAKELV 178 Query: 186 DFSISEVSQLVAPVSDENVEQSKRIA-VLKACQRMEIHKV------RKFIIVTSKVSAYE 238 + + E V + K IA VL+ Q E KV +KF+ T + YE Sbjct: 179 SYGADPYYVYTMVMEREKVNKMKLIAKVLETLQLHEDGKVAGITVFKKFLDETG--TTYE 236 Query: 239 ALACKVFLQLGAD-----VAIVGSEKDGV-RISARAKDYLVKKGLHLGKLMEKVGPIIGG 292 V + A++ ++GV ++S RAK +++GK+ E++G Sbjct: 237 DTEGLVNYPRSIEGVKVAYALIEKPEEGVWKVSLRAKG-----NVNVGKIAERLG----- 286 Query: 293 SGGGHPGAAGANGKEN-LDEAIKFLVKEVQRFLK 325 GGGH A+GA K N +EA+K L++ ++ LK Sbjct: 287 -GGGHKYASGAKIKTNSYEEALKKLLEAIKEELK 319 >pir||D72622 hypothetical protein APE1437 - Aeropyrum pernix (strain K1) >gi|5105120|dbj|BAA80434.1| (AP000061) 341aa long hypothetical protein [Aeropyrum pernix] Length = 341 Score = 83.9 bits (204), Expect = 2e-15 Identities = 80/295 (27%), Positives = 143/295 (48%), Gaps = 18/295 (6%) Query: 22 LLCHHNADPDSLGSAIAFSNFLLDRGLR-NVRIGVAQSIASYSRRLLKFSRVPIERNPKI 80 ++ H NADPD++G+A+ L R LR N + + I+ S+RLL+ V E P Sbjct: 18 VITHRNADPDAVGAALVVREVL--RALRMNPCLYSPEGISRQSKRLLE--AVGEEFGPLC 73 Query: 81 SER----VVFIFDTSSLEQLEPIK-IPPNAKL-IVIDHHVEKENPIPADISVIDPKRTST 134 S + + D ++L Q+ + + A+L +VIDHH AD++++DP S+ Sbjct: 74 SPDENPLIAVVVDAANLSQIAGAESLFRAARLKVVIDHHERGSIHEEADVALVDPGAGSS 133 Query: 135 AEIVWELFKKLGYKDEDS-AKVLLAAIISDTSSFRYANAKTFKTVSEILEL-YDFS-ISE 191 +E+ + + G S A L I+ DT F A+ +F+ + +L + D+ + E Sbjct: 134 SELAVKTAVEAGTPLRPSVATAALGGIVYDTGRFLRASKLSFEAAAHLLSMGADYGKVLE 193 Query: 192 VSQLVAPVSDENVEQSKRIAVLKACQRMEIHKV-RKFIIVTSKVSAYEALACKVFLQLGA 250 + + + S R+A LKA R++I + + +I + + ++E+ K + A Sbjct: 194 AGRQRG--RRDRGDLSLRLAKLKAFSRLKIGRACSELLIAVTHIGSFESDVAKSLVDEAA 251 Query: 251 DVAIVGSEKDG-VRISARAKDYLVKKGLHLGKLMEKVGPIIGGSGGGHPGAAGAN 304 DVA+ +E+ R+S R ++KG+ + + GG GGGH A A+ Sbjct: 252 DVAVAVAERTSEFRLSVRVSPLALEKGVTARAIASMLAEKFGGEGGGHDEAGMAH 306 >dbj|BAB06892.1| (AP001518) unknown conserved protein [Bacillus halodurans] Length = 314 Score = 81.9 bits (199), Expect = 9e-15 Identities = 84/330 (25%), Positives = 151/330 (45%), Gaps = 36/330 (10%) Query: 9 NLLKSLKRDEGIILLCHHNADPDSLGSAIAFSNFLLDR-GLRNVRIGVAQSIASYSRRLL 67 ++L+++ + II+ H DPD++GS + + + +R +NV + + L Sbjct: 4 DILQAIAAYDQIIIHRHERPDPDAIGSQVGLATLIRERYPEKNVFV-----VGDEEPSLG 58 Query: 68 KFSRVPIERNPKISERVVFIFDTSSLEQLEPIKIPPNAKLIVIDHHVEKENPIPADISVI 127 + + + K +V + DT++ E++ + KL+ IDHH +E DI + Sbjct: 59 FLANMDELDDEKFEGALVIVCDTANEERISDQRYARGDKLVKIDHHPNEEP--YGDIVWV 116 Query: 128 DPKRTSTAEIVWELF---KKLGYK-DEDSAKVLLAAIISDTSSFRYANAKTFKTVSEILE 183 DP +ST+E++ +LF K+ GY ++SA +L A I+ DT FRY N T KT+ + Sbjct: 117 DPSASSTSEMIVDLFLAGKEEGYNLSKESALLLYAGIVGDTGRFRYDNT-TPKTLRHVAL 175 Query: 184 LYDFSISEVSQLVAPVSDENVEQSKRIAVLKACQRMEIHKVRKFIIVTSKVSAYE---AL 240 L + I E + + + ++Q+ R+E + ++ F I+ V + L Sbjct: 176 LLEQGI-ETNDFYSGLHRRELKQT----------RLEGYILQHFSIIDGCVGVMKLTSEL 224 Query: 241 ACKVFLQLGADVAIVGSEKDGVRISARAKDYLVKKGLHLGKLMEKVGPIIG-----GSGG 295 + + A V S D + + V+ G + + GP+I +GG Sbjct: 225 LAEYDVTANESAAFVNSFSDVEGLLTWV--FFVEDGETIRVRLRSKGPVINTVAMEHNGG 282 Query: 296 GHPGAAGANGK--ENLDEAIKFLVKEVQRF 323 GHP AAGA K E D+ ++ L + F Sbjct: 283 GHPMAAGAKAKSWEETDKIVEKLRRVASDF 312 >pir||F69999 conserved hypothetical protein ytqI - Bacillus subtilis >gi|2293259|gb|AAC00337.1| (AF008220) YtqI [Bacillus subtilis] >gi|2635390|emb|CAB14885.1| (Z99118) similar to hypothetical proteins [Bacillus subtilis] Length = 313 Score = 76.5 bits (185), Expect = 4e-13 Identities = 87/317 (27%), Positives = 147/317 (45%), Gaps = 52/317 (16%) Query: 10 LLKSLKRDEGIILLCHHNADPDSLGSAIAFSNFLLDR-GLRNV-RIGVAQSIASYSRRLL 67 L++++ + IIL H DPD+ GS + L + +N+ +G + S+ L Sbjct: 5 LIRTISLYDTIILHRHVRPDPDAYGSQCGLTEILRETYPEKNIFAVGTPEPSLSFLYSLD 64 Query: 68 KFSRVPIERNPKISERVVFIFDTSSLEQLEPIKIPPNAKLIVIDHHVEKENPIPADISVI 127 + N +V + DT++ E+++ + P AKL+ IDHH E+P D+ + Sbjct: 65 EVD------NETYEGALVIVCDTANQERIDDQRYPSGAKLMKIDHH-PNEDPY-GDLLWV 116 Query: 128 DPKRTSTAEIVWELF---KKLGYK-DEDSAKVLLAAIISDTSSFRYANA--KTFKTVSEI 181 D +S +E+++EL+ K+ G+K + +A+++ A I+ DT F + N KT K E+ Sbjct: 117 DTSASSVSEMIYELYLEGKEHGWKLNTKAAELIYAGIVGDTGRFLFPNTTEKTLKYAGEL 176 Query: 182 LELYDFSISEV-SQLVAPVSDENVEQSKRIAVLKACQRMEIHKVRKFIIVTSKVSAYEAL 240 ++ Y FS SE+ +QL ++ + K+ FI VS E Sbjct: 177 IQ-YPFSSSELFNQLYE-------------------TKLNVVKLNGFIF--QNVSLSENG 214 Query: 241 ACKVF-----LQLGADVAIVGSEKDGV--RISA-RAKDYLVKKGLHLGKLMEKVGPIIGG 292 A VF L+ A S+ G IS RA + V++ + GP+I G Sbjct: 215 AASVFIKKDTLEKFGTTASEASQLVGTLGNISGIRAWVFFVEEDDQIRVRFRSKGPVING 274 Query: 293 -----SGGGHPGAAGAN 304 +GGGHP A+GA+ Sbjct: 275 LARKYNGGGHPLASGAS 291 >sp|Q49428|Y371_MYCGE HYPOTHETICAL PROTEIN MG371 >gi|1361596|pir||A64241 hypothetical protein homolog MG371 - Mycoplasma genitalium >gi|3844959|gb|AAC71598.1| (U39719) conserved hypothetical protein [Mycoplasma genitalium] Length = 324 Score = 71.8 bits (173), Expect = 1e-11 Identities = 56/181 (30%), Positives = 91/181 (49%), Gaps = 7/181 (3%) Query: 7 LKNLLKSLKRDEGIILLCHHNADPDSLGSAIAFSNFL-LDRGLRNVRIGVAQSIASYSRR 65 +KN K +K+ + L H N D D+ GSA AF FL + + + +I + R Sbjct: 9 IKNFSKKVKQFDKFSLFVHVNPDFDAFGSAFAFKTFLNTFFSEKKAYVMGSYNINADGRE 68 Query: 66 LLKFSRVPIERNPKISERVVFIFDTSSLEQLEPIKIPPNAKLIVIDHHVEKENPIPADIS 125 L F + I + + E + IFDTS+ E++ K + + IDHH E AD+ Sbjct: 69 LFPFEQTDI-NDDFVKESLAIIFDTSNQERVLTQKHKLAKETVRIDHHPRTEK--FADME 125 Query: 126 VIDPKRTSTAEIVWELFKKLGYK-DEDSAKVLLAAIISDTSSF--RYANAKTFKTVSEIL 182 ID ++TAE++ L ++GYK +++ A L A II+DT F +TF ++++ Sbjct: 126 WIDSSFSATAEMIGYLILQMGYKLNDEIASYLYAGIITDTQRFWGPTTTPQTFALTAKLM 185 Query: 183 E 183 E Sbjct: 186 E 186 >sp|P75229|Y371_MYCPN HYPOTHETICAL PROTEIN MG371 HOMOLOG (G12_ORF325) >gi|2146233|pir||S73619 hypothetical protein G12_orf325 - Mycoplasma pneumoniae (strain ATCC 29342) >gi|1673964|gb|AAB95941.1| (AE000027) phosphodiesterase [Mycoplasma pneumoniae] Length = 325 Score = 68.7 bits (165), Expect = 9e-11 Identities = 54/181 (29%), Positives = 92/181 (49%), Gaps = 7/181 (3%) Query: 7 LKNLLKSLKRDEGIILLCHHNADPDSLGSAIAFSNFL-LDRGLRNVRIGVAQSIASYSRR 65 + NL LK + L H N D D+ G+A AF FL + + + + +I + + Sbjct: 9 IHNLTNKLKTFDNFSLYVHVNPDFDAFGAAFAFKAFLAVYFPHKKAYVMGSHNIKADGKD 68 Query: 66 LLKFSRVPIERNPKISERVVFIFDTSSLEQLEPIKIPPNAKLIVIDHHVEKENPIPADIS 125 L F PI+ + + + IFDTS+ E++ K + + IDHH + E+ AD+ Sbjct: 69 LFPFEAAPID-DAFVKNSLAIIFDTSNQERVLTQKHKLAKETVRIDHHPKTES--FADLE 125 Query: 126 VIDPKRTSTAEIVWELFKKLGYK-DEDSAKVLLAAIISDTSSFRYA--NAKTFKTVSEIL 182 IDP ++ AE+V L ++GY+ + + A + A II+DT F + +TF +++L Sbjct: 126 WIDPAFSAAAEMVGYLILQMGYELNAEMAAYIYAGIITDTQRFSSSATTPQTFALTAKLL 185 Query: 183 E 183 E Sbjct: 186 E 186 Database: ./suso.pep Posted date: Jul 6, 2001 5:57 PM Number of letters in database: 840,471 Number of sequences in database: 2977 Database: /banques/blast2/nr.pep Posted date: Dec 14, 2000 12:46 PM Number of letters in database: 188,266,275 Number of sequences in database: 595,510 Lambda K H 0.318 0.137 0.378 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 112702140 Number of Sequences: 2977 Number of extensions: 4535457 Number of successful extensions: 20360 Number of sequences better than 1.0e-10: 9 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 20336 Number of HSP's gapped (non-prelim): 9 length of query: 330 length of database: 189,106,746 effective HSP length: 59 effective length of query: 271 effective length of database: 153,796,013 effective search space: 41678719523 effective search space used: 41678719523 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 165 (68.7 bits)