BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1367 (PAB1367) DE:Hypothetical protein
         (112 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75065 hypothetical protein PAB1367 - Pyrococcus abyssi (st...   238  2e-62
pir||C71167 hypothetical protein PH0535 - Pyrococcus horikoshii ...   206  9e-53

>pir||B75065 hypothetical protein PAB1367 - Pyrococcus abyssi (strain Orsay)
           >gi|5458928|emb|CAB50415.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 112
           
 Score =  238 bits (601), Expect = 2e-62
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MAKCPVCGASLDWRDLIEQMLTLENAEDIFKDREEFLGKLKEFTFKCPVCGEEFLGKYLP 60
           MAKCPVCGASLDWRDLIEQMLTLENAEDIFKDREEFLGKLKEFTFKCPVCGEEFLGKYLP
Sbjct: 1   MAKCPVCGASLDWRDLIEQMLTLENAEDIFKDREEFLGKLKEFTFKCPVCGEEFLGKYLP 60

Query: 61  MDEAEKVFELLNDFKGSIDWDNRKVRIRLNQLLALDKMLEEWDRRVKNVGHK 112
           MDEAEKVFELLNDFKGSIDWDNRKVRIRLNQLLALDKMLEEWDRRVKNVGHK
Sbjct: 61  MDEAEKVFELLNDFKGSIDWDNRKVRIRLNQLLALDKMLEEWDRRVKNVGHK 112


>pir||C71167 hypothetical protein PH0535 - Pyrococcus horikoshii
           >gi|3256941|dbj|BAA29624.1| (AP000002) 115aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 115
           
 Score =  206 bits (518), Expect = 9e-53
 Identities = 92/112 (82%), Positives = 104/112 (92%)

Query: 1   MAKCPVCGASLDWRDLIEQMLTLENAEDIFKDREEFLGKLKEFTFKCPVCGEEFLGKYLP 60
           MAKCPVCG++LDWR+LIEQML++ENA ++F D+E FL +L+EFTFKCPVCGEEFLGKYLP
Sbjct: 4   MAKCPVCGSTLDWRELIEQMLSMENAREVFSDKERFLKELEEFTFKCPVCGEEFLGKYLP 63

Query: 61  MDEAEKVFELLNDFKGSIDWDNRKVRIRLNQLLALDKMLEEWDRRVKNVGHK 112
            +E EKVFELLNDFKGSIDW+ RKVRIRLNQLL LDKMLEEWDRRVKNVGHK
Sbjct: 64  REEGEKVFELLNDFKGSIDWERRKVRIRLNQLLVLDKMLEEWDRRVKNVGHK 115


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.142    0.441 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40244711
Number of Sequences: 2977
Number of extensions: 1521897
Number of successful extensions: 5859
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5857
Number of HSP's gapped (non-prelim): 2
length of query: 112
length of database: 189,106,746
effective HSP length: 47
effective length of query: 65
effective length of database: 160,977,857
effective search space: 10463560705
effective search space used: 10463560705
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)