BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1368 (PAB1368) DE:Hypothetical protein
(241 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75065 hypothetical protein PAB1368 - Pyrococcus abyssi (st... 477 e-134
pir||D71167 hypothetical protein PH0536 - Pyrococcus horikoshii ... 438 e-122
pir||E69230 hypothetical protein MTH975 - Methanobacterium therm... 310 9e-84
gi|11497987 A. fulgidus predicted coding region AF0375 [Archaeog... 70 2e-11
>pir||A75065 hypothetical protein PAB1368 - Pyrococcus abyssi (strain Orsay)
>gi|5458927|emb|CAB50414.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 241
Score = 477 bits (1214), Expect = e-134
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MWDTSKDYRLLVAEKAVELFLRTIEGAKFRGQWDKKRAIKLAKEMIPEIQALRYSYLEPQ 60
MWDTSKDYRLLVAEKAVELFLRTIEGAKFRGQWDKKRAIKLAKEMIPEIQALRYSYLEPQ
Sbjct: 1 MWDTSKDYRLLVAEKAVELFLRTIEGAKFRGQWDKKRAIKLAKEMIPEIQALRYSYLEPQ 60
Query: 61 ELVDTPQMKALKEKAQGIIEALGGEDWHEKFISQAGKDEREKVEEQVAKIRFFLNTILGL 120
ELVDTPQMKALKEKAQGIIEALGGEDWHEKFISQAGKDEREKVEEQVAKIRFFLNTILGL
Sbjct: 61 ELVDTPQMKALKEKAQGIIEALGGEDWHEKFISQAGKDEREKVEEQVAKIRFFLNTILGL 120
Query: 121 DRRLKLGKINDPVIAVDIVVGEVMSVGKHPNADKLLVTNVNIGNRAVTVITNDLTVKEGN 180
DRRLKLGKINDPVIAVDIVVGEVMSVGKHPNADKLLVTNVNIGNRAVTVITNDLTVKEGN
Sbjct: 121 DRRLKLGKINDPVIAVDIVVGEVMSVGKHPNADKLLVTNVNIGNRAVTVITNDLTVKEGN 180
Query: 181 RVAVALLPPRVFFGIVSEGMFLGAGEGVLKNVKGEIGGLPKGIPLEALNETRNLVEAFLK 240
RVAVALLPPRVFFGIVSEGMFLGAGEGVLKNVKGEIGGLPKGIPLEALNETRNLVEAFLK
Sbjct: 181 RVAVALLPPRVFFGIVSEGMFLGAGEGVLKNVKGEIGGLPKGIPLEALNETRNLVEAFLK 240
Query: 241 E 241
E
Sbjct: 241 E 241
>pir||D71167 hypothetical protein PH0536 - Pyrococcus horikoshii
>gi|3256942|dbj|BAA29625.1| (AP000002) 241aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 241
Score = 438 bits (1114), Expect = e-122
Identities = 215/240 (89%), Positives = 233/240 (96%)
Query: 1 MWDTSKDYRLLVAEKAVELFLRTIEGAKFRGQWDKKRAIKLAKEMIPEIQALRYSYLEPQ 60
MWDTSKDYRLLVAEK+VELF+RTIEGAKFRGQWDKKR+I+LAKEMIP+IQALRYSY++P+
Sbjct: 1 MWDTSKDYRLLVAEKSVELFIRTIEGAKFRGQWDKKRSIQLAKEMIPDIQALRYSYIDPE 60
Query: 61 ELVDTPQMKALKEKAQGIIEALGGEDWHEKFISQAGKDEREKVEEQVAKIRFFLNTILGL 120
ELVDTPQMK LKEKA+GIIEALGGEDWH KF+SQA +++REKVEEQVA+I+FFLNTIL L
Sbjct: 61 ELVDTPQMKDLKEKAKGIIEALGGEDWHHKFLSQASREDREKVEEQVARIKFFLNTILNL 120
Query: 121 DRRLKLGKINDPVIAVDIVVGEVMSVGKHPNADKLLVTNVNIGNRAVTVITNDLTVKEGN 180
DRRLKLGKINDPVIAVDIVVGEVMSVGKHP+AD+LLVTNVNIG RAVTV+TNDLTVKEGN
Sbjct: 121 DRRLKLGKINDPVIAVDIVVGEVMSVGKHPSADRLLVTNVNIGERAVTVVTNDLTVKEGN 180
Query: 181 RVAVALLPPRVFFGIVSEGMFLGAGEGVLKNVKGEIGGLPKGIPLEALNETRNLVEAFLK 240
RVAVALLPPR FFGIVSEGMFLGAGEGVLKNVKGEIGGLPKGIPLEALNETRN VEAFLK
Sbjct: 181 RVAVALLPPRNFFGIVSEGMFLGAGEGVLKNVKGEIGGLPKGIPLEALNETRNAVEAFLK 240
>pir||E69230 hypothetical protein MTH975 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622074|gb|AAB85471.1| (AE000871)
conserved protein [Methanobacterium thermoautotrophicum]
Length = 246
Score = 310 bits (786), Expect = 9e-84
Identities = 151/240 (62%), Positives = 189/240 (77%), Gaps = 1/240 (0%)
Query: 1 MWDTSKDYRLLVAEKAVELFLRTIEGAKFRGQWDKKRAIKLAKEMIPEIQALRYSYLEPQ 60
MWDTSKDYRL+VA KAV+LF RT+E FRGQW KK A++ A E+ +Q L Y Y+EP+
Sbjct: 7 MWDTSKDYRLMVAVKAVDLFRRTLESGGFRGQWKKKPALQAAGEIERILQGLTYCYMEPE 66
Query: 61 ELVDTPQMKALKEKAQGIIEALGGEDWHEKFISQAGKDEREKVEEQVAKIRFFLNTILGL 120
+L +P++ +K K + I+EALGGEDW +F+ +A ++EREKVEE +A++RFFLNT+ L
Sbjct: 67 DLASSPEVMEIKGKVEEIVEALGGEDWSRRFLEEAPREEREKVEENIARVRFFLNTLGNL 126
Query: 121 DRRLKLGKINDPVIAVDIVVGEVMSVGKHPNADKLLVTNVNIGNRAVTVITNDLTVKEGN 180
DRRL LGKI+DPVI VDI+ GEVMSVG HP ADKL V NVN G R++ V+TNDL V+E +
Sbjct: 127 DRRLMLGKISDPVIGVDIITGEVMSVGNHPVADKLHVCNVNAGGRSIKVVTNDLDVREND 186
Query: 181 RVAVALLPPRVFFGIVSEGMFLGAGEGVLKNVKGEIGGLPKGIPLEALNETRNLVEAFLK 240
VAVALLPP+ F G+ SEGMFLG EGVL++V GE G +P+GIPLEALNETRNLVE FLK
Sbjct: 187 HVAVALLPPQNFMGVTSEGMFLGV-EGVLRDVDGEPGEMPRGIPLEALNETRNLVEEFLK 245
>gi|11497987 A. fulgidus predicted coding region AF0375 [Archaeoglobus fulgidus]
>gi|7483414|pir||G69296 hypothetical protein AF0375 -
Archaeoglobus fulgidus >gi|2650261|gb|AAB90864.1|
(AE001078) A. fulgidus predicted coding region AF0375
[Archaeoglobus fulgidus]
Length = 207
Score = 70.2 bits (169), Expect = 2e-11
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 3 DTSKDYRLLVAEKAVELFLRTIEGAKFRGQWDKKRAIKLAKEMIPEIQALRYSYLEPQEL 62
DT+ D+R+L+AEK VE +R + + +G +K+ ++ K + E+Q ++Y YL EL
Sbjct: 2 DTANDFRILLAEKGVEELIRVSQSLQVQG---RKKFVEALKSISSELQNVKYCYLSVDEL 58
Query: 63 VDTPQMKALKEKAQGIIEALGGEDWHEKFISQAGKDEREKVEEQVAKIRFFLNTILGLDR 122
++ + + A + + L + I+ ++L + L
Sbjct: 59 LEFESFLKVVDTASSLRKMLPDSKDYSTAIAD-----------------YWLEYLAHLPE 101
Query: 123 RLKLGKINDPVIAVDIVVGEVMSVGKHPNADKLLVTNVNIGNRAVTVITNDLTVKEGNRV 182
+K G+I A+ GE+ S D L + + G R + V+TN ++G +
Sbjct: 102 LMKRGEIERIGEAIRYFAGEITS---RSGLDGLWLCVFDCGGR-LEVVTNSEEYRQGKKA 157
Query: 183 AVALLPPRVFFGIVSEGMFLGAGEGVLKNVKGEI 216
VA LPPR F +S GMF+ + + K KGE+
Sbjct: 158 VVAYLPPRRFGKEISRGMFVLQHDRIAK--KGEL 189
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.389
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83759259
Number of Sequences: 2977
Number of extensions: 3455905
Number of successful extensions: 11170
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11164
Number of HSP's gapped (non-prelim): 4
length of query: 241
length of database: 189,106,746
effective HSP length: 56
effective length of query: 185
effective length of database: 155,591,474
effective search space: 28784422690
effective search space used: 28784422690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)